<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:25:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262684" ref_strand="+" ref_description="SGN-E262684 [cLEG-63-K3]">
      <seq>tattatcctactatttcatccgtattaataaatatttgtgctctttcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatcagaggctgctttcagtgcggcaaggtttcaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14540" stop="13316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14240" g_stop="13616" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E262684" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14240" e_stop="13616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCCTACTATTTTATCAGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTCTAAATATAAAAAAATAGATAAATTTAAAGTTGCAATTGAAGGTATGATTGAAAAATTAAAAAAATATTTTTTTCTTATTCCTCAAATTTATTTAACTGCTACTTTACTTTCATCCTGATTATAAATTACGAGGTGTGCAGGGCCTTATTGACACTTTTTGTGAAACTTAAGAAATTTTACCTAAAGAAATTCCAAATTGTGAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAAATTTTGTATAAAAAATATAGAACTAGTGAAAATATTGAAGGAGAAGTTGGTCAAACTTCTAATCAAGATATTGATTTTGAAGTTCGAATTTCAACTTATATGAGAGGTTTTCTTTGTCTTAATTCTACTAACCGTGATGATTTAGAAGAATATATTAATCAATCTTTAGAAGTATTTGAAATCAAAGATGGCAATGAAGATTTATTAGGAT-GTGTAGTAGGCGAACCGTTGCATTTCCAACTTTGAGCAAAATGATTTGTGATGTTCTAGTTATTCAAGCTTCATCAGTTGCATTGGATGCTGCTTTCAGTGCGGCAAGGTTTCAAATTG</genome_strand>
        <mrna_strand>TATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTAC-TTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTTTCAGTGCGGCAAGGTTTCAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378787" ref_strand="+" ref_description="SGN-E378787 [TUS-35-B7]">
      <seq>caacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtagatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcataattggaatttgcaaaaaagaattatatgttataaactatgtatagagaaaaaaactggtgcatatttagcttcaaatattttaagtgttttagattattacatgattatagataaaataatgtctgtcgcattagataatgcatctaataatacaaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15746" stop="14370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15446" g_stop="14670" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E378787" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15446" e_stop="14670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGG-TTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTTCAACTCATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATATTAAGTTATACACTATGTGTAGAG-AAAAAACTGGTGCATACTTAGCTTCAAAAATTTTAAGTGTTTTAGATTATTACATGGTTACAGATAAAGTAATGTCTGTTGCATTAGATAATGCATCTAACAATACAAACGCTTC</genome_strand>
        <mrna_strand>CAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCT-A-ACGGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAGATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATTATATGTTATAAACTATGTATAGAGAAAAAAACTGGTGCATATTTAGCTTCAAATATTTTAAGTGTTTTAGATTATTACATGATTATAGATAAAATAATGTCTGTCGCATTAGATAATGCATCTAATAATACAAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392586" ref_strand="+" ref_description="SGN-E392586 [TUS-35-B13]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtaaatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15772" stop="14532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15472" g_stop="14832" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E392586" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15472" e_stop="14832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGG-TTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTTCAACTCATTGGATTGATCATA</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCT-A-ACGGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAAATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392581" ref_strand="+" ref_description="SGN-E392581 [TUS-35-B7]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcataatagatagtaaagtgtctattacttcggacatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15772" stop="14586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15472" g_stop="14886" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E392581" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15472" e_stop="14886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGG-TTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTC</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCT-A-ACGGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAATAGATAGTAAAGTGTCTATTACTTCGGACATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274195" ref_strand="+" ref_description="SGN-E274195 [cLEN-8-D4]">
      <seq>tcccacaagggagaaggtgaagtatccacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcatgcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctgaagcattatccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15771" stop="14900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15471" g_stop="15199" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E274195" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15471" e_stop="15199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGG</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCCACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCATGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTGAAGCATTATCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274025" ref_strand="+" ref_description="SGN-E274025 [cLEN-8-D3]">
      <seq>tcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15771" stop="14909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15471" g_stop="15209" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E274025" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15471" e_stop="15209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTG</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345050" ref_strand="+" ref_description="SGN-E345050 [cTOF-22-J14]">
      <seq>aaaagctcacttgttcttctagggtttcacaagatctcttttgcctctgcaaaacacgagcgaattgcgatttctagggttacgatttgtgtttgttcgggtgtttgatggtccgaggagtgatttgagggtataaatcttgattttttctggaagattttgaagagagaaaggaaacgatggcgccttttgacaaagagcttgaagagcagattgctgttgctgggaacaagctgattgagcctccttcttcacttgaagaactcctccgtttgcttgaccaagtagagtcttccctgtctaaagtggagcagtcaccagcgaaatcaatgcatgatgcactttctccattgatgaaggcattggttgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactagaattactgcaccagacgctccatatgatgacgacaaaatgaaggatatctttcaattaattgtgtcgtcttttgagaatctggatgaccagtctagcagatcttataataagagggtgatgatccttgagacagtggccaaggtcaggtcatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23655" stop="28283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23955" g_stop="24235" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="27592" i_length="3357">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27593" g_stop="27796" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="485" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27797" i_stop="27869" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27870" g_stop="27983" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="599" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E345050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23955" e_stop="24235"/>
          <exon e_start="27593" e_stop="27796"/>
          <exon e_start="27870" e_stop="27983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGACGTAAGCTTTTTTGTTTATTTTGGTTGTGAATTCTGTTTTTGTATAATCGGTATGATATTTTTTTTAGATTTTTATGTTTAGGTTTTTTTTTTGTTATCTTGAACTATTTCATACCATTTTTGGGCTACTTCGAATTGTTTTAGATGTTTGTTTAAGTAATTCTCGGGTTGAGTTTCTGCTTTTGTATGATGCTCCGCTTTACTTTAGAGCTAATTAGGGCTAGATTCAAAGAATAAAACTTGGAAGCCTACAAAATAATTGAACTATGTGTTGACTCCAGGGCATTGAACCTGAGCATCCCACATCTGGGAGATATGTGTACACCCTTGACTGGTGACCTCTGCTCTAGGTTTTGTCAAAGGGTGTTCAAAATTCTATATATACAAATAAAAACTAGTATTTAAGGCTAATGATGTTCGGCTGATTACCCTAGTACCGCCGCAGCTGTGCCCTTGTTGATTACCCTAGCACCGCCATAGCTATGCCCTTATTGATTACCCTAGCACTGCTGTAGCTCTGCCCTTGTTGATTACCCTAGCACCGCCGTAGCTATGCCCTTGTTGATTACCCTAGCACCGCTGTAGCTCTGCCCTTGTTGATTACCCTAGATCTGCCCTTGTTGAACACTGTTATCAACTTCTAATTTATTTTGATAAGGAAGTAAACATTATAAACTATCTTTTGGTTGAAAGCTTAACTTTTATTCAGCCAGTATGGAAATAGTACACCAGTTAGCTATTCTAATTTCTCACTCTTTTACAATCCTCATTAAGCTAGCTATTCTATCAGTTTCTACTCTACAATTCTAGCTATCTGTCTAATCTTTGAAGCCCCCCCCCCCCCCACCACACCACACCACACACTTACACTTGGTCTGGTGTTGTCCTTTTGTGTGAAGTTGGGGATGATTCCTCTGGATCTATGCTTGCATTCCTGCTGGTGTTGTTGAAATATTCTAGCATTCTGCTCAATCCAGACATGGTAAATGCATGCATTGAACAGCCAGCCTAGCATGTGTAATTCTGCTTTCCTTTGTTTCACTCTGTGCGTCAACTATTGGATCTCAGCCTCCCAATTTTAGTGATTCAAAATATGATTTAAAAAAGCCCTTCTTGATTGGTAACAGCCTTACCAATATCTTCACAAGTTAGTGGTAGGTCTACAGACACACCACCCTCCCTAGACCCAACTTGTGGGATTACAGTGGTAATGTTGTTGTCGTTTCTCTTTCTTGTGATGTATACGATGTTATCCCCCAGGACAGTATTTTGATTCTTACTCTATATAGAGCCCTTGAATACTGTTATTAGCTTTTGATTTGTTTTGATAGTGAGGTAGAAACTGACTTCTTTTAATTATTCTAAATATGATTAAAAATCTTTCTTTATTTGTTATCCTCCACCCTGGATGATTGCCATATGTTCCCTCTCCTCTTGTTTGATGCAAGTCCTTTACTATTCTTCAAATTTAATTCTTAATGGCCTACCCGCTGTTTCAGTTTGCATTGAGTTGAATTATCCTGCTTAATGAAAGTATTGCTTTTAAAATTCATGCTTTTCCTAATGTTTCTTTTAAATTTATTTTGATATTTGTTGTCTCTGCCTATTTGGAAATATTTTGGCATGTCTTTTTTATAAGTAATTTCTGTATTCTGGTAATTTTTCATTTTTTCCTGTTAACTGGTGGTCTCTGTTTAGAGTCTGGTTTAAACTATCTTGAAGCATTATGGTTTGCAATTGATGGGCATTGCCACTAGGGCCACTCTTTTTTCATGACTCCCCTGTGGGATGTGGAATATTACTGGGTATGTTGTTGCATGTGATGTATACATTAGTCGCAACTTTTTGTTTGGGTCCTAGAGTTTTGTGGTTTGCTAGTGAGACATATGAGCATGTCCATAGTTAAATAATTTGAACAGGATGTAGTCTGTGTAATCTTGACATCTCCTGGCGGAGCTTTTTATTTTTGATAATTGTTTCAAATGATGGTATCTGAAAATTCCAGAGAGATAATTGGGTTGGCGGGTAATAAGTACACCATTCTTTTTATTTGATAAGTGCCTGACAATTTGTAGGAAAGGGAAAATGAAAAAAATGGAAGAAGTAGTATATACTCTTGGAATCTCTGGGTATTAAATAACAGTCAATATTTATGCTGAAAGATAGCAAGGCTGTGGGCATGCTGTGTGTTTCCCCTGTGAGGCTCTTCTAGTTGTACTTGAAAATCCCGTTGGCTTTTCCTGGAGGGTTTCTCAAGGAGCAGAGTATGGGCAATATTAGTTTTCTTTCTGAAGTGGTGATTTTCTTATGCAAATGGTTTATTGATTTAACCCCCCATCTTAATTGAGAAGCCACAATGAAATAAGTTTCCTTTTGTGGGTGTCTTCCCCTAGTCAAAGTTAAAATGCATAGATTTGTGTTTAACAATCTCATAAATTAATTGTCATTTTACTTTTTAGAGAAAATCTGACTGTGCATCTTCGTATTGCTGGTTAAAGAACGATAAACAGTGACAGATACTAATTTGGAACCATGAGTTTCCTGGTATTTCCTTGATAACAAGCTGATGCAGACCACCTGTTTTTGGTGATAAAATTGATACTTTATGAATACGTCCTTTAGATTATTGTTTAGAAGATTTGGTTTGTGTGATTTTATGCTGCCATAATTCTTTTGGGAAAATACAAAAACCTTTAGCCTGTATGGATAAAATTGGGGCCAGCTGATTGTCATCACTTAATCGATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGACTGTTATTCCCCTTTTTCTAATCAATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGGCTGTTATTCCCCTTTTTCTTTAAAGTGGGTCATTGACTTCTAGATAGGAGATCTTTTTTCTTCTATAAATTTGTTTGGAATTTAACCCTGCAGTAGTATGGTTGGTTACATGGAGAAAAGGAAAAGCTAGAGTTTTTGAACTTAAGGAAGGACAGTGTAATTAACCATGGGTCGGAGTTTATATTCTTGCTTAGTTTTAGTGGTGGAGACTTGGTTGACTTAGCAGGTCCTTTACACTTGCTGACTTTTTTTTTTGATGTACTCTTTTCCCATCATTGCAGATATTTCATACATTACCCATATATCAATAGATACTGTTGGTATAACAAAACAGAAGTTATTTTGAACCGTTTGTTTTGGCAGATTTTTGGTTTCACTGTTAATTTTGCAATTAACATATAATGTTTCATTTGCTGAAACTCATGCACGGTCTTTTTCTTGCCTAATCTTAATATACTTTTGGTTTTTTCTGCTTTAAGCAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTT</genome_strand>
        <mrna_strand>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737359" ref_strand="+" ref_description="SGN-E737359 [LC09CA06]">
      <seq>ccctttttcgcaagatctcttttgcctctgcaaacacgagcgacttgcgatttctagggttacgatttgtgtttgttcgggtgtttgatggtccgaggagtgatttgagggtatacatcttgattttttctggaagattttgaagagagaaaggaaacgatggcgccttttgacaaagagcttgaagagcagattgctgttgctgggaacaagctgattgagcctccttcttcacttgaagaactcctccgtttgcttgaccaagtagagtcttccctgtctaaagtggagcagtcaccagcgaaatcaatgcatgatgcactttctccattgatgaaggcattggttgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactacaattactgcaccagacgctccatatgatgacgacaaaatgaaggatatctttcaattaattgtgtcgtcttttgagaatctggatgaccagtctagcagatcttataataagagggtgatgatccttgagacagtggccaaggtcaggtcatgtgttgtcatgctggatctagaatgtgatgggctcatcgctgagatgtttcaccacttccttacagctatcagagaggatcactctgaaaatgttttttcatccatggcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23679" stop="29493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23977" g_stop="24235" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="261" r_length="258" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="27592" i_length="3357">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27593" g_stop="27796" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="465" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27797" i_stop="27869" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27870" g_stop="28051" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="647" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28052" i_stop="29150" i_length="1099">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29151" g_stop="29193" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="690" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E737359" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23977" e_stop="24235"/>
          <exon e_start="27593" e_stop="27796"/>
          <exon e_start="27870" e_stop="28051"/>
          <exon e_start="29151" e_stop="29193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGACGTAAGCTTTTTTGTTTATTTTGGTTGTGAATTCTGTTTTTGTATAATCGGTATGATATTTTTTTTAGATTTTTATGTTTAGGTTTTTTTTTTGTTATCTTGAACTATTTCATACCATTTTTGGGCTACTTCGAATTGTTTTAGATGTTTGTTTAAGTAATTCTCGGGTTGAGTTTCTGCTTTTGTATGATGCTCCGCTTTACTTTAGAGCTAATTAGGGCTAGATTCAAAGAATAAAACTTGGAAGCCTACAAAATAATTGAACTATGTGTTGACTCCAGGGCATTGAACCTGAGCATCCCACATCTGGGAGATATGTGTACACCCTTGACTGGTGACCTCTGCTCTAGGTTTTGTCAAAGGGTGTTCAAAATTCTATATATACAAATAAAAACTAGTATTTAAGGCTAATGATGTTCGGCTGATTACCCTAGTACCGCCGCAGCTGTGCCCTTGTTGATTACCCTAGCACCGCCATAGCTATGCCCTTATTGATTACCCTAGCACTGCTGTAGCTCTGCCCTTGTTGATTACCCTAGCACCGCCGTAGCTATGCCCTTGTTGATTACCCTAGCACCGCTGTAGCTCTGCCCTTGTTGATTACCCTAGATCTGCCCTTGTTGAACACTGTTATCAACTTCTAATTTATTTTGATAAGGAAGTAAACATTATAAACTATCTTTTGGTTGAAAGCTTAACTTTTATTCAGCCAGTATGGAAATAGTACACCAGTTAGCTATTCTAATTTCTCACTCTTTTACAATCCTCATTAAGCTAGCTATTCTATCAGTTTCTACTCTACAATTCTAGCTATCTGTCTAATCTTTGAAGCCCCCCCCCCCCCCACCACACCACACCACACACTTACACTTGGTCTGGTGTTGTCCTTTTGTGTGAAGTTGGGGATGATTCCTCTGGATCTATGCTTGCATTCCTGCTGGTGTTGTTGAAATATTCTAGCATTCTGCTCAATCCAGACATGGTAAATGCATGCATTGAACAGCCAGCCTAGCATGTGTAATTCTGCTTTCCTTTGTTTCACTCTGTGCGTCAACTATTGGATCTCAGCCTCCCAATTTTAGTGATTCAAAATATGATTTAAAAAAGCCCTTCTTGATTGGTAACAGCCTTACCAATATCTTCACAAGTTAGTGGTAGGTCTACAGACACACCACCCTCCCTAGACCCAACTTGTGGGATTACAGTGGTAATGTTGTTGTCGTTTCTCTTTCTTGTGATGTATACGATGTTATCCCCCAGGACAGTATTTTGATTCTTACTCTATATAGAGCCCTTGAATACTGTTATTAGCTTTTGATTTGTTTTGATAGTGAGGTAGAAACTGACTTCTTTTAATTATTCTAAATATGATTAAAAATCTTTCTTTATTTGTTATCCTCCACCCTGGATGATTGCCATATGTTCCCTCTCCTCTTGTTTGATGCAAGTCCTTTACTATTCTTCAAATTTAATTCTTAATGGCCTACCCGCTGTTTCAGTTTGCATTGAGTTGAATTATCCTGCTTAATGAAAGTATTGCTTTTAAAATTCATGCTTTTCCTAATGTTTCTTTTAAATTTATTTTGATATTTGTTGTCTCTGCCTATTTGGAAATATTTTGGCATGTCTTTTTTATAAGTAATTTCTGTATTCTGGTAATTTTTCATTTTTTCCTGTTAACTGGTGGTCTCTGTTTAGAGTCTGGTTTAAACTATCTTGAAGCATTATGGTTTGCAATTGATGGGCATTGCCACTAGGGCCACTCTTTTTTCATGACTCCCCTGTGGGATGTGGAATATTACTGGGTATGTTGTTGCATGTGATGTATACATTAGTCGCAACTTTTTGTTTGGGTCCTAGAGTTTTGTGGTTTGCTAGTGAGACATATGAGCATGTCCATAGTTAAATAATTTGAACAGGATGTAGTCTGTGTAATCTTGACATCTCCTGGCGGAGCTTTTTATTTTTGATAATTGTTTCAAATGATGGTATCTGAAAATTCCAGAGAGATAATTGGGTTGGCGGGTAATAAGTACACCATTCTTTTTATTTGATAAGTGCCTGACAATTTGTAGGAAAGGGAAAATGAAAAAAATGGAAGAAGTAGTATATACTCTTGGAATCTCTGGGTATTAAATAACAGTCAATATTTATGCTGAAAGATAGCAAGGCTGTGGGCATGCTGTGTGTTTCCCCTGTGAGGCTCTTCTAGTTGTACTTGAAAATCCCGTTGGCTTTTCCTGGAGGGTTTCTCAAGGAGCAGAGTATGGGCAATATTAGTTTTCTTTCTGAAGTGGTGATTTTCTTATGCAAATGGTTTATTGATTTAACCCCCCATCTTAATTGAGAAGCCACAATGAAATAAGTTTCCTTTTGTGGGTGTCTTCCCCTAGTCAAAGTTAAAATGCATAGATTTGTGTTTAACAATCTCATAAATTAATTGTCATTTTACTTTTTAGAGAAAATCTGACTGTGCATCTTCGTATTGCTGGTTAAAGAACGATAAACAGTGACAGATACTAATTTGGAACCATGAGTTTCCTGGTATTTCCTTGATAACAAGCTGATGCAGACCACCTGTTTTTGGTGATAAAATTGATACTTTATGAATACGTCCTTTAGATTATTGTTTAGAAGATTTGGTTTGTGTGATTTTATGCTGCCATAATTCTTTTGGGAAAATACAAAAACCTTTAGCCTGTATGGATAAAATTGGGGCCAGCTGATTGTCATCACTTAATCGATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGACTGTTATTCCCCTTTTTCTAATCAATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGGCTGTTATTCCCCTTTTTCTTTAAAGTGGGTCATTGACTTCTAGATAGGAGATCTTTTTTCTTCTATAAATTTGTTTGGAATTTAACCCTGCAGTAGTATGGTTGGTTACATGGAGAAAAGGAAAAGCTAGAGTTTTTGAACTTAAGGAAGGACAGTGTAATTAACCATGGGTCGGAGTTTATATTCTTGCTTAGTTTTAGTGGTGGAGACTTGGTTGACTTAGCAGGTCCTTTACACTTGCTGACTTTTTTTTTTGATGTACTCTTTTCCCATCATTGCAGATATTTCATACATTACCCATATATCAATAGATACTGTTGGTATAACAAAACAGAAGTTATTTTGAACCGTTTGTTTTGGCAGATTTTTGGTTTCACTGTTAATTTTGCAATTAACATATAATGTTTCATTTGCTGAAACTCATGCACGGTCTTTTTCTTGCCTAATCTTAATATACTTTTGGTTTTTTCTGCTTTAAGCAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAGGTATTACCAATATATTGCTTCAACAGTTGTATTGTTTCTATAATGTTTGGTTTCAGATTTCTTTATCAAAATGTGTTTGGTTAAAGATTTCTTGTATGTCATGTTTCTTTAATCCCAACCTGGATTTTTTTTGATAAGGACTAACTTGGATTGTTCTTTTAGACATGACCATGGTTTTAGAGAATATATCTGAAGTAAATAATACCTCACATTCCATTGAAACGTGATTAGATTTATGTGATTGTGAGCTTCTCATGTCTGGTTGTGTTTTTTAGTGGAGCTTCTAGTTAAGAAGTTTTCTTTCCAACCACGTGAAACATAATTTACAAGCTAGGCGCTACTTTCAAGTTCTTGAATTTGCATGGATCTGAGTATCTGAGCAGGGTTACTTGTTCTGTTTTTTTTATATCCAATTTGCTAAACCTTCAGGAGTAAATTGAAATGATTACTCCTAGCTCTTAAAAGATATTTTTTACTGATATGTTATATGTCCGAATTACAGCATTGTTTGAAGATGTTCAGTTGGTAATTCACCAGCATGAAAAATTCTCAAAATAATTTGGGTTGAAAGTTTCCCCTGTGGGTATTTCTCTCATTTTATTGTTGAAACAACATGAACTTCTGGGAACAACAGATTTGTTGAACATGTTTTTCTTTTCCTCTAGAAAATATTTAGAAGCTTATCCAAAAGTTCGTTACGCGCCCTTGGTAGCTATATATAAAACAGTAGCAAGTTGGAAGGTTTTGCACCTAAATATATTGAAACTTGAATGGATGTCATGTTTTTTCTTCCAACAGTGTACATCAACTTAGGAAAACTTACCCCTCTGTAAATACATTCATAACCATGTTTGCTCTACTGCTCACTTTTATATTGATAGTGGACTAGTTAAAATTACTTGCTGCACTGGTTTAACTGGATGATGCTTGATTAAAATCTGTCAAATAGATGGGTAATGTTTATTATGCAATACTTTGGTGTATGTTCTCTACCACATGTAAGGCTCTTGATTTTTCTTATTATTTTGTATGCTAATTCCTATCGAACATTTTATTTTGTAATAGTTTGTGTTGTTTATTCGTTGACTTTCACTTTCAGAGAGGATCACTCTGAAAATGTTTTTTCATCCATGGCAACAATC</genome_strand>
        <mrna_strand>TTTTTCGCAAGATCTCTTTTGCCTCTGC-AAACACGAGCGACTTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATACATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTACAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCACCACTTCCTTACAGCTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATCACTCTGAAAATGTTTTTTCATCCATGGCAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454003" ref_strand="+" ref_description="SGN-E454003 [cSTS-21-H18]">
      <seq>gaaatcaatgcatgatgcactttctccattgatgaaggcattggtcgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactagaattactgcaccagacgctccatatgatgatgacaaaatgaaggatatctttcaattaattgtatcgtcttttgagaatctggatgaccagtccagcagatcgtataataagagggtgatgatacttgagacagtggccaaggtcaggtcatgtgttgtcatgctggatctagaatgtgatgggctcatcaccgaaatgtttcagcacttccttaaaactataagagaggatcactctgagaatgttttttcatccatggcaacaatcatgactcttgtgctggaagaaagcgaagaagtatccttggaattgcttacccctctgttggctagtcttaaaaaggacaatgcggagggcacaccaattgctaaaaggttgggagagacagtatttgcaaactgtgctgcgaagcttaagccttacttgcctcaagcagtagaatcattgcaaatctctttaaatgagtacaataagattgttacttcagtgttggaagggactcttccagctgctgatggtattaatgacagtgctcctaaagaccaattggtcaccgaaaccaagttggctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27334" stop="29883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27634" g_stop="27796" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27797" i_stop="27869" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27870" g_stop="28051" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="345" r_length="182" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28052" i_stop="29150" i_length="1099">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29151" g_stop="29277" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="472" r_length="127" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29278" i_stop="29376" i_length="99">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29377" g_stop="29574" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="670" r_length="198" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E454003" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27634" e_stop="27796"/>
          <exon e_start="27870" e_stop="28051"/>
          <exon e_start="29151" e_stop="29277"/>
          <exon e_start="29377" e_stop="29574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAGGTATTACCAATATATTGCTTCAACAGTTGTATTGTTTCTATAATGTTTGGTTTCAGATTTCTTTATCAAAATGTGTTTGGTTAAAGATTTCTTGTATGTCATGTTTCTTTAATCCCAACCTGGATTTTTTTTGATAAGGACTAACTTGGATTGTTCTTTTAGACATGACCATGGTTTTAGAGAATATATCTGAAGTAAATAATACCTCACATTCCATTGAAACGTGATTAGATTTATGTGATTGTGAGCTTCTCATGTCTGGTTGTGTTTTTTAGTGGAGCTTCTAGTTAAGAAGTTTTCTTTCCAACCACGTGAAACATAATTTACAAGCTAGGCGCTACTTTCAAGTTCTTGAATTTGCATGGATCTGAGTATCTGAGCAGGGTTACTTGTTCTGTTTTTTTTATATCCAATTTGCTAAACCTTCAGGAGTAAATTGAAATGATTACTCCTAGCTCTTAAAAGATATTTTTTACTGATATGTTATATGTCCGAATTACAGCATTGTTTGAAGATGTTCAGTTGGTAATTCACCAGCATGAAAAATTCTCAAAATAATTTGGGTTGAAAGTTTCCCCTGTGGGTATTTCTCTCATTTTATTGTTGAAACAACATGAACTTCTGGGAACAACAGATTTGTTGAACATGTTTTTCTTTTCCTCTAGAAAATATTTAGAAGCTTATCCAAAAGTTCGTTACGCGCCCTTGGTAGCTATATATAAAACAGTAGCAAGTTGGAAGGTTTTGCACCTAAATATATTGAAACTTGAATGGATGTCATGTTTTTTCTTCCAACAGTGTACATCAACTTAGGAAAACTTACCCCTCTGTAAATACATTCATAACCATGTTTGCTCTACTGCTCACTTTTATATTGATAGTGGACTAGTTAAAATTACTTGCTGCACTGGTTTAACTGGATGATGCTTGATTAAAATCTGTCAAATAGATGGGTAATGTTTATTATGCAATACTTTGGTGTATGTTCTCTACCACATGTAAGGCTCTTGATTTTTCTTATTATTTTGTATGCTAATTCCTATCGAACATTTTATTTTGTAATAGTTTGTGTTGTTTATTCGTTGACTTTCACTTTCAGAGAGGATCACTCTGAAAATGTTTTTTCATCCATGGCAACAATCATGACTCTTGTGCTGGAAGAGAGCGAAGAAGTGTCGTTGGAATTGCTTACCCCTCTATTGGCTAGTGTTAAAAAGGACAATGCGGTATGTTGTTGTTGAAGAGATGATATTCTTTTTATATTTTATACCTCTTAGGTCTCTCTAGTCTCGTGATAGTGCTAAATATTAATACTTTTGTTTCAGGAGGTCACACCAGTGGCTAAAAGGTTGGGAGAGACAGTATTTGCAAACTGTGCTGCAAAGCTTAAGCCTTACTTGCCTCAAGCAGTAGAATCATTGCAAATCTCCTTAAATGAGTACAATAAGATTGTTACTTCAGTCTTGGAAGGGACTCTTCCAGCTGTTGATGGTATTAATGACGGTGCTCCTAAGGACGAATTG</genome_strand>
        <mrna_strand>GAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTCGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGATGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTATCGTCTTTTGAGAATCTGGATGACCAGTCCAGCAGATCGTATAATAAGAGGGTGATGATACTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCACCGAAATGTTTCAGCACTTCCTTAAAACTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATCACTCTGAGAATGTTTTTTCATCCATGGCAACAATCATGACTCTTGTGCTGGAAGAAAGCGAAGAAGTATCCTTGGAATTGCTTACCCCTCTGTTGGCTAGTCTTAAAAAGGACAATGCG...................................................................................................GAGGGCACACCAATTGCTAAAAGGTTGGGAGAGACAGTATTTGCAAACTGTGCTGCGAAGCTTAAGCCTTACTTGCCTCAAGCAGTAGAATCATTGCAAATCTCTTTAAATGAGTACAATAAGATTGTTACTTCAGTGTTGGAAGGGACTCTTCCAGCTGCTGATGGTATTAATGACAGTGCTCCTAAAGACCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542618" ref_strand="+" ref_description="SGN-E542618 [TUS-64-A5]">
      <seq>aaaaaatatgaaacaaaacaccttccataaacaaagtgacgacgacgtcggattaagtccctcgcagaaaccccaaatcgaaattctcggtcctataaaccccaggtgttttcttcttcttcttcccaattctcaaaatcttaccatttctcgccatggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaagcaaacggagattgcttttcaggaagaacagcaagtgaataaaaacagttcttcttcaatccataataacaacaactcagcaaatgtctcagattgaccccgacttaaccaaaaaaatcctttctttctctgaatttgagaccagtccccaacgataccaagaagaatatagcatacttcagtcatgggcctatagttcactggatctgtataagcatgagttgcttcgagtattatatcctgtatttattcattgcttcatggaacttgtcgctagaggttatattcaagaagcacgagcctttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgatcttcagaagttagaaggcgtcctctcaccttcccatctagaggaaacggaatttgctcattctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40461" stop="45018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40761" g_stop="41105" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42279" g_stop="42360" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="429" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994">
            <donor d_prob="0.815" d_score="0.96"/>
            <acceptor a_prob="0.329" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44355" g_stop="44433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="508" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44511" g_stop="44608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="606" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44718" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="631" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E542618" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40761" e_stop="41105"/>
          <exon e_start="42279" e_stop="42360"/>
          <exon e_start="44355" e_stop="44433"/>
          <exon e_start="44511" e_stop="44608"/>
          <exon e_start="44694" e_stop="44718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATATAAAACAAAACACCTTCCATAAACAAAGTGACGACGACGTCGTATTAAGTCCCTC-CAGAAACCCCAAATCAAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTTCTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAAT-TCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGAGTAAGTTTCTTTTTTCCACTTAATTTGATGTAAAAATTACTGTTTGGCTAAGAGGATTAAGTTCTAAAATCAATTTACCTTGAAAGATAGTTTAATTTCAATGAAACACGTTTAAGTAGAGAAGGATTGAGTACAGAAGATCTGAAAACTAGTTTAGGGTTGAGAGGTGACTTGGTTGTTGGAAGAAAAGCAGGAGCAATATAATTGAAGCAGTTTTTCTGCACCCTCCAGTAGCATTTCTGCAAATGCCCAAATTGACCCTGAACCGTCAGACAAAAATAATCTGTTCTCTGTAGATAACATAAATTTAATTACTGGACCCATTCTAAAGAGGGAGAAATCAGCACTACTTGGTGAAATAGGTTCTTTTTGAATCAATTGTCCTCTTCTCCTGTATTTTAAATGCAGAGTGCTTAGCCATGAGGTTGCGGTTCTAAATAGCATTGACAATGCCCAGAACCACTTTTGAGGTACTAGCACACTGTCTAGGAATTGGAAAGAGAGGATCAAAGGAAATTTGGCGGAAGAATATCCCTGTTTGTATCTGGTGGACGTTATGAAAAAAAAAGGAATGAGAGATATTATGAAGGGAAGGGTAGCAGCACACAGAAGATCAAGATGAGATCTCTTAGTATTATATTTTTTTGGTGTAAGCAAGATTTAGTGGGGACAATAGATAGCTTAGTGGAGATTATAGGCCAACTGTAAATTTTTGAAAGTTTGTTTTTGGATTTTGAGTATGATGGCATCCCCTGGGGTTTGTAAATTCCTCCTCATCAGTCTGATGAGTTCTTTTGTGCGGATTTAAGTTACCTATTTCAAAATAAATAAATAAATAGAGGGGATGTAGAGGAGGATTTATGAGCTGACCCAAAGTCTCAAACTGTTTAGGATTGAGGCTTCATTAGTTGTTTCAAGAAGGGAAGCAACAATAATTGTGTGTTTGGTATGGAGGAAGCTTTGGTGTTATTTTACATTCTATTAGTGACATTACACTTTGGAGCTTCCTACTTTTAGAATATTACAGATATAGATGGATAGATGTTATGGCTCCGTTTTCACACCGCCTTACACTAGCTGGAAGTCTTGACAGCTGTATAACGCATACTTTCTGGTTATTTTCTTAGCATGCATCTTTGATATCATTCTGAATCTAAATTTTTATGTTTTCAGATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAGGTTGGTCCCCTGACTTGTGCTAACAGTAACATGAGAAGTAGTTTATGCAGTATCATGATGCATAGCTCCTCATGACATGTAATGCACTAATAATAGGTCTGCCACCAGTAACACCATAGGAAATAAACATAAATGGAAAGGAAAGGCTTTCATTTTCTCTTTTATTTAGCCCTTTTTAATCCTTAACATAATGTATTAGTGATGTGCACCTTGACCTATTAATACTTCTGCTGCTGTCTTTCTGGCAGTGACAAGGTCTTCAAAATTGAGTTCTCATATTTGTGATTCTCAACTCTAGTTCATTGACTTATGCTATAAATGTAGCACCAGTGATGGATTTAGTACTGTCTTCTACCATTGCGATCATAATAGCGAGCCAAAAATAGCTCTTCATAACATAAGCATGACAAGCGTGCCGTCTTCATACAAGTTAGGTTGTGTGATTATACAAGCCAGATGAAAAAGTGATGAAAATGGTTCCATATGTTTGGTAGGTTCAAGTTGGTCCCTTAATACTCTTGAACAATTTTGGTCCTTTAAGTTCACCAAAAGCGAAAACACCCTTTGGGGGGGGGGGCAGTGGTTTGGGCTTGGGGCTTCCATTTTGGAGGTTTCAAGTTCGAAACCCCTTGCTAGCAAAAGCAAGGGTCCAGTTTAGAAAATCAAGAGATAATTTACCTTTTGTGTCCTTTGTTATTAAATACTATTTATCATCTAACACATTTTCCAGAGCATTAAATTTAATAAAGTCAAAGGATAAAATAGTAATGTTACCGCTATTATTTATTGTTTCTTAAGGGTGTGCTAAGTCAATAGTAGACAACTATTGTTGGACCAAGGGAGTAACATCTATAGTTTCAACGTTTGCCAGCTTGCTAATTTTGGTTTATTTTTGGAGGATGGTGCAGCTTTTGAAGTGCAATTTTGCCATCTTTTAATATCTATTGTGTGGTATATGGTTCAATTTTTGGTGTTGCAATTTTCAAGATAGGACAGGACTTTTTGGTGTTTTTGGTTGGATAGTTATTTTGACCATTCCGATGAAGTCTACCCATTCAAGTTCTGTTTAAAAAAAAAAAGGGTCCAACCACTTGAGTTCTGTTTCAAAAAAAAAAGTCTTAACCATCCGAGTTTGTTAAATATTTGTCAGAGACCAAATGCTCACTTTTGGCAAACTTAGAAAACCCAAATTGTTGGGGGGTATATTGAAGGACCACCTTGAACCTATACTCAAACATAAGGAGCCATTTTTTCTCTCTCTCCAAGTTAGACACTTCCTTTTGACTTACTCTTTAATCTTCAAGATTTTGTGGTTTCCTGTAATAGCTGAAGCTACCTTCCATTTATTTTTGTCCATTTCTGTCTACCTTGTCTCAGTCCATTCCAGATTGCCTCTCTCTTTCTATTGGAATTGAAGGATGTGCTGTGTGCATCTGGATTTTCTCCAATTCCAACATAATCTGATATTGATTGAAAAGAGGGAAGTTAAGCTAGCTAACGAAGGGGTTGGGATCCGCCTCGCCCTTAAAGATCCGCCCCTCGTTTCACTCTGAAAATTTATTATCAGCTCCTTCTGTTATTTAGCCATCTCTCTCCATAAAATTCTTTCACGTACATGAAAGTTATTTCATATCCTAGAGAGTGCGGTTGTATTGTCTCTCTAAAGAATCGTAGGATCCATTGGAGATAAAATGAAACAATTTTAAATGCCGAGTGTTCTGTTTCCTTTTTTTCCTTTGGTCGTTTCTCTTTCTGCAGTGCTGTTACTGCTTAGAATACCTTTCGGTTCGCAGAAATGATGTGCAAACTTTGTTGTTTCCAACAGTTTGGCCATTGTATATATTGGGGTTGTTAAGTCTTTCTCTTTTATAGTATGCGTGACTCATTTAAAATCATCTTATATTATGTTGATTATTGTTATCCTCTTTTATTTGTTAGATGAGATTATTGTTATTATTGATTCATCTGAACATATATATATTTCAATCTTGCAGCATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAGGTATACTTTGTCAGTTATGTTTTGGTTGTATTTTGATATTTGTGAGAGAATTTTTAACACAATTCTTTTATTTCCAGCACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAGGTACATCAATATCCTAGCAACTGTGTGGATGACCTTTTCCATGCTTAAGTGTGTCATAGATCACTAAACTTATTCCGAAATGCAGGAAATGGAATTTGCTCATTCTATAC</genome_strand>
        <mrna_strand>AAAAAATATGAAACAAAACACCTTCCATAAACAAAGTGACGACGACGTCGGATTAAGTCCCTCGCAGAAACCCCAAATCGAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTTCTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAGGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATGTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAGACCAGTCCCCAACGATACCAAGAAGAATATAGCATACTTCAGTCATGGGCCTATAGTTCACTGGATCTGTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGTTGCTTCGAGTATTATATCCTGTATTTATTCATTGCTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAG.............................................................................CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAG.....................................................................................GAAACGGAATTTGCTCATTCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542658" ref_strand="+" ref_description="SGN-E542658 [TUS-64-B4]">
      <seq>aaaaaatataaaacaaaacaccttccataaacaaagtgacgactacgtcttattaagtccctccagaaaccccaaatcaaaattctcggtcctataaaccccaggtgttttcttcttcttcttcccaattctcaaaatcttaccatttctcgccatggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaagcaaacggagattgcttttcaagaagaacagcaagtgaataaaaacagttcttcttcaatccataataacaacaactcagcaaattctcagattgaccccgacttaaccaaaaaaatcctttctttctctgaatttgaaaccagtcccctacgataccaagaagaatatagcatacttcagtcatgggcctatagttcactggatctgtataagcatgagttgcttcgagtattatatcctgtatttattcattgcttcatggaacttgtcgctagaggttatattctagaagcacgagcctttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40461" stop="44864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40761" g_stop="41105" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42279" g_stop="42360" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="427" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994">
            <donor d_prob="0.815" d_score="0.96"/>
            <acceptor a_prob="0.329" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44355" g_stop="44433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="506" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44511" g_stop="44565" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="561" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E542658" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40761" e_stop="41105"/>
          <exon e_start="42279" e_stop="42360"/>
          <exon e_start="44355" e_stop="44433"/>
          <exon e_start="44511" e_stop="44565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATATAAAACAAAACACCTTCCATAAACAAAGTGACGACGACGTCGTATTAAGTCCCTCCAGAAACCCCAAATCAAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTTCTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGAGTAAGTTTCTTTTTTCCACTTAATTTGATGTAAAAATTACTGTTTGGCTAAGAGGATTAAGTTCTAAAATCAATTTACCTTGAAAGATAGTTTAATTTCAATGAAACACGTTTAAGTAGAGAAGGATTGAGTACAGAAGATCTGAAAACTAGTTTAGGGTTGAGAGGTGACTTGGTTGTTGGAAGAAAAGCAGGAGCAATATAATTGAAGCAGTTTTTCTGCACCCTCCAGTAGCATTTCTGCAAATGCCCAAATTGACCCTGAACCGTCAGACAAAAATAATCTGTTCTCTGTAGATAACATAAATTTAATTACTGGACCCATTCTAAAGAGGGAGAAATCAGCACTACTTGGTGAAATAGGTTCTTTTTGAATCAATTGTCCTCTTCTCCTGTATTTTAAATGCAGAGTGCTTAGCCATGAGGTTGCGGTTCTAAATAGCATTGACAATGCCCAGAACCACTTTTGAGGTACTAGCACACTGTCTAGGAATTGGAAAGAGAGGATCAAAGGAAATTTGGCGGAAGAATATCCCTGTTTGTATCTGGTGGACGTTATGAAAAAAAAAGGAATGAGAGATATTATGAAGGGAAGGGTAGCAGCACACAGAAGATCAAGATGAGATCTCTTAGTATTATATTTTTTTGGTGTAAGCAAGATTTAGTGGGGACAATAGATAGCTTAGTGGAGATTATAGGCCAACTGTAAATTTTTGAAAGTTTGTTTTTGGATTTTGAGTATGATGGCATCCCCTGGGGTTTGTAAATTCCTCCTCATCAGTCTGATGAGTTCTTTTGTGCGGATTTAAGTTACCTATTTCAAAATAAATAAATAAATAGAGGGGATGTAGAGGAGGATTTATGAGCTGACCCAAAGTCTCAAACTGTTTAGGATTGAGGCTTCATTAGTTGTTTCAAGAAGGGAAGCAACAATAATTGTGTGTTTGGTATGGAGGAAGCTTTGGTGTTATTTTACATTCTATTAGTGACATTACACTTTGGAGCTTCCTACTTTTAGAATATTACAGATATAGATGGATAGATGTTATGGCTCCGTTTTCACACCGCCTTACACTAGCTGGAAGTCTTGACAGCTGTATAACGCATACTTTCTGGTTATTTTCTTAGCATGCATCTTTGATATCATTCTGAATCTAAATTTTTATGTTTTCAGATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAGGTTGGTCCCCTGACTTGTGCTAACAGTAACATGAGAAGTAGTTTATGCAGTATCATGATGCATAGCTCCTCATGACATGTAATGCACTAATAATAGGTCTGCCACCAGTAACACCATAGGAAATAAACATAAATGGAAAGGAAAGGCTTTCATTTTCTCTTTTATTTAGCCCTTTTTAATCCTTAACATAATGTATTAGTGATGTGCACCTTGACCTATTAATACTTCTGCTGCTGTCTTTCTGGCAGTGACAAGGTCTTCAAAATTGAGTTCTCATATTTGTGATTCTCAACTCTAGTTCATTGACTTATGCTATAAATGTAGCACCAGTGATGGATTTAGTACTGTCTTCTACCATTGCGATCATAATAGCGAGCCAAAAATAGCTCTTCATAACATAAGCATGACAAGCGTGCCGTCTTCATACAAGTTAGGTTGTGTGATTATACAAGCCAGATGAAAAAGTGATGAAAATGGTTCCATATGTTTGGTAGGTTCAAGTTGGTCCCTTAATACTCTTGAACAATTTTGGTCCTTTAAGTTCACCAAAAGCGAAAACACCCTTTGGGGGGGGGGGCAGTGGTTTGGGCTTGGGGCTTCCATTTTGGAGGTTTCAAGTTCGAAACCCCTTGCTAGCAAAAGCAAGGGTCCAGTTTAGAAAATCAAGAGATAATTTACCTTTTGTGTCCTTTGTTATTAAATACTATTTATCATCTAACACATTTTCCAGAGCATTAAATTTAATAAAGTCAAAGGATAAAATAGTAATGTTACCGCTATTATTTATTGTTTCTTAAGGGTGTGCTAAGTCAATAGTAGACAACTATTGTTGGACCAAGGGAGTAACATCTATAGTTTCAACGTTTGCCAGCTTGCTAATTTTGGTTTATTTTTGGAGGATGGTGCAGCTTTTGAAGTGCAATTTTGCCATCTTTTAATATCTATTGTGTGGTATATGGTTCAATTTTTGGTGTTGCAATTTTCAAGATAGGACAGGACTTTTTGGTGTTTTTGGTTGGATAGTTATTTTGACCATTCCGATGAAGTCTACCCATTCAAGTTCTGTTTAAAAAAAAAAAGGGTCCAACCACTTGAGTTCTGTTTCAAAAAAAAAAGTCTTAACCATCCGAGTTTGTTAAATATTTGTCAGAGACCAAATGCTCACTTTTGGCAAACTTAGAAAACCCAAATTGTTGGGGGGTATATTGAAGGACCACCTTGAACCTATACTCAAACATAAGGAGCCATTTTTTCTCTCTCTCCAAGTTAGACACTTCCTTTTGACTTACTCTTTAATCTTCAAGATTTTGTGGTTTCCTGTAATAGCTGAAGCTACCTTCCATTTATTTTTGTCCATTTCTGTCTACCTTGTCTCAGTCCATTCCAGATTGCCTCTCTCTTTCTATTGGAATTGAAGGATGTGCTGTGTGCATCTGGATTTTCTCCAATTCCAACATAATCTGATATTGATTGAAAAGAGGGAAGTTAAGCTAGCTAACGAAGGGGTTGGGATCCGCCTCGCCCTTAAAGATCCGCCCCTCGTTTCACTCTGAAAATTTATTATCAGCTCCTTCTGTTATTTAGCCATCTCTCTCCATAAAATTCTTTCACGTACATGAAAGTTATTTCATATCCTAGAGAGTGCGGTTGTATTGTCTCTCTAAAGAATCGTAGGATCCATTGGAGATAAAATGAAACAATTTTAAATGCCGAGTGTTCTGTTTCCTTTTTTTCCTTTGGTCGTTTCTCTTTCTGCAGTGCTGTTACTGCTTAGAATACCTTTCGGTTCGCAGAAATGATGTGCAAACTTTGTTGTTTCCAACAGTTTGGCCATTGTATATATTGGGGTTGTTAAGTCTTTCTCTTTTATAGTATGCGTGACTCATTTAAAATCATCTTATATTATGTTGATTATTGTTATCCTCTTTTATTTGTTAGATGAGATTATTGTTATTATTGATTCATCTGAACATATATATATTTCAATCTTGCAGCATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAGGTATACTTTGTCAGTTATGTTTTGGTTGTATTTTGATATTTGTGAGAGAATTTTTAACACAATTCTTTTATTTCCAGCACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGA</genome_strand>
        <mrna_strand>AAAAAATATAAAACAAAACACCTTCCATAAACAAAGTGACGACTACGTCTTATTAAGTCCCTCCAGAAACCCCAAATCAAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTTCTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAACCAGTCCCCTACGATACCAAGAAGAATATAGCATACTTCAGTCATGGGCCTATAGTTCACTGGATCTGTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGTTGCTTCGAGTATTATATCCTGTATTTATTCATTGCTTCATGGAACTTGTCGCTAGAGGTTATATTCTAGAAG.............................................................................CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301411" ref_strand="+" ref_description="SGN-E301411 [cLEX-8-C20]">
      <seq>aatcttaccatttctcgccatggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaagcaaacggagattgcttttcaagaagaacagcaagtgaataaaaacagttcttcttcaatccataataacaacaactcagcaaattctcagattgaccccgacttaaccaaaaaaatcctttctttctctgaatttgaaaccagtccccaacgataccaagaagaatatagcaaacttcggtcatgggcctatagttcactggatctgtataagcatgagttgcttcgtgttttatatcctgtatttattcattgtttcatggaacttgtcgctagaggttatattcaagaagcacgagcctttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgatcttcagaagttagaaggcgtcctctcaccttcccatctagaggaaatggaatttgctcattctatacgggtgagcaaagtgaacattaagatgtgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40596" stop="45050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40896" g_stop="41105" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42279" g_stop="42360" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="292" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.329" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44355" g_stop="44433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="371" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44511" g_stop="44608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="469" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44750" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="526" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E301411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40896" e_stop="41105"/>
          <exon e_start="42279" e_stop="42360"/>
          <exon e_start="44355" e_stop="44433"/>
          <exon e_start="44511" e_stop="44608"/>
          <exon e_start="44694" e_stop="44750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGAGTAAGTTTCTTTTTTCCACTTAATTTGATGTAAAAATTACTGTTTGGCTAAGAGGATTAAGTTCTAAAATCAATTTACCTTGAAAGATAGTTTAATTTCAATGAAACACGTTTAAGTAGAGAAGGATTGAGTACAGAAGATCTGAAAACTAGTTTAGGGTTGAGAGGTGACTTGGTTGTTGGAAGAAAAGCAGGAGCAATATAATTGAAGCAGTTTTTCTGCACCCTCCAGTAGCATTTCTGCAAATGCCCAAATTGACCCTGAACCGTCAGACAAAAATAATCTGTTCTCTGTAGATAACATAAATTTAATTACTGGACCCATTCTAAAGAGGGAGAAATCAGCACTACTTGGTGAAATAGGTTCTTTTTGAATCAATTGTCCTCTTCTCCTGTATTTTAAATGCAGAGTGCTTAGCCATGAGGTTGCGGTTCTAAATAGCATTGACAATGCCCAGAACCACTTTTGAGGTACTAGCACACTGTCTAGGAATTGGAAAGAGAGGATCAAAGGAAATTTGGCGGAAGAATATCCCTGTTTGTATCTGGTGGACGTTATGAAAAAAAAAGGAATGAGAGATATTATGAAGGGAAGGGTAGCAGCACACAGAAGATCAAGATGAGATCTCTTAGTATTATATTTTTTTGGTGTAAGCAAGATTTAGTGGGGACAATAGATAGCTTAGTGGAGATTATAGGCCAACTGTAAATTTTTGAAAGTTTGTTTTTGGATTTTGAGTATGATGGCATCCCCTGGGGTTTGTAAATTCCTCCTCATCAGTCTGATGAGTTCTTTTGTGCGGATTTAAGTTACCTATTTCAAAATAAATAAATAAATAGAGGGGATGTAGAGGAGGATTTATGAGCTGACCCAAAGTCTCAAACTGTTTAGGATTGAGGCTTCATTAGTTGTTTCAAGAAGGGAAGCAACAATAATTGTGTGTTTGGTATGGAGGAAGCTTTGGTGTTATTTTACATTCTATTAGTGACATTACACTTTGGAGCTTCCTACTTTTAGAATATTACAGATATAGATGGATAGATGTTATGGCTCCGTTTTCACACCGCCTTACACTAGCTGGAAGTCTTGACAGCTGTATAACGCATACTTTCTGGTTATTTTCTTAGCATGCATCTTTGATATCATTCTGAATCTAAATTTTTATGTTTTCAGATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAGGTTGGTCCCCTGACTTGTGCTAACAGTAACATGAGAAGTAGTTTATGCAGTATCATGATGCATAGCTCCTCATGACATGTAATGCACTAATAATAGGTCTGCCACCAGTAACACCATAGGAAATAAACATAAATGGAAAGGAAAGGCTTTCATTTTCTCTTTTATTTAGCCCTTTTTAATCCTTAACATAATGTATTAGTGATGTGCACCTTGACCTATTAATACTTCTGCTGCTGTCTTTCTGGCAGTGACAAGGTCTTCAAAATTGAGTTCTCATATTTGTGATTCTCAACTCTAGTTCATTGACTTATGCTATAAATGTAGCACCAGTGATGGATTTAGTACTGTCTTCTACCATTGCGATCATAATAGCGAGCCAAAAATAGCTCTTCATAACATAAGCATGACAAGCGTGCCGTCTTCATACAAGTTAGGTTGTGTGATTATACAAGCCAGATGAAAAAGTGATGAAAATGGTTCCATATGTTTGGTAGGTTCAAGTTGGTCCCTTAATACTCTTGAACAATTTTGGTCCTTTAAGTTCACCAAAAGCGAAAACACCCTTTGGGGGGGGGGGCAGTGGTTTGGGCTTGGGGCTTCCATTTTGGAGGTTTCAAGTTCGAAACCCCTTGCTAGCAAAAGCAAGGGTCCAGTTTAGAAAATCAAGAGATAATTTACCTTTTGTGTCCTTTGTTATTAAATACTATTTATCATCTAACACATTTTCCAGAGCATTAAATTTAATAAAGTCAAAGGATAAAATAGTAATGTTACCGCTATTATTTATTGTTTCTTAAGGGTGTGCTAAGTCAATAGTAGACAACTATTGTTGGACCAAGGGAGTAACATCTATAGTTTCAACGTTTGCCAGCTTGCTAATTTTGGTTTATTTTTGGAGGATGGTGCAGCTTTTGAAGTGCAATTTTGCCATCTTTTAATATCTATTGTGTGGTATATGGTTCAATTTTTGGTGTTGCAATTTTCAAGATAGGACAGGACTTTTTGGTGTTTTTGGTTGGATAGTTATTTTGACCATTCCGATGAAGTCTACCCATTCAAGTTCTGTTTAAAAAAAAAAAGGGTCCAACCACTTGAGTTCTGTTTCAAAAAAAAAAGTCTTAACCATCCGAGTTTGTTAAATATTTGTCAGAGACCAAATGCTCACTTTTGGCAAACTTAGAAAACCCAAATTGTTGGGGGGTATATTGAAGGACCACCTTGAACCTATACTCAAACATAAGGAGCCATTTTTTCTCTCTCTCCAAGTTAGACACTTCCTTTTGACTTACTCTTTAATCTTCAAGATTTTGTGGTTTCCTGTAATAGCTGAAGCTACCTTCCATTTATTTTTGTCCATTTCTGTCTACCTTGTCTCAGTCCATTCCAGATTGCCTCTCTCTTTCTATTGGAATTGAAGGATGTGCTGTGTGCATCTGGATTTTCTCCAATTCCAACATAATCTGATATTGATTGAAAAGAGGGAAGTTAAGCTAGCTAACGAAGGGGTTGGGATCCGCCTCGCCCTTAAAGATCCGCCCCTCGTTTCACTCTGAAAATTTATTATCAGCTCCTTCTGTTATTTAGCCATCTCTCTCCATAAAATTCTTTCACGTACATGAAAGTTATTTCATATCCTAGAGAGTGCGGTTGTATTGTCTCTCTAAAGAATCGTAGGATCCATTGGAGATAAAATGAAACAATTTTAAATGCCGAGTGTTCTGTTTCCTTTTTTTCCTTTGGTCGTTTCTCTTTCTGCAGTGCTGTTACTGCTTAGAATACCTTTCGGTTCGCAGAAATGATGTGCAAACTTTGTTGTTTCCAACAGTTTGGCCATTGTATATATTGGGGTTGTTAAGTCTTTCTCTTTTATAGTATGCGTGACTCATTTAAAATCATCTTATATTATGTTGATTATTGTTATCCTCTTTTATTTGTTAGATGAGATTATTGTTATTATTGATTCATCTGAACATATATATATTTCAATCTTGCAGCATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAGGTATACTTTGTCAGTTATGTTTTGGTTGTATTTTGATATTTGTGAGAGAATTTTTAACACAATTCTTTTATTTCCAGCACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAGGTACATCAATATCCTAGCAACTGTGTGGATGACCTTTTCCATGCTTAAGTGTGTCATAGATCACTAAACTTATTCCGAAATGCAGGAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG</genome_strand>
        <mrna_strand>AATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAG.............................................................................CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAG.....................................................................................GAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740065" ref_strand="+" ref_description="SGN-E740065 [LC19DG09]">
      <seq>atttctcgccatggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaagcaaacggagattgcttttcaagaagaacagcaagtgaataaaaacagttcttcttcaatccataataacaacaactcagcaaattctcagattgaccccgacttaaccaaaaaaatcctttctttctctgaatttgaaaccagtccccaacgataccaagaagaatatagcaaacttcggtcatgggcctatagttcactggatctgtataagcatgagttgcttcgtgttttatatcctgtatttattcattgtttcatggaacttgtcgctagaggttatattcaagaagcacgagcctttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgatcttcagaagttagaaggcgtcctctcaccttcccatctagaggaaatggaatttgctcattctatacgggtgagcaaagtgaacattaagatgtgtcagtactcctatgaccttctgttgcaatacttgcacaagacagaatctattacaatgcttgggatcatcaatgagcgcattaattttcaagtttctcctggacagcctggctctatatctggtgatacggaagttgtaactcttgttgcaagtggccatgatgctagtctcataaatcagaaagaagttctttggggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40605" stop="47531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40905" g_stop="41105" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42279" g_stop="42360" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="283" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.329" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44355" g_stop="44433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="362" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44511" g_stop="44608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="460" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44750" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="517" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44751" i_stop="45324" i_length="574">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45325" g_stop="45412" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="605" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45413" i_stop="47119" i_length="1707">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47120" g_stop="47226" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="712" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E740065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40905" e_stop="41105"/>
          <exon e_start="42279" e_stop="42360"/>
          <exon e_start="44355" e_stop="44433"/>
          <exon e_start="44511" e_stop="44608"/>
          <exon e_start="44694" e_stop="44750"/>
          <exon e_start="45325" e_stop="45412"/>
          <exon e_start="47120" e_stop="47226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGAGTAAGTTTCTTTTTTCCACTTAATTTGATGTAAAAATTACTGTTTGGCTAAGAGGATTAAGTTCTAAAATCAATTTACCTTGAAAGATAGTTTAATTTCAATGAAACACGTTTAAGTAGAGAAGGATTGAGTACAGAAGATCTGAAAACTAGTTTAGGGTTGAGAGGTGACTTGGTTGTTGGAAGAAAAGCAGGAGCAATATAATTGAAGCAGTTTTTCTGCACCCTCCAGTAGCATTTCTGCAAATGCCCAAATTGACCCTGAACCGTCAGACAAAAATAATCTGTTCTCTGTAGATAACATAAATTTAATTACTGGACCCATTCTAAAGAGGGAGAAATCAGCACTACTTGGTGAAATAGGTTCTTTTTGAATCAATTGTCCTCTTCTCCTGTATTTTAAATGCAGAGTGCTTAGCCATGAGGTTGCGGTTCTAAATAGCATTGACAATGCCCAGAACCACTTTTGAGGTACTAGCACACTGTCTAGGAATTGGAAAGAGAGGATCAAAGGAAATTTGGCGGAAGAATATCCCTGTTTGTATCTGGTGGACGTTATGAAAAAAAAAGGAATGAGAGATATTATGAAGGGAAGGGTAGCAGCACACAGAAGATCAAGATGAGATCTCTTAGTATTATATTTTTTTGGTGTAAGCAAGATTTAGTGGGGACAATAGATAGCTTAGTGGAGATTATAGGCCAACTGTAAATTTTTGAAAGTTTGTTTTTGGATTTTGAGTATGATGGCATCCCCTGGGGTTTGTAAATTCCTCCTCATCAGTCTGATGAGTTCTTTTGTGCGGATTTAAGTTACCTATTTCAAAATAAATAAATAAATAGAGGGGATGTAGAGGAGGATTTATGAGCTGACCCAAAGTCTCAAACTGTTTAGGATTGAGGCTTCATTAGTTGTTTCAAGAAGGGAAGCAACAATAATTGTGTGTTTGGTATGGAGGAAGCTTTGGTGTTATTTTACATTCTATTAGTGACATTACACTTTGGAGCTTCCTACTTTTAGAATATTACAGATATAGATGGATAGATGTTATGGCTCCGTTTTCACACCGCCTTACACTAGCTGGAAGTCTTGACAGCTGTATAACGCATACTTTCTGGTTATTTTCTTAGCATGCATCTTTGATATCATTCTGAATCTAAATTTTTATGTTTTCAGATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAGGTTGGTCCCCTGACTTGTGCTAACAGTAACATGAGAAGTAGTTTATGCAGTATCATGATGCATAGCTCCTCATGACATGTAATGCACTAATAATAGGTCTGCCACCAGTAACACCATAGGAAATAAACATAAATGGAAAGGAAAGGCTTTCATTTTCTCTTTTATTTAGCCCTTTTTAATCCTTAACATAATGTATTAGTGATGTGCACCTTGACCTATTAATACTTCTGCTGCTGTCTTTCTGGCAGTGACAAGGTCTTCAAAATTGAGTTCTCATATTTGTGATTCTCAACTCTAGTTCATTGACTTATGCTATAAATGTAGCACCAGTGATGGATTTAGTACTGTCTTCTACCATTGCGATCATAATAGCGAGCCAAAAATAGCTCTTCATAACATAAGCATGACAAGCGTGCCGTCTTCATACAAGTTAGGTTGTGTGATTATACAAGCCAGATGAAAAAGTGATGAAAATGGTTCCATATGTTTGGTAGGTTCAAGTTGGTCCCTTAATACTCTTGAACAATTTTGGTCCTTTAAGTTCACCAAAAGCGAAAACACCCTTTGGGGGGGGGGGCAGTGGTTTGGGCTTGGGGCTTCCATTTTGGAGGTTTCAAGTTCGAAACCCCTTGCTAGCAAAAGCAAGGGTCCAGTTTAGAAAATCAAGAGATAATTTACCTTTTGTGTCCTTTGTTATTAAATACTATTTATCATCTAACACATTTTCCAGAGCATTAAATTTAATAAAGTCAAAGGATAAAATAGTAATGTTACCGCTATTATTTATTGTTTCTTAAGGGTGTGCTAAGTCAATAGTAGACAACTATTGTTGGACCAAGGGAGTAACATCTATAGTTTCAACGTTTGCCAGCTTGCTAATTTTGGTTTATTTTTGGAGGATGGTGCAGCTTTTGAAGTGCAATTTTGCCATCTTTTAATATCTATTGTGTGGTATATGGTTCAATTTTTGGTGTTGCAATTTTCAAGATAGGACAGGACTTTTTGGTGTTTTTGGTTGGATAGTTATTTTGACCATTCCGATGAAGTCTACCCATTCAAGTTCTGTTTAAAAAAAAAAAGGGTCCAACCACTTGAGTTCTGTTTCAAAAAAAAAAGTCTTAACCATCCGAGTTTGTTAAATATTTGTCAGAGACCAAATGCTCACTTTTGGCAAACTTAGAAAACCCAAATTGTTGGGGGGTATATTGAAGGACCACCTTGAACCTATACTCAAACATAAGGAGCCATTTTTTCTCTCTCTCCAAGTTAGACACTTCCTTTTGACTTACTCTTTAATCTTCAAGATTTTGTGGTTTCCTGTAATAGCTGAAGCTACCTTCCATTTATTTTTGTCCATTTCTGTCTACCTTGTCTCAGTCCATTCCAGATTGCCTCTCTCTTTCTATTGGAATTGAAGGATGTGCTGTGTGCATCTGGATTTTCTCCAATTCCAACATAATCTGATATTGATTGAAAAGAGGGAAGTTAAGCTAGCTAACGAAGGGGTTGGGATCCGCCTCGCCCTTAAAGATCCGCCCCTCGTTTCACTCTGAAAATTTATTATCAGCTCCTTCTGTTATTTAGCCATCTCTCTCCATAAAATTCTTTCACGTACATGAAAGTTATTTCATATCCTAGAGAGTGCGGTTGTATTGTCTCTCTAAAGAATCGTAGGATCCATTGGAGATAAAATGAAACAATTTTAAATGCCGAGTGTTCTGTTTCCTTTTTTTCCTTTGGTCGTTTCTCTTTCTGCAGTGCTGTTACTGCTTAGAATACCTTTCGGTTCGCAGAAATGATGTGCAAACTTTGTTGTTTCCAACAGTTTGGCCATTGTATATATTGGGGTTGTTAAGTCTTTCTCTTTTATAGTATGCGTGACTCATTTAAAATCATCTTATATTATGTTGATTATTGTTATCCTCTTTTATTTGTTAGATGAGATTATTGTTATTATTGATTCATCTGAACATATATATATTTCAATCTTGCAGCATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAGGTATACTTTGTCAGTTATGTTTTGGTTGTATTTTGATATTTGTGAGAGAATTTTTAACACAATTCTTTTATTTCCAGCACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAGGTACATCAATATCCTAGCAACTGTGTGGATGACCTTTTCCATGCTTAAGTGTGTCATAGATCACTAAACTTATTCCGAAATGCAGGAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAGGTATTCTCTTGATCCTTTTGCTTCCTCTGGTTGAATTTTTCTGCTACTATAGTGCACACTAATGTCTCAACTGTGAAAGCCAAGTGTGTCGGGGTTTGTTAGCAATTGGTGACAAATGCATATCGAGTTAGTAGTTACAAAGGAGGAAAAGAAACTAATGTGATATTTCACTTTAGAGTGCATTATCTTTCATTTCCTTCTCTTGACCACTTATTTTGCTGTGGAACTTCAACTTTTTGACAAAAAATCCACCTCTTTCCAAATCTTTTCTTTTGAAGCTGAACTTCTATTAGTTATGTTGATGAAATAGCAAACACTGGTTCATTTTGTAGGTTTGTTGGAATTAACTACAACATTTAGTCTATTGTTCTCATGCCATGGATCTTATCACCATGTATATTAAAGGAACAATCATTTGTCTAATGGTTTTTCTAGTTTGGTGGATTTACGTGCAGTTTGATTACTGTTTTTTGGTCAATATACATGTCTGGCACCATTTGATTACTTTTTACCACGCATACCTTTAGACTTAACTGGATTAGCCTTTTGATTTGCTTATTTTACTCTGAAACAGTACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTCAAGGTGCACTTCCCATTTTCGCAGTTGCTTTCAACCTTTCAATTTGCAACTATGTTAAATTGACCATTTTAATTTAGCGTAATCTTTTTTGATTAAGTAAAGTATTTCATTAAGAAAACAAGGCCGAGATGACTGTAAACAAGAGATATACCCTAAAAGAAGAAACCTACAAAAATATGGTTCACTCTAAAATACACCCAATCCTCTATACTAATAGGAACGACATGGTGCACCAAAAGAAAATAGGGAGTGGAGACTGCTACTTAGTTGAGCAAGGCTCATCTCCATTCCTTCAAAAGCCCCCATATTTCTCTCTCCAAATGACCCACGTTAAAGCAAGAGAAGTAACATTCCAAGCCTTTTGCCTTCTTCTCCTGGCACCAGTTGTCGAACTAAACATCAACTCTTTCACGGATCTTGGCATCAGCCCTGAAATGCCGAACCATCTAAAGATACCCTACCATAACCTCATTGCTAGATTGCAATGTAGCATAATATGATCCACGATCTCACCTGCCTCCTTACTAAGGAAACACCAACTAATACAGACAACTTTCCATTTCCTAACATTCTCCGCCGTCAAAATCACCCCTCTATAAACTAACCAAGTGAAGAAGCACCCCTTCCTTGGAATCCTAGGAATATCGTAAATATTTATTCCACCATGAAGTGTTTAGGAAGAAGCAGTTACATCTTTCCATTTATATTGGTATGATAGTGAAACCATATGAGAAGGAAGAAGAGAAATGTCTTTTCCTTGACCATTGTCCTTTAGAACAAATGCTCATCATTACATCCACTGAATAAAGACGGGGAAAGGAAAAGCGTTCCAATTTAAATTCAACTTCTTTCTGTCAGATCATTGTTTATTTTGTCCCTCCATGATCACTTAACCATCTCAATCCTCTGGAACCAAATTACATGACTAGAGGGGAACTGTCATGTTTATTATAAATAGTGGTGAATTTTACCATAATTACTTCCTTTATATTGCTTGGTTCTTCCATAGGTGTGCTCTCTAGCTTTTGTTTCTTGGTTCAAGGCTTGTTACTAACTCGAACAAACTCCAATACATTTTCCTTGGTAGCTAAAATTTATCAAGTTACAGGGAGAAAAAGAAATGAGAAAAGAAGTCTTTGATAAGATATTGCAGAGGTGGCTGTTTTTGTTGCTTAATTGTCATGTTATCGTGGGAGAACATGGTCACATAGGAGGTGTAACAAGTGGTGGTTTAACTAGCTATAGTGACTATGTGCCTTCACTGCTGCCTCTATTGGGTTCTGACCAAGGGAGGTTGCTAAAATTAAGGTCAAAGATTTATTGGAATGAAGAACAGTAATAAGAGTGAGTTATAGATGCAGAGGGTATTCCAGATCTATTTATAGGCCTTGAATTCTTTTCCTCTTTATCTCTTTCATTCGGATTCCACTTTTGCTTGTGCCAAGAAATGCCAAAGTCACTAGATGCACATGATTTACTCAATTAAGTTCATGGTATGTTTGGTGCAAGGCCGAAGACATGTTCTTCCCAGGTAGTCTGGCAATGTTCTAGCAAAAAATTGTCCTAAATGCAACCCTATGAATAGTTTAGTGGCCCATGATCCCCCTGTGCCTTGCCTATTACTCATTATATAATCATATGGTATAATTTTAGAGCTATGTATTTATTAAATTTAAGTACAACATGAAGCTAATTTGTATCAAATGACAGTTTCTCCTGGACAGCCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTGCAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGG</genome_strand>
        <mrna_strand>ATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAG.............................................................................CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAG.....................................................................................GAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCCTGGACAGCCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTGCAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323609" ref_strand="+" ref_description="SGN-E323609 [cTOC-2-F4]">
      <seq>ccatggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaagcaaacggagattgcttttcaagaagaacagcaagtgaataaaaacagttcttcttcaatccataataacaacaactcagcaaattctcagattgaccccgacttaaccaaaaaaatcctttctttctctgaatttgaaaccagtccccaacgataccaagaagaatatagcaaacttcggtcatgggcctatagttcactggatctgtataagcatgagttgcttcgtgttttatatcctgtatttattcattgtttcatggaacttgtcgctagaggttatattcaagaagcacgagcctttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgatcttcagaagttagaaggcgtcctctcaccttcccatctagaggaaatggaatttgctcattctatacgggtgagcaaagtgaacattaagatgtgtcagtactcctatgaccttctgttgcaatacttgcacaagacagaatctattacaatgcttgggatcatcaatgagcgcattaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40613" stop="45709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40913" g_stop="41105" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42279" g_stop="42360" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="275" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.329" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44355" g_stop="44433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44511" g_stop="44608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="452" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44694" g_stop="44750" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="509" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44751" i_stop="45324" i_length="574">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45325" g_stop="45409" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="594" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E323609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40913" e_stop="41105"/>
          <exon e_start="42279" e_stop="42360"/>
          <exon e_start="44355" e_stop="44433"/>
          <exon e_start="44511" e_stop="44608"/>
          <exon e_start="44694" e_stop="44750"/>
          <exon e_start="45325" e_stop="45409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGAGTAAGTTTCTTTTTTCCACTTAATTTGATGTAAAAATTACTGTTTGGCTAAGAGGATTAAGTTCTAAAATCAATTTACCTTGAAAGATAGTTTAATTTCAATGAAACACGTTTAAGTAGAGAAGGATTGAGTACAGAAGATCTGAAAACTAGTTTAGGGTTGAGAGGTGACTTGGTTGTTGGAAGAAAAGCAGGAGCAATATAATTGAAGCAGTTTTTCTGCACCCTCCAGTAGCATTTCTGCAAATGCCCAAATTGACCCTGAACCGTCAGACAAAAATAATCTGTTCTCTGTAGATAACATAAATTTAATTACTGGACCCATTCTAAAGAGGGAGAAATCAGCACTACTTGGTGAAATAGGTTCTTTTTGAATCAATTGTCCTCTTCTCCTGTATTTTAAATGCAGAGTGCTTAGCCATGAGGTTGCGGTTCTAAATAGCATTGACAATGCCCAGAACCACTTTTGAGGTACTAGCACACTGTCTAGGAATTGGAAAGAGAGGATCAAAGGAAATTTGGCGGAAGAATATCCCTGTTTGTATCTGGTGGACGTTATGAAAAAAAAAGGAATGAGAGATATTATGAAGGGAAGGGTAGCAGCACACAGAAGATCAAGATGAGATCTCTTAGTATTATATTTTTTTGGTGTAAGCAAGATTTAGTGGGGACAATAGATAGCTTAGTGGAGATTATAGGCCAACTGTAAATTTTTGAAAGTTTGTTTTTGGATTTTGAGTATGATGGCATCCCCTGGGGTTTGTAAATTCCTCCTCATCAGTCTGATGAGTTCTTTTGTGCGGATTTAAGTTACCTATTTCAAAATAAATAAATAAATAGAGGGGATGTAGAGGAGGATTTATGAGCTGACCCAAAGTCTCAAACTGTTTAGGATTGAGGCTTCATTAGTTGTTTCAAGAAGGGAAGCAACAATAATTGTGTGTTTGGTATGGAGGAAGCTTTGGTGTTATTTTACATTCTATTAGTGACATTACACTTTGGAGCTTCCTACTTTTAGAATATTACAGATATAGATGGATAGATGTTATGGCTCCGTTTTCACACCGCCTTACACTAGCTGGAAGTCTTGACAGCTGTATAACGCATACTTTCTGGTTATTTTCTTAGCATGCATCTTTGATATCATTCTGAATCTAAATTTTTATGTTTTCAGATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAGGTTGGTCCCCTGACTTGTGCTAACAGTAACATGAGAAGTAGTTTATGCAGTATCATGATGCATAGCTCCTCATGACATGTAATGCACTAATAATAGGTCTGCCACCAGTAACACCATAGGAAATAAACATAAATGGAAAGGAAAGGCTTTCATTTTCTCTTTTATTTAGCCCTTTTTAATCCTTAACATAATGTATTAGTGATGTGCACCTTGACCTATTAATACTTCTGCTGCTGTCTTTCTGGCAGTGACAAGGTCTTCAAAATTGAGTTCTCATATTTGTGATTCTCAACTCTAGTTCATTGACTTATGCTATAAATGTAGCACCAGTGATGGATTTAGTACTGTCTTCTACCATTGCGATCATAATAGCGAGCCAAAAATAGCTCTTCATAACATAAGCATGACAAGCGTGCCGTCTTCATACAAGTTAGGTTGTGTGATTATACAAGCCAGATGAAAAAGTGATGAAAATGGTTCCATATGTTTGGTAGGTTCAAGTTGGTCCCTTAATACTCTTGAACAATTTTGGTCCTTTAAGTTCACCAAAAGCGAAAACACCCTTTGGGGGGGGGGGCAGTGGTTTGGGCTTGGGGCTTCCATTTTGGAGGTTTCAAGTTCGAAACCCCTTGCTAGCAAAAGCAAGGGTCCAGTTTAGAAAATCAAGAGATAATTTACCTTTTGTGTCCTTTGTTATTAAATACTATTTATCATCTAACACATTTTCCAGAGCATTAAATTTAATAAAGTCAAAGGATAAAATAGTAATGTTACCGCTATTATTTATTGTTTCTTAAGGGTGTGCTAAGTCAATAGTAGACAACTATTGTTGGACCAAGGGAGTAACATCTATAGTTTCAACGTTTGCCAGCTTGCTAATTTTGGTTTATTTTTGGAGGATGGTGCAGCTTTTGAAGTGCAATTTTGCCATCTTTTAATATCTATTGTGTGGTATATGGTTCAATTTTTGGTGTTGCAATTTTCAAGATAGGACAGGACTTTTTGGTGTTTTTGGTTGGATAGTTATTTTGACCATTCCGATGAAGTCTACCCATTCAAGTTCTGTTTAAAAAAAAAAAGGGTCCAACCACTTGAGTTCTGTTTCAAAAAAAAAAGTCTTAACCATCCGAGTTTGTTAAATATTTGTCAGAGACCAAATGCTCACTTTTGGCAAACTTAGAAAACCCAAATTGTTGGGGGGTATATTGAAGGACCACCTTGAACCTATACTCAAACATAAGGAGCCATTTTTTCTCTCTCTCCAAGTTAGACACTTCCTTTTGACTTACTCTTTAATCTTCAAGATTTTGTGGTTTCCTGTAATAGCTGAAGCTACCTTCCATTTATTTTTGTCCATTTCTGTCTACCTTGTCTCAGTCCATTCCAGATTGCCTCTCTCTTTCTATTGGAATTGAAGGATGTGCTGTGTGCATCTGGATTTTCTCCAATTCCAACATAATCTGATATTGATTGAAAAGAGGGAAGTTAAGCTAGCTAACGAAGGGGTTGGGATCCGCCTCGCCCTTAAAGATCCGCCCCTCGTTTCACTCTGAAAATTTATTATCAGCTCCTTCTGTTATTTAGCCATCTCTCTCCATAAAATTCTTTCACGTACATGAAAGTTATTTCATATCCTAGAGAGTGCGGTTGTATTGTCTCTCTAAAGAATCGTAGGATCCATTGGAGATAAAATGAAACAATTTTAAATGCCGAGTGTTCTGTTTCCTTTTTTTCCTTTGGTCGTTTCTCTTTCTGCAGTGCTGTTACTGCTTAGAATACCTTTCGGTTCGCAGAAATGATGTGCAAACTTTGTTGTTTCCAACAGTTTGGCCATTGTATATATTGGGGTTGTTAAGTCTTTCTCTTTTATAGTATGCGTGACTCATTTAAAATCATCTTATATTATGTTGATTATTGTTATCCTCTTTTATTTGTTAGATGAGATTATTGTTATTATTGATTCATCTGAACATATATATATTTCAATCTTGCAGCATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAGGTATACTTTGTCAGTTATGTTTTGGTTGTATTTTGATATTTGTGAGAGAATTTTTAACACAATTCTTTTATTTCCAGCACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAGGTACATCAATATCCTAGCAACTGTGTGGATGACCTTTTCCATGCTTAAGTGTGTCATAGATCACTAAACTTATTCCGAAATGCAGGAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAGGTATTCTCTTGATCCTTTTGCTTCCTCTGGTTGAATTTTTCTGCTACTATAGTGCACACTAATGTCTCAACTGTGAAAGCCAAGTGTGTCGGGGTTTGTTAGCAATTGGTGACAAATGCATATCGAGTTAGTAGTTACAAAGGAGGAAAAGAAACTAATGTGATATTTCACTTTAGAGTGCATTATCTTTCATTTCCTTCTCTTGACCACTTATTTTGCTGTGGAACTTCAACTTTTTGACAAAAAATCCACCTCTTTCCAAATCTTTTCTTTTGAAGCTGAACTTCTATTAGTTATGTTGATGAAATAGCAAACACTGGTTCATTTTGTAGGTTTGTTGGAATTAACTACAACATTTAGTCTATTGTTCTCATGCCATGGATCTTATCACCATGTATATTAAAGGAACAATCATTTGTCTAATGGTTTTTCTAGTTTGGTGGATTTACGTGCAGTTTGATTACTGTTTTTTGGTCAATATACATGTCTGGCACCATTTGATTACTTTTTACCACGCATACCTTTAGACTTAACTGGATTAGCCTTTTGATTTGCTTATTTTACTCTGAAACAGTACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTC</genome_strand>
        <mrna_strand>CCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAG.............................................................................CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAG.....................................................................................GAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578758" ref_strand="+" ref_description="SGN-E578758 [85879]">
      <seq>atttattcattgtttcatggaacttgtcgctagaggtcatatcaagaagcacgagcccttttcaatagtaaccgtgaaagaacatgagatgacgcattggcgtgatcttcagaagttaaaaaggcgtcctctcaccatcccatctaaaggaaattggaattggctcattctattacggctgagccaaagtgaaccattaagatgtgtcagtactcctatgatcttttgctgcaatacttgcacaagacagaatctattacaatgctggggatcatcaatgagcgcattaattttcaagtttctcctggacagccctggctctatatctgatgatgcggaagttgtaactcttgttgcaaagtggccatgatgctagtctcataaatcagaaagaagttcattgggggctgcttgaagattctttagaagaacggttagaaaagacaggaggttcggttccagactcagaaaagtttgacggagatcctaaggaaggagaagtggaagaaaacaagaagaagtcagttgaaggtggtaaacaaggtgcacctcttaaaaaactaaagaaggacaaagttggggttgcaacagggaaaccttctcgtacagagagtagcacggtgacaactgcaccacgtgtcaaaccggaacttgctttacctgctatacctgtagaggtagaactttctattctgggaggacttgaggaaccgtgtacagttgagtaatgcatcattgccctcagttagcttctatacatttgttcaatacacactaatggactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44084" stop="50769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44384" g_stop="44433" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44511" g_stop="44608" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="149" r_length="100" r_score="0.878"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.985" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44694" g_stop="44750" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="210" r_length="61" r_score="0.825"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44751" i_stop="45324" i_length="574">
            <donor d_prob="0.985" d_score="0.83"/>
            <acceptor a_prob="0.648" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45325" g_stop="45412" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="298" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45413" i_stop="47119" i_length="1707">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47120" g_stop="47226" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="407" r_length="109" r_score="0.935"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47227" i_stop="49257" i_length="2031">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49258" g_stop="49365" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="515" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49366" i_stop="49544" i_length="179">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49545" g_stop="49696" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="667" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49697" i_stop="50358" i_length="662">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50359" g_stop="50469" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="781" r_length="114" r_score="0.919"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50470" i_stop="50561" i_length="92">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.527" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50562" g_stop="50567" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="787" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E578758" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44384" e_stop="44433"/>
          <exon e_start="44511" e_stop="44608"/>
          <exon e_start="44694" e_stop="44750"/>
          <exon e_start="45325" e_stop="45412"/>
          <exon e_start="47120" e_stop="47226"/>
          <exon e_start="49258" e_stop="49365"/>
          <exon e_start="49545" e_stop="49696"/>
          <exon e_start="50359" e_stop="50469"/>
          <exon e_start="50562" e_stop="50567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAGGTATACTTTGTCAGTTATGTTTTGGTTGTATTTTGATATTTGTGAGAGAATTTTTAACACAATTCTTTTATTTCCAGCACGAGCCTTTTTCAATAGTTACCGTG-AAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTT-AGAAGGCGTCCTCTCACCTTCCCATCTAGAGGTACATCAATATCCTAGCAACTGTGTGGATGACCTTTTCCATGCTTAAGTGTGTCATAGATCACTAAACTTATTCCGAAATGCAGGAAA-TGGAATTTGCTCATTCTA-TACGGGTGAG-CAAAGTGAA-CATTAAGATGTGTCAGGTATTCTCTTGATCCTTTTGCTTCCTCTGGTTGAATTTTTCTGCTACTATAGTGCACACTAATGTCTCAACTGTGAAAGCCAAGTGTGTCGGGGTTTGTTAGCAATTGGTGACAAATGCATATCGAGTTAGTAGTTACAAAGGAGGAAAAGAAACTAATGTGATATTTCACTTTAGAGTGCATTATCTTTCATTTCCTTCTCTTGACCACTTATTTTGCTGTGGAACTTCAACTTTTTGACAAAAAATCCACCTCTTTCCAAATCTTTTCTTTTGAAGCTGAACTTCTATTAGTTATGTTGATGAAATAGCAAACACTGGTTCATTTTGTAGGTTTGTTGGAATTAACTACAACATTTAGTCTATTGTTCTCATGCCATGGATCTTATCACCATGTATATTAAAGGAACAATCATTTGTCTAATGGTTTTTCTAGTTTGGTGGATTTACGTGCAGTTTGATTACTGTTTTTTGGTCAATATACATGTCTGGCACCATTTGATTACTTTTTACCACGCATACCTTTAGACTTAACTGGATTAGCCTTTTGATTTGCTTATTTTACTCTGAAACAGTACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTCAAGGTGCACTTCCCATTTTCGCAGTTGCTTTCAACCTTTCAATTTGCAACTATGTTAAATTGACCATTTTAATTTAGCGTAATCTTTTTTGATTAAGTAAAGTATTTCATTAAGAAAACAAGGCCGAGATGACTGTAAACAAGAGATATACCCTAAAAGAAGAAACCTACAAAAATATGGTTCACTCTAAAATACACCCAATCCTCTATACTAATAGGAACGACATGGTGCACCAAAAGAAAATAGGGAGTGGAGACTGCTACTTAGTTGAGCAAGGCTCATCTCCATTCCTTCAAAAGCCCCCATATTTCTCTCTCCAAATGACCCACGTTAAAGCAAGAGAAGTAACATTCCAAGCCTTTTGCCTTCTTCTCCTGGCACCAGTTGTCGAACTAAACATCAACTCTTTCACGGATCTTGGCATCAGCCCTGAAATGCCGAACCATCTAAAGATACCCTACCATAACCTCATTGCTAGATTGCAATGTAGCATAATATGATCCACGATCTCACCTGCCTCCTTACTAAGGAAACACCAACTAATACAGACAACTTTCCATTTCCTAACATTCTCCGCCGTCAAAATCACCCCTCTATAAACTAACCAAGTGAAGAAGCACCCCTTCCTTGGAATCCTAGGAATATCGTAAATATTTATTCCACCATGAAGTGTTTAGGAAGAAGCAGTTACATCTTTCCATTTATATTGGTATGATAGTGAAACCATATGAGAAGGAAGAAGAGAAATGTCTTTTCCTTGACCATTGTCCTTTAGAACAAATGCTCATCATTACATCCACTGAATAAAGACGGGGAAAGGAAAAGCGTTCCAATTTAAATTCAACTTCTTTCTGTCAGATCATTGTTTATTTTGTCCCTCCATGATCACTTAACCATCTCAATCCTCTGGAACCAAATTACATGACTAGAGGGGAACTGTCATGTTTATTATAAATAGTGGTGAATTTTACCATAATTACTTCCTTTATATTGCTTGGTTCTTCCATAGGTGTGCTCTCTAGCTTTTGTTTCTTGGTTCAAGGCTTGTTACTAACTCGAACAAACTCCAATACATTTTCCTTGGTAGCTAAAATTTATCAAGTTACAGGGAGAAAAAGAAATGAGAAAAGAAGTCTTTGATAAGATATTGCAGAGGTGGCTGTTTTTGTTGCTTAATTGTCATGTTATCGTGGGAGAACATGGTCACATAGGAGGTGTAACAAGTGGTGGTTTAACTAGCTATAGTGACTATGTGCCTTCACTGCTGCCTCTATTGGGTTCTGACCAAGGGAGGTTGCTAAAATTAAGGTCAAAGATTTATTGGAATGAAGAACAGTAATAAGAGTGAGTTATAGATGCAGAGGGTATTCCAGATCTATTTATAGGCCTTGAATTCTTTTCCTCTTTATCTCTTTCATTCGGATTCCACTTTTGCTTGTGCCAAGAAATGCCAAAGTCACTAGATGCACATGATTTACTCAATTAAGTTCATGGTATGTTTGGTGCAAGGCCGAAGACATGTTCTTCCCAGGTAGTCTGGCAATGTTCTAGCAAAAAATTGTCCTAAATGCAACCCTATGAATAGTTTAGTGGCCCATGATCCCCCTGTGCCTTGCCTATTACTCATTATATAATCATATGGTATAATTTTAGAGCTATGTATTTATTAAATTTAAGTACAACATGAAGCTAATTTGTATCAAATGACAGTTTCTCCTGGACAG-CCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTGC-AAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGGGTAAGCAAACAGTCAATACCAATAATTTAATCTTTATGTTTTTGGATTGGATTGTGTAGTAAATATCAGCTTTTGACCACTTTACCTGTCAATTTCTTGAGCTATTTGATGAATATTCTTGTTTGTTGGTTAACTGACCATGAAACAATTAAATTGGCCAGCTGGAAGTCTTCCCATGCCAACGTATGGAAGAATGGATACCCCCCCCCCCCCCCCAAAAAAAAAAACAAGAAACAATATAACCAATTCCTTTAACAGAACGTAGTGCAGTGCATTGAGTTCTTGAGAGGTAGGGTAATTAGTGGGAAAATAACAATTCTTTGGATTGCATTACCTTTGAAGTATGTGTTTCAGAGTATTGAGGATAAAATCACATTATGATCTAAAATTGTTCTATCAAGATCGGTTTTAGGAAAAAGAAAAGGTGGCCCTATACAACATTACCAGTTCCCAAAAAAGAAGAAGGGAAAAGGGCCCTGCAGTTCATCAAAGTAATTGGAGACCATCTGGGTTGGGTCTGGGACTAGTTCACCACTATAAAACATTTCTCTTATTCTATGTTTTATAGCTATGGCTTATGGGTATGGCAAAGCGGTCAATAAAGTGGGTAAACTTATGGGAGATCAGGGTTCAAGTTCCTGTAGAAACAAAGGCGCTAGGTGATTTTTTCTCGTCTACCTAAGCTTTGGTGGGCAGATACTGTGTATATACTGGTGGAAGGTAGTAGATACAGATTCATGCAAGTTTACTGAACAACCCATATTAAATTGGAAAAAAAAATAAAACGAAGAGAATGTGGAGCTGCAAGTTATAGACAAGTGATAAGCTTACTCCTTCGTGTATAAACTAATATTATCTAAGGAGAGTTTATCACTATCAATCCTTTGGGGTGGCCCAGTGGTTTGAGTTTGTGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGAGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGTTTGTCTAGTGCGTGTTACCTCTCATATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGTGGGTTTCCCTTGTCATAAAAAAAGAAGAAGAAGTATATCACTATCAACTAGTTTTAGCCATTCTAGGTTCCATGTTTTGTAAGGATTGCTTGGGTTATGCTCTTGATCACACTTCCTCAATGTGGGTGGAATACATGTTGGATTTGATTAAAATAAGATGGGTAATTAAATGGGTGCAAACCTAGGAGACAAGTCAAAAATACTAGGTGATTTCTTCTCATCTGCCCAAGCTTGGTAGTTGATTTATCCTGTAACTGTGTTGGTGGGAGAAAGCAAGTACCTAACGGAATACTCAAGGTGCACACAAGTTGTCATAAAACACCACCATTTTCAAGTTAAAAAAAATGTATTATTTGACTTTCATATGGCGAATGAAGAGGTCAGAGAGACTAGAGTCAAAAGATAAAGAATGTCGTGATGGAGTTGTCCTTTCTTTCGCCTTAATCTTCATCCTCTTTCTTTTCTTGTAACTGAGGGTGAGGTGATGCATGGGTTTTCGAAAATTCTTTCGTTCATTATTTCATCTTCACTTTAGGGAGTGGGCTGAATATAAAATGGGCTGAATATATAATACTACAAAAATATTGTATTAGGCCTGATGAAATATAGTGGTAATATAACTTACCTTTCGCGGTGGAACAGGCCAATCTTACATTCCATGTGTGTGTGTATTGGAGCGGACCAATCCATATTACAAAGCATATTAATGAATAAAAAACTGAGGTGAAATGATTATTTCCATTTTTATTTAGAATCCCCTTAGCTGTGTTTGATATTCTATTTGTACCCACATATCCTAGACAGAATTTAATGAGTCTGAGTGTCTGACACTTCCGACACGGATCATACCCCCCGATTTTAGAAGAGTCTGTGTAATGTAGATCTTCCGTGTTTTAAAATTTATCCCCAGGAGATGTGTTAATAATTTATTTTGCAGATGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACTGGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAACAAGGTATTGAATTTCTATCAGTTCATTTCCCACTTGATCATATTCATAAATATTTCGCACTTAATTATCTCATCTTTCCTTAGTGGTGTAAATTTTTTTTGGTGGACATCCTTCCACATTTACTTTTGTCGAAAAAGTGACATCCTTCCACATTTATTGTTTTTATTTTGCCCTTTTTTCAGAAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTACTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTCCCACGACATCATCCCTGTACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGATCCATTAGAAAACATCAAGTGAAACGGCTATACAAAGAAGTTGCATAAAAAAGGAAAATTATGAAGGATGAGGAAAATATGATTGAGCTCAATCCTTTCTGTGGTGTCATACTCATAGTACTCCCTCCATTTCAATTTATTTGACCTTTTTTCCTCTCTAGTCCATTGAAAAAAGAATGACCCTTTCCTTTTTATAGCAACTTCTAAATTTTACTTCCCAAGTTGTATGTTTAAGACTACAAGAATAAAGGGCATTTCGGTACATTTGACAGATCTTTGATTTTAAACCACAAGATTTAAAGATCTTTATTTTATTAAACTCTGTGCCAAGTCAAAACAAGAATTTGAAATGGAGGGAGTGTATTTTTTTAGATAATTAAATATCTTTAATAAAGTCATACTCGGTATATCTTCTTACATTCATCCATATATTGCATTATGTTTCTTATCTCTCTGTGTGTGTGGGGGGGGGGGGGTTGGATCTTGGATCATCTTAACTGAAAGAAAATTTGTCACAGACCTGTAGAGGTAGAACTTTCTATTCT-GGAAGACTTGAGGAACCGCGTACAGTTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATTTGTT-AATACACAC-AATGGGTAAGTTTTCATGATCTTGAATCTTTTAAGTGTGGAATTCGTATTCAGGAACATATCCTAATCTCAGTGAGTTAATCTGTAAATGTCTGTAGACTAAA</genome_strand>
        <mrna_strand>ATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTCATA-TCAAGAAG.............................................................................CACGAGCCCTTTTCAATAGTAACCGTGAAAGAACATGAGATGACGCATTGGCGTGATCTTCAGAAGTTAAAAAGGCGTCCTCTCACCATCCCATCTAAAG.....................................................................................GAAATTGGAATTGGCTCATTCTATTACGGCTGAGCCAAAGTGAACCATTAAGATGTGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCTATGATCTTTTGCTGCAATACTTGCACAAGACAGAATCTATTACAATGCTGGGGATCATCAATGAGCGCATTAATTTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCCTGGACAGCCCTGGCTCTATATCTGATGATGCGGAAGTTGTAACTCTTGTTGCAAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCATTGGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACAGGAGGTTCGGTTCCAGACTCAGAAAAGTTTGACGGAGATCCTAAGGAAGGAGAAGTGGAAGAAAACAAG...................................................................................................................................................................................AAGAAGTCAGTTGAAGGTGGTAAACAAGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGGTTGCAACAGGGAAACCTTCTCGTACAGAGAGTAGCACGGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGTAGAGGTAGAACTTTCTATTCTGGGAGGACTTGAGGAACCGTGTACAGTTGAGTAATGCATCATTGCCCTCAGTTAGCTTCTATACATTTGTTCAATACACACTAATGG............................................................................................ACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542617" ref_strand="+" ref_description="SGN-E542617 [TUS-64-A5](-)">
      <seq>atttgctcattctatacgggtgagcaaagtgaacattaagatgtgtcagtactcctatgaccttctgttgcaatacttgcacaagacagaatctcttacaatgcttgggatcatcaatgagcgcattattttcaagtttctgctggacagcctggctctatatctggtgatacggaagttgtaactcttgttacaagtggccatgatgctagtctcataaatcagaaagaagttctttgggggatgcttgaagattctttagaagaccggttagaaaagacaagaggttctgttccagattcggaaaagtttgatggagatccgaaggaaggagaagcggaagaaaacaagaagaagtcaattgaaggtggtaaacatgctgcacctcttaaaaaactaaagaaggacaaagttgggattgcaacagggaaatcttctcgtacagagagcagcacagtgacaactgcaccacgtgtcaaaccggaacttgctttacctgctatgtactcctcaaacctattatcttacttaccaaaagaaaaagagagggccctattgtgtttttctctcaccacgacatcactccctgtacttggaaaagtcattcttgttggatgtcataattttatttgaaatacagtcatcatgatccattagaaaacatctaagtgaaacggtctatacaaagaagttgcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44402" stop="50197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44702" g_stop="44750" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44751" i_stop="45324" i_length="574">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45325" g_stop="45412" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="136" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45413" i_stop="47119" i_length="1707">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47120" g_stop="47226" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="243" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47227" i_stop="49257" i_length="2031">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49258" g_stop="49365" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="351" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49366" i_stop="49544" i_length="179">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49545" g_stop="49897" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="708" r_length="357" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E542617" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44702" e_stop="44750"/>
          <exon e_start="45325" e_stop="45412"/>
          <exon e_start="47120" e_stop="47226"/>
          <exon e_start="49258" e_stop="49365"/>
          <exon e_start="49545" e_stop="49897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAGGTATTCTCTTGATCCTTTTGCTTCCTCTGGTTGAATTTTTCTGCTACTATAGTGCACACTAATGTCTCAACTGTGAAAGCCAAGTGTGTCGGGGTTTGTTAGCAATTGGTGACAAATGCATATCGAGTTAGTAGTTACAAAGGAGGAAAAGAAACTAATGTGATATTTCACTTTAGAGTGCATTATCTTTCATTTCCTTCTCTTGACCACTTATTTTGCTGTGGAACTTCAACTTTTTGACAAAAAATCCACCTCTTTCCAAATCTTTTCTTTTGAAGCTGAACTTCTATTAGTTATGTTGATGAAATAGCAAACACTGGTTCATTTTGTAGGTTTGTTGGAATTAACTACAACATTTAGTCTATTGTTCTCATGCCATGGATCTTATCACCATGTATATTAAAGGAACAATCATTTGTCTAATGGTTTTTCTAGTTTGGTGGATTTACGTGCAGTTTGATTACTGTTTTTTGGTCAATATACATGTCTGGCACCATTTGATTACTTTTTACCACGCATACCTTTAGACTTAACTGGATTAGCCTTTTGATTTGCTTATTTTACTCTGAAACAGTACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTCAAGGTGCACTTCCCATTTTCGCAGTTGCTTTCAACCTTTCAATTTGCAACTATGTTAAATTGACCATTTTAATTTAGCGTAATCTTTTTTGATTAAGTAAAGTATTTCATTAAGAAAACAAGGCCGAGATGACTGTAAACAAGAGATATACCCTAAAAGAAGAAACCTACAAAAATATGGTTCACTCTAAAATACACCCAATCCTCTATACTAATAGGAACGACATGGTGCACCAAAAGAAAATAGGGAGTGGAGACTGCTACTTAGTTGAGCAAGGCTCATCTCCATTCCTTCAAAAGCCCCCATATTTCTCTCTCCAAATGACCCACGTTAAAGCAAGAGAAGTAACATTCCAAGCCTTTTGCCTTCTTCTCCTGGCACCAGTTGTCGAACTAAACATCAACTCTTTCACGGATCTTGGCATCAGCCCTGAAATGCCGAACCATCTAAAGATACCCTACCATAACCTCATTGCTAGATTGCAATGTAGCATAATATGATCCACGATCTCACCTGCCTCCTTACTAAGGAAACACCAACTAATACAGACAACTTTCCATTTCCTAACATTCTCCGCCGTCAAAATCACCCCTCTATAAACTAACCAAGTGAAGAAGCACCCCTTCCTTGGAATCCTAGGAATATCGTAAATATTTATTCCACCATGAAGTGTTTAGGAAGAAGCAGTTACATCTTTCCATTTATATTGGTATGATAGTGAAACCATATGAGAAGGAAGAAGAGAAATGTCTTTTCCTTGACCATTGTCCTTTAGAACAAATGCTCATCATTACATCCACTGAATAAAGACGGGGAAAGGAAAAGCGTTCCAATTTAAATTCAACTTCTTTCTGTCAGATCATTGTTTATTTTGTCCCTCCATGATCACTTAACCATCTCAATCCTCTGGAACCAAATTACATGACTAGAGGGGAACTGTCATGTTTATTATAAATAGTGGTGAATTTTACCATAATTACTTCCTTTATATTGCTTGGTTCTTCCATAGGTGTGCTCTCTAGCTTTTGTTTCTTGGTTCAAGGCTTGTTACTAACTCGAACAAACTCCAATACATTTTCCTTGGTAGCTAAAATTTATCAAGTTACAGGGAGAAAAAGAAATGAGAAAAGAAGTCTTTGATAAGATATTGCAGAGGTGGCTGTTTTTGTTGCTTAATTGTCATGTTATCGTGGGAGAACATGGTCACATAGGAGGTGTAACAAGTGGTGGTTTAACTAGCTATAGTGACTATGTGCCTTCACTGCTGCCTCTATTGGGTTCTGACCAAGGGAGGTTGCTAAAATTAAGGTCAAAGATTTATTGGAATGAAGAACAGTAATAAGAGTGAGTTATAGATGCAGAGGGTATTCCAGATCTATTTATAGGCCTTGAATTCTTTTCCTCTTTATCTCTTTCATTCGGATTCCACTTTTGCTTGTGCCAAGAAATGCCAAAGTCACTAGATGCACATGATTTACTCAATTAAGTTCATGGTATGTTTGGTGCAAGGCCGAAGACATGTTCTTCCCAGGTAGTCTGGCAATGTTCTAGCAAAAAATTGTCCTAAATGCAACCCTATGAATAGTTTAGTGGCCCATGATCCCCCTGTGCCTTGCCTATTACTCATTATATAATCATATGGTATAATTTTAGAGCTATGTATTTATTAAATTTAAGTACAACATGAAGCTAATTTGTATCAAATGACAGTTTCTCCTGGACAGCCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTGCAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGGGTAAGCAAACAGTCAATACCAATAATTTAATCTTTATGTTTTTGGATTGGATTGTGTAGTAAATATCAGCTTTTGACCACTTTACCTGTCAATTTCTTGAGCTATTTGATGAATATTCTTGTTTGTTGGTTAACTGACCATGAAACAATTAAATTGGCCAGCTGGAAGTCTTCCCATGCCAACGTATGGAAGAATGGATACCCCCCCCCCCCCCCCAAAAAAAAAAACAAGAAACAATATAACCAATTCCTTTAACAGAACGTAGTGCAGTGCATTGAGTTCTTGAGAGGTAGGGTAATTAGTGGGAAAATAACAATTCTTTGGATTGCATTACCTTTGAAGTATGTGTTTCAGAGTATTGAGGATAAAATCACATTATGATCTAAAATTGTTCTATCAAGATCGGTTTTAGGAAAAAGAAAAGGTGGCCCTATACAACATTACCAGTTCCCAAAAAAGAAGAAGGGAAAAGGGCCCTGCAGTTCATCAAAGTAATTGGAGACCATCTGGGTTGGGTCTGGGACTAGTTCACCACTATAAAACATTTCTCTTATTCTATGTTTTATAGCTATGGCTTATGGGTATGGCAAAGCGGTCAATAAAGTGGGTAAACTTATGGGAGATCAGGGTTCAAGTTCCTGTAGAAACAAAGGCGCTAGGTGATTTTTTCTCGTCTACCTAAGCTTTGGTGGGCAGATACTGTGTATATACTGGTGGAAGGTAGTAGATACAGATTCATGCAAGTTTACTGAACAACCCATATTAAATTGGAAAAAAAAATAAAACGAAGAGAATGTGGAGCTGCAAGTTATAGACAAGTGATAAGCTTACTCCTTCGTGTATAAACTAATATTATCTAAGGAGAGTTTATCACTATCAATCCTTTGGGGTGGCCCAGTGGTTTGAGTTTGTGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGAGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGTTTGTCTAGTGCGTGTTACCTCTCATATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGTGGGTTTCCCTTGTCATAAAAAAAGAAGAAGAAGTATATCACTATCAACTAGTTTTAGCCATTCTAGGTTCCATGTTTTGTAAGGATTGCTTGGGTTATGCTCTTGATCACACTTCCTCAATGTGGGTGGAATACATGTTGGATTTGATTAAAATAAGATGGGTAATTAAATGGGTGCAAACCTAGGAGACAAGTCAAAAATACTAGGTGATTTCTTCTCATCTGCCCAAGCTTGGTAGTTGATTTATCCTGTAACTGTGTTGGTGGGAGAAAGCAAGTACCTAACGGAATACTCAAGGTGCACACAAGTTGTCATAAAACACCACCATTTTCAAGTTAAAAAAAATGTATTATTTGACTTTCATATGGCGAATGAAGAGGTCAGAGAGACTAGAGTCAAAAGATAAAGAATGTCGTGATGGAGTTGTCCTTTCTTTCGCCTTAATCTTCATCCTCTTTCTTTTCTTGTAACTGAGGGTGAGGTGATGCATGGGTTTTCGAAAATTCTTTCGTTCATTATTTCATCTTCACTTTAGGGAGTGGGCTGAATATAAAATGGGCTGAATATATAATACTACAAAAATATTGTATTAGGCCTGATGAAATATAGTGGTAATATAACTTACCTTTCGCGGTGGAACAGGCCAATCTTACATTCCATGTGTGTGTGTATTGGAGCGGACCAATCCATATTACAAAGCATATTAATGAATAAAAAACTGAGGTGAAATGATTATTTCCATTTTTATTTAGAATCCCCTTAGCTGTGTTTGATATTCTATTTGTACCCACATATCCTAGACAGAATTTAATGAGTCTGAGTGTCTGACACTTCCGACACGGATCATACCCCCCGATTTTAGAAGAGTCTGTGTAATGTAGATCTTCCGTGTTTTAAAATTTATCCCCAGGAGATGTGTTAATAATTTATTTTGCAGATGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACTGGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAACAAGGTATTGAATTTCTATCAGTTCATTTCCCACTTGATCATATTCATAAATATTTCGCACTTAATTATCTCATCTTTCCTTAGTGGTGTAAATTTTTTTTGGTGGACATCCTTCCACATTTACTTTTGTCGAAAAAGTGACATCCTTCCACATTTATTGTTTTTATTTTGCCCTTTTTTCAGAAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTACTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTC-CCACGACATCA-TCCCTGTACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGATCCATTAGAAAACATC-AAGTGAAACGG-CTATACAAAGAAGTTGCATAAAAAAGGAAA</genome_strand>
        <mrna_strand>ATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTCTTACAATGCTTGGGATCATCAATGAGCGCATT-ATTTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGCTGGACAGCCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTACAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGAAGATTCTTTAGAAGACCGGTTAGAAAAGACAAGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGCGGAAGAAAACAAG...................................................................................................................................................................................AAGAAGTCAATTGAAGGTGGTAAACATGCTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTACTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTCACCACGACATCACTCCCTGTACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGATCCATTAGAAAACATCTAAGTGAAACGGTCTATACAAAGAAGTTGCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542657" ref_strand="+" ref_description="SGN-E542657 [TUS-64-B4](-)">
      <seq>atgatgctagtctcataaatcagaaagaagttctttgggggatgcttgaagattctttagaagaccggttagaaaagacaggaggttctgttccagattcggaaaagtttgatggagatccgaaggaaggagaagtggaagaaaacaagaagaagtcaattgaaggtggtaaacatggtgcacctcttaaaaaactaaagaaggacaaagttgggattgcaacagggaaatcttctcgtacagagagcagcacagtgacaactgcaccacgtgtcaaaccggaacttgctttacctgctatgtactcctcaaacctattatcttacttaccaaaagaaaaagagagggccctattgtgtttttctctcccacgacatcatccctgtacttggaaaagtcattcttgttggatgtcataattttatttgaaatacagtcatcatgatccattagaaaacatcaagtgaaacggctatacaaagaagttgcataaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46886" stop="80215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47186" g_stop="47226" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47227" i_stop="49257" i_length="2031">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49258" g_stop="49365" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="149" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49366" i_stop="49544" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49545" g_stop="49926" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="531" r_length="382" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E542657" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47186" e_stop="47226"/>
          <exon e_start="49258" e_stop="49365"/>
          <exon e_start="49545" e_stop="49926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGGGTAAGCAAACAGTCAATACCAATAATTTAATCTTTATGTTTTTGGATTGGATTGTGTAGTAAATATCAGCTTTTGACCACTTTACCTGTCAATTTCTTGAGCTATTTGATGAATATTCTTGTTTGTTGGTTAACTGACCATGAAACAATTAAATTGGCCAGCTGGAAGTCTTCCCATGCCAACGTATGGAAGAATGGATACCCCCCCCCCCCCCCCAAAAAAAAAAACAAGAAACAATATAACCAATTCCTTTAACAGAACGTAGTGCAGTGCATTGAGTTCTTGAGAGGTAGGGTAATTAGTGGGAAAATAACAATTCTTTGGATTGCATTACCTTTGAAGTATGTGTTTCAGAGTATTGAGGATAAAATCACATTATGATCTAAAATTGTTCTATCAAGATCGGTTTTAGGAAAAAGAAAAGGTGGCCCTATACAACATTACCAGTTCCCAAAAAAGAAGAAGGGAAAAGGGCCCTGCAGTTCATCAAAGTAATTGGAGACCATCTGGGTTGGGTCTGGGACTAGTTCACCACTATAAAACATTTCTCTTATTCTATGTTTTATAGCTATGGCTTATGGGTATGGCAAAGCGGTCAATAAAGTGGGTAAACTTATGGGAGATCAGGGTTCAAGTTCCTGTAGAAACAAAGGCGCTAGGTGATTTTTTCTCGTCTACCTAAGCTTTGGTGGGCAGATACTGTGTATATACTGGTGGAAGGTAGTAGATACAGATTCATGCAAGTTTACTGAACAACCCATATTAAATTGGAAAAAAAAATAAAACGAAGAGAATGTGGAGCTGCAAGTTATAGACAAGTGATAAGCTTACTCCTTCGTGTATAAACTAATATTATCTAAGGAGAGTTTATCACTATCAATCCTTTGGGGTGGCCCAGTGGTTTGAGTTTGTGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGAGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGTTTGTCTAGTGCGTGTTACCTCTCATATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGTGGGTTTCCCTTGTCATAAAAAAAGAAGAAGAAGTATATCACTATCAACTAGTTTTAGCCATTCTAGGTTCCATGTTTTGTAAGGATTGCTTGGGTTATGCTCTTGATCACACTTCCTCAATGTGGGTGGAATACATGTTGGATTTGATTAAAATAAGATGGGTAATTAAATGGGTGCAAACCTAGGAGACAAGTCAAAAATACTAGGTGATTTCTTCTCATCTGCCCAAGCTTGGTAGTTGATTTATCCTGTAACTGTGTTGGTGGGAGAAAGCAAGTACCTAACGGAATACTCAAGGTGCACACAAGTTGTCATAAAACACCACCATTTTCAAGTTAAAAAAAATGTATTATTTGACTTTCATATGGCGAATGAAGAGGTCAGAGAGACTAGAGTCAAAAGATAAAGAATGTCGTGATGGAGTTGTCCTTTCTTTCGCCTTAATCTTCATCCTCTTTCTTTTCTTGTAACTGAGGGTGAGGTGATGCATGGGTTTTCGAAAATTCTTTCGTTCATTATTTCATCTTCACTTTAGGGAGTGGGCTGAATATAAAATGGGCTGAATATATAATACTACAAAAATATTGTATTAGGCCTGATGAAATATAGTGGTAATATAACTTACCTTTCGCGGTGGAACAGGCCAATCTTACATTCCATGTGTGTGTGTATTGGAGCGGACCAATCCATATTACAAAGCATATTAATGAATAAAAAACTGAGGTGAAATGATTATTTCCATTTTTATTTAGAATCCCCTTAGCTGTGTTTGATATTCTATTTGTACCCACATATCCTAGACAGAATTTAATGAGTCTGAGTGTCTGACACTTCCGACACGGATCATACCCCCCGATTTTAGAAGAGTCTGTGTAATGTAGATCTTCCGTGTTTTAAAATTTATCCCCAGGAGATGTGTTAATAATTTATTTTGCAGATGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACTGGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAACAAGGTATTGAATTTCTATCAGTTCATTTCCCACTTGATCATATTCATAAATATTTCGCACTTAATTATCTCATCTTTCCTTAGTGGTGTAAATTTTTTTTGGTGGACATCCTTCCACATTTACTTTTGTCGAAAAAGTGACATCCTTCCACATTTATTGTTTTTATTTTGCCCTTTTTTCAGAAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTACTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTCCCACGACATCATCCCTGTACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGATCCATTAGAAAACATCAAGTGAAACGGCTATACAAAGAAGTTGCATAAAAAAGGAAAATTATGAAGGATGAGGAAAATATGATTGA</genome_strand>
        <mrna_strand>ATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGAAGATTCTTTAGAAGACCGGTTAGAAAAGACAGGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAACAAG...................................................................................................................................................................................AAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTACTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTCCCACGACATCATCCCTGTACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGATCCATTAGAAAACATCAAGTGAAACGGCTATACAAAGAAGTTGCATAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262068" ref_strand="+" ref_description="SGN-E262068 [cLEG-58-A23]">
      <seq>ttgagtaatgcatcattgccctctgttagcttctatacatttgttaatacacacaatggactaaactgtgcatcaatatcacatgatggatcactagtggctggtggattctcagattcatctgtgaaggtctgggacatggcaaagcttggggaacaaactggtccatcttttttgcagggggagactgattcaccttcaagtgagcatgtgcttggcgcaaatggtggaagaagatgttatacattacttcagggccattcagggcctgtttattctgcatcattcagtcctcacggggattttcttctttcttcatcatcagattcaactgttcgcttatggagcacaaagttaaatgctaatgttgtttgctacaaaggccacaattacccagtatgggatgttcagtttagcccagctggacattattttgccagttcttcacatgaccgcactgcaaggatctggtctgtggacaggatacagcctctaagaataatggccggacacttgtcagatgtagattgtgtgcgatggcacgcaaattgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccagagtggtgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttgaccggtcattccctctgtgtgtggtcacttgctttttagtggtgaaggtcacttcttgcatcgggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50111" stop="56020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50411" g_stop="50469" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50470" i_stop="50561" i_length="92">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50562" g_stop="50631" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="129" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50632" i_stop="50768" i_length="137">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50769" g_stop="50808" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="169" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50809" i_stop="53551" i_length="2743">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53552" g_stop="53716" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="334" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53717" i_stop="53849" i_length="133">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53850" g_stop="53926" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="411" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53927" i_stop="54144" i_length="218">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54145" g_stop="54261" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="528" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55313" g_stop="55578" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="795" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55691" g_stop="55720" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="824" r_length="29" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E262068" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50411" e_stop="50469"/>
          <exon e_start="50562" e_stop="50631"/>
          <exon e_start="50769" e_stop="50808"/>
          <exon e_start="53552" e_stop="53716"/>
          <exon e_start="53850" e_stop="53926"/>
          <exon e_start="54145" e_stop="54261"/>
          <exon e_start="55313" e_stop="55578"/>
          <exon e_start="55691" e_stop="55720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATTTGTTAATACACACAATGGGTAAGTTTTCATGATCTTGAATCTTTTAAGTGTGGAATTCGTATTCAGGAACATATCCTAATCTCAGTGAGTTAATCTGTAAATGTCTGTAGACTAAACTGTGCATCAATATCACATGATGGATCACTAGTGGCTGGTGGATTCTCAGATTCATCTGTGAAGGTGCTTGTAGCTTCTGAATGACGTTGAAATTATGTTGTCACAAATTACAGTATCTGTTGATCCTTGATCATCTTCTTATCTTTTTTTTGGAACTGGTAACTTTGATCATCTTCTAATCTAAGTCCCCCATTTTACAGGTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCATGTAAGTCCAATATGATGGTCCTCAGCTCCTTTTCAATGTATTGTTATTTCATGTTTCAAGATGTTTTAGTGAATAGAGGTTGAAAAGGTCCCTTTTAATACTACTCCTAGTCACAGTATATCTCGCCAGGACAGCAAGAAAGATTTATTCTTTGCTGCTTTAATTTATTTGATAAGTAGATAAATTTTATTTCACTAAGAAACTGCACTAGGGTTGTGAAGTTTGTTACATCAGAAATTTGCTTAGCAGAAACATGATTAGTTATGAAGGTTTCTCGACTGAACATATAAATGCAGCTTTACATTTCTGATGGAAGTATTTCTTGAACTCCTTGCATTTTTCAATTAGGTAAATAATTTTAATCGAAAAGTCTCCTGTATACAATGCAGTACACAAAAAATAACTATATCAGAATATGATTCTAACAAACAATATCCTATTGTTTTTTTTTTGGAGAAAGTATCAGAATATGATTCTAACAAACAATATCCTACTGTTTTTTGTTTTTTTTGAGAAAGTAACATTTGTATTAAAGAAACTTGGTAAAAAGGTTGTGCTGGTAACCATGTGCAGCTTCCAAAAGTATTGGGAATCCTTTTACTTCTCACTAGGGATCTATCATGTCATATTGGATTCTACATCATTTACATAATCTCTTTGCACCAAAAACATAAACAACACAAAACAATTCATCTCTATCATTTGAATGAGGCTATTGCTGCCTTCAAAACATCTAGGGTTCCTTTCCTTCAAAGCTGTCAACCAAATGCTGGAGTGAGATCTCCCTGATTGTGCCAACATCTCAGTAAATCAGCTGTAGTTCTTGGCACTGTCCATCCGAGTCCAACTATGCTTGGGAAGAGTTGCTACAATTGAGCAGTTACACCAAGATGTAAGAACAGGTGTCTGTTAGACTCTTTAAGTCTGCACAGTATTACTAACATCTGGTGCTCAACTGGAATCCTCTCTTCTTTAAATTTATCGAGTTAGACTGGCCTATAAGAACTTCACTAATGCACCAAAAAGAATCAAGGGATTGAAAAGCTATTCCTTGAGTCTACATACTCGTTTTCTATCTCTTAAAAAGTCTTGAACCACTCCTATAATGTTGAAGTGATCAATAATTGAGAATTTTGTCACATGTCTTGTTATGACGCTCATCATGTATGCTAGTGGTTTAGATACTCCTAAGGAAAAGGCAAACATTTTGAATCCAAATGTTAACATGAGGTTTTTTTTTGAGGATAGTAACACTAATCTAAATATTCACAGCTAGACTACATCCAAAATATGTAGTCCCCTTCAAAAGGTATTGCAGTCTAGTAATATTGCCGTCTATCACCTATATTTCTTACAAATAATCCAAGACATCCCAGATATCTTGCGCTTGGACTAAAAAGTTCTCTTTTCACCAAAAATAAAATAAAGCTAGAGAATTCATCTTGAAGCTCTGAAGTCCATTCTGCTTGTCTTCAAAGCACCTCTGGTTAGAGTTTTCTCAAAAGGCCTGCATATCCACTATGGTTCAGGGCCGATCATAATCCCTATGATGTGATAATTCCGTTGAATAAGGTGGAATGTAAGTAAAAGAAATTCATTTATAAATACCAATTAAGTGCCAAACAATGCGTAGATGTCCATGTTACTTGGAAAAGTTTCCATATGATGCTATATTTCATGTTCTTTATTCATTCTTTGTTATTTCGTATTAATTATTTACTTCTTATTACAGCCTTTTATATAGTTGAGCTTGTGCTAAGTTGTTTATTCTTTTGCACCATCAGTAATATTCTGAATGTTGCATGTGATGTATCAGGTTGAGGGTAGTTTTGCTATAAAAATTGATTCCACCTTTATCTTGTCCTAAATTCTAAGTTGGATTTTCTTTTCTGATACTCTCACTACAATCCCTCAGGAAAATCTAGTTATATTGTAAAACTGGCATATTTGCCTTGAGCTGTCATATTCTAACTTGCAGAAAGGAAATAAGACAAATAGCTCATAGTTCCTTACAAATGCACGCCTTTGGAGCCAGCTGTTATGTTATTCTCTAAGGCATATCAGCAGTCAAGATTGATTCTTAAACTGATTTTTCAGCTCCATGAATTTGGTCTATTGGTAAGAGCACATCATGTAATGTTTGAGTTAGAGGCATGTCACGAGTTTGAACCCAACCACTTCAAAAAACATAGTTTTTAAGTATAGAATGTGAGAGGGGCGACTCCAATATCCACCGAGTTTTGGACTGCGTCGGCTAGCCCTCGGGGATTTCTGGGTTATCAATTTTCTTAAAAAAGCTGCTATCTCCATACTAATTGCTTATTGAGGGTTATCAATTTTCTTATAAAAGCTGCTATCTCCATACAAATTGCTTATTGAGGATGAATTTGAGCAGTTACTGAAGCAACTAATTTTGAATAATTTGTCCTTCAAAAATAAAACCCACATATCAAGAACTAAATGAAAGGTTATTGCTTCAGGGGTGTAGTTGTTCTTTAATATCTATAAAAGTATGTGAAAGCAATTTAACCAAGGATTAGTTTGTTTGACTCGCTGAAGCAAAAGAAGGCTACTACTTTGGGGCCAGGGTAGCCATAGATAGTCTGACGTCTTAGAGTATTGCTGTAAACAATCAACATCTTGCAAAACATGTCATTGTTAATGTGTGCCCCCCTGTCTCTCATACACACAAAAAATTGCCGAAACAGAAAAAAGAATGGTTGATGAACAGTGCTAGAACCAGCTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTGGTATGATATCATATGACTTTGATTGCTATTAGCTCTACAATAGTTCTTATTCATATGGATTATGATAGTTACTGAAGTTCTATATGCTTACTCTATAACCATGTGACCTTTTTGGCTAATTATTTCTATGCAGTTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAGGTAGGTTGCTAGTTTGTCATTTATTTTGTTTAATGATTCCTTTTTGGATGTAATTGTGGTAATATATTTGCAATCTCTTTAAGTAACTCACCTAATTGGTTGTTAAACAGAGAACTGCCCGAGTTAATGCATTTTTTGCTTTCTCATGGTAACTGTAGATAAAAGTTGTCACAATGGGCAAATATATGTTTGGTTTTCACTTCACATCTTGAGTGCAGTTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGATGTGAGTATCTAGTTTGTGCTCTATGCCATGGGAACTATTTATTTGATCTGATCTACGTTGGCATCTTTATCACTCTGTGGCTGTATAATCAATCTTAGTTACTTGACCTACTTTTCATTTTCGTCCTCTATAATCACTTGGCCTGTTATAAAGTGACATCTTTTCCCCATGTAAAAAAAATGAAATGGCTAAGTTTTCCGAGTGCTCAAATACCCAGACATAGGGGGCCATCTTTCCATTTTGTGAGGCCCCATAATGTTGGCCACCACTGATACTTTGGCAATTACAAGAAGTTAAGTTCATTAAGTATTCTAATTTTTGAACTTCTTGTGATGTTTTCAGGCGTACACTTAACTTTTCGACTATCAATTTAGTTCTTTTCTTAAACTACTGCTAATACATTTGATAAGTTCAAATGACATCTTAAAGTCCATTCCAGTCAAATATCTCATATAAAATGGGACAGATGGAGAGTATAATGTTTCTTTTAGCTTTGATTTGGTATCTTCTCAACAACAGTCCACACTTCATTAACTTTTACTTTTTAGTGTAACTCTTTCTTTTGCCTTTTTTATCTTTTCACCAACAATCCTCCCAAAATAGTGATGTTTTTTGAAGGATCCGATTTGATTGCGGCAATAATTTTGGAGAGACTGAGCGCATAGGGAAGAGTAACTTTTTTTATAACTTGGATTATTAATCTGGGAAGGCCTTACCTAGTTTGTACCCATGTCCCATTTGTGACTACTAATTTTGCAAGAAAAGGTTAAGTTCTATACATTATATCAGAGATACACAGACAATAGACATTAAATAAATTACTTAAAACTAATTAATGTATTTAATTAATTCCAAACAAGTTGTCATGCTTTACTAAAAAGATTGAAGGTTGAATATTTTATCTGGAGAGATTGGGCACTAATAAAATGCACTTACCATAACCATATCAGGGTAATTTTTGATTTGGCATGGAAATTTTCAGTTACTTAGATTTCTTGCAATTTCCTTTCTATTGACATAAATTTGAGAGGATGTTAAATTCATCATGTAGTGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGC-TTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTC</genome_strand>
        <mrna_strand>TTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATTTGTTAATACACACAATGG............................................................................................ACTAAACTGTGCATCAATATCACATGATGGATCACTAGTGGCTGGTGGATTCTCAGATTCATCTGTGAAG.........................................................................................................................................GTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCTCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTG.....................................................................................................................................TTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAG..........................................................................................................................................................................................................................TTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCCTCTGTGTGTGGTCACTTGCTTTTTAG................................................................................................................TGGTGAAGG-TCACTTCTTGCATCGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252040" ref_strand="+" ref_description="SGN-E252040 [cLEG-8-O16]">
      <seq>ttgagtaatgcatcattgccctctgttagcttctatacatgggttaatacacacaatggactaaactgtgcatcaatatcacatgatggatcactagtggctggtggattctcagattcatctgtgaaggtctgggacatggcaaagcttggggaacaaactggtccatcttttttgcagggggagactgattcaccttcaagtgagcatgtgcttggcgcaaatggtggaagaagatgttatacattacttcagggccattcagggcctgtttattctgcatcattcagtcctcacggggattttcttctttcttcatcatcagattcaactgttcgcttatggagcacaaagttaaatgctaatgttgtttgctacaaaggccacaattacccagtatgggatgttcagtttagcccagctggacattattttgccagttcttcacatgaccgcactgcaaggatctggtctgtggacaggatacagcctctaagaataatggccggacacttgtcagatgtaaattgtgtgcgatggcacgcaaattgcaattacattgcaaccggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50111" stop="55656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50411" g_stop="50469" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50470" i_stop="50561" i_length="92">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50562" g_stop="50631" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="129" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50632" i_stop="50768" i_length="137">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50769" g_stop="50808" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="169" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50809" i_stop="53551" i_length="2743">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53552" g_stop="53716" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="334" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53717" i_stop="53849" i_length="133">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53850" g_stop="53926" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="411" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53927" i_stop="54144" i_length="218">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54145" g_stop="54261" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="528" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55313" g_stop="55356" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="572" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E252040" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50411" e_stop="50469"/>
          <exon e_start="50562" e_stop="50631"/>
          <exon e_start="50769" e_stop="50808"/>
          <exon e_start="53552" e_stop="53716"/>
          <exon e_start="53850" e_stop="53926"/>
          <exon e_start="54145" e_stop="54261"/>
          <exon e_start="55313" e_stop="55356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATTTGTTAATACACACAATGGGTAAGTTTTCATGATCTTGAATCTTTTAAGTGTGGAATTCGTATTCAGGAACATATCCTAATCTCAGTGAGTTAATCTGTAAATGTCTGTAGACTAAACTGTGCATCAATATCACATGATGGATCACTAGTGGCTGGTGGATTCTCAGATTCATCTGTGAAGGTGCTTGTAGCTTCTGAATGACGTTGAAATTATGTTGTCACAAATTACAGTATCTGTTGATCCTTGATCATCTTCTTATCTTTTTTTTGGAACTGGTAACTTTGATCATCTTCTAATCTAAGTCCCCCATTTTACAGGTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCATGTAAGTCCAATATGATGGTCCTCAGCTCCTTTTCAATGTATTGTTATTTCATGTTTCAAGATGTTTTAGTGAATAGAGGTTGAAAAGGTCCCTTTTAATACTACTCCTAGTCACAGTATATCTCGCCAGGACAGCAAGAAAGATTTATTCTTTGCTGCTTTAATTTATTTGATAAGTAGATAAATTTTATTTCACTAAGAAACTGCACTAGGGTTGTGAAGTTTGTTACATCAGAAATTTGCTTAGCAGAAACATGATTAGTTATGAAGGTTTCTCGACTGAACATATAAATGCAGCTTTACATTTCTGATGGAAGTATTTCTTGAACTCCTTGCATTTTTCAATTAGGTAAATAATTTTAATCGAAAAGTCTCCTGTATACAATGCAGTACACAAAAAATAACTATATCAGAATATGATTCTAACAAACAATATCCTATTGTTTTTTTTTTGGAGAAAGTATCAGAATATGATTCTAACAAACAATATCCTACTGTTTTTTGTTTTTTTTGAGAAAGTAACATTTGTATTAAAGAAACTTGGTAAAAAGGTTGTGCTGGTAACCATGTGCAGCTTCCAAAAGTATTGGGAATCCTTTTACTTCTCACTAGGGATCTATCATGTCATATTGGATTCTACATCATTTACATAATCTCTTTGCACCAAAAACATAAACAACACAAAACAATTCATCTCTATCATTTGAATGAGGCTATTGCTGCCTTCAAAACATCTAGGGTTCCTTTCCTTCAAAGCTGTCAACCAAATGCTGGAGTGAGATCTCCCTGATTGTGCCAACATCTCAGTAAATCAGCTGTAGTTCTTGGCACTGTCCATCCGAGTCCAACTATGCTTGGGAAGAGTTGCTACAATTGAGCAGTTACACCAAGATGTAAGAACAGGTGTCTGTTAGACTCTTTAAGTCTGCACAGTATTACTAACATCTGGTGCTCAACTGGAATCCTCTCTTCTTTAAATTTATCGAGTTAGACTGGCCTATAAGAACTTCACTAATGCACCAAAAAGAATCAAGGGATTGAAAAGCTATTCCTTGAGTCTACATACTCGTTTTCTATCTCTTAAAAAGTCTTGAACCACTCCTATAATGTTGAAGTGATCAATAATTGAGAATTTTGTCACATGTCTTGTTATGACGCTCATCATGTATGCTAGTGGTTTAGATACTCCTAAGGAAAAGGCAAACATTTTGAATCCAAATGTTAACATGAGGTTTTTTTTTGAGGATAGTAACACTAATCTAAATATTCACAGCTAGACTACATCCAAAATATGTAGTCCCCTTCAAAAGGTATTGCAGTCTAGTAATATTGCCGTCTATCACCTATATTTCTTACAAATAATCCAAGACATCCCAGATATCTTGCGCTTGGACTAAAAAGTTCTCTTTTCACCAAAAATAAAATAAAGCTAGAGAATTCATCTTGAAGCTCTGAAGTCCATTCTGCTTGTCTTCAAAGCACCTCTGGTTAGAGTTTTCTCAAAAGGCCTGCATATCCACTATGGTTCAGGGCCGATCATAATCCCTATGATGTGATAATTCCGTTGAATAAGGTGGAATGTAAGTAAAAGAAATTCATTTATAAATACCAATTAAGTGCCAAACAATGCGTAGATGTCCATGTTACTTGGAAAAGTTTCCATATGATGCTATATTTCATGTTCTTTATTCATTCTTTGTTATTTCGTATTAATTATTTACTTCTTATTACAGCCTTTTATATAGTTGAGCTTGTGCTAAGTTGTTTATTCTTTTGCACCATCAGTAATATTCTGAATGTTGCATGTGATGTATCAGGTTGAGGGTAGTTTTGCTATAAAAATTGATTCCACCTTTATCTTGTCCTAAATTCTAAGTTGGATTTTCTTTTCTGATACTCTCACTACAATCCCTCAGGAAAATCTAGTTATATTGTAAAACTGGCATATTTGCCTTGAGCTGTCATATTCTAACTTGCAGAAAGGAAATAAGACAAATAGCTCATAGTTCCTTACAAATGCACGCCTTTGGAGCCAGCTGTTATGTTATTCTCTAAGGCATATCAGCAGTCAAGATTGATTCTTAAACTGATTTTTCAGCTCCATGAATTTGGTCTATTGGTAAGAGCACATCATGTAATGTTTGAGTTAGAGGCATGTCACGAGTTTGAACCCAACCACTTCAAAAAACATAGTTTTTAAGTATAGAATGTGAGAGGGGCGACTCCAATATCCACCGAGTTTTGGACTGCGTCGGCTAGCCCTCGGGGATTTCTGGGTTATCAATTTTCTTAAAAAAGCTGCTATCTCCATACTAATTGCTTATTGAGGGTTATCAATTTTCTTATAAAAGCTGCTATCTCCATACAAATTGCTTATTGAGGATGAATTTGAGCAGTTACTGAAGCAACTAATTTTGAATAATTTGTCCTTCAAAAATAAAACCCACATATCAAGAACTAAATGAAAGGTTATTGCTTCAGGGGTGTAGTTGTTCTTTAATATCTATAAAAGTATGTGAAAGCAATTTAACCAAGGATTAGTTTGTTTGACTCGCTGAAGCAAAAGAAGGCTACTACTTTGGGGCCAGGGTAGCCATAGATAGTCTGACGTCTTAGAGTATTGCTGTAAACAATCAACATCTTGCAAAACATGTCATTGTTAATGTGTGCCCCCCTGTCTCTCATACACACAAAAAATTGCCGAAACAGAAAAAAGAATGGTTGATGAACAGTGCTAGAACCAGCTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTGGTATGATATCATATGACTTTGATTGCTATTAGCTCTACAATAGTTCTTATTCATATGGATTATGATAGTTACTGAAGTTCTATATGCTTACTCTATAACCATGTGACCTTTTTGGCTAATTATTTCTATGCAGTTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAGGTAGGTTGCTAGTTTGTCATTTATTTTGTTTAATGATTCCTTTTTGGATGTAATTGTGGTAATATATTTGCAATCTCTTTAAGTAACTCACCTAATTGGTTGTTAAACAGAGAACTGCCCGAGTTAATGCATTTTTTGCTTTCTCATGGTAACTGTAGATAAAAGTTGTCACAATGGGCAAATATATGTTTGGTTTTCACTTCACATCTTGAGTGCAGTTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGATGTGAGTATCTAGTTTGTGCTCTATGCCATGGGAACTATTTATTTGATCTGATCTACGTTGGCATCTTTATCACTCTGTGGCTGTATAATCAATCTTAGTTACTTGACCTACTTTTCATTTTCGTCCTCTATAATCACTTGGCCTGTTATAAAGTGACATCTTTTCCCCATGTAAAAAAAATGAAATGGCTAAGTTTTCCGAGTGCTCAAATACCCAGACATAGGGGGCCATCTTTCCATTTTGTGAGGCCCCATAATGTTGGCCACCACTGATACTTTGGCAATTACAAGAAGTTAAGTTCATTAAGTATTCTAATTTTTGAACTTCTTGTGATGTTTTCAGGCGTACACTTAACTTTTCGACTATCAATTTAGTTCTTTTCTTAAACTACTGCTAATACATTTGATAAGTTCAAATGACATCTTAAAGTCCATTCCAGTCAAATATCTCATATAAAATGGGACAGATGGAGAGTATAATGTTTCTTTTAGCTTTGATTTGGTATCTTCTCAACAACAGTCCACACTTCATTAACTTTTACTTTTTAGTGTAACTCTTTCTTTTGCCTTTTTTATCTTTTCACCAACAATCCTCCCAAAATAGTGATGTTTTTTGAAGGATCCGATTTGATTGCGGCAATAATTTTGGAGAGACTGAGCGCATAGGGAAGAGTAACTTTTTTTATAACTTGGATTATTAATCTGGGAAGGCCTTACCTAGTTTGTACCCATGTCCCATTTGTGACTACTAATTTTGCAAGAAAAGGTTAAGTTCTATACATTATATCAGAGATACACAGACAATAGACATTAAATAAATTACTTAAAACTAATTAATGTATTTAATTAATTCCAAACAAGTTGTCATGCTTTACTAAAAAGATTGAAGGTTGAATATTTTATCTGGAGAGATTGGGCACTAATAAAATGCACTTACCATAACCATATCAGGGTAATTTTTGATTTGGCATGGAAATTTTCAGTTACTTAGATTTCTTGCAATTTCCTTTCTATTGACATAAATTTGAGAGGATGTTAAATTCATCATGTAGTGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATC</genome_strand>
        <mrna_strand>TTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATGGGTTAATACACACAATGG............................................................................................ACTAAACTGTGCATCAATATCACATGATGGATCACTAGTGGCTGGTGGATTCTCAGATTCATCTGTGAAG.........................................................................................................................................GTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCTCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTG.....................................................................................................................................TTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAG..........................................................................................................................................................................................................................TTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251386" ref_strand="+" ref_description="SGN-E251386 [cLEG-23-N20]">
      <seq>gtggattctcagattcatctgtgaaggtctgggacatggcaaagcttggggaacaaactggtccatcttttttgcagggggagactgattcaccttcaagtgagcatgtgcttggcgcaaatggtggaagaagatgttatacattacttcagggccattcagggcctgtttattctgcatcattcagtccgcacggggattttcttctttcttcatcatcagattcaactgttcgcttatggagcacaaagttaaatgctaatgttgtttgctacaaaggccacaattacccagtatgggatgttcagtttagcccagctggacattattttgccagttcttcacatgaccgcactgcaaggatctggtctgtggacaggatacagcctctaagaataatggccggacacttgtcagatgtagattgtgtgcgatggcacgcaaattgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50306" stop="55683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50606" g_stop="50631" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50632" i_stop="50768" i_length="137">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50769" g_stop="50808" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="66" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50809" i_stop="53551" i_length="2743">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53552" g_stop="53716" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="231" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53717" i_stop="53849" i_length="133">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53850" g_stop="53926" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="308" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53927" i_stop="54144" i_length="218">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54145" g_stop="54261" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="425" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55313" g_stop="55383" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="496" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E251386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50606" e_stop="50631"/>
          <exon e_start="50769" e_stop="50808"/>
          <exon e_start="53552" e_stop="53716"/>
          <exon e_start="53850" e_stop="53926"/>
          <exon e_start="54145" e_stop="54261"/>
          <exon e_start="55313" e_stop="55383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATTCTCAGATTCATCTGTGAAGGTGCTTGTAGCTTCTGAATGACGTTGAAATTATGTTGTCACAAATTACAGTATCTGTTGATCCTTGATCATCTTCTTATCTTTTTTTTGGAACTGGTAACTTTGATCATCTTCTAATCTAAGTCCCCCATTTTACAGGTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCATGTAAGTCCAATATGATGGTCCTCAGCTCCTTTTCAATGTATTGTTATTTCATGTTTCAAGATGTTTTAGTGAATAGAGGTTGAAAAGGTCCCTTTTAATACTACTCCTAGTCACAGTATATCTCGCCAGGACAGCAAGAAAGATTTATTCTTTGCTGCTTTAATTTATTTGATAAGTAGATAAATTTTATTTCACTAAGAAACTGCACTAGGGTTGTGAAGTTTGTTACATCAGAAATTTGCTTAGCAGAAACATGATTAGTTATGAAGGTTTCTCGACTGAACATATAAATGCAGCTTTACATTTCTGATGGAAGTATTTCTTGAACTCCTTGCATTTTTCAATTAGGTAAATAATTTTAATCGAAAAGTCTCCTGTATACAATGCAGTACACAAAAAATAACTATATCAGAATATGATTCTAACAAACAATATCCTATTGTTTTTTTTTTGGAGAAAGTATCAGAATATGATTCTAACAAACAATATCCTACTGTTTTTTGTTTTTTTTGAGAAAGTAACATTTGTATTAAAGAAACTTGGTAAAAAGGTTGTGCTGGTAACCATGTGCAGCTTCCAAAAGTATTGGGAATCCTTTTACTTCTCACTAGGGATCTATCATGTCATATTGGATTCTACATCATTTACATAATCTCTTTGCACCAAAAACATAAACAACACAAAACAATTCATCTCTATCATTTGAATGAGGCTATTGCTGCCTTCAAAACATCTAGGGTTCCTTTCCTTCAAAGCTGTCAACCAAATGCTGGAGTGAGATCTCCCTGATTGTGCCAACATCTCAGTAAATCAGCTGTAGTTCTTGGCACTGTCCATCCGAGTCCAACTATGCTTGGGAAGAGTTGCTACAATTGAGCAGTTACACCAAGATGTAAGAACAGGTGTCTGTTAGACTCTTTAAGTCTGCACAGTATTACTAACATCTGGTGCTCAACTGGAATCCTCTCTTCTTTAAATTTATCGAGTTAGACTGGCCTATAAGAACTTCACTAATGCACCAAAAAGAATCAAGGGATTGAAAAGCTATTCCTTGAGTCTACATACTCGTTTTCTATCTCTTAAAAAGTCTTGAACCACTCCTATAATGTTGAAGTGATCAATAATTGAGAATTTTGTCACATGTCTTGTTATGACGCTCATCATGTATGCTAGTGGTTTAGATACTCCTAAGGAAAAGGCAAACATTTTGAATCCAAATGTTAACATGAGGTTTTTTTTTGAGGATAGTAACACTAATCTAAATATTCACAGCTAGACTACATCCAAAATATGTAGTCCCCTTCAAAAGGTATTGCAGTCTAGTAATATTGCCGTCTATCACCTATATTTCTTACAAATAATCCAAGACATCCCAGATATCTTGCGCTTGGACTAAAAAGTTCTCTTTTCACCAAAAATAAAATAAAGCTAGAGAATTCATCTTGAAGCTCTGAAGTCCATTCTGCTTGTCTTCAAAGCACCTCTGGTTAGAGTTTTCTCAAAAGGCCTGCATATCCACTATGGTTCAGGGCCGATCATAATCCCTATGATGTGATAATTCCGTTGAATAAGGTGGAATGTAAGTAAAAGAAATTCATTTATAAATACCAATTAAGTGCCAAACAATGCGTAGATGTCCATGTTACTTGGAAAAGTTTCCATATGATGCTATATTTCATGTTCTTTATTCATTCTTTGTTATTTCGTATTAATTATTTACTTCTTATTACAGCCTTTTATATAGTTGAGCTTGTGCTAAGTTGTTTATTCTTTTGCACCATCAGTAATATTCTGAATGTTGCATGTGATGTATCAGGTTGAGGGTAGTTTTGCTATAAAAATTGATTCCACCTTTATCTTGTCCTAAATTCTAAGTTGGATTTTCTTTTCTGATACTCTCACTACAATCCCTCAGGAAAATCTAGTTATATTGTAAAACTGGCATATTTGCCTTGAGCTGTCATATTCTAACTTGCAGAAAGGAAATAAGACAAATAGCTCATAGTTCCTTACAAATGCACGCCTTTGGAGCCAGCTGTTATGTTATTCTCTAAGGCATATCAGCAGTCAAGATTGATTCTTAAACTGATTTTTCAGCTCCATGAATTTGGTCTATTGGTAAGAGCACATCATGTAATGTTTGAGTTAGAGGCATGTCACGAGTTTGAACCCAACCACTTCAAAAAACATAGTTTTTAAGTATAGAATGTGAGAGGGGCGACTCCAATATCCACCGAGTTTTGGACTGCGTCGGCTAGCCCTCGGGGATTTCTGGGTTATCAATTTTCTTAAAAAAGCTGCTATCTCCATACTAATTGCTTATTGAGGGTTATCAATTTTCTTATAAAAGCTGCTATCTCCATACAAATTGCTTATTGAGGATGAATTTGAGCAGTTACTGAAGCAACTAATTTTGAATAATTTGTCCTTCAAAAATAAAACCCACATATCAAGAACTAAATGAAAGGTTATTGCTTCAGGGGTGTAGTTGTTCTTTAATATCTATAAAAGTATGTGAAAGCAATTTAACCAAGGATTAGTTTGTTTGACTCGCTGAAGCAAAAGAAGGCTACTACTTTGGGGCCAGGGTAGCCATAGATAGTCTGACGTCTTAGAGTATTGCTGTAAACAATCAACATCTTGCAAAACATGTCATTGTTAATGTGTGCCCCCCTGTCTCTCATACACACAAAAAATTGCCGAAACAGAAAAAAGAATGGTTGATGAACAGTGCTAGAACCAGCTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTGGTATGATATCATATGACTTTGATTGCTATTAGCTCTACAATAGTTCTTATTCATATGGATTATGATAGTTACTGAAGTTCTATATGCTTACTCTATAACCATGTGACCTTTTTGGCTAATTATTTCTATGCAGTTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAGGTAGGTTGCTAGTTTGTCATTTATTTTGTTTAATGATTCCTTTTTGGATGTAATTGTGGTAATATATTTGCAATCTCTTTAAGTAACTCACCTAATTGGTTGTTAAACAGAGAACTGCCCGAGTTAATGCATTTTTTGCTTTCTCATGGTAACTGTAGATAAAAGTTGTCACAATGGGCAAATATATGTTTGGTTTTCACTTCACATCTTGAGTGCAGTTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGATGTGAGTATCTAGTTTGTGCTCTATGCCATGGGAACTATTTATTTGATCTGATCTACGTTGGCATCTTTATCACTCTGTGGCTGTATAATCAATCTTAGTTACTTGACCTACTTTTCATTTTCGTCCTCTATAATCACTTGGCCTGTTATAAAGTGACATCTTTTCCCCATGTAAAAAAAATGAAATGGCTAAGTTTTCCGAGTGCTCAAATACCCAGACATAGGGGGCCATCTTTCCATTTTGTGAGGCCCCATAATGTTGGCCACCACTGATACTTTGGCAATTACAAGAAGTTAAGTTCATTAAGTATTCTAATTTTTGAACTTCTTGTGATGTTTTCAGGCGTACACTTAACTTTTCGACTATCAATTTAGTTCTTTTCTTAAACTACTGCTAATACATTTGATAAGTTCAAATGACATCTTAAAGTCCATTCCAGTCAAATATCTCATATAAAATGGGACAGATGGAGAGTATAATGTTTCTTTTAGCTTTGATTTGGTATCTTCTCAACAACAGTCCACACTTCATTAACTTTTACTTTTTAGTGTAACTCTTTCTTTTGCCTTTTTTATCTTTTCACCAACAATCCTCCCAAAATAGTGATGTTTTTTGAAGGATCCGATTTGATTGCGGCAATAATTTTGGAGAGACTGAGCGCATAGGGAAGAGTAACTTTTTTTATAACTTGGATTATTAATCTGGGAAGGCCTTACCTAGTTTGTACCCATGTCCCATTTGTGACTACTAATTTTGCAAGAAAAGGTTAAGTTCTATACATTATATCAGAGATACACAGACAATAGACATTAAATAAATTACTTAAAACTAATTAATGTATTTAATTAATTCCAAACAAGTTGTCATGCTTTACTAAAAAGATTGAAGGTTGAATATTTTATCTGGAGAGATTGGGCACTAATAAAATGCACTTACCATAACCATATCAGGGTAATTTTTGATTTGGCATGGAAATTTTCAGTTACTTAGATTTCTTGCAATTTCCTTTCTATTGACATAAATTTGAGAGGATGTTAAATTCATCATGTAGTGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGA</genome_strand>
        <mrna_strand>GTGGATTCTCAGATTCATCTGTGAAG.........................................................................................................................................GTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTG.....................................................................................................................................TTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAG..........................................................................................................................................................................................................................TTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402585" ref_strand="+" ref_description="SGN-E402585 [PPC-8-K9]">
      <seq>gtgcttggctcaagtggtggaagaagatgttatacattacttcagggccattcagggcctgtttattctgcatccttcagtccggacggggattttcttctttcttcatcatcagattcaacaattcgcttatggagcacaaagttaaatgctaatgttgtttgctacaaaggccacaattacccagtatgggatgtccagtttagcccagctggacattatttcgccagttcttcacatgaccgcactgcaaagatctggtctgtggacaggatacagcctctgagaataatggccggacacttgtcagatgtagattgtgtgcaatggcatgcaaattgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccagagcggtgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttggtcggtcattcctcctgtgtgtggtcacttgcttttagtggtgaaggctcacttcttgcatctggctctgctgattgcactgtaaaattatggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53293" stop="56049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53593" g_stop="53716" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53717" i_stop="53849" i_length="133">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53850" g_stop="53926" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="201" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53927" i_stop="54144" i_length="218">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54145" g_stop="54261" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="318" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55313" g_stop="55578" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="584" r_length="266" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55691" g_stop="55749" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="644" r_length="60" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E402585" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53593" e_stop="53716"/>
          <exon e_start="53850" e_stop="53926"/>
          <exon e_start="54145" e_stop="54261"/>
          <exon e_start="55313" e_stop="55578"/>
          <exon e_start="55691" e_stop="55749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTGGTATGATATCATATGACTTTGATTGCTATTAGCTCTACAATAGTTCTTATTCATATGGATTATGATAGTTACTGAAGTTCTATATGCTTACTCTATAACCATGTGACCTTTTTGGCTAATTATTTCTATGCAGTTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAGGTAGGTTGCTAGTTTGTCATTTATTTTGTTTAATGATTCCTTTTTGGATGTAATTGTGGTAATATATTTGCAATCTCTTTAAGTAACTCACCTAATTGGTTGTTAAACAGAGAACTGCCCGAGTTAATGCATTTTTTGCTTTCTCATGGTAACTGTAGATAAAAGTTGTCACAATGGGCAAATATATGTTTGGTTTTCACTTCACATCTTGAGTGCAGTTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGATGTGAGTATCTAGTTTGTGCTCTATGCCATGGGAACTATTTATTTGATCTGATCTACGTTGGCATCTTTATCACTCTGTGGCTGTATAATCAATCTTAGTTACTTGACCTACTTTTCATTTTCGTCCTCTATAATCACTTGGCCTGTTATAAAGTGACATCTTTTCCCCATGTAAAAAAAATGAAATGGCTAAGTTTTCCGAGTGCTCAAATACCCAGACATAGGGGGCCATCTTTCCATTTTGTGAGGCCCCATAATGTTGGCCACCACTGATACTTTGGCAATTACAAGAAGTTAAGTTCATTAAGTATTCTAATTTTTGAACTTCTTGTGATGTTTTCAGGCGTACACTTAACTTTTCGACTATCAATTTAGTTCTTTTCTTAAACTACTGCTAATACATTTGATAAGTTCAAATGACATCTTAAAGTCCATTCCAGTCAAATATCTCATATAAAATGGGACAGATGGAGAGTATAATGTTTCTTTTAGCTTTGATTTGGTATCTTCTCAACAACAGTCCACACTTCATTAACTTTTACTTTTTAGTGTAACTCTTTCTTTTGCCTTTTTTATCTTTTCACCAACAATCCTCCCAAAATAGTGATGTTTTTTGAAGGATCCGATTTGATTGCGGCAATAATTTTGGAGAGACTGAGCGCATAGGGAAGAGTAACTTTTTTTATAACTTGGATTATTAATCTGGGAAGGCCTTACCTAGTTTGTACCCATGTCCCATTTGTGACTACTAATTTTGCAAGAAAAGGTTAAGTTCTATACATTATATCAGAGATACACAGACAATAGACATTAAATAAATTACTTAAAACTAATTAATGTATTTAATTAATTCCAAACAAGTTGTCATGCTTTACTAAAAAGATTGAAGGTTGAATATTTTATCTGGAGAGATTGGGCACTAATAAAATGCACTTACCATAACCATATCAGGGTAATTTTTGATTTGGCATGGAAATTTTCAGTTACTTAGATTTCTTGCAATTTCCTTTCTATTGACATAAATTTGAGAGGATGTTAAATTCATCATGTAGTGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTAT-GGGATG</genome_strand>
        <mrna_strand>GTGCTTGGCTCAAGTGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCCTTCAGTCCGGACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACAA.....................................................................................................................................TTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTCCAG..........................................................................................................................................................................................................................TTTAGCCCAGCTGGACATTATTTCGCCAGTTCTTCACATGACCGCACTGCAAAGATCTGGTCTGTGGACAGGATACAGCCTCTGAGAATAATGGCCGGACACTTGTCAGATGTAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCAATGGCATGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGCGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGGTCGGTCATTCCTCCTGTGTGTGGTCACTTGCTTTTAG................................................................................................................TGGTGAAGGCTCACTTCTTGCATCTGGCTCTGCTGATTGCACTGTAAAATTATGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203439" ref_strand="+" ref_description="SGN-E203439 [cLEC-15-A23]">
      <seq>tctggtctgtggacaggatacagcctctaagaataatggccggacacttgtcagatgtagattgtgtgcgatggcacgcaaattgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccagagtggtgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcacttgcttttagtggtgaaggttcacttcttgcatcgggctctgcggattgcactgtaaaattatgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaacaataggcttcggttattgaagaccctacctaccaaagctacaccaatctatgctttgcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53900" stop="56257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54200" g_stop="54261" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55313" g_stop="55578" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="328" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55691" g_stop="55786" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="424" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55787" i_stop="55879" i_length="93">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55880" g_stop="55955" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="500" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E203439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54200" e_stop="54261"/>
          <exon e_start="55313" e_stop="55578"/>
          <exon e_start="55691" e_stop="55786"/>
          <exon e_start="55880" e_stop="55955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGATGTGAGTATCTAGTTTGTGCTCTATGCCATGGGAACTATTTATTTGATCTGATCTACGTTGGCATCTTTATCACTCTGTGGCTGTATAATCAATCTTAGTTACTTGACCTACTTTTCATTTTCGTCCTCTATAATCACTTGGCCTGTTATAAAGTGACATCTTTTCCCCATGTAAAAAAAATGAAATGGCTAAGTTTTCCGAGTGCTCAAATACCCAGACATAGGGGGCCATCTTTCCATTTTGTGAGGCCCCATAATGTTGGCCACCACTGATACTTTGGCAATTACAAGAAGTTAAGTTCATTAAGTATTCTAATTTTTGAACTTCTTGTGATGTTTTCAGGCGTACACTTAACTTTTCGACTATCAATTTAGTTCTTTTCTTAAACTACTGCTAATACATTTGATAAGTTCAAATGACATCTTAAAGTCCATTCCAGTCAAATATCTCATATAAAATGGGACAGATGGAGAGTATAATGTTTCTTTTAGCTTTGATTTGGTATCTTCTCAACAACAGTCCACACTTCATTAACTTTTACTTTTTAGTGTAACTCTTTCTTTTGCCTTTTTTATCTTTTCACCAACAATCCTCCCAAAATAGTGATGTTTTTTGAAGGATCCGATTTGATTGCGGCAATAATTTTGGAGAGACTGAGCGCATAGGGAAGAGTAACTTTTTTTATAACTTGGATTATTAATCTGGGAAGGCCTTACCTAGTTTGTACCCATGTCCCATTTGTGACTACTAATTTTGCAAGAAAAGGTTAAGTTCTATACATTATATCAGAGATACACAGACAATAGACATTAAATAAATTACTTAAAACTAATTAATGTATTTAATTAATTCCAAACAAGTTGTCATGCTTTACTAAAAAGATTGAAGGTTGAATATTTTATCTGGAGAGATTGGGCACTAATAAAATGCACTTACCATAACCATATCAGGGTAATTTTTGATTTGGCATGGAAATTTTCAGTTACTTAGATTTCTTGCAATTTCCTTTCTATTGACATAAATTTGAGAGGATGTTAAATTCATCATGTAGTGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAAGTAAGTATTAATGAAGCAGACATTTACTGTGGCATTTGTTTTCTCTTAGATTGCTGCTAATACCAGCCCTCTCTCTCTCTATCTATTGAACAGCAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCAC</genome_strand>
        <mrna_strand>TCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAG................................................................................................................TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA.............................................................................................CAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241154" ref_strand="+" ref_description="SGN-E241154 [cLED-26-N23]">
      <seq>cctctaagaataatggccggacacttgtcagatgtagattgtgtgcgatggcacgcaaattgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccagagtggtgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcacttgcttttagtggtgaaggttcacttcttgcatcgggctctgcggattgcactgtaaaattatgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaacaataggcttcggttattgaagaccctacctaccaaagctacaccaatctatgctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53923" stop="56253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54223" g_stop="54261" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55313" g_stop="55578" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="305" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55691" g_stop="55786" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="401" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55787" i_stop="55879" i_length="93">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55880" g_stop="55953" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="475" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E241154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54223" e_stop="54261"/>
          <exon e_start="55313" e_stop="55578"/>
          <exon e_start="55691" e_stop="55786"/>
          <exon e_start="55880" e_stop="55953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGATGTGAGTATCTAGTTTGTGCTCTATGCCATGGGAACTATTTATTTGATCTGATCTACGTTGGCATCTTTATCACTCTGTGGCTGTATAATCAATCTTAGTTACTTGACCTACTTTTCATTTTCGTCCTCTATAATCACTTGGCCTGTTATAAAGTGACATCTTTTCCCCATGTAAAAAAAATGAAATGGCTAAGTTTTCCGAGTGCTCAAATACCCAGACATAGGGGGCCATCTTTCCATTTTGTGAGGCCCCATAATGTTGGCCACCACTGATACTTTGGCAATTACAAGAAGTTAAGTTCATTAAGTATTCTAATTTTTGAACTTCTTGTGATGTTTTCAGGCGTACACTTAACTTTTCGACTATCAATTTAGTTCTTTTCTTAAACTACTGCTAATACATTTGATAAGTTCAAATGACATCTTAAAGTCCATTCCAGTCAAATATCTCATATAAAATGGGACAGATGGAGAGTATAATGTTTCTTTTAGCTTTGATTTGGTATCTTCTCAACAACAGTCCACACTTCATTAACTTTTACTTTTTAGTGTAACTCTTTCTTTTGCCTTTTTTATCTTTTCACCAACAATCCTCCCAAAATAGTGATGTTTTTTGAAGGATCCGATTTGATTGCGGCAATAATTTTGGAGAGACTGAGCGCATAGGGAAGAGTAACTTTTTTTATAACTTGGATTATTAATCTGGGAAGGCCTTACCTAGTTTGTACCCATGTCCCATTTGTGACTACTAATTTTGCAAGAAAAGGTTAAGTTCTATACATTATATCAGAGATACACAGACAATAGACATTAAATAAATTACTTAAAACTAATTAATGTATTTAATTAATTCCAAACAAGTTGTCATGCTTTACTAAAAAGATTGAAGGTTGAATATTTTATCTGGAGAGATTGGGCACTAATAAAATGCACTTACCATAACCATATCAGGGTAATTTTTGATTTGGCATGGAAATTTTCAGTTACTTAGATTTCTTGCAATTTCCTTTCTATTGACATAAATTTGAGAGGATGTTAAATTCATCATGTAGTGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAAGTAAGTATTAATGAAGCAGACATTTACTGTGGCATTTGTTTTCTCTTAGATTGCTGCTAATACCAGCCCTCTCTCTCTCTATCTATTGAACAGCAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGC</genome_strand>
        <mrna_strand>CCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAG................................................................................................................TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA.............................................................................................CAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253821" ref_strand="+" ref_description="SGN-E253821 [cLEG-28-M12]">
      <seq>attgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccagagtggtgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcacttgcttttagtggtgaaggttcacttcttgcatcgggctctgcggattgcactgtaaaattatgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaacaataggcttcggttattgaagaccctacctaccaaagctacaccaatctatgctttgcacttttcacgaagaaatcttttatttgctgctggagctttctcgaaaagtgcacgagtcccttgctttaaagtctcttgacgtgagattacatcatggttcccttgcaaattttggtgcaatcatcaatggcaagttttacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55032" stop="56479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55332" g_stop="55578" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55691" g_stop="55786" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="343" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="55879" i_length="93">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55880" g_stop="55955" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55956" i_stop="56035" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.489" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56036" g_stop="56179" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="563" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E253821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55332" e_stop="55578"/>
          <exon e_start="55691" e_stop="55786"/>
          <exon e_start="55880" e_stop="55955"/>
          <exon e_start="56036" e_stop="56179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAAGTAAGTATTAATGAAGCAGACATTTACTGTGGCATTTGTTTTCTCTTAGATTGCTGCTAATACCAGCCCTCTCTCTCTCTATCTATTGAACAGCAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCACGTAAGAATTGTTATGCTTGCTTCTTTCTGTGGCTTTATTATTGGATCCTCTAAAAGTTGCATGTTATACTCTGTGAGCAGTTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTC</genome_strand>
        <mrna_strand>ATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAG................................................................................................................TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA.............................................................................................CAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCAC................................................................................TTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704710" ref_strand="+" ref_description="SGN-E704710 [FA25AB11]">
      <seq>caaaactgtacgcttgtgggacgtccagagtggtgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcacttgcttttagtggtgaaggttcacttcttgcatcgggctctgcggattgcactgtaaaattatgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaacaataggcttcggttattgaagaccctacctaccaaagctacaccaatctatgctttgcacttttcacgaagaaatcttttatttgctgctggagctttctcgaaaagtgcacgagtcccttgctttaaagtctcttgacgtgagattacatcatggttcccttgcaaattttggtgcaatcatcaatggcaagttttacttctcagacctcggttttgttagaggagcaactcatgttggtgacacgtgcatctcacaatacaattttgcatcacatggtgtaatttggaatgtggaggtcttttattttctatggtggatgaacgtcggatttgtaaatgcttatttaatgtatgtccttanaatgacgatgttcctgtaaccctgataccattgcttatcccattggtggaatattggaagcatgggcagaaaggtatacaatttagcatcttctaaaactatattttgggagtaggatgtctncagcatttgtggttttgtgtatgttaaccatgttttgttacagaccccttccctgtttctaccttgtggattatgtatgaattttagctgaactaaaaagttgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55063" stop="56869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55363" g_stop="55578" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55691" g_stop="55786" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="312" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="55879" i_length="93">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55880" g_stop="55955" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="388" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55956" i_stop="56035" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.489" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56036" g_stop="56569" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="921" r_length="533" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E704710" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55363" e_stop="55578"/>
          <exon e_start="55691" e_stop="55786"/>
          <exon e_start="55880" e_stop="55955"/>
          <exon e_start="56036" e_stop="56569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAAGTAAGTATTAATGAAGCAGACATTTACTGTGGCATTTGTTTTCTCTTAGATTGCTGCTAATACCAGCCCTCTCTCTCTCTATCTATTGAACAGCAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCACGTAAGAATTGTTATGCTTGCTTCTTTCTGTGGCTTTATTATTGGATCCTCTAAAAGTTGCATGTTATACTCTGTGAGCAGTTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAATTTGGAATGTGGAGGTCTTTTATTTTCTATGGTGGATGAACGTCGGATTTGTAAATGCTTATTTAATGTATGTCCTTAAAATGACGATGTTCCTGTAACCCTGATACCATTGCTTATCCCATTGGTGGAATATTGGAAGCATGGGCAGAAAGGTATACAATTTAGCATCTTCTAAAACTATATTTTGGGAGTAGGATGTCTCAAGCATTTGTGGTTTTGTGTATGTTAACCATGTTTGTTTACAGACCCTTTCCCTGTTTCTACCTTGTGGATTATGTATGAATTTTAGCTGAACTAAAAAGTTTGAAAT</genome_strand>
        <mrna_strand>CAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAG................................................................................................................TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA.............................................................................................CAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCAC................................................................................TTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAATTTGGAATGTGGAGGTCTTTTATTTTCTATGGTGGATGAACGTCGGATTTGTAAATGCTTATTTAATGTATGTCCTTANAATGACGATGTTCCTGTAACCCTGATACCATTGCTTATCCCATTGGTGGAATATTGGAAGCATGGGCAGAAAGGTATACAATTTAGCATCTTCTAAAACTATATTTTGGGAGTAGGATGTCTNCAGCATTTGTGGTTTTGTGTATGTTAACCATGTTTTGTTACAGACCCCTTCCCTGTTTCTACCTTGTGGATTATGTATGAATTTTAGCTGAACTAAAAAG-TTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244420" ref_strand="+" ref_description="SGN-E244420 [cLEF-3-K13]">
      <seq>ataggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcacttgcttttagtggtgaaggttcacttcttgcatcgggctctgcggattgcactgtaaaattatgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaacaataggcttcggttattgaagaccctacctaccaaagctacaccaatctatgctttgcacttttcacgaagaaatcttttatttgctgctggagctttctcgaaaagtgcacgagtcccttgctttaaagtctcttgacgtgagattacatcatggttcccttgcaaattttggtgcaatcatcaatggcaagttttacttctcagacctcggttttgttagaggagcaactcatgttggtgacacgtgcatcttacaatacaattttgcatcacatggtgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55122" stop="56560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55422" g_stop="55578" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55691" g_stop="55786" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="253" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55787" i_stop="55879" i_length="93">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55880" g_stop="55955" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="329" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55956" i_stop="56035" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.489" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56036" g_stop="56260" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="554" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E244420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55422" e_stop="55578"/>
          <exon e_start="55691" e_stop="55786"/>
          <exon e_start="55880" e_stop="55955"/>
          <exon e_start="56036" e_stop="56260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAGGTAGGGATAGAAATGAACTTAACCTTAAGTTTGTGTACGCTCAGAGATGCACTTGAGTATGAAGTTCATTGAATATAGATTATATTTTTGAAGCTTTTTTGTCTTATTTCAGTGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAAGTAAGTATTAATGAAGCAGACATTTACTGTGGCATTTGTTTTCTCTTAGATTGCTGCTAATACCAGCCCTCTCTCTCTCTATCTATTGAACAGCAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCACGTAAGAATTGTTATGCTTGCTTCTTTCTGTGGCTTTATTATTGGATCCTCTAAAAGTTGCATGTTATACTCTGTGAGCAGTTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAAT</genome_strand>
        <mrna_strand>ATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAG................................................................................................................TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA.............................................................................................CAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCAC................................................................................TTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTTACAATACAATTTTGCATCACATGGTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712512" ref_strand="+" ref_description="SGN-E712512 [FB05AC05]">
      <seq>ttatagtctcttgacgtgagattacatcatggttcccttgcaaattttggtgcaatcatcaatggcaagttttacttctcagacctcggttttgttagaggagcaactcatgttggtgacacgtgcatctcacaatacaattttgcatcacatggtgtaatttggaatgtggaggtcttttattttctatggtggatgaacgtcggatttgtaaatgcttatttaatgtatgtccttaaaatgacgatgttcctgtaaccctgataccattgcttatcccattggtggaatattggaagcatgggcagaaaggtatacaatttagcatcttctaaaactatattttgggagtaggatgtctcaagcatttgtggttttgtgtatgttaaccatgtttgtttacagaccctttccctgtttctaccttgtggattatgtatgaattttagctgaactaaaaagtttgaaattcgtttggattagcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55800" stop="56886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56100" g_stop="56585" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="503"/>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E712512" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56100" e_stop="56585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAATTTGGAATGTGGAGGTCTTTTATTTTCTATGGTGGATGAACGTCGGATTTGTAAATGCTTATTTAATGTATGTCCTTAAAATGACGATGTTCCTGTAACCCTGATACCATTGCTTATCCCATTGGTGGAATATTGGAAGCATGGGCAGAAAGGTATACAATTTAGCATCTTCTAAAACTATATTTTGGGAGTAGGATGTCTCAAGCATTTGTGGTTTTGTGTATGTTAACCATGTTTGTTTACAGACCCTTTCCCTGTTTCTACCTTGTGGATTATGTATGAATTTTAGCTGAACTAAAAAGTTTGAAATTCGTTTGGATTAGCTT</genome_strand>
        <mrna_strand>TTATAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAATTTGGAATGTGGAGGTCTTTTATTTTCTATGGTGGATGAACGTCGGATTTGTAAATGCTTATTTAATGTATGTCCTTAAAATGACGATGTTCCTGTAACCCTGATACCATTGCTTATCCCATTGGTGGAATATTGGAAGCATGGGCAGAAAGGTATACAATTTAGCATCTTCTAAAACTATATTTTGGGAGTAGGATGTCTCAAGCATTTGTGGTTTTGTGTATGTTAACCATGTTTGTTTACAGACCCTTTCCCTGTTTCTACCTTGTGGATTATGTATGAATTTTAGCTGAACTAAAAAGTTTGAAATTCGTTTGGATTAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226670" ref_strand="+" ref_description="SGN-E226670 [cLEL-26-D18](-)">
      <seq>gttttttttttcagtttaaagcatattgttagagatgtaattggttagatttatcattttggttgctagctgtattcacttttgttacttttagccctcttagcgtaggcagtagatactctgttgatgagtattttatggatgcgttggatcatcaattaccatcttttctcttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58196" stop="57421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57896" g_stop="57718" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E226670" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57896" e_stop="57718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTTTCAGTTTAAAGCATATTGTTAGAGATGTAATTGGTTAGATTTATCATTTTGGTTGCTAGCTGTATTCACTTTTGTTACTTTTAGCCCTCTTAGCGTAGGAAGGAGATACTCTGTTGATGAGTATTTTATGGATGCGTTGGATCATAAATTACCATCTCTTCTCTTGGCT</genome_strand>
        <mrna_strand>GTTTTTTTTTTCAGTTTAAAGCATATTGTTAGAGATGTAATTGGTTAGATTTATCATTTTGGTTGCTAGCTGTATTCACTTTTGTTACTTTTAGCCCTCTTAGCGTAGGCAGTAGATACTCTGTTGATGAGTATTTTATGGATGCGTTGGATCATCAATTACCATCTTTTCTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704890" ref_strand="+" ref_description="SGN-E704890 [FA25CC05]">
      <seq>gaaagatcagagtttggtggccattagatgaactattttatgaagggacggttagcaattatgattcttccaggaagaagttcacagttgactatactgatggagagacagaaaaattgaatctcttgaaggaacgctgggaacttgttgaagatgataatatgtcagaagaggagcaagtagccagcgctgatgcagcagcttcggaaagtcataagaagaaaaaacctaggaatgctgaaccatcactaaagcatgaaatggatgcttcacctaaaagcaagtcaaaagaggcgacagctaaatctggacagaaatccaagggtaaactcaacttgaaagatggcacctcaaaatctgccgggaaagctgatgacacaaccagcagcaagtctgcggctccatccaaaaggagcactggcaaatcagttgatactgaaaagccatctgccaggtctaaagatgttagtagtagtactcccaaatccaagtccaggcaagatactccatcaacaactgccaacaagtccaagcaagaaacagttaaagctgccaacaagtccaaaaccaaaaccccccaaagtggtggcaagtccggtgccaatggttcggagacgctaaaatctagttcatcaaaggttaaagacagtgcgaaccagaaggaaaaagcaactaactcagcaaaaacccctgatggcagcaccaaggagaaactgtctagtgcatcaaaagaacgacagagtgagccccaagactggaaagaagcgtgcgaggggggaaaaactgattatttgttgcacattgtaatagtggagctcctcctacttacattcttggacccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60252" stop="57728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59952" g_stop="59919" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59918" i_stop="59760" i_length="159">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59759" g_stop="59708" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="86" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59707" i_stop="59621" i_length="87">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59620" g_stop="59534" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="173" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59533" i_stop="59462" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59461" g_stop="59424" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="211" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59423" i_stop="58756" i_length="668">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58755" g_stop="58687" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="280" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58686" i_stop="58592" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58591" g_stop="58028" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="846" r_length="566" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E704890" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59952" e_stop="59919"/>
          <exon e_start="59759" e_stop="59708"/>
          <exon e_start="59620" e_stop="59534"/>
          <exon e_start="59461" e_stop="59424"/>
          <exon e_start="58755" e_stop="58687"/>
          <exon e_start="58591" e_stop="58028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCAGAGTTTGGTGGCCATTAGATGAACTGTAAGTGCTCGTCTTCTTTTATGCTGTGGAACAATTTTTTTCCTTCCTCATTCTTGACATGATAGTTTGGAATTACTGTGTTTTTGAGTTTACTGTATCTGAGAACGTTTCCAGTTCTGTATTAGTTGGGATAATTTTTTATCTGATTTGTTGTCACAGATTTTATGAAGGGACGGTTAGCAATTATGATTCTTCCAGGAAGAAGTTCACAGTGAGTGCAGTTTGTTTTCTGTTTCAAGAAATGGAATTGTTCCCTTGATGTAACACTCATATGTTTGATTAAATTTTTTCTTATTAGGTTGACTATACTGATGGAGAGACAGAAAAATTGAATCTCTTGAAGGAACGCTGGGAACTTGTTGAAGATGATAATATGTCAGAAGAGGTTAGTTACTGACTATATTTTGATTTATTATGGTTATGTTTCTTTGATACATTAGGATGCATTTGTTGACAGGAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAGGTAAACCTGGCCATTAGTCACCATTTTCTTTATTTGGTTTTGACTCATTTATTTTCACCTGAAGATGCTTACTCGATTTGAGCCAAGTGATCTGAATTGTCTCCCTTTGTGAAACCCTTTTGCATTTTTTCATCTACAAGTGTCTGTTTAGCATTATAACCACTTGCTAGTATGTCTCAACTGAAGAAACAACACAAGATTCTTGTTGCTGTGTTGTGCTATTTTTGTGTACCTTTGATGTTTTCTGGGTTTGATATCTTTGTCCAGTCTATAGTTTCATTTTTTTTGTGATGCATGCGATGCTATCATAAGCAAAAAAAGCAATTTGTCGATTTCCTTTTTCTGTTTCCAAATATTCTGCTAACTGTAGGAGAAGTGGTAAGTACGTTGATATGAGTGATAGTGATTTCCTTTATTACATGGAAATTCTTCTTCGATGAGCAAAGTGAAACCAATACTCAATTTGATGTTTGTACTCAATTGTGTTATTAGATTATAATATTTTTGTAGCTGCGATTTACTCTCTTTTCTTAATCTCTCTGTGTAGAAGTACTTTTAACATTCATTCTATTCATTGTGTTAGGTAAAGAAAGGACAGAAATCTTCCAAGTGTAGTTAGCAGTATGACTATTCTTTGTTTAACTTTGACTCTGTTTTTGATATGTCAGTCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAGGTTGGTATAATCTCCTTAACCATGTGTTTGTGTGACATATTAACATCTGACGTTTTGAAAGCCTAATGGTACCAATGGTGGGGTTCTTTTTGCAGCAAGTCAAAAGAGGCGACAGCTAAATCTGGACAGAAATCCAAGGGTAAACTCAACTTGAAAGATGGCACCTCAAAATCTGCCGGGAAAGCTGATGACACAACCAGCAGCAAGTCTGCGGCTCCATCCAAAAGGAGCACTGGCAAATCAGTTGATACTGAAAAGCCATCTGCCAGGTCTAAAGATGTTAGTAGTAGTACTCCCAAATCCAAGTCCAGGCAAGATACTCCATCAACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCCAACAAGTCCAAAACCAAAACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAGAAGCTAAAATCTAGTTCATCAAAGGTTAAAGAGAGTGGGAACCAGAAGGAAAAAGCAACTAACTCAGCAAAAACCCCTGATGGCAGCACCAAGGAGAAACTGTCTAGTGCATCAAAGGAACGACAGAGTGAG-CCCAAGAGTGGAAAGAAGCGTGCGA-GGGGGAAAAACTGATTATTTGTTGCACATTGTAATAGTGGAGCTCCTCCTACTTACATTCTTGGACCCATTGC</genome_strand>
        <mrna_strand>GAAAGATCAGAGTTTGGTGGCCATTAGATGAACT...............................................................................................................................................................ATTTTATGAAGGGACGGTTAGCAATTATGATTCTTCCAGGAAGAAGTTCACA.......................................................................................GTTGACTATACTGATGGAGAGACAGAAAAATTGAATCTCTTGAAGGAACGCTGGGAACTTGTTGAAGATGATAATATGTCAGAAGAG........................................................................GAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAG...............................................................................................CAAGTCAAAAGAGGCGACAGCTAAATCTGGACAGAAATCCAAGGGTAAACTCAACTTGAAAGATGGCACCTCAAAATCTGCCGGGAAAGCTGATGACACAACCAGCAGCAAGTCTGCGGCTCCATCCAAAAGGAGCACTGGCAAATCAGTTGATACTGAAAAGCCATCTGCCAGGTCTAAAGATGTTAGTAGTAGTACTCCCAAATCCAAGTCCAGGCAAGATACTCCATCAACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCCAACAAGTCCAAAACCAAAACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAGACGCTAAAATCTAGTTCATCAAAGGTTAAAGACAGTGCGAACCAGAAGGAAAAAGCAACTAACTCAGCAAAAACCCCTGATGGCAGCACCAAGGAGAAACTGTCTAGTGCATCAAAAGAACGACAGAGTGAGCCCCAAGACTGGAAAGAAGCGTGCGAGGGGGGAAAAACTGATTATTTGTTGCACATTGTAATAGTGGAGCTCCTCCTACTTACATTCTTGGACCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286841" ref_strand="+" ref_description="SGN-E286841 [cLES-14-H17]">
      <seq>gagcaagtagccagcgctgatgcagcagcttcggaaagtcataagaagaaaaaacctaggaatgctgaaccatcactaaagcatgaaatggatgcttcacctaaaagcaagtcaaaagaggcgacagctaaatctggacagaaatccaagggtaaactcaacttgaaagatggcacctcaaaatctgccgggaaagctgatgacacaaccagcagcaagtctgcggctccatccaaaaggagcactggcaaatcagttgatactgaaaagccatctgccaggtctaaagatgttagtagtagtactcccaaatccaagtccaggcaagatactccatcaacaactgccaacaagtccaagcaagaaacagttaaagctgccaacaagtccaaaaccaaaaccccccaaagtggtggcaagtccggtgccaatggttcggagaagctaaaatctagttcatcaaaggttaaagagagtgggaaccagaaggaaaaagcaactaactcagcaaaaacccctgatggcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59761" stop="57869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59461" g_stop="59424" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59423" i_stop="58756" i_length="668">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58755" g_stop="58687" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="107" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58686" i_stop="58592" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58591" g_stop="58169" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="530" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E286841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59461" e_stop="59424"/>
          <exon e_start="58755" e_stop="58687"/>
          <exon e_start="58591" e_stop="58169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAGGTAAACCTGGCCATTAGTCACCATTTTCTTTATTTGGTTTTGACTCATTTATTTTCACCTGAAGATGCTTACTCGATTTGAGCCAAGTGATCTGAATTGTCTCCCTTTGTGAAACCCTTTTGCATTTTTTCATCTACAAGTGTCTGTTTAGCATTATAACCACTTGCTAGTATGTCTCAACTGAAGAAACAACACAAGATTCTTGTTGCTGTGTTGTGCTATTTTTGTGTACCTTTGATGTTTTCTGGGTTTGATATCTTTGTCCAGTCTATAGTTTCATTTTTTTTGTGATGCATGCGATGCTATCATAAGCAAAAAAAGCAATTTGTCGATTTCCTTTTTCTGTTTCCAAATATTCTGCTAACTGTAGGAGAAGTGGTAAGTACGTTGATATGAGTGATAGTGATTTCCTTTATTACATGGAAATTCTTCTTCGATGAGCAAAGTGAAACCAATACTCAATTTGATGTTTGTACTCAATTGTGTTATTAGATTATAATATTTTTGTAGCTGCGATTTACTCTCTTTTCTTAATCTCTCTGTGTAGAAGTACTTTTAACATTCATTCTATTCATTGTGTTAGGTAAAGAAAGGACAGAAATCTTCCAAGTGTAGTTAGCAGTATGACTATTCTTTGTTTAACTTTGACTCTGTTTTTGATATGTCAGTCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAGGTTGGTATAATCTCCTTAACCATGTGTTTGTGTGACATATTAACATCTGACGTTTTGAAAGCCTAATGGTACCAATGGTGGGGTTCTTTTTGCAGCAAGTCAAAAGAGGCGACAGCTAAATCTGGACAGAAATCCAAGGGTAAACTCAACTTGAAAGATGGCACCTCAAAATCTGCCGGGAAAGCTGATGACACAACCAGCAGCAAGTCTGCGGCTCCATCCAAAAGGAGCACTGGCAAATCAGTTGATACTGAAAAGCCATCTGCCAGGTCTAAAGATGTTAGTAGTAGTACTCCCAAATCCAAGTCCAGGCAAGATACTCCATCAACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCCAACAAGTCCAAAACCAAAACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAGAAGCTAAAATCTAGTTCATCAAAGGTTAAAGAGAGTGGGAACCAGAAGGAAAAAGCAACTAACTCAGCAAAAACCCCTGATGGCAGCAC</genome_strand>
        <mrna_strand>GAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAG...............................................................................................CAAGTCAAAAGAGGCGACAGCTAAATCTGGACAGAAATCCAAGGGTAAACTCAACTTGAAAGATGGCACCTCAAAATCTGCCGGGAAAGCTGATGACACAACCAGCAGCAAGTCTGCGGCTCCATCCAAAAGGAGCACTGGCAAATCAGTTGATACTGAAAAGCCATCTGCCAGGTCTAAAGATGTTAGTAGTAGTACTCCCAAATCCAAGTCCAGGCAAGATACTCCATCAACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCCAACAAGTCCAAAACCAAAACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAGAAGCTAAAATCTAGTTCATCAAAGGTTAAAGAGAGTGGGAACCAGAAGGAAAAAGCAACTAACTCAGCAAAAACCCCTGATGGCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325374" ref_strand="+" ref_description="SGN-E325374 [cTOC-1-I1]">
      <seq>ctgatcgctctgttaaacatgatgaagataacgaagaggaaattcccaggaccactacaaagagaaagcgttcttcaagcaagggcagggggagtaggcaagttgtgcagaagagtgtgcctacgcccgagtctcccgacaattcaactaaacatataagcgacgaagatgagactgacacaagtgcaaagaaaaagccttcttcaggcaacgacagggtaacagagactgtgcaatgtgataagaatctggttggtagaaagatcagagtttggtggccattagatgaactattttatgaagggacggttagcaattatgattcttccaggaagaagttcacagttgactatactgatggagagacagaaaaattgaatctcttgaaggaacgctgggaacttgttgaagatgataatatgtcagaagaggagcaagtagccagcgctgatgcagcagcttcggaaagtcataagaagaaaaaacctaggaatgctgaaccatcactaaagcatgaaatggatgcttcacctaaaagcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61142" stop="58387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60842" g_stop="60754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60753" i_stop="60582" i_length="172">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60581" g_stop="60453" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="218" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60452" i_stop="59993" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59992" g_stop="59919" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="292" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59918" i_stop="59760" i_length="159">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59759" g_stop="59708" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="344" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59707" i_stop="59621" i_length="87">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59620" g_stop="59534" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="431" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59533" i_stop="59462" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59461" g_stop="59424" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="469" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59423" i_stop="58756" i_length="668">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58755" g_stop="58687" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="538" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58686" i_stop="58592" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58591" g_stop="58586" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="544" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E325374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60842" e_stop="60754"/>
          <exon e_start="60581" e_stop="60453"/>
          <exon e_start="59992" e_stop="59919"/>
          <exon e_start="59759" e_stop="59708"/>
          <exon e_start="59620" e_stop="59534"/>
          <exon e_start="59461" e_stop="59424"/>
          <exon e_start="58755" e_stop="58687"/>
          <exon e_start="58591" e_stop="58586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGCGTTCTTCAAGCAAGGGCAGGGTAAGCATTTTACATCATTGATTTCATGTATAATGCACATTTTATTCGAGGTAGTATTTTGATGTGCTATTTTTTCCTGTTTCTGTAATTCTTATGACTGAGCTTGTTCAATTTTACTTACTTACCATGACCCCTCCGTGTCTGTCTCATCAGTTGTTATTTCGTTGTGCAGGGGAGTAGGCAAGTTGTGCAGAAGAGTGTGCCTACGCCCGAGTCTCCCGACAATTCAACTAAACATATAAGCGACGAAGATGAGACTGACACAAGTGCAAAGAAAAAGCCTTCTTCAGGCAACGACAGGGTAAGCATTTCAAATTACTGTTCATTTTTGATAAAAATACTGTTCATGTTTTCCCATTTTATCCTGGGCTTGTTTTGATACTAATCCTTTACTTTTCTGTGCTATGATGCTTATATTTTGAACTTGAAAATTGATTTTAGTTGATCATTTTCTTCCAATTGATGATATTATTATAAAAGCCAATAGTGGTTATATAGAAAGTTTGTAGCAAATTACCATTTGTTGTGACATGTTTAGTGCTAGTATACTTCTGTTATTGTTTTTACGTGTTTACAGGGCATTACTGCCTAATTTCTCCTTCTGTCCTCTTCTTGTTATTGACATTCTTAGTCACTTATTTTTGATTGTTCGTGTATATTTAATGCACTAAGAAAGCTGTCTTGATGGACTGCTTAGGCCCTACAGTACTCCCGTGTGATTAATCAGCGGTTTGCGCCGCTATACTGCTATTACTTGACAGGTAACAGAGACTGTGCAATGTGATAAGAATCTGGTTGGTAGAAAGATCAGAGTTTGGTGGCCATTAGATGAACTGTAAGTGCTCGTCTTCTTTTATGCTGTGGAACAATTTTTTTCCTTCCTCATTCTTGACATGATAGTTTGGAATTACTGTGTTTTTGAGTTTACTGTATCTGAGAACGTTTCCAGTTCTGTATTAGTTGGGATAATTTTTTATCTGATTTGTTGTCACAGATTTTATGAAGGGACGGTTAGCAATTATGATTCTTCCAGGAAGAAGTTCACAGTGAGTGCAGTTTGTTTTCTGTTTCAAGAAATGGAATTGTTCCCTTGATGTAACACTCATATGTTTGATTAAATTTTTTCTTATTAGGTTGACTATACTGATGGAGAGACAGAAAAATTGAATCTCTTGAAGGAACGCTGGGAACTTGTTGAAGATGATAATATGTCAGAAGAGGTTAGTTACTGACTATATTTTGATTTATTATGGTTATGTTTCTTTGATACATTAGGATGCATTTGTTGACAGGAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAGGTAAACCTGGCCATTAGTCACCATTTTCTTTATTTGGTTTTGACTCATTTATTTTCACCTGAAGATGCTTACTCGATTTGAGCCAAGTGATCTGAATTGTCTCCCTTTGTGAAACCCTTTTGCATTTTTTCATCTACAAGTGTCTGTTTAGCATTATAACCACTTGCTAGTATGTCTCAACTGAAGAAACAACACAAGATTCTTGTTGCTGTGTTGTGCTATTTTTGTGTACCTTTGATGTTTTCTGGGTTTGATATCTTTGTCCAGTCTATAGTTTCATTTTTTTTGTGATGCATGCGATGCTATCATAAGCAAAAAAAGCAATTTGTCGATTTCCTTTTTCTGTTTCCAAATATTCTGCTAACTGTAGGAGAAGTGGTAAGTACGTTGATATGAGTGATAGTGATTTCCTTTATTACATGGAAATTCTTCTTCGATGAGCAAAGTGAAACCAATACTCAATTTGATGTTTGTACTCAATTGTGTTATTAGATTATAATATTTTTGTAGCTGCGATTTACTCTCTTTTCTTAATCTCTCTGTGTAGAAGTACTTTTAACATTCATTCTATTCATTGTGTTAGGTAAAGAAAGGACAGAAATCTTCCAAGTGTAGTTAGCAGTATGACTATTCTTTGTTTAACTTTGACTCTGTTTTTGATATGTCAGTCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAGGTTGGTATAATCTCCTTAACCATGTGTTTGTGTGACATATTAACATCTGACGTTTTGAAAGCCTAATGGTACCAATGGTGGGGTTCTTTTTGCAGCAAGTC</genome_strand>
        <mrna_strand>CTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGCGTTCTTCAAGCAAGGGCAGG............................................................................................................................................................................GGGAGTAGGCAAGTTGTGCAGAAGAGTGTGCCTACGCCCGAGTCTCCCGACAATTCAACTAAACATATAAGCGACGAAGATGAGACTGACACAAGTGCAAAGAAAAAGCCTTCTTCAGGCAACGACAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAGACTGTGCAATGTGATAAGAATCTGGTTGGTAGAAAGATCAGAGTTTGGTGGCCATTAGATGAACT...............................................................................................................................................................ATTTTATGAAGGGACGGTTAGCAATTATGATTCTTCCAGGAAGAAGTTCACA.......................................................................................GTTGACTATACTGATGGAGAGACAGAAAAATTGAATCTCTTGAAGGAACGCTGGGAACTTGTTGAAGATGATAATATGTCAGAAGAG........................................................................GAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAG...............................................................................................CAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310295" ref_strand="+" ref_description="SGN-E310295 [cTOA-1-M6]">
      <seq>gtcagagccttcctgaagagattgcactgaagaagggtgatctcccaatggaggacaactcaaatcaagacggtgagtctaagaaggaaattgaagctggaagtgacttggaagttaagcaggtgaggcgccctttgaggaagactcctttagaaccttgtcgtaaggagaaaggtggatccaccagtgataccgaggctaaaaagctgaagcaatcgggtaagaatgttgacaccaaaaataagagtcaggttggtccatctgcgagaaataaggaagatagcaaaaaacgtggacatggaaaagctagtcaggagacgttgccttcacaagagtctcctgatcgctctgttaaacatgatgaagataacgaagaggaaattcccaggaccactacaaagagaaagcgttcttcaagcaagggcagggggagtaggcaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61610" stop="60266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61310" g_stop="60997" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60996" i_stop="60868" i_length="129">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60867" g_stop="60754" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="428" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60753" i_stop="60582" i_length="172">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60581" g_stop="60566" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="444" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E310295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61310" e_stop="60997"/>
          <exon e_start="60867" e_stop="60754"/>
          <exon e_start="60581" e_stop="60566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAGCCTTCCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGGCGCCCTTTGAGGAAGACTCCTTTAGAACCTTGTCGTAAGGAGAAAGGTGGATCCACCAGTGATACCGAGGCTAAAAAGCTGAAGCAATCGGGTAAGAATGTTGACACCAAAAATAAGAGTCAGGTTGGTCCATCTGCGAGAAATAAGGAAGATAGCAAAAAACGTGGACATGGAAAAGCTAGTCAGGTAAAAACTTACTAAATCTTTAAGTTAATGTGATGTTCAATAATTATCTCGTCTCTGTAAATTCATCTCCCTATTGGACTACCAATGTGTCCCTGTACGTCTTATCAGTAGTTAATTTCACTGGTGCAGGAGACGTTGCCTTCACAAGAGTCTCCTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGCGTTCTTCAAGCAAGGGCAGGGTAAGCATTTTACATCATTGATTTCATGTATAATGCACATTTTATTCGAGGTAGTATTTTGATGTGCTATTTTTTCCTGTTTCTGTAATTCTTATGACTGAGCTTGTTCAATTTTACTTACTTACCATGACCCCTCCGTGTCTGTCTCATCAGTTGTTATTTCGTTGTGCAGGGGAGTAGGCAAGTTG</genome_strand>
        <mrna_strand>GTCAGAGCCTTCCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGGCGCCCTTTGAGGAAGACTCCTTTAGAACCTTGTCGTAAGGAGAAAGGTGGATCCACCAGTGATACCGAGGCTAAAAAGCTGAAGCAATCGGGTAAGAATGTTGACACCAAAAATAAGAGTCAGGTTGGTCCATCTGCGAGAAATAAGGAAGATAGCAAAAAACGTGGACATGGAAAAGCTAGTCAG.................................................................................................................................GAGACGTTGCCTTCACAAGAGTCTCCTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGCGTTCTTCAAGCAAGGGCAGG............................................................................................................................................................................GGGAGTAGGCAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301468" ref_strand="+" ref_description="SGN-E301468 [cLEX-8-K10]">
      <seq>aagagattgcactgaagaatggtgatctcccaatggaggacaactcaaatcaagacggtgagtctaagaaggaaattgaagctggaagtgacttggaagttaagcaggtgaggcgccctttgaggaagactcctttagaaccttgtcgtaaggagaaaggtggatccaccagtgataccgaggctaaaaagctgaagcaatcgggtaagaatgttgacaccaaaaataagagtcaggttggtccatctgcgagaaataaggaagatagcaaaaaacgtggacatggaaaagctagtcaggagacgttgccttcacaagagtctcctgatcgctctgttaaacatgatgaagataacgaagaggaaattcccaggaccactacaaagagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61595" stop="60474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61295" g_stop="60997" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60996" i_stop="60868" i_length="129">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60867" g_stop="60774" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="393" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E301468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61295" e_stop="60997"/>
          <exon e_start="60867" e_stop="60774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGGCGCCCTTTGAGGAAGACTCCTTTAGAACCTTGTCGTAAGGAGAAAGGTGGATCCACCAGTGATACCGAGGCTAAAAAGCTGAAGCAATCGGGTAAGAATGTTGACACCAAAAATAAGAGTCAGGTTGGTCCATCTGCGAGAAATAAGGAAGATAGCAAAAAACGTGGACATGGAAAAGCTAGTCAGGTAAAAACTTACTAAATCTTTAAGTTAATGTGATGTTCAATAATTATCTCGTCTCTGTAAATTCATCTCCCTATTGGACTACCAATGTGTCCCTGTACGTCTTATCAGTAGTTAATTTCACTGGTGCAGGAGACGTTGCCTTCACAAGAGTCTCCTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGC</genome_strand>
        <mrna_strand>AAGAGATTGCACTGAAGAATGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGGCGCCCTTTGAGGAAGACTCCTTTAGAACCTTGTCGTAAGGAGAAAGGTGGATCCACCAGTGATACCGAGGCTAAAAAGCTGAAGCAATCGGGTAAGAATGTTGACACCAAAAATAAGAGTCAGGTTGGTCCATCTGCGAGAAATAAGGAAGATAGCAAAAAACGTGGACATGGAAAAGCTAGTCAG.................................................................................................................................GAGACGTTGCCTTCACAAGAGTCTCCTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333195" ref_strand="+" ref_description="SGN-E333195 [cTOD-20-I19]">
      <seq>ggagggatgaggcatgtttggaagatattgagcctgctgtgaatggatctcccaaatcaatcacaagcaatggtggtagtttggagaatgtgagattgacttctgaaacagaatcgctgatgaaagctggagctcatgatgaggtggatctccatgatgcttcaaagataccatctgaatctgatgattcaagggttgaaaagtctacaaagtcggagcccaagtctatgaagtcagagcccaagtcggagcaaccttctaagaagagaggaaggaagacagtctcttcaataaactcagccgaatcttctcaccaagctcctgaaggaagtggaaaagaaattgagaagcttcaagatcatcagaatgatcaaaacaaagatgaccatagttcagcttctgaagatccagtggttgagcagtccaatctgttggagaaggaaccagaaactaatcagcactctgcacccaaagaatctgaggaggaagttgtggatgttgctcctccatcccaaggtcagagccttcctgaagagattgcactgaagaagggtgatctcccaatggaggacaactcaaatcaagacggtgagtctaagaaagaaattgagctggaagtgacttggaagtaagcaggtgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62126" stop="60883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61826" g_stop="61183" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E333195" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61826" e_stop="61183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGATGAGGCATGTTTGGAAGATATTGAGCCTGCTGTGAATGGATCTCCCAAATCAATCACAAGCAATGGTGGTAGTTTGGAGAATGTGAGATTGACTTCTGAAACAGAATCGCTGATGAAAGCTGGAGCTCATGATGAGGTGGATCTCCATGATGCTTCAAAGATACCATCTGAATCTGATGATTCAAGGGTTGAAAAGTCTACAAAGTCGGAGCCCAAGTCTATGAAGTCAGAGCCCAAGTCGGAGCAACCTTCTAAGAAGAGAGGAAGGAAGACAGTCTCTTCAATAAACTCAGCCGAATCTTCTCACCAAGCTCCTGAAGGAAGTGGAAAAGAAATTGAGAAGCTTCAAGATCATCAGAATGATCAAAACAAAGATGACCATAGTTCAGCTTCTGAAGATCCAGTGGTTGAGCAGTCCAATCTGTTGGAGAAGGAACCAGAAACTAATCAGCACTCTGCACCCAAAGAATCTGAGGAGGAAGTTGTGGATGTTGCTCCTCCATCCCAAGGTCAGAGCCTTCCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGG</genome_strand>
        <mrna_strand>GGAGGGATGAGGCATGTTTGGAAGATATTGAGCCTGCTGTGAATGGATCTCCCAAATCAATCACAAGCAATGGTGGTAGTTTGGAGAATGTGAGATTGACTTCTGAAACAGAATCGCTGATGAAAGCTGGAGCTCATGATGAGGTGGATCTCCATGATGCTTCAAAGATACCATCTGAATCTGATGATTCAAGGGTTGAAAAGTCTACAAAGTCGGAGCCCAAGTCTATGAAGTCAGAGCCCAAGTCGGAGCAACCTTCTAAGAAGAGAGGAAGGAAGACAGTCTCTTCAATAAACTCAGCCGAATCTTCTCACCAAGCTCCTGAAGGAAGTGGAAAAGAAATTGAGAAGCTTCAAGATCATCAGAATGATCAAAACAAAGATGACCATAGTTCAGCTTCTGAAGATCCAGTGGTTGAGCAGTCCAATCTGTTGGAGAAGGAACCAGAAACTAATCAGCACTCTGCACCCAAAGAATCTGAGGAGGAAGTTGTGGATGTTGCTCCTCCATCCCAAGGTCAGAGCCTTCCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAAGAAATTG-AGCTGGAAGTGACTTGGAAG-TAAGCAGGTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316916" ref_strand="+" ref_description="SGN-E316916 [cTOA-27-D23]">
      <seq>aggcgaagcagtccagacggctgagagcgggagggatgatgtttgtttggaagatattgagcctgctgtgaatggatctcccaaatcaatcacaagcaatggtggtagtttggagaatgtgagattgacttctgaaacagaatcgctgatgaaagctggagctcatgatgaggtggatctccatgatgcttcaaagataccatctgaatctgatgattcaagggttgaaaagtctacaaagtcggagcccaagtctatgaagtcagagcccaagtcggagcaaccttctaagaagagaggaaggaagacagtctcttcaataaactcagccgaatcttctcaccaagctcctgaaggaagtggaaaagaaattgagaagcttcaagatcatcagaatgatcaaaacaaagatgaccatagttcagcttctgaagatccagtggttgagcagtcccatctgttggagaaggaaccagaaactaatcagcactctgcacccaaagaatctgaggaggaagttgtggatgttgctcctccatcccaaggtcagagcccttctgaagagattgcactgaaaaacgctgatctccccatggaggacaactcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62145" stop="60946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61839" g_stop="61246" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="610" r_length="594" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E316916" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61839" e_stop="61246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTGAGAGCGGGAGGGATGAGGCATGTTTGGAAGATATTGAGCCTGCTGTGAATGGATCTCCCAAATCAATCACAAGCAATGGTGGTAGTTTGGAGAATGTGAGATTGACTTCTGAAACAGAATCGCTGATGAAAGCTGGAGCTCATGATGAGGTGGATCTCCATGATGCTTCAAAGATACCATCTGAATCTGATGATTCAAGGGTTGAAAAGTCTACAAAGTCGGAGCCCAAGTCTATGAAGTCAGAGCCCAAGTCGGAGCAACCTTCTAAGAAGAGAGGAAGGAAGACAGTCTCTTCAATAAACTCAGCCGAATCTTCTCACCAAGCTCCTGAAGGAAGTGGAAAAGAAATTGAGAAGCTTCAAGATCATCAGAATGATCAAAACAAAGATGACCATAGTTCAGCTTCTGAAGATCCAGTGGTTGAGCAGTCCAATCTGTTGGAGAAGGAACCAGAAACTAATCAGCACTCTGCACCCAAAGAATCTGAGGAGGAAGTTGTGGATGTTGCTCCTCCATCCCAAGGTCAGAGCCTTCCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAAT</genome_strand>
        <mrna_strand>ACGGCTGAGAGCGGGAGGGATGATGTTTGTTTGGAAGATATTGAGCCTGCTGTGAATGGATCTCCCAAATCAATCACAAGCAATGGTGGTAGTTTGGAGAATGTGAGATTGACTTCTGAAACAGAATCGCTGATGAAAGCTGGAGCTCATGATGAGGTGGATCTCCATGATGCTTCAAAGATACCATCTGAATCTGATGATTCAAGGGTTGAAAAGTCTACAAAGTCGGAGCCCAAGTCTATGAAGTCAGAGCCCAAGTCGGAGCAACCTTCTAAGAAGAGAGGAAGGAAGACAGTCTCTTCAATAAACTCAGCCGAATCTTCTCACCAAGCTCCTGAAGGAAGTGGAAAAGAAATTGAGAAGCTTCAAGATCATCAGAATGATCAAAACAAAGATGACCATAGTTCAGCTTCTGAAGATCCAGTGGTTGAGCAGTCCCATCTGTTGGAGAAGGAACCAGAAACTAATCAGCACTCTGCACCCAAAGAATCTGAGGAGGAAGTTGTGGATGTTGCTCCTCCATCCCAAGGTCAGAGCCCTTCTGAAGAGATTGCACTGAAAAACGCTGATCTCCCCATGGAGGACAACTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342700" ref_strand="+" ref_description="SGN-E342700 [cTOF-7-L22]">
      <seq>tccatgccaaggttcataattaagctcacttaccccacccccttcaaacccaaaaatttcctaatgaagaagaaagctttattcacttgttgtttttatgtttatgtataaaatgtatgtacatagtactagtgcatgaagaaattgaatgatgaataatgacattttttgttttctttagccttgttatcagcatctgaatctccttctttctcccctcttcaacccaccacccacccaacctacccacatcctgacaccctccctacccccttctctgcaatatatctgaatctttttcatgttatgtatatataaatagttataatgaatgtgtatgagatctgggctctctctctttttatttaaagaatccaaggttgtaaattgagcaaaaaaggcttcagctttgcatgattcttgcattttttttcaatcttttccctatttgtaaatcaagatctgaaccaccctttaagttagtttgaggaaagatttgatttttctttcttcttgctgaagataatggcacccccattttgtggtttagcttaaagtttgcaaattttttagccaatggggtttcggtttagatcttggttgtgtattacagctctagggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64913" stop="66135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65213" g_stop="65835" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E342700" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65213" e_stop="65835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGCCAAGGTTCATAATTAAGCTCACTTACCCCACCCCCTTCAAACCCAAAAATTTCCTAATGAAGAAGAAAGCTTTATTCACTTGTTGTTTTTATGTTTATGTATAAAATGTATGTACATAGTACTAGTGCATGAAGAAATTGAATGATGAATAATGACATTTTTTGTTTTCTTTAGCCTTGTTATCAGCATCTGAATCTCCTTCTTTCTCCCCTCTTCAACCCACCACCCACCCAACCTACCCACATCCTGACACCCTCCCTACCCCCTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTGGGCTCTCTCTCTTTTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTGCATGATTCTTGCATTTTTTTTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAACCACCCTTTAAGTTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTGGTTTAGATCTTGGTTGTGTATTACAGCTCTAGGGTT</genome_strand>
        <mrna_strand>TCCATGCCAAGGTTCATAATTAAGCTCACTTACCCCACCCCCTTCAAACCCAAAAATTTCCTAATGAAGAAGAAAGCTTTATTCACTTGTTGTTTTTATGTTTATGTATAAAATGTATGTACATAGTACTAGTGCATGAAGAAATTGAATGATGAATAATGACATTTTTTGTTTTCTTTAGCCTTGTTATCAGCATCTGAATCTCCTTCTTTCTCCCCTCTTCAACCCACCACCCACCCAACCTACCCACATCCTGACACCCTCCCTACCCCCTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTGGGCTCTCTCTCTTTTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTGCATGATTCTTGCATTTTTTTTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAACCACCCTTTAAGTTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAAATTTTTTAGCCAATGGGGTTTCGGTTTAGATCTTGGTTGTGTATTACAGCTCTAGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453316" ref_strand="+" ref_description="SGN-E453316 [cSTS-19-J5]">
      <seq>cctcgtgccgaatcggcacgaggcttttaccccacccccttcaaacccaaaaatttcctaatgaagaagaaagcttttttcacttgttgtttttatgtttatgtataaatgtacatagtactagttcatgaagaaatttgaatgatgaataatgacatttttgttttctttagccttgttatcagcatctgaatctccttctttctcccttcaacccaccacccacccaacatacccacattctgacaccctccctacccttctctgcaatatatctgaatctttttcatgttatgtatatataaattgttataatgaatgtgtatgagatctaggctctctctctttatttaaagaatccaaggttgtaaattgagcaaaaaaggcttcagctttacatgattcttgcatttttctcaatcttttccctatttgtaaatcaagatctgaacaccctttgagttattttgaggaaagatttgatttttctttcttcttgctgaagataatggcacccccattttgtggtttagcttaaagtttgcagattttttagccaatggggtttttgtttagatcttggttctgtactacaactctagggttgttgcccctttaccagtaatatcttgatttgagtgttcttgcaccctcttttatctattttgagtctatttttgtgttaaaagtttgtgaaaagcaccatgtgggaagcattttctgagtaagcttccgaagaaatcactgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64942" stop="66279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65242" g_stop="65979" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="752" r_length="726" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E453316" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65242" e_stop="65979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCCCACCCCCTTCAAACCCAAAAATTTCCTAATGAAGAAGAAAGCTTTATTCACTTGTTGTTTTTATGTTTATGTATAAAATGTATGTACATAGTACTAGTGCATGAAGAAA-TTGAATGATGAATAATGACATTTTTTGTTTTCTTTAGCCTTGTTATCAGCATCTGAATCTCCTTCTTTCTCCCCTCTTCAACCCACCACCCACCCAACCTACCCACATCCTGACACCCTCCCTACCCCCTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTGGGCTCTCTCTCTTTTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTGCATGATTCTTGCATTTTTTTTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAACCACCCTTTAAGTTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTGGTTTAGATCTTGGTTGTGTATTACAGCTCTAGGGTTGTTG-CCCTTTACCAGTAATATCTTGATTTGAGTGTTTTTTCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAGCACCATGT-GGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATC</genome_strand>
        <mrna_strand>TTACCCCACCCCCTTCAAACCCAAAAATTTCCTAATGAAGAAGAAAGCTTTTTTCACTTGTTGTTTTTATGTTTATGTAT--AA---ATGTACATAGTACTAGTTCATGAAGAAATTTGAATGATGAATAATGACA-TTTTTGTTTTCTTTAGCCTTGTTATCAGCATCTGAATCTCCTTCTTTCT--CC-CTTCAACCCACCACCCACCCAACATACCCACATTCTGACACCCTCCCTA--CCCTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATTGTTATAATGAATGTGTATGAGATCTAGGCTCTCTCTC--TTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTACATGATTCTTGCA-TTTTTCTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAA-CACCCTTTGAGTTATTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTTGTTTAGATCTTGGTTCTGTACTACAACTCTAGGGTTGTTGCCCCTTTACCAGTAATATCTTGATTTGAGTGTTCTTGCACCCTCTTTTATCTATTTTGAGTCTATTTTTGTGTTAAAAGTTTGTGAAAAGCACCATGTGGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412638" ref_strand="+" ref_description="SGN-E412638 [STM-16-H23]">
      <seq>ctgacaccctccctacccttctctgcaatatatctgaatctttttcatgttatgtatatataaatagttataatgaatgtgtatgagatctaggctctctctctttatttaaagaatccaaggttgtaaattgagcaaaaaaggcttcagctttacatgattcttgcatttttctcaatcttttccctatttgtaaatcaagatctgaacaccctttgagttattttgaggaaagatttgattttgctttcttcttgctgaagataatggcacccccattttgtggtttagcttaaagtttgcagattttttagccaatgaggttttggtttagatcttggttctgtactacagctctagggttgttgccctttaccagtaatatcttgatttgagtgttcttgcaccctcttttatctgttttgagtctgtttttgtgttaaaagtttgtgaaaaacaccatgtggaagcattttctgagtaagcttccgaagaaatcactgaaatctgagtcagtagacttaggaagaggcaattcggactcacacagcccgaatgcaagctcaaatttaggtcctggaaggcctaatagtgttccaaggaggacttcctcagttgtgttcccagcaagtgtgattgcagggattgagcctttgatttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65183" stop="66435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65466" g_stop="66135" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E412638" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65466" e_stop="66135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACCCTCCCTACCCCCTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTGGGCTCTCTCTCTTTTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTGCATGATTCTTGCATTTTTTTTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAACCACCCTTTAAGTTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTGGTTTAGATCTTGGTTGTGTATTACAGCTCTAGGGTTGTTGCCCTTTACCAGTAATATCTTGATTTGAGTGTTTTTTCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAGCACCATGTGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATCTGAGTCAGTAGACTCAGGAAGAGGCAATTCAGACTCAAACAGTCCGAATGCAAGCTCAAATTTAGGCCCTGGAAGGCCTAATAGTGTTCCAAGGAGGACTTCCTCAGTTGTGTTCCCAGCAAGTGTGATTGCAGGGATCGAGCCTTTGATTTCCTT</genome_strand>
        <mrna_strand>CTGACACCCTCCCTACC--CTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTAGGCTCTCTCTC--TTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTACATGATTCTTGCA-TTTTTCTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAA-CACCCTTTGAGTTATTTTGAGGAAAGATTTGATTTTGCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGAGGTTTTGGTTTAGATCTTGGTTCTGTACTACAGCTCTAGGGTTGTTGCCCTTTACCAGTAATATCTTGATTTGAGTGTTCTTGCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAACACCATGTGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATCTGAGTCAGTAGACTTAGGAAGAGGCAATTCGGACTCACACAGCCCGAATGCAAGCTCAAATTTAGGTCCTGGAAGGCCTAATAGTGTTCCAAGGAGGACTTCCTCAGTTGTGTTCCCAGCAAGTGTGATTGCAGGGATTGAGCCTTTGATTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484202" ref_strand="+" ref_description="SGN-E484202 [cSTE-12-O16]">
      <seq>ctttgagttattttgaggaaagatttgattttgctttcttcttgctgaagataatggcacccccattttgtggtttagcttaaagtttgcagattttttagccaatgaggttttggtttagatcttggttctgtactacagctctagggttgttgccctttaccagtaatatcttgatttgagtgttcttgcaccctcttttatctgttttgagtctgtttttgtgttaaaagtttgtgaaaaacaccatgtggaagcattttctgagtaagcttccgaagaaatcactgaaatctgagtcagtagacttaggaagaggcaattcggactcacacagcccgaatgcaagctcaaatttaggtcctggaaggcctaatagtgttccaaggaggacttcctcagttgtgttcccagcaagtgtgattgcagggattgagcctttgatttccttcaaagatgttcccagctctgaaaagatgaatctttttatcagtaagttaagtctctgctgtgtagactttgatttcagggacccaactaagaatgtagcagaaaaggaactaaaaagggctacattgtttgagcttttggattttgtatctgctaatccacccaaattttcagaacctgcaattcttgcattgtgntaaacatgtgctgntaatttgtttcgggttttccctcctaattatcggtctaatagtagccagaccagcgaaaatgatgatgatgagcctacttttgaccctgcctggcctcacttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65385" stop="66752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65685" g_stop="66452" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E484202" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65685" e_stop="66452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAGTTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTGGTTTAGATCTTGGTTGTGTATTACAGCTCTAGGGTTGTTGCCCTTTACCAGTAATATCTTGATTTGAGTGTTTTTTCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAGCACCATGTGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATCTGAGTCAGTAGACTCAGGAAGAGGCAATTCAGACTCAAACAGTCCGAATGCAAGCTCAAATTTAGGCCCTGGAAGGCCTAATAGTGTTCCAAGGAGGACTTCCTCAGTTGTGTTCCCAGCAAGTGTGATTGCAGGGATCGAGCCTTTGATTTCCTTCAAAGATGTTCCCAGCTCTGAAAAGATGAATCTTTTTATCAGTAAGTTAAGTCTCTGCTGTGTAGACTTTGATTTCAGGGACCCAACTAAGAATGTAGCAGAAAAGGAACTAAAAAGGGCTACATTATTTGAGCTTTTGGATTTTGTATCTGCTAATCCACCCAAATTTTCAGAACCTGCAATTCTTGCATTGTGTAAAACATGTGCTGTTAATTTGTTTCGGGTTTTCCCTCCTAATTATCGGTCTAATAATAGCCACGCCAGCGAAAATGATGATGATGAGCCTACTTTTGACCCTGCCTGGCCTCACTTGCAAA</genome_strand>
        <mrna_strand>CTTTGAGTTATTTTGAGGAAAGATTTGATTTTGCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGAGGTTTTGGTTTAGATCTTGGTTCTGTACTACAGCTCTAGGGTTGTTGCCCTTTACCAGTAATATCTTGATTTGAGTGTTCTTGCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAACACCATGTGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATCTGAGTCAGTAGACTTAGGAAGAGGCAATTCGGACTCACACAGCCCGAATGCAAGCTCAAATTTAGGTCCTGGAAGGCCTAATAGTGTTCCAAGGAGGACTTCCTCAGTTGTGTTCCCAGCAAGTGTGATTGCAGGGATTGAGCCTTTGATTTCCTTCAAAGATGTTCCCAGCTCTGAAAAGATGAATCTTTTTATCAGTAAGTTAAGTCTCTGCTGTGTAGACTTTGATTTCAGGGACCCAACTAAGAATGTAGCAGAAAAGGAACTAAAAAGGGCTACATTGTTTGAGCTTTTGGATTTTGTATCTGCTAATCCACCCAAATTTTCAGAACCTGCAATTCTTGCATTGTGNTAAACATGTGCTGNTAATTTGTTTCGGGTTTTCCCTCCTAATTATCGGTCTAATAGTAGCCAGACCAGCGAAAATGATGATGATGAGCCTACTTTTGACCCTGCCTGGCCTCACTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472009" ref_strand="+" ref_description="SGN-E472009 [cSTB-27-K13]">
      <seq>atttatggcaagttcatggttcatagaccttacataaggaagagtataagcaatatgttttaccgcgttgtatttgagtctgagaaacataatgggattgctgaacttttggagattttcggaagtgtggtgacagggtttgctctgccattgaaagaggagcataagatctttttgtcaaggaccttgattcctttgcacaagccaaaatccttggggatttactttcaacagttatcatattgcattaaccagttcatagagaaagatcccaaattggctagcactgtgattaggggtttgttgaagtactggcctatcacaagtacccaaaaggaggtgatgtttttgagtgagctggaagaaattttggaagttattaacatggctgagttccaaaaagtgatggttcccttgttctggcggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66311" stop="67339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66611" g_stop="67039" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E472009" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66611" e_stop="67039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGCAAGTTCATGGTTCACAGGCCTTATATAAGGAAGAGTATAAGCAATGTGTTTTACCGTGTTGTGTTCGAATCGGAGAAACATAATGGGATTGCTGAACTTTTGGAGATATTTGGAAGTGTGGTTACAGGGTTCGCTCTGCCATTGAAAGAGGAGCATAAGATCTTTTTGTCAAGGACCTTGATTCCTTTGCACAAGCCAAAATCCTTGGGGATTTACTTTCAACAGTTATCATATTGTATTAACCAGTTCATAGAGAAAGATCCCAAATTGGCTAGCACTGTGATTAGGGGTTTGTTGAAGTACTGGCCTATCACAAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATC</genome_strand>
        <mrna_strand>ATTTATGGCAAGTTCATGGTTCATAGACCTTACATAAGGAAGAGTATAAGCAATATGTTTTACCGCGTTGTATTTGAGTCTGAGAAACATAATGGGATTGCTGAACTTTTGGAGATTTTCGGAAGTGTGGTGACAGGGTTTGCTCTGCCATTGAAAGAGGAGCATAAGATCTTTTTGTCAAGGACCTTGATTCCTTTGCACAAGCCAAAATCCTTGGGGATTTACTTTCAACAGTTATCATATTGCATTAACCAGTTCATAGAGAAAGATCCCAAATTGGCTAGCACTGTGATTAGGGGTTTGTTGAAGTACTGGCCTATCACAAGTACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318334" ref_strand="+" ref_description="SGN-E318334 [cTOA-29-M3]">
      <seq>aagcacccaaaaggaggtgatgtttttgagtgagctggaagaaattttggaagttattaacatggctgagttccaaaaagtgatggttcccttgttctggcggatcggttgctgcatcaatagttaccattttcaggttgctgaaagggctctcttcctttggaataatgaccaaattgtcaatttgattgcacataaccggcacgtgattctcccgattatattcccagctgtggaaagcaatactcagaaccactggaatcatgctgtgcagaacttgagtctaaatgtaagaaggatgttctccgaaatggatgatgtacttttccttgcttgtcattctcattacaaggaagaacaggagaaaatagacttggaatctgaaaaacggaaggaagcatgggaacagctggagactgcagctagtctacgtccacctgtagctggaaacattgctgtcctggtaacgcctttagcaacttcaatcacttgctaagaggtgatgactccactctatccttgtccccgtgtttttctgtgtatgttccacgcaatctaggaatcatggatggaaaatggctgttgtctggagcaggtttttgnagatcaacccgattaacagccttatctctgttgtaccttagtcctgcaactgtgttgagagcgcgatgggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66634" stop="69415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66934" g_stop="67069" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67070" i_stop="68567" i_length="1498">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68568" g_stop="69115" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="682" r_length="546" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E318334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66934" e_stop="67069"/>
          <exon e_start="68568" e_stop="69115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATCGGTTGCTGCATCAATAGTTACCATTTTCAGGTACTAATACTTGTGTCTCTAGACATGTATATATGTGTGCGTGTGTACTTCAATTTTTATTTGTTGCGTAGTTTCTGAGTTGTTGGTTAGATATGGTTTGTTCAAGGATCTATGAACTAATATTGTGATAAGAATTCTCCTTCTAATTGATACAGAGGATTCAGGCTAATGTGGGATGGAAATGCAATTGATTGAATGATGTATTCTTCATCCAGTTGTTTGACTTGTAAAGAATCAGGATCCTTCCAGATTTACATGTATTTTTAGCTGTGTGGAATTTTTATATGAAAATCTTTAAAATTACTACCAGCTCAGTTCCCTAGAATAAAATTTCTAGATTGCTGACAGGAGTTTTTCATTTAGTTTGAAATGGTCTCAGCAATGAGTCAAGAACTTAAGATTATGAGCCAAAAAGACTTGTGCCCCAAGAGAATGTTCAGGATTTTTTTTGTCTATACGAAACAACAGCCTTGTCAATGAACTGGGTAAACAAGTGGTTTCAAGGGATGACAATAGATAGAAGAGTGCTGATAAAGAAGATCTATTACTGTTTCCCAGGGCATTTCTGGAATCAAGTTAATAAAATTCATCAGAAAACCTGCCAATAAGAAGAATGAGATATATTGCTTAATCTGCATTATTCAGTCAATCATTTAAGTATCTTTGTCCATTCTTAGACAGACTCAAAAAATGGATTTTCAAAGACAGAGAGAAACTGATGAAGTAATTGGATCTTTGACAGAGTTAACTTAAATAAAACCAAGTATCATGGGCCTGTTTGGCCAAATCTTCTGACATCAATCAGTCATTGCACTTCGATGAACGCCACCACCATATTCTGAAGAGTTGGTGGTGGTGGTTATAGTATGATATCTTTAAACCTGCAAGTTCTCAACACATCTAAACATGTGTAAATTTCTACTTGTTATAAACCAAGTCTTTCTGGTAGATACTTGGATTTCAATCATTATATGGCATCACATGGTTCTTCTCCGTTTATCTTTTATTGTTGAGGCTGGAAATTGTTGGGTTCAGGGACACAATTTGCCAAAAACTATAGCATCTCACTTCCAAGGCATATAGTATATTTTTGCGACTAAGTAATGATCTTCTAACCAAGAGTGAGGACTACGCTTATGAATTGTGTATTTATCTAAATACTGGAGGCTTCTACATGAAAAGTGGTTTGTGGATGGGGAAGAGAGAGAGAGAGAAGAATGAGTATATGGCAAAATGGTTGAAAAACAAATTTAGTTCATTGTTGGTTGGTTTCTGAAACCCCTTCCTCCTCTTTATCTTTCCATTCACTCTAGAGTTCTCTCTCAACCCCCCTTTTTTCCCAGTGGGGAGTGATAGATATGAACTTCAGGCCTTCTCTGGTAGAAAGGTTGCCATATGTGATGATCTCTTTGATGCTGCATTAGTCTGTTATCAGTTACCCCCCTCCCTCCCAAAGACATTTACTTGTCATCCTAACAGTCAAACTTCTATTTTCCAGGTTGCTGAAAGGGCTCTCTTCCTTTGGAATAATGACCAAATTGTCAATTTGATTGCACATAACCGGCACGTGATTCTCCCGATTATATTCCCAGCTGTGGAAAGCAATACTCAGAACCACTGGAATCATGCTGTGCAGAACTTGAGTCTAAATGTAAGAAGGATGTTCTCCGAAATGGATGATGTACTTTTCCTTGCTTGTCATTCTCATTACAAGGAAGAACAGGAGAAAATAGACTTGGAATCTGAAAAACGGAAGGAAGCATGGGAACAGCTGGAGACTGCAGCTAGTCTACGTCCACCTGTAGCTGGAAACATTGCTGTCCTGGTAACGCCTTTAGCAACTTCAATCACTTGCTAAGAGGTGATGACTCCACTCTATCCTTGTCCCCGTGTTTTTCTGTGTATGTTCCACGCAATCTAGGAATCATGGATGGAAAATGGCTGTTGTCTGGAGCAGGTTTTTGAAGATCAACCCGATTAACAGCCTTATCTCTGTTGTAACCTTAGTCCTGCAACTGTGTTGAGAGCGCGAATGGGGGGGGGGGG</genome_strand>
        <mrna_strand>AAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATCGGTTGCTGCATCAATAGTTACCATTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAAGGGCTCTCTTCCTTTGGAATAATGACCAAATTGTCAATTTGATTGCACATAACCGGCACGTGATTCTCCCGATTATATTCCCAGCTGTGGAAAGCAATACTCAGAACCACTGGAATCATGCTGTGCAGAACTTGAGTCTAAATGTAAGAAGGATGTTCTCCGAAATGGATGATGTACTTTTCCTTGCTTGTCATTCTCATTACAAGGAAGAACAGGAGAAAATAGACTTGGAATCTGAAAAACGGAAGGAAGCATGGGAACAGCTGGAGACTGCAGCTAGTCTACGTCCACCTGTAGCTGGAAACATTGCTGTCCTGGTAACGCCTTTAGCAACTTCAATCACTTGCTAAGAGGTGATGACTCCACTCTATCCTTGTCCCCGTGTTTTTCTGTGTATGTTCCACGCAATCTAGGAATCATGGATGGAAAATGGCTGTTGTCTGGAGCAGGTTTTTGNAGATCAACCCGATTAACAGCCTTATCTCTGTTGT-ACCTTAGTCCTGCAACTGTGTTGAGAGCGCG-ATGGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318159" ref_strand="+" ref_description="SGN-E318159 [cTOA-29-M5]">
      <seq>aagcacccaaaaggaggtgatgtttttgagtgagctggaagaaattttggaagttattaacatggctgagttccaaaaagtgatggttcccttgttctggcggatcggttgctgcatcaatagttaccattttcaggttgctgaaagggctctcttcctttggaataatgaccaaattgtcaatttgattgcacataaccggcacgtgattctcccgattatattcccagctgtggaaagcaatactcagaaccactggaatcatgctgtgcagaacttgagtctaaatgtaagaaggatgttctccgaaatggatgatgtacttttccttgcttgtcattctcattacaaggaagaacaggagaaaatagacttggaatctgaaaaacggaaggaagcatgggaacagctggagactgcagctagtctacgtccacctgtagctggaaacattgctgtcctggtaacgcctttagcaacttcaatcacttgctaagaggtgatgactccactctatccttgtccccgtgtttttctgtgtatgttccacgcaatctaggaatcatggatggaaaatggctgttgtctggagcaggtttttgaagatcaacccgattaacagccttatctctgttgtaaccttagtcctgcaactgtgttgagacgcnaatggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="+" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66634" stop="69414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66934" g_stop="67069" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67070" i_stop="68567" i_length="1498">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68568" g_stop="69114" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="682" r_length="546" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="+" ref_id="SGN-E318159" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66934" e_stop="67069"/>
          <exon e_start="68568" e_stop="69114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATCGGTTGCTGCATCAATAGTTACCATTTTCAGGTACTAATACTTGTGTCTCTAGACATGTATATATGTGTGCGTGTGTACTTCAATTTTTATTTGTTGCGTAGTTTCTGAGTTGTTGGTTAGATATGGTTTGTTCAAGGATCTATGAACTAATATTGTGATAAGAATTCTCCTTCTAATTGATACAGAGGATTCAGGCTAATGTGGGATGGAAATGCAATTGATTGAATGATGTATTCTTCATCCAGTTGTTTGACTTGTAAAGAATCAGGATCCTTCCAGATTTACATGTATTTTTAGCTGTGTGGAATTTTTATATGAAAATCTTTAAAATTACTACCAGCTCAGTTCCCTAGAATAAAATTTCTAGATTGCTGACAGGAGTTTTTCATTTAGTTTGAAATGGTCTCAGCAATGAGTCAAGAACTTAAGATTATGAGCCAAAAAGACTTGTGCCCCAAGAGAATGTTCAGGATTTTTTTTGTCTATACGAAACAACAGCCTTGTCAATGAACTGGGTAAACAAGTGGTTTCAAGGGATGACAATAGATAGAAGAGTGCTGATAAAGAAGATCTATTACTGTTTCCCAGGGCATTTCTGGAATCAAGTTAATAAAATTCATCAGAAAACCTGCCAATAAGAAGAATGAGATATATTGCTTAATCTGCATTATTCAGTCAATCATTTAAGTATCTTTGTCCATTCTTAGACAGACTCAAAAAATGGATTTTCAAAGACAGAGAGAAACTGATGAAGTAATTGGATCTTTGACAGAGTTAACTTAAATAAAACCAAGTATCATGGGCCTGTTTGGCCAAATCTTCTGACATCAATCAGTCATTGCACTTCGATGAACGCCACCACCATATTCTGAAGAGTTGGTGGTGGTGGTTATAGTATGATATCTTTAAACCTGCAAGTTCTCAACACATCTAAACATGTGTAAATTTCTACTTGTTATAAACCAAGTCTTTCTGGTAGATACTTGGATTTCAATCATTATATGGCATCACATGGTTCTTCTCCGTTTATCTTTTATTGTTGAGGCTGGAAATTGTTGGGTTCAGGGACACAATTTGCCAAAAACTATAGCATCTCACTTCCAAGGCATATAGTATATTTTTGCGACTAAGTAATGATCTTCTAACCAAGAGTGAGGACTACGCTTATGAATTGTGTATTTATCTAAATACTGGAGGCTTCTACATGAAAAGTGGTTTGTGGATGGGGAAGAGAGAGAGAGAGAAGAATGAGTATATGGCAAAATGGTTGAAAAACAAATTTAGTTCATTGTTGGTTGGTTTCTGAAACCCCTTCCTCCTCTTTATCTTTCCATTCACTCTAGAGTTCTCTCTCAACCCCCCTTTTTTCCCAGTGGGGAGTGATAGATATGAACTTCAGGCCTTCTCTGGTAGAAAGGTTGCCATATGTGATGATCTCTTTGATGCTGCATTAGTCTGTTATCAGTTACCCCCCTCCCTCCCAAAGACATTTACTTGTCATCCTAACAGTCAAACTTCTATTTTCCAGGTTGCTGAAAGGGCTCTCTTCCTTTGGAATAATGACCAAATTGTCAATTTGATTGCACATAACCGGCACGTGATTCTCCCGATTATATTCCCAGCTGTGGAAAGCAATACTCAGAACCACTGGAATCATGCTGTGCAGAACTTGAGTCTAAATGTAAGAAGGATGTTCTCCGAAATGGATGATGTACTTTTCCTTGCTTGTCATTCTCATTACAAGGAAGAACAGGAGAAAATAGACTTGGAATCTGAAAAACGGAAGGAAGCATGGGAACAGCTGGAGACTGCAGCTAGTCTACGTCCACCTGTAGCTGGAAACATTGCTGTCCTGGTAACGCCTTTAGCAACTTCAATCACTTGCTAAGAGGTGATGACTCCACTCTATCCTTGTCCCCGTGTTTTTCTGTGTATGTTCCACGCAATCTAGGAATCATGGATGGAAAATGGCTGTTGTCTGGAGCAGGTTTTTGAAGATCAACCCGATTAACAGCCTTATCTCTGTTGTAACCTTAGTCCTGCAACTGTGTTGAGAGCGCGAATGGGGGGGGGGG</genome_strand>
        <mrna_strand>AAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATCGGTTGCTGCATCAATAGTTACCATTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAAGGGCTCTCTTCCTTTGGAATAATGACCAAATTGTCAATTTGATTGCACATAACCGGCACGTGATTCTCCCGATTATATTCCCAGCTGTGGAAAGCAATACTCAGAACCACTGGAATCATGCTGTGCAGAACTTGAGTCTAAATGTAAGAAGGATGTTCTCCGAAATGGATGATGTACTTTTCCTTGCTTGTCATTCTCATTACAAGGAAGAACAGGAGAAAATAGACTTGGAATCTGAAAAACGGAAGGAAGCATGGGAACAGCTGGAGACTGCAGCTAGTCTACGTCCACCTGTAGCTGGAAACATTGCTGTCCTGGTAACGCCTTTAGCAACTTCAATCACTTGCTAAGAGGTGATGACTCCACTCTATCCTTGTCCCCGTGTTTTTCTGTGTATGTTCCACGCAATCTAGGAATCATGGATGGAAAATGGCTGTTGTCTGGAGCAGGTTTTTGAAGATCAACCCGATTAACAGCCTTATCTCTGTTGTAACCTTAGTCCTGCAACTGTGTTGAGA-CGCNAATGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744780" ref_strand="+" ref_description="SGN-E744780 [GI|5420275]">
      <seq>tggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgtagaacggtgttgcgggcagctcatgagctgttaataatgcttagctcgtccctgattcaagagtacagtgacagttgctccttatttatataaagctctagaattgtggtggaagacaatgcagttgtagctctgacaattggcatatcaccacctgggtcaatgaggaattgcaactattggcaactggattcttctaatcttaaagttgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacacccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttccagtactgcttctcaacagcctaagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccgtacatgaattgcatcaatggaagcaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctcttttggtgaaaaagcctgagcttgaagatagaaaagagagtgtgattgaagaagcaaaaatggtaaaggttgaggaatcacaagaacactgttcacaagcacacttcaaggaccacccatttactcagccaagtgaatatatcaccgccgctcaaagtggtttagttgatcttatgcctgtgaataggagttcatgtaatgacattaccctccagactacaacaccaaaagatgaaagcaaggtttgcttgaaacaggaaggctccaattcgcttagtattgcagatatagattcaaaacacaaggatccactaatgtgtagtctgtatgctcctgatatatataacaatttgcaagccatggagcttgaccggcggccttcctttaattatatggaaaagcttcagcgggacattaacaagggtatgcgaagtattcttattgattggcttgtggaggtatctgaagaatataggctggttccggacactctttacctgactgtacatcttattgataggttcctttctgagcattacattgaaaaacaaaaactgcagctgcttggagttacctgcatgctaattgcttccaaatatgaagaaatttgtgcacctcgtgtggaagaattttgctttattacagacaacacttactcgaaagaagaggtagtaagaatggaaagtctggttctgaattttttgggctttcaacttgctgctccgaccaccaaaaagttcctgaggagattcgttcaggcatcacaagcttcttatgaggttccctctgttgaactggaattcatggcaaactatttagcagagttaacactagctgaatatagttttctcaagtttcttccatctgttactgctgcatcagctgtatttctagccagatggacacttgatcaatctaaccacccatggaattcaactttggagcactacactacatataaggcgtcagatctgaaaactacagttcttttgctgcaagatttacagatgaacaccagtggaagcactctgaatgccatccgtgaaaagtataaacaaccaaagttcaagtccgtggcaactttatcgtctccaaaaccagtccaatcactgttctaggaaatgctgattttaagtctcggtggccaatccatgtttggcagatccagtgtcactttttcaagcgaaggaacattaatctttaacatacaataattcatccttcctggaaagagacacattcttttcaaccctctttcgaattttaaccacatctatcatcctaccatggcccgtcagagtatacagaaagctgtagatttgaatgaagtggtagcactaagttaaaaagtaatggcaatatgtaagtaacttcacagcacctggttagcttcttgctatcatgtatatgaagctgtttgagagctcttcttgttaaaatggttccaaatttgacgtttctattcattaagcgcaataaatccttttccattctggacgagatacaaattgtttaagtctatcaagcttcgtagctttgcggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82717" stop="73507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82417" g_stop="82291" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="208" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="565" r_length="357" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78745" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="842" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78744" i_stop="77629" i_length="1116">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77628" g_stop="77495" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="976" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77494" i_stop="77217" i_length="278">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77216" g_stop="77124" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1069" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77123" i_stop="76280" i_length="844">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76279" g_stop="76146" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1203" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76145" i_stop="75821" i_length="325">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75820" g_stop="75745" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1204" r_stop="1279" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="75744" i_stop="75020" i_length="725">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="75019" g_stop="74943" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1280" r_stop="1356" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="74942" i_stop="74856" i_length="87">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="74855" g_stop="74822" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1357" r_stop="1390" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="74821" i_stop="74740" i_length="82">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="74739" g_stop="74590" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1391" r_stop="1540" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="74589" i_stop="74505" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="74504" g_stop="74370" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1541" r_stop="1675" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="74369" i_stop="74289" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="74288" g_stop="73814" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1676" r_stop="2149" r_length="474" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2154" polyA_stop="2172"/>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E744780" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>2146</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82417" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78745"/>
          <exon e_start="77628" e_stop="77495"/>
          <exon e_start="77216" e_stop="77124"/>
          <exon e_start="76279" e_stop="76146"/>
          <exon e_start="75820" e_stop="75745"/>
          <exon e_start="75019" e_stop="74943"/>
          <exon e_start="74855" e_stop="74822"/>
          <exon e_start="74739" e_stop="74590"/>
          <exon e_start="74504" e_stop="74370"/>
          <exon e_start="74288" e_stop="73814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAA-TGCAACTA-TGGCAACTGGA-TCTTCTAATCTTAAAG-TGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACTTCAAGGACCACCCATTTACTCAGCCAAGTGAATATATCACCGCCGCTCAAAGTGGTTTAGTTGATCTTATGCCTGTGAATAGGAGTTCATGTAATGACATTACCCTCCAGACTACAACACCAAAAGGTATGCTATTGTGTGCTATTATGCAAGATTTGAAAGCCTTGGAATTTGTTGATTTCATTCCCTCTCTTTAGACATAGTTTGAAGTGCAACTACCATGACTGAGCTATGTCTGCTCCTTCAAATTTCAAAAAATCTGTGGTAATTGCTGCCTGCTCATCAGGAGAGACCAGCAACCAAGATACTTGATAATCATAACATTCCTGAAAACTTAATATTTCTTAAGTGCTGTGCACGATGAAACTGTGAACTAGTTTTTATTTATATTCAACGCCTTTGAATTTGATCCTTTTATGAAATGCTCTATTCAAACCACGTATAATTCTTTGTGAGCGCGACAAGCATGTGTGTCCTTTACTGGCATATAGTTCTAGTTAAAATTTCAAAGTGCAAAGCTACTTATGGCCCTTTGTCCAACTCAGATATATCATTATTACAATAGGCATCCATTTGAATTCGATGTTATAATTCCAAGCACAACCTCTAGAATAGCAATTTACAACTTTTTTGCGGTTACTAAAGTTCTCTACTGTATATGCAGCAAGAAGAAAGTTTATAAAGACTTCATTCACTGCATTTTGCTCATTTTTTGTTTTGCATTCTAGTAAGTCTCAATTCAGAAAACTGTTTGAAGAAAAGCAGTGTAAAATTTCTATTTTTCATAAAACCTCAAAAGAGAGCTCTTGCTCACTGAAATGTGAAGTAACTGACTTGTAGAACCATCATAAGAAATGGTAACCCTCGAATAACTGGAAGTATAGAGACAATGTAATATATGCAACAGAAAGAGCGAAGAAACCAATTGAGTGCATAGTTCCTCATGGGTGATATGTCTTTGTGGTTCTACGGAGATGGTTATTTTATTTCTCCAATACAAAGGGCGTTTTTGTGTCCATTTTGCAAATGGATGGACTGAAAAACCTTTTCCCAAAAAGGTAAAAAGCCAAAACTGTTTGTAGGAGGAAATCTTATTTAATCTGTTTGATCTTCTGGCATTGCCTGCAAAATTTAATCATCATTTTAACATTGCATGAAAGCATTATTAGTTTTGAAAGGAAATCTTCCTATTGTCATGTTCTTTTCTAGAAGGTGCTTATTTGTTTCTCTTCCATCATGCAGATGAAAGCAAGGTTTGCTTGAAACAGGAAGGCTCCAATTCGCTTAGTATTGCAGATATAGATTCAAAACACAAGGATCCACTAATGTGTAGTCTGTATGCTCCTGATATATATAACAATTTGCAAGCCATGGAGGTTAGTATGACTAGTGCATTCCTAACTACTTAAAAAATTACTCATGCACTGTTGAATTGTTGATAAGTCTAGTGATAGCACTAGGCATCCAAAACCATCTAAACAATATCAAGTTTAATGTTGCCTTTAGTTGTTAATTAAACAAATAATATCATGGATAATTGCAATGAAATAGTTTAAATACTTCTGAACAAGTTTAAAAGTGCCCTTCCTTTTCTTTGTTAACATAAGACTTTATGTTTCTCAATTACTAAATGACAAATTCATCTCATCAACAGCTTGACCGGCGGCCTTCCTTTAATTATATGGAAAAGCTTCAGCGGGACATTAACAAGGGTATGCGAAGTATTCTTATTGATTGGCTTGTGGAGGTCAGTTTGCTTTTACTTGGATGTTTTAACGCTGCTTAATAATATGAGATATTATCTTAAAGAGTATGTTGTGGTTCTTTATAAACAAAATCTTCACATATAGACCTAAGTTGTGATAGTAGAAAACCTTTTTGTTGACTACCTTTTCTATGATCATTGGATGAACTGTTCCTTTTTTTGAAGGCATCACCAACTGAAACTTTTTGCTTCATATTCAAGCATTATTGTCTTGTTTAATTTTTATGGTTATCCTCCCTGGAAGATCACATATGTTTTTTCCTTGAAAGCATTTCATCAAATGTTAGTTCTAATGGGAAATTTCATATTTAGTCTACAGTCATGGTTTCTGTCTAAATGACCAAATGACACTTTAGCCTATTCATCTCTCCTTTTTCATTTTGGAATATCATAAGCAGATATTATGATACATTCATGATTTATATTTCTCTATTAAGAAAATAAGTCTGTTAACTATGATGAGAGGTGCAATACTTTAATGGTGTTATTCTCTTACCAATTATTATTCAGTATTTTATCCTGGGTAAAATAATTCTTAAGTTCCCTCATAAGTTATGCATGTAATATTTATGCAAGATATGAAAATAGAATGAAACATTCATCAGTAGTCGGGAACTTATTGCTTGAATTATTTTTGTTTAGTGGAAATCAAAAGAGCCTTTACATTTCCGCCATTGATTATGCATATTGATAATGGCACTGGCTTATGGAATTCAGACTTACTTTTGATAAGCTCTTTTCCTGCTTATGAAGTATTGGATATGCTTATCTTGCATGACGGTGAAAATTCTATCCGTTGACCATCATTTTGTTCTCTCCCTTGCAGGTATCTGAAGAATATAGGCTGGTTCCGGACACTCTTTACCTGACTGTACATCTTATTGATAGGTTCCTTTCTGAGCATTACATTGAAAAACAAAAACTGCAGCTGCTTGGAGTTACCTGCATGCTAATTGCTTCGTAAGTAAATCATTTTTGGATATTCATACTCAAGGATGTCAGGTTATAGGGTAGACTAAACAGTTTTTACATTTATAAACTTGTAGATCACAAAGATTTTCCTTTTTTTACCGTGGTAGCTTGTGGGAACTAGAGCCATTTAACTAACATTCCCCTTTTTAAAAATTTGTATGTGCATGTGCTATTCAACACGGTAATATACTTTGCCCAATTTTTAGAATTATTTGTAGTTTCAGTAAAGAGAAACTATATGTACTTCCATCTGCATCTTTTCATTGTAATTTTTCTGCAGTATGTGATCTTTTATTTTCTTTTTTGCTTGCAGCAAATATGAAGAAATTTGTGCACCTCGTGTGGAAGAATTTTGCTTTATTACAGACAACACTTACTCGAAAGAAGAGGTATGCTCATTCCAATGCTGATCTAGTCGTGATTTTCTTTTATGTGGAGAAAGAGGTACTTGGAGATATGTTATGTGATAAAGAGCAATTGAATAACTTTAGTTTCAATTAGTGTTAGAAGCATGATGAGTTGCTTTAGATTCTTTAAATTCATTTCTCCTGGTTGTATTTGTCGTTTGTACCCATCCTTGATGTTTGGTCACTCAATATTGAGCTCCCGTGCTATGTGATACTCTCTAGATGTCTAGTACTGGGCATTTAAGGAGTGTTAGAACCCACAGTGGTTGAGAGTAAAGGTTGTAGCTCTTATATGCTTTTCAACCATCCTCAGTTCATGAGCGAACTTTGAAGGTCAAGCCCAAGGTCTGTTATAACATTTTGTACCTTTATGCATTCAACTAGTCTTTCAGAATTTGTCCTTGTAAACTGATAACTGTATAAGACCCACACCTTGCATTCCTCTGCTAGTTCTTTTGACTGTTTTTGCTTGTCCTAGCTACATTACTTTACCCCCTTGTGTTTATCTTCTTAAAAGCGAAAATCTAGATTGCCTCATCTAGCTCTGAGCTTTCCTTTCTCTTTTATGATATCTTGGATGCATACTTTTTTCCTACTTGAGTAATGATCTGAACATTTCCCAAATGTTTTCCTTTGTCTTCTATATACGACTTGAAGTTCCCTGTGGATGTGAAAAGGCTAATTACTAATTGCATATCCATTGTCAGGTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGGGCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAGGTACCTGTAATTAGCAATATATGCAAATTTAATCATGTTACTTGTGAGAGTAGGCTCCTTATTTGTGCCATTGTCCTTTGTTTTTAGGAGATTCGTTCAAGCATCACAAGCTTCTTATGAGGTAGATGAGATATCATTCTTCTTTTGGTTTGGGTCCTAGAAAATGAAGCTTATATGACAAATTAAATTTCTCCAACCTACAGGTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGTTAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTGTATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGGGTATGCAACTTTTTTGCACCTTGATCCTGTCATCTTTTTTTGCAATTGAATGCAACCACAAAATAACTCCTGAAATGTCTTGCAGAATTCAACTTTGGAGCACTACACTACATATAAGGCGTCAGATCTGAAAACTACAGTTCTTTTGCTGCAAGATTTACAGATGAACACCAGTGGAAGCACTCTGAATGCCATCCGTGAAAAGTATAAACAACCAAAGGTAAGAAACTCTATCACAACCACATGTATCAGCTGTTTATCATTGCACTCTGTATACTGAAGCTTCCATTTGAATTGACAGTTCAAGTCCGTGGCAACTTTATCGTCTCCAAAACCAGTCCAATCACTGTTCTAGGAAATGCTGATTTTAAGTCTCGGTGGCCAATCCATGTTTGGCAGATCCAGTGTCACTTTTTCAAGCGAAGGAACATTAATCTTTAACATACAATAATTCATCCTTCCTGGAAAGAGACACATTCTTTTCAACCCTCTTTCGAATTTTAACCACATCTATCATCCTACCATGGCCCGTCAGATGATACAGAAAGCTGTAGATTTGAATGAAGTGGATGCACTAAGTTAAAAAGTAATGGCAATATGTAAGTAACTTCACAGCACCTGGTTAGCTTCTTGCTATCATGTATATGAAGCTGTTTGAGAGCTCTTCTTGTTAAAATGGTTCCAAATTTGACGTTTCTATTCATTAAGCGCAATAAATCCTTTTCCATTCTGGACGAGATACAAATTGTTTAAGTCTATCAAGCTTACATAACTTT</genome_strand>
        <mrna_strand>TGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATTGCAACTATTGGCAACTGGATTCTTCTAATCTTAAAGTTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACTTCAAGGACCACCCATTTACTCAGCCAAGTGAATATATCACCGCCGCTCAAAGTGGTTTAGTTGATCTTATGCCTGTGAATAGGAGTTCATGTAATGACATTACCCTCCAGACTACAACACCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAGCAAGGTTTGCTTGAAACAGGAAGGCTCCAATTCGCTTAGTATTGCAGATATAGATTCAAAACACAAGGATCCACTAATGTGTAGTCTGTATGCTCCTGATATATATAACAATTTGCAAGCCATGGAG......................................................................................................................................................................................................................................................................................CTTGACCGGCGGCCTTCCTTTAATTATATGGAAAAGCTTCAGCGGGACATTAACAAGGGTATGCGAAGTATTCTTATTGATTGGCTTGTGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGAAGAATATAGGCTGGTTCCGGACACTCTTTACCTGACTGTACATCTTATTGATAGGTTCCTTTCTGAGCATTACATTGAAAAACAAAAACTGCAGCTGCTTGGAGTTACCTGCATGCTAATTGCTTC.....................................................................................................................................................................................................................................................................................................................................CAAATATGAAGAAATTTGTGCACCTCGTGTGGAAGAATTTTGCTTTATTACAGACAACACTTACTCGAAAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGGGCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAG.......................................................................................GAGATTCGTTCAGGCATCACAAGCTTCTTATGAG..................................................................................GTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGTTAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTGTATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGG.....................................................................................AATTCAACTTTGGAGCACTACACTACATATAAGGCGTCAGATCTGAAAACTACAGTTCTTTTGCTGCAAGATTTACAGATGAACACCAGTGGAAGCACTCTGAATGCCATCCGTGAAAAGTATAAACAACCAAAG.................................................................................TTCAAGTCCGTGGCAACTTTATCGTCTCCAAAACCAGTCCAATCACTGTTCTAGGAAATGCTGATTTTAAGTCTCGGTGGCCAATCCATGTTTGGCAGATCCAGTGTCACTTTTTCAAGCGAAGGAACATTAATCTTTAACATACAATAATTCATCCTTCCTGGAAAGAGACACATTCTTTTCAACCCTCTTTCGAATTTTAACCACATCTATCATCCTACCATGGCCCGTCAGAGTATACAGAAAGCTGTAGATTTGAATGAAGTGGTAGCACTAAGTTAAAAAGTAATGGCAATATGTAAGTAACTTCACAGCACCTGGTTAGCTTCTTGCTATCATGTATATGAAGCTGTTTGAGAGCTCTTCTTGTTAAAATGGTTCCAAATTTGACGTTTCTATTCATTAAGCGCAATAAATCCTTTTCCATTCTGGACGAGATACAAATTGTTTAAGTCTATCAAGCTT-CGTAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313671" ref_strand="+" ref_description="SGN-E313671 [cTOA-12-H20]">
      <seq>tgagctttcctttctcttttatgatatcttggatgcatacttttttcctacttgagtaatgatctgaacatttcccaaatgttttcctttgtcttctatatacgacttgaagttccctgtggatgtgaaaaggctaattactaattgcatatccattgtcaggtagtaagaatggaaagtctggttctgaattttttgggctttcaacttgctgctccgaccaccaaaaagttcctgaggagattcgttcaagcatcacaagcttcttatgaggttccctctgttgaactggaattcatggcaaactatttagcagagttaacactagctgaatatagttttctcaagtttcttccatctgttactgctgcatcagctgtatttctagccagatggacacttgatcaatctaaccacccatggaattcaactttggagcactacactacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75481" stop="74176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75181" g_stop="74943" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74942" i_stop="74856" i_length="87">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74855" g_stop="74822" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="273" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74821" i_stop="74740" i_length="82">
            <donor d_prob="0.784" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74739" g_stop="74590" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="423" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74589" i_stop="74505" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74504" g_stop="74476" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="452" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E313671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75181" e_stop="74943"/>
          <exon e_start="74855" e_stop="74822"/>
          <exon e_start="74739" e_stop="74590"/>
          <exon e_start="74504" e_stop="74476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTTCCTTTCTCTTTTATGATATCTTGGATGCATACTTTTTTCCTACTTGAGTAATGATCTGAACATTTCCCAAATGTTTTCCTTTGTCTTCTATATACGACTTGAAGTTCCCTGTGGATGTGAAAAGGCTAATTACTAATTGCATATCCATTGTCAGGTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGGGCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAGGTACCTGTAATTAGCAATATATGCAAATTTAATCATGTTACTTGTGAGAGTAGGCTCCTTATTTGTGCCATTGTCCTTTGTTTTTAGGAGATTCGTTCAAGCATCACAAGCTTCTTATGAGGTAGATGAGATATCATTCTTCTTTTGGTTTGGGTCCTAGAAAATGAAGCTTATATGACAAATTAAATTTCTCCAACCTACAGGTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGTTAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTGTATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGGGTATGCAACTTTTTTGCACCTTGATCCTGTCATCTTTTTTTGCAATTGAATGCAACCACAAAATAACTCCTGAAATGTCTTGCAGAATTCAACTTTGGAGCACTACACTACATA</genome_strand>
        <mrna_strand>TGAGCTTTCCTTTCTCTTTTATGATATCTTGGATGCATACTTTTTTCCTACTTGAGTAATGATCTGAACATTTCCCAAATGTTTTCCTTTGTCTTCTATATACGACTTGAAGTTCCCTGTGGATGTGAAAAGGCTAATTACTAATTGCATATCCATTGTCAGGTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGGGCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAG.......................................................................................GAGATTCGTTCAAGCATCACAAGCTTCTTATGAG..................................................................................GTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGTTAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTGTATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGG.....................................................................................AATTCAACTTTGGAGCACTACACTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487673" ref_strand="+" ref_description="SGN-E487673 [cSTE-26-C14]">
      <seq>cgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttatataaagctctagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctagatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaagatccaaaagaccagccccagatgagaacaaaccaactaattcttctagtactgcttctcaacagcctaagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaagcaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctattttggtgaaaaagcctgagcttgaagatagaaaagagagtatgattgaagaagcaagaaaagtaaaggtcgaggaatcacaagaacactgttcacaagcacacttcatggaccacccattaactcagccaagtgaatatatcaccgcccgctcagagtggtttagctgatcttatgcctgtggataggagttcatgttatggcattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82639" stop="78466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82339" g_stop="82291" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="130" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="483" r_length="353" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78766" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="740" r_length="257" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E487673" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82339" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACTTCAAGGACCACCCATTTACTCAGCCAAGTGAATATATCACCG-CCGCTCAAAGTGGTTTAGTTGATCTTATGCCTGTGAATAGGAGTTCATGTAATGACATTACCC</genome_strand>
        <mrna_strand>CGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTAGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAGATCCAAAAGACCAGCCCCAGATGAGAACAAACCAACTAATTCTTCTAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAGCAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTATTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTATGATTGAAGAAGCAAGAAAAGTAAAGGTCGAGGAATCACAAGAACACTGTTCACAAGCACACTTCATGGACCACCCATTAACTCAGCCAAGTGAATATATCACCGCCCGCTCAGAGTGGTTTAGCTGATCTTATGCCTGTGGATAGGAGTTCATGTTATGGCATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604028" ref_strand="+" ref_description="SGN-E604028 [67218]">
      <seq>cccccacccacccctctggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttatataaagctctagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctagatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaagatccaaaagaccagccccagatgagaacaaaccaactaattcttctagtactgcttctcaacagcctaagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaagcaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctattttggtgaaaaagcctgagcttgaagatagaaaagagagtatgattgaagaagcaagaaaagtaaaggtcgaggaatcacaagaacactgttcacaagcacacttcatggacccaccattaactcaggcaagtgaatatatcaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82734" stop="78529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82434" g_stop="82291" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="224" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="577" r_length="353" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78828" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="771" r_length="194" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E604028" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82434" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACTTCAAGGACCACCCATTTACTCAGCCAAGTGAATATATCACCGC</genome_strand>
        <mrna_strand>CCCCCACCCACCCC-TCTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTAGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAGATCCAAAAGACCAGCCCCAGATGAGAACAAACCAACTAATTCTTCTAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAGCAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTATTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTATGATTGAAGAAGCAAGAAAAGTAAAGGTCGAGGAATCACAAGAACACTGTTCACAAGCACACTTCATGGACCCACCATTAACTCAGGCAAGTGAATATATCACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455330" ref_strand="+" ref_description="SGN-E455330 [cSTS-26-A17]">
      <seq>cccccacccacccctctggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttctataaagctcaagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctggatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttctagtactgcttctcaacagcataagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaaacaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctattttggtgaaaaagcctgagcttgaagatagaaaagagagtatgattgaagaagcaagaaaaagtaaggtcgaggaatcacaagaacactgttcacaagcacccttcaaggaccacccattaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82734" stop="78550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82434" g_stop="82291" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="224" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="577" r_length="353" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78850" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="749" r_length="172" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E455330" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82434" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACTTCAAGGACCACCCATTTACTC</genome_strand>
        <mrna_strand>CCCCCACCCACCCC-TCTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTCTATAAAGCTCAAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCTAGTACTGCTTCTCAACAGCATAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAACAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTATTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTATGATTGAAGAAGCAAGAAAAAGTAAGGTCGAGGAATCACAAGAACACTGTTCACAAGCACCCTTCAAGGACCACCCATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450417" ref_strand="+" ref_description="SGN-E450417 [cSTS-9-E14]">
      <seq>ccacccctctggaacccacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttatataaagctctagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctagatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaagatccaaaagaccagccccagatgagaacaaaccaactaattcttctagtactgcttctcaacagcctaagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaagcaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctattttggtgaaaaagcctgagcttgaagatagaaaagagagtatgattgaagaaagcagaaaagtaaaggtcgaggaatcacaagaacactgttcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82727" stop="78577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82427" g_stop="82291" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="216" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="569" r_length="353" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78877" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="714" r_length="145" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E450417" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82427" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAG</genome_strand>
        <mrna_strand>CCACCCC-TCTGGAACC-CACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTAGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAGATCCAAAAGACCAGCCCCAGATGAGAACAAACCAACTAATTCTTCTAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAGCAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTATTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTATGATTGAAGAAAGCAGAAAAGTAAAGGTCGAGGAATCACAAGAACACTGTTCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441778" ref_strand="+" ref_description="SGN-E441778 [cSTA-31-E20]">
      <seq>ccacccacccctctggaacccacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttctataaagctcaagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctggatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttctagtactgcttctcaacagcataagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaaacaaatttcaggttaagaaattctctgataagaagaattcaaaggtgacacctgctattttggtgaaaaagcctgagctttgagatagaaaagagagtatgattgaagaagcangaaaagtaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82731" stop="78606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82431" g_stop="82291" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="220" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="573" r_length="353" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78906" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="689" r_length="116" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E441778" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82431" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGT</genome_strand>
        <mrna_strand>CCACCCACCCC-TCTGGAACC-CACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTCTATAAAGCTCAAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCTAGTACTGCTTCTCAACAGCATAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAACAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAAGAATTCAAAGGTGACACCTGCTATTTTGGTGAAAAAGCCTGAGCTTTGAGATAGAAAAGAGAGTATGATTGAAGAAGCANGAAAAGTAAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314602" ref_strand="+" ref_description="SGN-E314602 [cTOA-20-O10]">
      <seq>acccctctggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgtagaacggtgttgcgggcagctcatgagctgttaataatgcttagctcgtccctgattcaagagtacagtgacagttgctccttatttatataaagctctagaattgtggtggaagacaatgcagttgtagctctgacaattggcatatcaccacctgggtcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacacccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttccagtactgcttctcaacagcctaagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccgtacatgaattgcatcaatggaagcaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctcttttggtgaaaaagctgagcttgaagatagaaaagagagtgtgattgaagaagcaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82725" stop="78614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82425" g_stop="82291" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="215" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="568" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="675" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E314602" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82425" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATG</genome_strand>
        <mrna_strand>ACCCC-TCTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAG-CTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425769" ref_strand="+" ref_description="SGN-E425769 [STM-45-F13]">
      <seq>cccccacccacccctctggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttctataaagctcaagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctggatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttctagtactgcttctcaacagcataagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaaacaaatttcaggttaagaaattctctgataagaggaattcaaaggtgacacctgctattttggtgaaaaagcctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82734" stop="78654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82434" g_stop="82291" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="224" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="577" r_length="353" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="78954" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="645" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E425769" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82434" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="78954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCT</genome_strand>
        <mrna_strand>CCCCCACCCACCCC-TCTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTCTATAAAGCTCAAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCTAGTACTGCTTCTCAACAGCATAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAACAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTATTTTGGTGAAAAAGCCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477421" ref_strand="+" ref_description="SGN-E477421 [cSTB-48-K19]">
      <seq>cccacccacccctctggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagcttgtccctgattcaagagtacggtgacagctgctccttatttctataaagctctagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctggatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttctagtactgcttctcaacagcataagcgaagggctgttctcagggatgtcactaatgtgctttgtgaaaatccatacatgaattgcatcaatggaaacaaatttcaggttaagaaattctctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82732" stop="78703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82432" g_stop="82291" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="222" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79211" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="575" r_length="353" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79021" g_stop="79003" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="594" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E477421" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82432" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79211"/>
          <exon e_start="79021" e_stop="79003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAGGTGAGCTTCAATGGATGTGTTATATCATATTTGCTCTTTGGAAATGAAATCATTCTGCTAAACATAATTATTGGTTATTGAACTAATGTCTTTGTTTCAAAAGATGGAGATTCAGTGCTAAATCTTTTTCTTTGTTTCAAAAACTTATCAACTTCTGGCCAATGATGTCAACTTGTCCTATGGTGATAGGTTAAGAAATTCTCTGATA</genome_strand>
        <mrna_strand>CCCACCCACCCC-TCTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTCCCTGATTCAAGAGTACGGTGACAGCTGCTCCTTATTTCTATAAAGCTCTAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCTAGTACTGCTTCTCAACAGCATAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCATACATGAATTGCATCAATGGAAACAAATTTCAG.............................................................................................................................................................................................GTTAAGAAATTCTCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441779" ref_strand="+" ref_description="SGN-E441779 [cSTA-31-E20]">
      <seq>ccacccacccctctggaaccacacagacgagctacattgattgtatgaccgatcggagaaggtagaaaccctagctctgcaatcgaggcaccgccgttcaacggtgttgcaggcagctcatgagctgtgaataatgcatagctcgtccctgattcaagagtacagtgacagttgctccttatttctataaagctcaagaattgtggtggaacacaatgcagttgtagctctgacaattggcatatcaccacctggatcaatgaggaatgcaactatggcaactggatcttctaatcttaaagtgcctactatgcgaatcacaagagcacgggcaaaaaccttgggttcatcaggaggactaccacctctacatccatctgtcagacaggataagaaacagggacttgtaacacaaggaacaaaatccaaaagaccagccccagatgagaacaaaccagctaattcttctagtactgcttctcaacagcataagcgaagggctgttcttagggatgtcactaatgtgcctttgtgaaaaatcctacatgaattgcatcaatggaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82731" stop="78918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82431" g_stop="82291" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81130" g_stop="81050" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="221" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486">
            <donor d_prob="0.926" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79563" g_stop="79218" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="568" r_length="347" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E441779" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82431" e_stop="82291"/>
          <exon e_start="81130" e_stop="81050"/>
          <exon e_start="79563" e_stop="79218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTAGTAAGCTCAGCTTAGACCTATACATACATGTTTGATATGTACTTGTTTATGTGTACATATCGATATGGATATTGTATTAGCTGCAATGTATCACAGCCTTGTAGGTTTTTCTAGATGAATAAGGGATTTATTTTGAAATTTTGAAAAATTTTAGCTCTATTTTGAGTAATCCTTGAGGATTTGCTTATGGATCTGTGAGCTTAGAGTTTTTCTTCCATTTTTCCTTAATTTCTGGAATCCTGATTTGCTTAATTTCTATTGTTGTTGTTGCTGGTTGTATTTTTTTGAGTTTTTTTTATGGTTCATTGTTGTTGGATTTTGAGGTTCTTTGATTTTCATTTTCTGGTTACTTATGAAAAAATTGATTTGGATTATTTATTTTCAATTTCTATTTTTGTTCTTAGTTGTTGTCTTTACTTTTTTTCTTAAATTTTTTTTTTAGTGCATTTTGGTTGAATTTTGAGGTCGGAAAGCTTTTTTTAAATTATTTTTTTCTAGTTTCTTTTGAGAAAAGAAATTATTTGGTTTTGTTAATTGCCATTTTCAGTTTCTTATACTTAGTTGTGATTAAGCAAATTAAATTTTGATGTGTTTTGGTTGATTCTTTGAGTTCTAAAGCTATTTAGTTTTATTTTTCCAGATTGGTTTTGAAAAAAATAATTTGAATTAATACTTTTGCTTTGCGTGTGGATTTACAAGTTAGGAGGAAATTGATTTTACAATGGACTTGAACTCCAATTGAAGAACAATTGATGGATCTATCATGCTATTCTCAGAAATTTTAGTGTAGTTTTTTATTTTTAAGGCTTTGTTTTTGTGGATTTGTAGAAGATCTTCAGCTAGATCAAACTGAGAAATTTTAAAGAATTCCTACAATTTTTCAGTAGTTAAATTGTATAACATTGACCGAGATGACTGATATCTTTTGATTTATGGATTAAAGTTCTTTAAATCGTCTATCATATACTGTATCTACCTTTGAATATATTGGTGCTAAACTTTGAAATTGAATTGTATACATGACTTAATTTGAAGCAACAACGTATGAGTAGATGCTTTTTTTTTTGCATTCGTAGAACTCTCCATGCAAATGGTATGTGCTATCTTTCCCTTTTACACCTTAAAGCTTAAGTAAGTAAATCAATGAATGTTTGATGCAGGCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAGGTGAATATCACTATTCAAAATATAGACTTATGTCCTACATATGATGTCATTTTTTTGGGTTGATACAAGCCAGTTAAGAACACACTACAAACTCACAGCAAAATATGGGAACACAAAAATCATATGGTCTTGGCAGTTTGTTGTGGGATAGAGCCTTAGATAAGATCTCATCAAATGTTAGATGTGAACATAAATATATCTTTGTTATCAAATTTGTAACACTTTTTTGTCATTGCTTCTCTCCACACAATTTCTTTCTGCTTTGAATTAGAATAATATGATTGTATCCATTTTTGTTTATTGACCCTTGGTTGATCAAATAAGTCAAACAGTCTCTTGTGCCTGCTGCATTTGAAGATACATATTTGTGTTTCAGCTCGTTCACAGGCTTGAAACTCTTTATTTCTAGTCTACTTCAGTAGATTGCTAGTGGATGCTGGTGGTTCTCTGATATTTAAGACCCTCTTTCATGGAAGAGTTTGAAATGTATAAAGATGATCTCTGTAAATAAAAGTGTGTCCTTGTCTGCTAGAGGTAGTCATGGGAAAATCTACAAAAGAAATAAACAAAGACAGCACAATGAGAAAATATAATGACCACAGCTGAGGAAAAGAAGAAAACTAAGTGTGATCGACTTTTTCAATTGTAGTTTATTACATTATTTTGTTCTTTGGTACGATTGACTTTCATAATATAAGTTAACATAAACTCCTAATCTTCCAACTTGTTCTCTACTTCTTCTCTTTGCTATTTCAGTTTATTCATAAGTGAATGTTATAATTGAAATAATATTATGACTTAAAGATTGCATCAATAGTGTTGGTTATGCTCACTTCTGTTTGTTGAAGTTACTTTCTGCTTAGAAATTAGTAGCTTAAACAGGCATAACTTGCGTGTATTTAACTGACTAAGAAGGCTCCAAGTTCAAGTCACTATACCAGTTAATAATAGTTGCTTGATTTGTGATCTTCCTAAATCTCATTAGTTCACCTGATGGCATGTCAGAGTCCAATCAGGCACTAGTTATCTTCTTACACTGGTACCTGGACACATATATTTGCCGAAACTTCAACGTTCTAAACTTTCTGGGGAATAATGTCATTAAGGCCCTAAAGCTTTGTCTATGTAATTTGTGTGTCTTTTTTTTTTTTTTTTTTAATAATTTTGTTTTCTTGTATTGCATATACATCCTTTAATTTTTATCTTCATCAGGCCCTTTACTAGAACTTTTTTTGGATGTGTGTTGTGCTTAAAGCCCAACCTTTGAATCTTCCTCTGCCTTTGACAACACTGCTGAAGAATGATGTTTGTGCTGTTTCATCAAGTTCTTGGATCCTGCATATTGAGACTTATTTGAAAGTTCCCTACTCTTTGGTCCATGTTGAGCATCTGTTTTTGCGGAGTCTTTTTTTAAAAACTCTTTTCTGGGGGTCATTCTTACCTTTGACTATGAAAAGTTAAAGATGATGCAATGTTGTCTCTGCAGTTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTG-CTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAA</genome_strand>
        <mrna_strand>CCACCCACCCC-TCTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTTCAACGGTGTTGCAGGCAGCTCATGAGCTGTGAATAATGCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTCTATAAAGCTCAAGAATTGTGGTGGAACACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGCTCTGACAATTGGCATATCACCACCTGGATCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACATCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCTAGTACTGCTTCTCAACAGCATAAGCGAAGGGCTGTTCTTAGGGATGTCACTAATGTGCCTTTGTGAAAAATCCTACATGAATTGCATCAATGGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472295" ref_strand="+" ref_description="SGN-E472295 [cSTB-28-A20]">
      <seq>ggccagtgttagctgtacatgggtttatgatgtttctggcttggggaatattgctgccaggtggtattttagctgctagatatttgaaacatatcaagggagatgggtggtttcagattcatgtttatctacagtattctggattatcgatcgtcttccttggctttctctttgctgtagccgaacttcgcggtttgagtttcagctcccttcatgttaagtttggaatgctggccatagttcttgctattgcacagcctatcaatgcatacctacgacctaagaaacctggagcaggggaggaggtttcttcaaaaaggcgtgtttgggagtatatccatgtcattgtgggcaggggtgccattgttgttgggattgcagctcttataactggaatgaagcatttaggagagaggtatggtgacgaagatgttcataggctgatgtgggctttaattctgtggattcttgttggcgttttgacagtgatatatctggagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84512" stop="83409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84212" g_stop="83709" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E472295" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84212" e_stop="83709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGTGTTAGCTGTACACGGGTTTATGATGTTTCTGGCTTGGGGAATATTGCTGCCAGGTGGTATTTTAGCTGCTAGATATTTGAAACATATCAAGGGAGATGGGTGGTTTCAGATTCATGTTTATCTACAGTATTCCGGATTATCGATTGTCTTCCTTGGTTTTCTCTTTGCTGTAGCCGAACTTCGCGGTTTGAGTTTCAGCTCCCTTCATGTTAAGTTTGGAATGCTGGCCATAGTTCTTGCTATTGCACAACCCATTAATGCATACCTACGACCTAAGAAACCTGGAGCAGGAGAGGAGGTTTCTTCAAACCGGCGTGTTTGGGAGTATATCCATGTCATTGTGGGCAGGGGTGCCATTGTTGTCGGCATTGCAGCTCTTATAACAGGAATGAAGCATCTAGGAGAGAGGTACGGTGATGAAGATGTTCATAGGCTGATGTGGGCTCTAATTCTGTGGATTCTTGTTGGCGTTTTGACAGTGATGTATCTGGAGTATC</genome_strand>
        <mrna_strand>GGCCAGTGTTAGCTGTACATGGGTTTATGATGTTTCTGGCTTGGGGAATATTGCTGCCAGGTGGTATTTTAGCTGCTAGATATTTGAAACATATCAAGGGAGATGGGTGGTTTCAGATTCATGTTTATCTACAGTATTCTGGATTATCGATCGTCTTCCTTGGCTTTCTCTTTGCTGTAGCCGAACTTCGCGGTTTGAGTTTCAGCTCCCTTCATGTTAAGTTTGGAATGCTGGCCATAGTTCTTGCTATTGCACAGCCTATCAATGCATACCTACGACCTAAGAAACCTGGAGCAGGGGAGGAGGTTTCTTCAAAAAGGCGTGTTTGGGAGTATATCCATGTCATTGTGGGCAGGGGTGCCATTGTTGTTGGGATTGCAGCTCTTATAACTGGAATGAAGCATTTAGGAGAGAGGTATGGTGACGAAGATGTTCATAGGCTGATGTGGGCTTTAATTCTGTGGATTCTTGTTGGCGTTTTGACAGTGATATATCTGGAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706298" ref_strand="+" ref_description="SGN-E706298 [FA29CC09]">
      <seq>cattgaagtccatggatactaagtatgatttgcaattgaatcaaaatgctacaatgagagtgatatgggctttaggtttgataaaacctccggatagtcttcggcctttttatctcccacaaaatcatggtggtagctatgggcacttgacactgaatgtctcggaacatattgatgattgcttggggccgctggatgcagaagataaacaagatcaagaccttgtcattgcagataaaaaaggaccacttgttgtttcaacaggtccagctgtgttctacccaaatcctccaaacccttctaaagttctctacattaacaagaaagaggcaccccttctcagggtagagaggggtgttcaagtaaagttttcaattcaggctgggcatgatgttgccttctatataacctcagatccacttggtggaaatgctacattgaggaatatgtcagagaccatctactttgggggacctgaagcacaaggagttcaagccactcccacagaattagtttgggctcctgaccggaacacgccagatttagtttactatcagtctctatatgctcagaaaatggggtggaaagttcaagtggttgatgcaggcttacctgatatgtataacagcagcgtagttctggatgatcagcaggttacttcttttggacgttggctgaaaattcaatctccattgcagctcgaggggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0046G10-ALLBW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0046G10.2" temp_strand="-" temp_description="C06HBa0046G10.2  AC211030.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0046G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85637" stop="84324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85337" g_stop="84624" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0046G10.2" gen_strand="-" ref_id="SGN-E706298" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0046G10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85337" e_stop="84624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</genome_strand>
        <mrna_strand>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTAC-TTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>55</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14240" PGL_stop="13616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14240" e_stop="13616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="14240" e_stop="13616" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14240" stop="13616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTATCCTACTATTTTATCAGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTCTAAATATAAAAAAATAGATAAATTTAAAGTTGCAATTGAAGGTATGATTGAAAAATTAAAAAAATATTTTTTTCTTATTCCTCAAATTTATTTAACTGCTACTTTACTTTCATCCTGATTATAAATTACGAGGTGTGCAGGGCCTTATTGACACTTTTTGTGAAACTTAAGAAATTTTACCTAAAGAAATTCCAAATTGTGAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAAATTTTGTATAAAAAATATAGAACTAGTGAAAATATTGAAGGAGAAGTTGGTCAAACTTCTAATCAAGATATTGATTTTGAAGTTCGAATTTCAACTTATATGAGAGGTTTTCTTTGTCTTAATTCTACTAACCGTGATGATTTAGAAGAATATATTAATCAATCTTTAGAAGTATTTGAAATCAAAGATGGCAATGAAGATTTATTAGGATGTGTAGTAGGCGAACCGTTGCATTTCCAACTTTGAGCAAAATGATTTGTGATGTTCTAGTTATTCAAGCTTCATCAGTTGCATTGGATGCTGCTTTCAGTGCGGCAAGGTTTCAAATTG</gDNA_template>
            <first_frame> Y  Y  P  T  I  L  S  V  L  I  N  I  C  A  L  T  I  Q  F  S  K  Y  K  K  I  D  K  F  K  V  A  I  E  G  M  I  E  K  L  K  K  Y  F  F  L  I  P  Q  I  Y  L  T  A  T  L  L  S  S  *  L  *  I  T  R  C  A  G  P  Y  *  H  F  L  *  N  L  R  N  F  T  *  R  N  S  K  L  *  N  V  *  V  *  H  K  S  R  S  K  N  F  V  *  K  I  *  N  *  *  K  Y  *  R  R  S  W  S  N  F  *  S  R  Y  *  F  *  S  S  N  F  N  L  Y  E  R  F  S  L  S  *  F  Y  *  P  *  *  F  R  R  I  Y  *  S  I  F  R  S  I  *  N  Q  R  W  Q  *  R  F  I  R  M  C  S  R  R  T  V  A  F  P  T  L  S  K  M  I  C  D  V  L  V  I  Q  A  S  S  V  A  L  D  A  A  F  S  A  A  R  F  Q  I  </first_frame>
            <second_frame>  I  I  L  L  F  Y  Q  Y  *  *  I  F  V  L  L  Q  F  N  F  L  N  I  K  K  *  I  N  L  K  L  Q  L  K  V  *  L  K  N  *  K  N  I  F  F  L  F  L  K  F  I  *  L  L  L  Y  F  H  P  D  Y  K  L  R  G  V  Q  G  L  I  D  T  F  C  E  T  *  E  I  L  P  K  E  I  P  N  C  E  T  C  K  S  S  I  K  V  E  A  K  I  L  Y  K  K  Y  R  T  S  E  N  I  E  G  E  V  G  Q  T  S  N  Q  D  I  D  F  E  V  R  I  S  T  Y  M  R  G  F  L  C  L  N  S  T  N  R  D  D  L  E  E  Y  I  N  Q  S  L  E  V  F  E  I  K  D  G  N  E  D  L  L  G  C  V  V  G  E  P  L  H  F  Q  L  *  A  K  *  F  V  M  F  *  L  F  K  L  H  Q  L  H  W  M  L  L  S  V  R  Q  G  F  K  L </second_frame>
            <third_frame>   L  S  Y  Y  F  I  S  I  N  K  Y  L  C  S  Y  N  S  I  F  *  I  *  K  N  R  *  I  *  S  C  N  *  R  Y  D  *  K  I  K  K  I  F  F  S  Y  S  S  N  L  F  N  C  Y  F  T  F  I  L  I  I  N  Y  E  V  C  R  A  L  L  T  L  F  V  K  L  K  K  F  Y  L  K  K  F  Q  I  V  K  R  V  S  L  A  *  K  *  K  Q  K  F  C  I  K  N  I  E  L  V  K  I  L  K  E  K  L  V  K  L  L  I  K  I  L  I  L  K  F  E  F  Q  L  I  *  E  V  F  F  V  L  I  L  L  T  V  M  I  *  K  N  I  L  I  N  L  *  K  Y  L  K  S  K  M  A  M  K  I  Y  *  D  V  *  *  A  N  R  C  I  S  N  F  E  Q  N  D  L  *  C  S  S  Y  S  S  F  I  S  C  I  G  C  C  F  Q  C  G  K  V  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14011" stop="13700"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILPKEIPNCETCKSSIKVEAKILYKKYRTSENIEGEVGQTSNQDIDFEVRISTYMRGFLCLNSTNRDDLEEYINQSLEVFEIKDGNEDLLGCVVGEPLHFQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15472" PGL_stop="14670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15472" e_stop="14670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="15472" e_stop="14670" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15472" stop="14832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15472" stop="14886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15471" stop="15199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15471" stop="15209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15446" stop="14670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGACGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGGTTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTTCAACTCATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATATTAAGTTATACACTATGTGTAGAGAAAAAACTGGTGCATACTTAGCTTCAAAAATTTTAAGTGTTTTAGATTATTACATGGTTACAGATAAAGTAATGTCTGTTGCATTAGATAATGCATCTAACAATACAAACGCTTC</gDNA_template>
            <first_frame> L  S  Q  G  R  R  *  S  I  N  A  L  K  L  I  L  C  G  N  L  *  L  S  I  K  K  I  V  L  L  F  C  N  K  C  K  Q  P  F  K  H  K  Q  G  G  G  Q  G  G  T  G  D  *  I  D  I  C  Y  L  V  C  R  F  N  I  K  K  L  K  H  *  P  I  E  K  K  E  F  Q  L  M  N  L  I  L  P  V  V  H  R  *  G  L  L  T  *  F  K  E  H  *  I  F  L  A  P  V  V  Q  *  H  N  V  N  I  I  R  N  L  I  A  K  I  *  L  K  W  F  L  F  V  V  C  L  I  V  L  L  H  I  P  I  L  L  N  K  F  N  K  L  I  I  R  I  I  E  V  F  K  K  Y  C  *  T  *  C  F  *  I  S  R  *  T  L  L  I  S  S  L  Y  I  *  H  I  I  *  *  S  V  Y  N  Y  G  Y  G  S  *  C  Q  W  K  *  L  F  N  C  F  N  S  L  D  *  S  *  L  E  F  A  K  K  N  I  K  L  Y  T  M  C  R  E  K  T  G  A  Y  L  A  S  K  I  L  S  V  L  D  Y  Y  M  V  T  D  K  V  M  S  V  A  L  D  N  A  S  N  N  T  N  A   </first_frame>
            <second_frame>  S  H  K  G  E  G  E  V  S  T  P  *  N  L  Y  C  V  A  I  Y  D  F  R  *  R  K  *  C  C  Y  F  V  I  S  V  S  N  L  L  N  I  N  K  V  G  V  K  V  G  R  G  I  K  *  T  F  V  I  L  C  A  D  S  I  *  R  S  *  S  I  S  Q  *  K  K  R  N  F  N  *  *  I  *  Y  Y  R  *  C  I  G  R  G  F  S  H  S  S  R  N  I  R  S  F  *  P  R  W  S  N  N  T  T  *  I  *  *  G  I  *  S  R  K  F  S  *  N  G  F  C  L  *  F  A  L  *  F  Y  F  I  S  R  F  Y  *  I  N  L  T  N  L  *  S  E  L  *  R  F  S  R  N  T  V  K  H  D  V  F  E  F  Q  G  K  H  C  *  F  L  R  C  I  F  S  I  L  Y  S  R  V  S  I  T  T  D  M  G  R  S  V  N  G  N  D  Y  L  T  V  S  T  H  W  I  D  H  N  W  N  L  Q  K  R  I  L  S  Y  T  L  C  V  E  K  K  L  V  H  T  *  L  Q  K  F  *  V  F  *  I  I  T  W  L  Q  I  K  *  C  L  L  H  *  I  M  H  L  T  I  Q  T  L  </second_frame>
            <third_frame>   L  T  R  E  K  V  K  Y  Q  R  P  K  T  Y  I  V  W  Q  F  M  T  F  D  K  E  N  S  V  A  I  L  *  *  V  *  A  T  F  *  T  *  T  R  W  G  S  R  W  D  G  G  L  N  R  H  L  L  S  C  V  P  I  Q  Y  K  E  A  K  A  L  A  N  R  K  K  G  I  S  I  D  E  F  D  I  T  G  S  A  S  V  G  A  S  H  I  V  Q  G  T  L  D  L  S  S  P  G  G  P  I  T  Q  R  K  Y  N  K  E  F  D  R  E  N  L  A  K  M  V  S  V  C  S  L  P  Y  S  F  T  S  Y  P  D  F  I  E  *  I  *  Q  T  Y  N  P  N  Y  R  G  F  Q  E  I  L  L  N  M  M  F  L  N  F  K  V  N  I  V  N  F  F  V  V  Y  L  A  Y  Y  I  V  E  C  L  *  L  R  I  W  V  V  V  S  M  E  M  I  I  *  L  F  Q  L  I  G  L  I  I  I  G  I  C  K  K  E  Y  *  V  I  H  Y  V  *  R  K  N  W  C  I  L  S  F  K  N  F  K  C  F  R  L  L  H  G  Y  R  *  S  N  V  C  C  I  R  *  C  I  *  Q  Y  K  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15347" stop="15036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRWGSRWDGGLNRHLLSCVPIQYKEAKALANRKKGISIDEFDITGSASVGASHIVQGTLDLSSPGGPITQRKYNKEFDRENLAKMVSVCSLPYSFTSYPDFIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23955" PGL_stop="29574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23955" e_stop="24235"/>
            <exon e_start="27593" e_stop="27796"/>
            <exon e_start="27870" e_stop="28051"/>
            <exon e_start="29151" e_stop="29277"/>
            <exon e_start="29377" e_stop="29574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.984"/>
          <exon-intron don_prob="0.916" acc_prob="0.997" e_score="0.953"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23955" e_stop="24235" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.863">
            <gDNA_intron_boundary i_start="24236" i_stop="27592" i_length="3357"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27593" e_stop="27796" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="27797" i_stop="27869" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="27870" e_stop="28051" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28052" i_stop="29150" i_length="1099"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="29151" e_stop="29277" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.916" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29278" i_stop="29376" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="0.949">
            <gDNA_exon_boundary e_start="29377" e_stop="29574" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23955" stop="24235"/>
              <exon start="27593" stop="27796"/>
              <exon start="27870" stop="27983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23977" stop="24235"/>
              <exon start="27593" stop="27796"/>
              <exon start="27870" stop="28051"/>
              <exon start="29151" stop="29193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27634" stop="27796"/>
              <exon start="27870" stop="28051"/>
              <exon start="29151" stop="29277"/>
              <exon start="29377" stop="29574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC : CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG : GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG : AGAGGATCACTCTGAAAATGTTTTTTCATCCATGGCAACAATCATGACTCTTGTGCTGGAAGAGAGCGAAGAAGTGTCGTTGGAATTGCTTACCCCTCTATTGGCTAGTGTTAAAAAGGACAATGCG : GAGGTCACACCAGTGGCTAAAAGGTTGGGAGAGACAGTATTTGCAAACTGTGCTGCAAAGCTTAAGCCTTACTTGCCTCAAGCAGTAGAATCATTGCAAATCTCCTTAAATGAGTACAATAAGATTGTTACTTCAGTCTTGGAAGGGACTCTTCCAGCTGTTGATGGTATTAATGACGGTGCTCCTAAGGACGAATTG</gDNA_template>
            <first_frame> K  S  S  L  V  L  L  G  F  H  K  I  S  F  A  S  A  K  H  E  R  I  A  I  S  R  V  T  I  C  V  C  S  G  V  *  W  S  E  E  *  F  E  G  I  N  L  D  F  F  W  K  I  L  K  R  E  R  K  R  W  R  L  L  T  K  S  L  K  S  R  L  L  L  L  G  T  S  *  L  S  L  L  L  H  L  K  N  S  S  V  C  L  T :   K  *  S  L  P  C  L  K  W  S  S  H  Q  R  N  Q  C  M  M  H  F  L  H  *  *  R  H  W  L  Q  M  I  S  *  G  I  L  M  L  M  *  R  S  Q  L  L  R  V  L  V  R  *  L  E  L  L  H  Q  T  L  H  M  M  T  T  K  *  R :   I  S  F  N  *  L  C  R  L  L  R  I  W  M  T  S  L  A  D  L  I  I  R  G  *  *  S  L  R  Q  W  P  R  S  G  H  V  L  S  C  W  I  *  N  V  M  G  S  S  L  R  C  F  S  T  S  L  K  L  *   : E  R  I  T  L  K  M  F  F  H  P  W  Q  Q  S  *  L  L  C  W  K  R  A  K  K  C  R  W  N  C  L  P  L  Y  W  L  V  L  K  R  T  M  R :   R  S  H  Q  W  L  K  G  W  E  R  Q  Y  L  Q  T  V  L  Q  S  L  S  L  T  C  L  K  Q  *  N  H  C  K  S  P  *  M  S  T  I  R  L  L  L  Q  S  W  K  G  L  F  Q  L  L  M  V  L  M  T  V  L  L  R  T  N   </first_frame>
            <second_frame>  K  A  H  L  F  F  *  G  F  T  R  S  L  L  P  L  Q  N  T  S  E  L  R  F  L  G  L  R  F  V  F  V  R  V  F  D  G  P  R  S  D  L  R  V  *  I  L  I  F  S  G  R  F  *  R  E  K  G  N  D  G  A  F  *  Q  R  A  *  R  A  D  C  C  C  W  E  Q  A  D  *  A  S  F  F  T  *  R  T  P  P  F  A  *   : P  S  R  V  F  P  V  *  S  G  A  V  T  S  E  I  N  A  *  C  T  F  S  I  D  E  G  I  G  C  K  *  S  L  E  A  F  *  C  *  C  E  G  R  S  C  F  V  Y  *  *  D  N  *  N  Y  C  T  R  R  S  I  *  *  R  Q  N  E   : G  Y  L  S  I  N  C  V  V  F  *  E  S  G  *  P  V  *  Q  I  L  *  *  E  G  D  D  P  *  D  S  G  Q  G  Q  V  M  C  C  H  A  G  S  R  M  *  W  A  H  R  *  D  V  S  A  L  P  *  S  Y  K  :  R  G  S  L  *  K  C  F  F  I  H  G  N  N  H  D  S  C  A  G  R  E  R  R  S  V  V  G  I  A  Y  P  S  I  G  *  C  *  K  G  Q  C   : G  G  H  T  S  G  *  K  V  G  R  D  S  I  C  K  L  C  C  K  A  *  A  L  L  A  S  S  S  R  I  I  A  N  L  L  K  *  V  Q  *  D  C  Y  F  S  L  G  R  D  S  S  S  C  *  W  Y  *  *  R  C  S  *  G  R  I  </second_frame>
            <third_frame>   K  L  T  C  S  S  R  V  S  Q  D  L  F  C  L  C  K  T  R  A  N  C  D  F  *  G  Y  D  L  C  L  F  G  C  L  M  V  R  G  V  I  *  G  Y  K  S  *  F  F  L  E  D  F  E  E  R  K  E  T  M  A  P  F  D  K  E  L  E  E  Q  I  A  V  A  G  N  K  L  I  E  P  P  S  S  L  E  E  L  L  R  L  L  D  :  Q  V  E  S  S  L  S  K  V  E  Q  S  P  A  K  S  M  H  D  A  L  S  P  L  M  K  A  L  V  A  N  D  L  L  R  H  S  D  V  D  V  K  V  A  V  A  S  C  I  S  E  I  T  R  I  T  A  P  D  A  P  Y  D  D  D  K  M  K  :  D  I  F  Q  L  I  V  S  S  F  E  N  L  D  D  Q  S  S  R  S  Y  N  K  R  V  M  I  L  E  T  V  A  K  V  R  S  C  V  V  M  L  D  L  E  C  D  G  L  I  A  E  M  F  Q  H  F  L  K  A  I  R :   E  D  H  S  E  N  V  F  S  S  M  A  T  I  M  T  L  V  L  E  E  S  E  E  V  S  L  E  L  L  T  P  L  L  A  S  V  K  K  D  N  A  :  E  V  T  P  V  A  K  R  L  G  E  T  V  F  A  N  C  A  A  K  L  K  P  Y  L  P  Q  A  V  E  S  L  Q  I  S  L  N  E  Y  N  K  I  V  T  S  V  L  E  G  T  L  P  A  V  D  G  I  N  D  G  A  P  K  D  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24098" stop="24235"/>
                    <exon start="27593" stop="27796"/>
                    <exon start="27870" stop="28051"/>
                    <exon start="29151" stop="29277"/>
                    <exon start="29377" stop="29574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLEDFEERKETMAPFDKELEEQIAVAGNKLIEPPSSLEELLRLLDQVESSLSKVEQSPAKSMHDALSPLMKALVANDLLRHSDVDVKVAVASCISEITRITAPDAPYDDDKMKDIFQLIVSSFENLDDQSSRSYNKRVMILETVAKVRSCVVMLDLECDGLIAEMFQHFLKAIREDHSENVFSSMATIMTLVLEESEEVSLELLTPLLASVKKDNAEVTPVAKRLGETVFANCAAKLKPYLPQAVESLQISLNEYNKIVTSVLEGTLPAVDGINDGAPKDEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40761" PGL_stop="56585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40761" e_stop="41105"/>
            <exon e_start="42279" e_stop="42360"/>
            <exon e_start="44355" e_stop="44433"/>
            <exon e_start="44511" e_stop="44608"/>
            <exon e_start="44694" e_stop="44750"/>
            <exon e_start="45325" e_stop="45412"/>
            <exon e_start="47120" e_stop="47226"/>
            <exon e_start="49258" e_stop="49365"/>
            <exon e_start="49545" e_stop="49696"/>
            <exon e_start="50359" e_stop="50469"/>
            <exon e_start="50562" e_stop="50631"/>
            <exon e_start="50769" e_stop="50808"/>
            <exon e_start="53552" e_stop="53716"/>
            <exon e_start="53850" e_stop="53926"/>
            <exon e_start="54145" e_stop="54261"/>
            <exon e_start="55313" e_stop="55578"/>
            <exon e_start="55691" e_stop="55786"/>
            <exon e_start="55880" e_stop="55955"/>
            <exon e_start="56036" e_stop="56585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.815" acc_prob="0.329" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.648" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="0.935"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.980" acc_prob="0.527" e_score="0.919"/>
          <exon-intron don_prob="0.906" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.489" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="40761" e_stop="41105" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42279" e_stop="42360" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.815" acc_prob="0.329">
            <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44355" e_stop="44433" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.975">
            <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44511" e_stop="44608" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44694" e_stop="44750" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.648">
            <gDNA_intron_boundary i_start="44751" i_stop="45324" i_length="574"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45325" e_stop="45412" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.915" acc_prob="0.976">
            <gDNA_intron_boundary i_start="45413" i_stop="47119" i_length="1707"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47120" e_stop="47226" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47227" i_stop="49257" i_length="2031"/>
          </intron>
          <exon e_serial="8" e_score="0.935">
            <gDNA_exon_boundary e_start="49258" e_stop="49365" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="49366" i_stop="49544" i_length="179"/>
          </intron>
          <exon e_serial="9" e_score="0.961">
            <gDNA_exon_boundary e_start="49545" e_stop="49696" e_length="152"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49697" i_stop="50358" i_length="662"/>
          </intron>
          <exon e_serial="10" e_score="0.919">
            <gDNA_exon_boundary e_start="50359" e_stop="50469" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="0.980" acc_prob="0.527">
            <gDNA_intron_boundary i_start="50470" i_stop="50561" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="50562" e_stop="50631" e_length="70"/>
          </exon>
          <intron i_serial="11" don_prob="0.906" acc_prob="0.980">
            <gDNA_intron_boundary i_start="50632" i_stop="50768" i_length="137"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="50769" e_stop="50808" e_length="40"/>
          </exon>
          <intron i_serial="12" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50809" i_stop="53551" i_length="2743"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="53552" e_stop="53716" e_length="165"/>
          </exon>
          <intron i_serial="13" don_prob="0.992" acc_prob="0.952">
            <gDNA_intron_boundary i_start="53717" i_stop="53849" i_length="133"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="53850" e_stop="53926" e_length="77"/>
          </exon>
          <intron i_serial="14" don_prob="0.978" acc_prob="0.764">
            <gDNA_intron_boundary i_start="53927" i_stop="54144" i_length="218"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="54145" e_stop="54261" e_length="117"/>
          </exon>
          <intron i_serial="15" don_prob="0.880" acc_prob="0.958">
            <gDNA_intron_boundary i_start="54262" i_stop="55312" i_length="1051"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="55313" e_stop="55578" e_length="266"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55579" i_stop="55690" i_length="112"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="55691" e_stop="55786" e_length="96"/>
          </exon>
          <intron i_serial="17" don_prob="0.960" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55787" i_stop="55879" i_length="93"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="55880" e_stop="55955" e_length="76"/>
          </exon>
          <intron i_serial="18" don_prob="0.975" acc_prob="0.489">
            <gDNA_intron_boundary i_start="55956" i_stop="56035" i_length="80"/>
          </intron>
          <exon e_serial="19" e_score="0.987">
            <gDNA_exon_boundary e_start="56036" e_stop="56585" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40761" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40761" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40896" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40905" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
              <exon start="45325" stop="45412"/>
              <exon start="47120" stop="47226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40913" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
              <exon start="45325" stop="45409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44384" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
              <exon start="45325" stop="45412"/>
              <exon start="47120" stop="47226"/>
              <exon start="49258" stop="49365"/>
              <exon start="49545" stop="49696"/>
              <exon start="50359" stop="50469"/>
              <exon start="50562" stop="50567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50411" stop="50469"/>
              <exon start="50562" stop="50631"/>
              <exon start="50769" stop="50808"/>
              <exon start="53552" stop="53716"/>
              <exon start="53850" stop="53926"/>
              <exon start="54145" stop="54261"/>
              <exon start="55313" stop="55578"/>
              <exon start="55691" stop="55720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50411" stop="50469"/>
              <exon start="50562" stop="50631"/>
              <exon start="50769" stop="50808"/>
              <exon start="53552" stop="53716"/>
              <exon start="53850" stop="53926"/>
              <exon start="54145" stop="54261"/>
              <exon start="55313" stop="55356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50606" stop="50631"/>
              <exon start="50769" stop="50808"/>
              <exon start="53552" stop="53716"/>
              <exon start="53850" stop="53926"/>
              <exon start="54145" stop="54261"/>
              <exon start="55313" stop="55383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53593" stop="53716"/>
              <exon start="53850" stop="53926"/>
              <exon start="54145" stop="54261"/>
              <exon start="55313" stop="55578"/>
              <exon start="55691" stop="55749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54200" stop="54261"/>
              <exon start="55313" stop="55578"/>
              <exon start="55691" stop="55786"/>
              <exon start="55880" stop="55955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54223" stop="54261"/>
              <exon start="55313" stop="55578"/>
              <exon start="55691" stop="55786"/>
              <exon start="55880" stop="55953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55332" stop="55578"/>
              <exon start="55691" stop="55786"/>
              <exon start="55880" stop="55955"/>
              <exon start="56036" stop="56179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55363" stop="55578"/>
              <exon start="55691" stop="55786"/>
              <exon start="55880" stop="55955"/>
              <exon start="56036" stop="56569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55422" stop="55578"/>
              <exon start="55691" stop="55786"/>
              <exon start="55880" stop="55955"/>
              <exon start="56036" stop="56260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56100" stop="56585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATATAAAACAAAACACCTTCCATAAACAAAGTGACGACGACGTCGTATTAAGTCCCTCCAGAAACCCCAAATCAAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTTCTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA : ATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAG : CATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAG : CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAG : GAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG : TACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTCAAG : TTTCTCCTGGACAGCCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTGCAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGG : ATGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACTGGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAACAAG : AAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTAT : ACCTGTAGAGGTAGAACTTTCTATTCTGGAAGACTTGAGGAACCGCGTACAGTTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATTTGTTAATACACACAATGG : ACTAAACTGTGCATCAATATCACATGATGGATCACTAGTGGCTGGTGGATTCTCAGATTCATCTGTGAAG : GTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCAT : CTTTTTTGCAGGGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGTTATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGGGATTTTCTTCTTTCTTCATCATCAGATTCAACTG : TTCGCTTATGGAGCACAAAGTTAAATGCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAG : TTTAGCCCAGCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGACAGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGAT : TGTGTGCGATGGCACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGACGTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTGGCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATGTGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGGTCACTTGCTTTTAG : TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTAAAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA : CAAATCTGGAGGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCTTTGCAC : TTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGAGTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGGTGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCATGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAATTTGGAATGTGGAGGTCTTTTATTTTCTATGGTGGATGAACGTCGGATTTGTAAATGCTTATTTAATGTATGTCCTTAAAATGACGATGTTCCTGTAACCCTGATACCATTGCTTATCCCATTGGTGGAATATTGGAAGCATGGGCAGAAAGGTATACAATTTAGCATCTTCTAAAACTATATTTTGGGAGTAGGATGTCTCAAGCATTTGTGGTTTTGTGTATGTTAACCATGTTTGTTTACAGACCCTTTCCCTGTTTCTACCTTGTGGATTATGTATGAATTTTAGCTGAACTAAAAAGTTTGAAATTCGTTTGGATTAGCTT</gDNA_template>
            <first_frame> K  K  Y  K  T  K  H  L  P  *  T  K  *  R  R  R  R  I  K  S  L  Q  K  P  Q  I  K  I  L  G  P  I  N  P  R  C  F  L  L  L  L  P  N  S  Q  N  L  T  I  S  R  H  G  *  R  R  D  *  E  S  S  R  S  V  F  E  E  E  G  F  Q  A  N  G  D  C  F  S  R  R  T  A  S  E  *  K  Q  F  F  F  N  P  *  *  Q  Q  L  S  K  F  S  D  *  P  R  L  N  Q  K  N  P  F  F  L  *  :  I  *  N  Q  S  P  T  I  P  R  R  I  *  Q  T  S  V  M  G  L  *  F  T  G  S  V  *   : A  *  V  A  S  C  F  I  S  C  I  Y  S  L  F  H  G  T  C  R  *  R  L  Y  S  R  S :   T  S  L  F  Q  *  L  P  *  R  P  *  D  D  A  S  A  *  S  S  E  V  R  R  R  P  L  T  F  P  S  R   : G  N  G  I  C  S  F  Y  T  G  E  Q  S  E  H  *  D  V  S   : V  L  L  *  P  S  V  A  I  L  A  Q  D  R  I  Y  Y  N  A  W  D  H  Q  *  A  H  *  F  S  S :   F  S  W  T  A  W  L  Y  I  W  *  Y  G  S  C  N  S  C  C  K  W  P  *  C  *  S  H  K  S  E  R  S  S  L  G   : D  A  *  R  F  F  R  R  T  V  R  K  D  W  R  F  C  S  R  F  G  K  V  *  W  R  S  E  G  R  R  S  G  R  K  Q   : E  E  V  N  *  R  W  *  T  W  C  T  S  *  K  T  K  E  G  Q  S  W  D  C  N  R  E  I  F  S  Y  R  E  Q  H  S  D  N  C  T  T  C  Q  T  G  T  C  F  T  C  Y  :  T  C  R  G  R  T  F  Y  S  G  R  L  E  E  P  R  T  V  E  *  C  I  I  A  L  C  *  L  L  Y  I  C  *  Y  T  Q  W  :  T  K  L  C  I  N  I  T  *  W  I  T  S  G  W  W  I  L  R  F  I  C  E   : G  L  G  H  G  K  A  W  G  T  N  W  S  I :   F  F  A  G  G  D  *  F  T  F  K  *  A  C  A  W  R  K  W  W  K  K  M  L  Y  I  T  S  G  P  F  R  A  C  L  F  C  I  I  Q  S  A  R  G  F  S  S  F  F  I  I  R  F  N  C :   S  L  M  E  H  K  V  K  C  *  C  C  L  L  Q  R  P  Q  L  P  S  M  G  C  S   : V  *  P  S  W  T  L  F  C  Q  F  F  T  *  P  H  C  K  D  L  V  C  G  Q  D  T  A  S  K  N  N  G  R  T  L  V  R  C  R   : L  C  A  M  A  R  K  L  Q  L  H  C  N  R  I  K  R  Q  N  C  T  L  V  G  R  P  E  W  *  L  C  Q  N  F  H  W  S  *  E  Y  D  P  I  I  G  N  V  S  *  W  S  I  Y  G  I  R  *  *  R  W  N  S  H  D  V  G  S  L  K  W  T  L  Y  Y  S  F  D  R  S  F  L  L  C  V  V  T  C  F  *  :  W  *  R  F  T  S  C  I  G  L  C  G  L  H  C  K  I  M  G  C  N  H  K  H  Q  S  A  T  K  R  R  E  :  Q  I  W  R  *  Q  *  A  S  V  I  E  D  P  T  Y  Q  S  Y  T  N  L  C  F  A   : L  F  T  K  K  S  F  I  C  C  W  S  F  L  E  K  C  T  S  P  L  L  *  S  L  L  T  *  D  Y  I  M  V  P  L  Q  I  L  V  Q  S  S  M  A  S  F  T  S  Q  T  S  V  L  L  E  E  Q  L  M  L  V  T  R  A  S  H  N  T  I  L  H  H  M  V  *  F  G  M  W  R  S  F  I  F  Y  G  G  *  T  S  D  L  *  M  L  I  *  C  M  S  L  K  *  R  C  S  C  N  P  D  T  I  A  Y  P  I  G  G  I  L  E  A  W  A  E  R  Y  T  I  *  H  L  L  K  L  Y  F  G  S  R  M  S  Q  A  F  V  V  L  C  M  L  T  M  F  V  Y  R  P  F  P  C  F  Y  L  V  D  Y  V  *  I  L  A  E  L  K  S  L  K  F  V  W  I  S   </first_frame>
            <second_frame>  K  N  I  K  Q  N  T  F  H  K  Q  S  D  D  D  V  V  L  S  P  S  R  N  P  K  S  K  F  S  V  L  *  T  P  G  V  F  F  F  F  F  P  I  L  K  I  L  P  F  L  A  M  D  E  E  E  I  E  K  A  V  V  A  Y  L  K  K  K  G  F  K  Q  T  E  I  A  F  Q  E  E  Q  Q  V  N  K  N  S  S  S  S  I  H  N  N  N  N  S  A  N  S  Q  I  D  P  D  L  T  K  K  I  L  S  F  S  E :   F  E  T  S  P  Q  R  Y  Q  E  E  Y  S  K  L  R  S  W  A  Y  S  S  L  D  L  Y  K  :  H  E  L  L  R  V  L  Y  P  V  F  I  H  C  F  M  E  L  V  A  R  G  Y  I  Q  E   : A  R  A  F  F  N  S  Y  R  E  D  H  E  M  T  H  L  R  D  L  Q  K  L  E  G  V  L  S  P  S  H  L  E  :  E  M  E  F  A  H  S  I  R  V  S  K  V  N  I  K  M  C  Q  :  Y  S  Y  D  L  L  L  Q  Y  L  H  K  T  E  S  I  T  M  L  G  I  I  N  E  R  I  N  F  Q   : V  S  P  G  Q  P  G  S  I  S  G  D  T  E  V  V  T  L  V  A  S  G  H  D  A  S  L  I  N  Q  K  E  V  L  W  G  :  M  L  E  D  S  L  E  E  R  L  E  K  T  G  G  S  V  P  D  S  E  K  F  D  G  D  P  K  E  G  E  V  E  E  N  K  :  K  K  S  I  E  G  G  K  H  G  A  P  L  K  K  L  K  K  D  K  V  G  I  A  T  G  K  S  S  R  T  E  S  S  T  V  T  T  A  P  R  V  K  P  E  L  A  L  P  A  I :   P  V  E  V  E  L  S  I  L  E  D  L  R  N  R  V  Q  L  S  N  A  S  L  P  S  V  S  F  Y  T  F  V  N  T  H  N  G :   L  N  C  A  S  I  S  H  D  G  S  L  V  A  G  G  F  S  D  S  S  V  K  :  V  W  D  M  A  K  L  G  E  Q  T  G  P   : S  F  L  Q  G  E  T  D  S  P  S  S  E  H  V  L  G  A  N  G  G  R  R  C  Y  T  L  L  Q  G  H  S  G  P  V  Y  S  A  S  F  S  P  H  G  D  F  L  L  S  S  S  S  D  S  T   : V  R  L  W  S  T  K  L  N  A  N  V  V  C  Y  K  G  H  N  Y  P  V  W  D  V  Q  :  F  S  P  A  G  H  Y  F  A  S  S  S  H  D  R  T  A  R  I  W  S  V  D  R  I  Q  P  L  R  I  M  A  G  H  L  S  D  V  D  :  C  V  R  W  H  A  N  C  N  Y  I  A  T  G  S  S  D  K  T  V  R  L  W  D  V  Q  S  G  D  C  V  R  I  F  I  G  H  R  S  M  I  L  S  L  A  M  S  P  D  G  R  Y  M  A  S  G  D  E  D  G  T  V  M  M  W  D  L  S  S  G  R  C  I  T  P  L  T  G  H  S  S  C  V  W  S  L  A  F  S :   G  E  G  S  L  L  A  S  G  S  A  D  C  T  V  K  L  W  D  V  T  T  S  T  R  A  P  L  K  E  E  N :   K  S  G  G  N  N  R  L  R  L  L  K  T  L  P  T  K  A  T  P  I  Y  A  L  H  :  F  S  R  R  N  L  L  F  A  A  G  A  F  S  K  S  A  R  V  P  C  F  K  V  S  *  R  E  I  T  S  W  F  P  C  K  F  W  C  N  H  Q  W  Q  V  L  L  L  R  P  R  F  C  *  R  S  N  S  C  W  *  H  V  H  L  T  I  Q  F  C  I  T  W  C  N  L  E  C  G  G  L  L  F  S  M  V  D  E  R  R  I  C  K  C  L  F  N  V  C  P  *  N  D  D  V  P  V  T  L  I  P  L  L  I  P  L  V  E  Y  W  K  H  G  Q  K  G  I  Q  F  S  I  F  *  N  Y  I  L  G  V  G  C  L  K  H  L  W  F  C  V  C  *  P  C  L  F  T  D  P  F  P  V  S  T  L  W  I  M  Y  E  F  *  L  N  *  K  V  *  N  S  F  G  L  A  </second_frame>
            <third_frame>   K  I  *  N  K  T  P  S  I  N  K  V  T  T  T  S  Y  *  V  P  P  E  T  P  N  Q  N  S  R  S  Y  K  P  Q  V  F  S  S  S  S  S  Q  F  S  K  S  Y  H  F  S  P  W  M  K  K  R  L  R  K  Q  S  *  R  I  *  R  R  R  V  S  S  K  R  R  L  L  F  K  K  N  S  K  *  I  K  T  V  L  L  Q  S  I  I  T  T  T  Q  Q  I  L  R  L  T  P  T  *  P  K  K  S  F  L  S  L   : N  L  K  P  V  P  N  D  T  K  K  N  I  A  N  F  G  H  G  P  I  V  H  W  I  C  I  S :   M  S  C  F  V  F  Y  I  L  Y  L  F  I  V  S  W  N  L  S  L  E  V  I  F  K  K  :  H  E  P  F  S  I  V  T  V  K  T  M  R  *  R  I  C  V  I  F  R  S  *  K  A  S  S  H  L  P  I  *  R :   K  W  N  L  L  I  L  Y  G  *  A  K  *  T  L  R  C  V  S :   T  P  M  T  F  C  C  N  T  C  T  R  Q  N  L  L  Q  C  L  G  S  S  M  S  A  L  I  F  K  :  F  L  L  D  S  L  A  L  Y  L  V  I  R  K  L  *  L  L  L  Q  V  A  M  M  L  V  S  *  I  R  K  K  F  F  G  G :   C  L  K  I  L  *  K  N  G  *  K  R  L  E  V  L  F  Q  I  R  K  S  L  M  E  I  R  R  K  E  K  W  K  K  T  R :   R  S  Q  L  K  V  V  N  M  V  H  L  L  K  N  *  R  R  T  K  L  G  L  Q  Q  G  N  L  L  V  Q  R  A  A  Q  *  Q  L  H  H  V  S  N  R  N  L  L  Y  L  L   : Y  L  *  R  *  N  F  L  F  W  K  T  *  G  T  A  Y  S  *  V  M  H  H  C  P  L  L  A  S  I  H  L  L  I  H  T  M   : D  *  T  V  H  Q  Y  H  M  M  D  H  *  W  L  V  D  S  Q  I  H  L  *  R :   S  G  T  W  Q  S  L  G  N  K  L  V  H  :  L  F  C  R  G  R  L  I  H  L  Q  V  S  M  C  L  A  Q  M  V  E  E  D  V  I  H  Y  F  R  A  I  Q  G  L  F  I  L  H  H  S  V  R  T  G  I  F  F  F  L  H  H  Q  I  Q  L  :  F  A  Y  G  A  Q  S  *  M  L  M  L  F  A  T  K  A  T  I  T  Q  Y  G  M  F  S :   L  A  Q  L  D  I  I  L  P  V  L  H  M  T  A  L  Q  G  S  G  L  W  T  G  Y  S  L  *  E  *  W  P  D  T  C  Q  M  *  I :   V  C  D  G  T  Q  I  A  I  T  L  Q  P  D  Q  A  T  K  L  Y  A  C  G  T  S  R  V  V  T  V  S  E  F  S  L  V  I  G  V  *  S  Y  H  W  Q  C  L  L  M  V  D  I  W  H  P  V  M  K  M  E  Q  S  *  C  G  I  S  Q  V  D  V  V  L  L  L  *  P  V  I  P  L  V  C  G  H  L  L  L   : V  V  K  V  H  F  L  H  R  A  L  R  I  A  L  *  N  Y  G  M  *  P  Q  A  P  E  R  H  *  K  K  R   : T  N  L  E  V  T  I  G  F  G  Y  *  R  P  Y  L  P  K  L  H  Q  S  M  L  C  T :   F  H  E  E  I  F  Y  L  L  L  E  L  S  R  K  V  H  E  S  L  A  L  K  S  L  D  V  R  L  H  H  G  S  L  A  N  F  G  A  I  I  N  G  K  F  Y  F  S  D  L  G  F  V  R  G  A  T  H  V  G  D  T  C  I  S  Q  Y  N  F  A  S  H  G  V  I  W  N  V  E  V  F  Y  F  L  W  W  M  N  V  G  F  V  N  A  Y  L  M  Y  V  L  K  M  T  M  F  L  *  P  *  Y  H  C  L  S  H  W  W  N  I  G  S  M  G  R  K  V  Y  N  L  A  S  S  K  T  I  F  W  E  *  D  V  S  S  I  C  G  F  V  Y  V  N  H  V  C  L  Q  T  L  S  L  F  L  P  C  G  L  C  M  N  F  S  *  T  K  K  F  E  I  R  L  D  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40858" stop="41105"/>
                    <exon start="42279" stop="42360"/>
                    <exon start="44355" stop="44433"/>
                    <exon start="44511" stop="44608"/>
                    <exon start="44694" stop="44750"/>
                    <exon start="45325" stop="45412"/>
                    <exon start="47120" stop="47226"/>
                    <exon start="49258" stop="49365"/>
                    <exon start="49545" stop="49696"/>
                    <exon start="50359" stop="50469"/>
                    <exon start="50562" stop="50631"/>
                    <exon start="50769" stop="50808"/>
                    <exon start="53552" stop="53716"/>
                    <exon start="53850" stop="53926"/>
                    <exon start="54145" stop="54261"/>
                    <exon start="55313" stop="55578"/>
                    <exon start="55691" stop="55786"/>
                    <exon start="55880" stop="55955"/>
                    <exon start="56036" stop="56113"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2112</number_coding_nucleotides>
                  <number_encoded_amino_acids>704</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPGVFFFFFPILKILPFLAMDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQVNKNSSSSIHNNNNSANSQIDPDLTKKILSFSEFETSPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGYIQEARAFFNSYREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRVSKVNIKMCQYSYDLLLQYLHKTESITMLGIINERINFQVSPGQPGSISGDTEVVTLVASGHDASLINQKEVLWGMLEDSLEERLEKTGGSVPDSEKFDGDPKEGEVEENKKKSIEGGKHGAPLKKLKKDKVGIATGKSSRTESSTVTTAPRVKPELALPAIPVEVELSILEDLRNRVQLSNASLPSVSFYTFVNTHNGLNCASISHDGSLVAGGFSDSSVKVWDMAKLGEQTGPSFLQGETDSPSSEHVLGANGGRRCYTLLQGHSGPVYSASFSPHGDFLLSSSSDSTVRLWSTKLNANVVCYKGHNYPVWDVQFSPAGHYFASSSHDRTARIWSVDRIQPLRIMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQSGDCVRIFIGHRSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLTGHSSCVWSLAFSGEGSLLASGSADCTVKLWDVTTSTRAPLKEENKSGGNNRLRLLKTLPTKATPIYALHFSRRNLLFAAGAFSKSARVPCFKVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40761" e_stop="41105"/>
            <exon e_start="42279" e_stop="42360"/>
            <exon e_start="44355" e_stop="44433"/>
            <exon e_start="44511" e_stop="44608"/>
            <exon e_start="44694" e_stop="44750"/>
            <exon e_start="45325" e_stop="45412"/>
            <exon e_start="47120" e_stop="47226"/>
            <exon e_start="49258" e_stop="49365"/>
            <exon e_start="49545" e_stop="49926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.815" acc_prob="0.329" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.648" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="0.981"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="40761" e_stop="41105" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41106" i_stop="42278" i_length="1173"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42279" e_stop="42360" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.815" acc_prob="0.329">
            <gDNA_intron_boundary i_start="42361" i_stop="44354" i_length="1994"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44355" e_stop="44433" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.975">
            <gDNA_intron_boundary i_start="44434" i_stop="44510" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44511" e_stop="44608" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44609" i_stop="44693" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44694" e_stop="44750" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.648">
            <gDNA_intron_boundary i_start="44751" i_stop="45324" i_length="574"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45325" e_stop="45412" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.915" acc_prob="0.976">
            <gDNA_intron_boundary i_start="45413" i_stop="47119" i_length="1707"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47120" e_stop="47226" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47227" i_stop="49257" i_length="2031"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="49258" e_stop="49365" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="49366" i_stop="49544" i_length="179"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="49545" e_stop="49926" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40761" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40761" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40896" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40905" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
              <exon start="45325" stop="45412"/>
              <exon start="47120" stop="47226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40913" stop="41105"/>
              <exon start="42279" stop="42360"/>
              <exon start="44355" stop="44433"/>
              <exon start="44511" stop="44608"/>
              <exon start="44694" stop="44750"/>
              <exon start="45325" stop="45409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44702" stop="44750"/>
              <exon start="45325" stop="45412"/>
              <exon start="47120" stop="47226"/>
              <exon start="49258" stop="49365"/>
              <exon start="49545" stop="49897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47186" stop="47226"/>
              <exon start="49258" stop="49365"/>
              <exon start="49545" stop="49926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATATAAAACAAAACACCTTCCATAAACAAAGTGACGACGACGTCGTATTAAGTCCCTCCAGAAACCCCAAATCAAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTTCTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGCAGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGAACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTCTCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA : ATTTGAAACCAGTCCCCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCTGTATAAG : CATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACTTGTCGCTAGAGGTTATATTCAAGAAG : CACGAGCCTTTTTCAATAGTTACCGTGAAGACCATGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCTAGAG : GAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCAG : TACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGGGATCATCAATGAGCGCATTAATTTTCAAG : TTTCTCCTGGACAGCCTGGCTCTATATCTGGTGATACGGAAGTTGTAACTCTTGTTGCAAGTGGCCATGATGCTAGTCTCATAAATCAGAAAGAAGTTCTTTGGGGG : ATGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACTGGAGGTTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAACAAG : AAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGACAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGCACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTACTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTCCCACGACATCATCCCTGTACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGATCCATTAGAAAACATCAAGTGAAACGGCTATACAAAGAAGTTGCATAAAAAAGGAAAATTATGAAGGATGAGGAAAATATGATTGA</gDNA_template>
            <first_frame> K  K  Y  K  T  K  H  L  P  *  T  K  *  R  R  R  R  I  K  S  L  Q  K  P  Q  I  K  I  L  G  P  I  N  P  R  C  F  L  L  L  L  P  N  S  Q  N  L  T  I  S  R  H  G  *  R  R  D  *  E  S  S  R  S  V  F  E  E  E  G  F  Q  A  N  G  D  C  F  S  R  R  T  A  S  E  *  K  Q  F  F  F  N  P  *  *  Q  Q  L  S  K  F  S  D  *  P  R  L  N  Q  K  N  P  F  F  L  *  :  I  *  N  Q  S  P  T  I  P  R  R  I  *  Q  T  S  V  M  G  L  *  F  T  G  S  V  *   : A  *  V  A  S  C  F  I  S  C  I  Y  S  L  F  H  G  T  C  R  *  R  L  Y  S  R  S :   T  S  L  F  Q  *  L  P  *  R  P  *  D  D  A  S  A  *  S  S  E  V  R  R  R  P  L  T  F  P  S  R   : G  N  G  I  C  S  F  Y  T  G  E  Q  S  E  H  *  D  V  S   : V  L  L  *  P  S  V  A  I  L  A  Q  D  R  I  Y  Y  N  A  W  D  H  Q  *  A  H  *  F  S  S :   F  S  W  T  A  W  L  Y  I  W  *  Y  G  S  C  N  S  C  C  K  W  P  *  C  *  S  H  K  S  E  R  S  S  L  G   : D  A  *  R  F  F  R  R  T  V  R  K  D  W  R  F  C  S  R  F  G  K  V  *  W  R  S  E  G  R  R  S  G  R  K  Q   : E  E  V  N  *  R  W  *  T  W  C  T  S  *  K  T  K  E  G  Q  S  W  D  C  N  R  E  I  F  S  Y  R  E  Q  H  S  D  N  C  T  T  C  Q  T  G  T  C  F  T  C  Y  V  L  L  K  P  I  I  L  L  T  K  R  K  R  E  G  P  I  V  F  F  S  P  T  T  S  S  L  Y  L  E  K  S  F  L  L  D  V  I  I  L  F  E  I  Q  S  S  *  S  I  R  K  H  Q  V  K  R  L  Y  K  E  V  A  *  K  R  K  I  M  K  D  E  E  N  M  I   </first_frame>
            <second_frame>  K  N  I  K  Q  N  T  F  H  K  Q  S  D  D  D  V  V  L  S  P  S  R  N  P  K  S  K  F  S  V  L  *  T  P  G  V  F  F  F  F  F  P  I  L  K  I  L  P  F  L  A  M  D  E  E  E  I  E  K  A  V  V  A  Y  L  K  K  K  G  F  K  Q  T  E  I  A  F  Q  E  E  Q  Q  V  N  K  N  S  S  S  S  I  H  N  N  N  N  S  A  N  S  Q  I  D  P  D  L  T  K  K  I  L  S  F  S  E :   F  E  T  S  P  Q  R  Y  Q  E  E  Y  S  K  L  R  S  W  A  Y  S  S  L  D  L  Y  K  :  H  E  L  L  R  V  L  Y  P  V  F  I  H  C  F  M  E  L  V  A  R  G  Y  I  Q  E   : A  R  A  F  F  N  S  Y  R  E  D  H  E  M  T  H  L  R  D  L  Q  K  L  E  G  V  L  S  P  S  H  L  E  :  E  M  E  F  A  H  S  I  R  V  S  K  V  N  I  K  M  C  Q  :  Y  S  Y  D  L  L  L  Q  Y  L  H  K  T  E  S  I  T  M  L  G  I  I  N  E  R  I  N  F  Q   : V  S  P  G  Q  P  G  S  I  S  G  D  T  E  V  V  T  L  V  A  S  G  H  D  A  S  L  I  N  Q  K  E  V  L  W  G  :  M  L  E  D  S  L  E  E  R  L  E  K  T  G  G  S  V  P  D  S  E  K  F  D  G  D  P  K  E  G  E  V  E  E  N  K  :  K  K  S  I  E  G  G  K  H  G  A  P  L  K  K  L  K  K  D  K  V  G  I  A  T  G  K  S  S  R  T  E  S  S  T  V  T  T  A  P  R  V  K  P  E  L  A  L  P  A  M  Y  S  S  N  L  L  S  Y  L  P  K  E  K  E  R  A  L  L  C  F  S  L  P  R  H  H  P  C  T  W  K  S  H  S  C  W  M  S  *  F  Y  L  K  Y  S  H  H  D  P  L  E  N  I  K  *  N  G  Y  T  K  K  L  H  K  K  G  K  L  *  R  M  R  K  I  *  L  </second_frame>
            <third_frame>   K  I  *  N  K  T  P  S  I  N  K  V  T  T  T  S  Y  *  V  P  P  E  T  P  N  Q  N  S  R  S  Y  K  P  Q  V  F  S  S  S  S  S  Q  F  S  K  S  Y  H  F  S  P  W  M  K  K  R  L  R  K  Q  S  *  R  I  *  R  R  R  V  S  S  K  R  R  L  L  F  K  K  N  S  K  *  I  K  T  V  L  L  Q  S  I  I  T  T  T  Q  Q  I  L  R  L  T  P  T  *  P  K  K  S  F  L  S  L   : N  L  K  P  V  P  N  D  T  K  K  N  I  A  N  F  G  H  G  P  I  V  H  W  I  C  I  S :   M  S  C  F  V  F  Y  I  L  Y  L  F  I  V  S  W  N  L  S  L  E  V  I  F  K  K  :  H  E  P  F  S  I  V  T  V  K  T  M  R  *  R  I  C  V  I  F  R  S  *  K  A  S  S  H  L  P  I  *  R :   K  W  N  L  L  I  L  Y  G  *  A  K  *  T  L  R  C  V  S :   T  P  M  T  F  C  C  N  T  C  T  R  Q  N  L  L  Q  C  L  G  S  S  M  S  A  L  I  F  K  :  F  L  L  D  S  L  A  L  Y  L  V  I  R  K  L  *  L  L  L  Q  V  A  M  M  L  V  S  *  I  R  K  K  F  F  G  G :   C  L  K  I  L  *  K  N  G  *  K  R  L  E  V  L  F  Q  I  R  K  S  L  M  E  I  R  R  K  E  K  W  K  K  T  R :   R  S  Q  L  K  V  V  N  M  V  H  L  L  K  N  *  R  R  T  K  L  G  L  Q  Q  G  N  L  L  V  Q  R  A  A  Q  *  Q  L  H  H  V  S  N  R  N  L  L  Y  L  L  C  T  P  Q  T  Y  Y  L  T  Y  Q  K  K  K  R  G  P  Y  C  V  F  L  S  H  D  I  I  P  V  L  G  K  V  I  L  V  G  C  H  N  F  I  *  N  T  V  I  M  I  H  *  K  T  S  S  E  T  A  I  Q  R  S  C  I  K  K  E  N  Y  E  G  *  G  K  Y  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40858" stop="41105"/>
                    <exon start="42279" stop="42360"/>
                    <exon start="44355" stop="44433"/>
                    <exon start="44511" stop="44608"/>
                    <exon start="44694" stop="44750"/>
                    <exon start="45325" stop="45412"/>
                    <exon start="47120" stop="47226"/>
                    <exon start="49258" stop="49365"/>
                    <exon start="49545" stop="49814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPGVFFFFFPILKILPFLAMDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQVNKNSSSSIHNNNNSANSQIDPDLTKKILSFSEFETSPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGYIQEARAFFNSYREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRVSKVNIKMCQYSYDLLLQYLHKTESITMLGIINERINFQVSPGQPGSISGDTEVVTLVASGHDASLINQKEVLWGMLEDSLEERLEKTGGSVPDSEKFDGDPKEGEVEENKKKSIEGGKHGAPLKKLKKDKVGIATGKSSRTESSTVTTAPRVKPELALPAMYSSNLLSYLPKEKERALLCFSLPRHHPCTWKSHSCWMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="57896" PGL_stop="57718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57896" e_stop="57718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="57896" e_stop="57718" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57896" stop="57718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTTTTTTCAGTTTAAAGCATATTGTTAGAGATGTAATTGGTTAGATTTATCATTTTGGTTGCTAGCTGTATTCACTTTTGTTACTTTTAGCCCTCTTAGCGTAGGAAGGAGATACTCTGTTGATGAGTATTTTATGGATGCGTTGGATCATAAATTACCATCTCTTCTCTTGGCT</gDNA_template>
            <first_frame> V  F  F  F  S  L  K  H  I  V  R  D  V  I  G  *  I  Y  H  F  G  C  *  L  Y  S  L  L  L  L  L  A  L  L  A  *  E  G  D  T  L  L  M  S  I  L  W  M  R  W  I  I  N  Y  H  L  F  S  W   </first_frame>
            <second_frame>  F  F  F  S  V  *  S  I  L  L  E  M  *  L  V  R  F  I  I  L  V  A  S  C  I  H  F  C  Y  F  *  P  S  *  R  R  K  E  I  L  C  *  *  V  F  Y  G  C  V  G  S  *  I  T  I  S  S  L  G  </second_frame>
            <third_frame>   F  F  F  Q  F  K  A  Y  C  *  R  C  N  W  L  D  L  S  F  W  L  L  A  V  F  T  F  V  T  F  S  P  L  S  V  G  R  R  Y  S  V  D  E  Y  F  M  D  A  L  D  H  K  L  P  S  L  L  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0046G10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="61839" PGL_stop="58028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61839" e_stop="60997"/>
            <exon e_start="60867" e_stop="60754"/>
            <exon e_start="60581" e_stop="60453"/>
            <exon e_start="59992" e_stop="59919"/>
            <exon e_start="59759" e_stop="59708"/>
            <exon e_start="59620" e_stop="59534"/>
            <exon e_start="59461" e_stop="59424"/>
            <exon e_start="58755" e_stop="58687"/>
            <exon e_start="58591" e_stop="58028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.679" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.582" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="61839" e_stop="60997" e_length="843"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="60996" i_stop="60868" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60867" e_stop="60754" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60753" i_stop="60582" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60581" e_stop="60453" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.679">
            <gDNA_intron_boundary i_start="60452" i_stop="59993" i_length="460"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59992" e_stop="59919" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="59918" i_stop="59760" i_length="159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59759" e_stop="59708" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.582" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59707" i_stop="59621" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59620" e_stop="59534" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59533" i_stop="59462" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59461" e_stop="59424" e_length="38"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59423" i_stop="58756" i_length="668"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="58755" e_stop="58687" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="58686" i_stop="58592" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="58591" e_stop="58028" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61839" stop="61246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61826" stop="61183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61310" stop="60997"/>
              <exon start="60867" stop="60754"/>
              <exon start="60581" stop="60566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61295" stop="60997"/>
              <exon start="60867" stop="60774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60842" stop="60754"/>
              <exon start="60581" stop="60453"/>
              <exon start="59992" stop="59919"/>
              <exon start="59759" stop="59708"/>
              <exon start="59620" stop="59534"/>
              <exon start="59461" stop="59424"/>
              <exon start="58755" stop="58687"/>
              <exon start="58591" stop="58586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59952" stop="59919"/>
              <exon start="59759" stop="59708"/>
              <exon start="59620" stop="59534"/>
              <exon start="59461" stop="59424"/>
              <exon start="58755" stop="58687"/>
              <exon start="58591" stop="58028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59461" stop="59424"/>
              <exon start="58755" stop="58687"/>
              <exon start="58591" stop="58169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGCTGAGAGCGGGAGGGATGAGGCATGTTTGGAAGATATTGAGCCTGCTGTGAATGGATCTCCCAAATCAATCACAAGCAATGGTGGTAGTTTGGAGAATGTGAGATTGACTTCTGAAACAGAATCGCTGATGAAAGCTGGAGCTCATGATGAGGTGGATCTCCATGATGCTTCAAAGATACCATCTGAATCTGATGATTCAAGGGTTGAAAAGTCTACAAAGTCGGAGCCCAAGTCTATGAAGTCAGAGCCCAAGTCGGAGCAACCTTCTAAGAAGAGAGGAAGGAAGACAGTCTCTTCAATAAACTCAGCCGAATCTTCTCACCAAGCTCCTGAAGGAAGTGGAAAAGAAATTGAGAAGCTTCAAGATCATCAGAATGATCAAAACAAAGATGACCATAGTTCAGCTTCTGAAGATCCAGTGGTTGAGCAGTCCAATCTGTTGGAGAAGGAACCAGAAACTAATCAGCACTCTGCACCCAAAGAATCTGAGGAGGAAGTTGTGGATGTTGCTCCTCCATCCCAAGGTCAGAGCCTTCCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGACGGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGGCGCCCTTTGAGGAAGACTCCTTTAGAACCTTGTCGTAAGGAGAAAGGTGGATCCACCAGTGATACCGAGGCTAAAAAGCTGAAGCAATCGGGTAAGAATGTTGACACCAAAAATAAGAGTCAGGTTGGTCCATCTGCGAGAAATAAGGAAGATAGCAAAAAACGTGGACATGGAAAAGCTAGTCAG : GAGACGTTGCCTTCACAAGAGTCTCCTGATCGCTCTGTTAAACATGATGAAGATAACGAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGCGTTCTTCAAGCAAGGGCAGG : GGGAGTAGGCAAGTTGTGCAGAAGAGTGTGCCTACGCCCGAGTCTCCCGACAATTCAACTAAACATATAAGCGACGAAGATGAGACTGACACAAGTGCAAAGAAAAAGCCTTCTTCAGGCAACGACAGG : GTAACAGAGACTGTGCAATGTGATAAGAATCTGGTTGGTAGAAAGATCAGAGTTTGGTGGCCATTAGATGAACT : ATTTTATGAAGGGACGGTTAGCAATTATGATTCTTCCAGGAAGAAGTTCACA : GTTGACTATACTGATGGAGAGACAGAAAAATTGAATCTCTTGAAGGAACGCTGGGAACTTGTTGAAGATGATAATATGTCAGAAGAG : GAGCAAGTAGCCAGCGCTGATGCAGCAGCTTCGGAAAG : TCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCACCTAAAAG : CAAGTCAAAAGAGGCGACAGCTAAATCTGGACAGAAATCCAAGGGTAAACTCAACTTGAAAGATGGCACCTCAAAATCTGCCGGGAAAGCTGATGACACAACCAGCAGCAAGTCTGCGGCTCCATCCAAAAGGAGCACTGGCAAATCAGTTGATACTGAAAAGCCATCTGCCAGGTCTAAAGATGTTAGTAGTAGTACTCCCAAATCCAAGTCCAGGCAAGATACTCCATCAACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCCAACAAGTCCAAAACCAAAACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAGAAGCTAAAATCTAGTTCATCAAAGGTTAAAGAGAGTGGGAACCAGAAGGAAAAAGCAACTAACTCAGCAAAAACCCCTGATGGCAGCACCAAGGAGAAACTGTCTAGTGCATCAAAGGAACGACAGAGTGAGCCCAAGAGTGGAAAGAAGCGTGCGAGGGGGAAAAACTGATTATTTGTTGCACATTGTAATAGTGGAGCTCCTCCTACTTACATTCTTGGACCCATTGC</gDNA_template>
            <first_frame> T  A  E  S  G  R  D  E  A  C  L  E  D  I  E  P  A  V  N  G  S  P  K  S  I  T  S  N  G  G  S  L  E  N  V  R  L  T  S  E  T  E  S  L  M  K  A  G  A  H  D  E  V  D  L  H  D  A  S  K  I  P  S  E  S  D  D  S  R  V  E  K  S  T  K  S  E  P  K  S  M  K  S  E  P  K  S  E  Q  P  S  K  K  R  G  R  K  T  V  S  S  I  N  S  A  E  S  S  H  Q  A  P  E  G  S  G  K  E  I  E  K  L  Q  D  H  Q  N  D  Q  N  K  D  D  H  S  S  A  S  E  D  P  V  V  E  Q  S  N  L  L  E  K  E  P  E  T  N  Q  H  S  A  P  K  E  S  E  E  E  V  V  D  V  A  P  P  S  Q  G  Q  S  L  P  E  E  I  A  L  K  K  G  D  L  P  M  E  D  N  S  N  Q  D  G  E  S  K  K  E  I  E  A  G  S  D  L  E  V  K  Q  V  R  R  P  L  R  K  T  P  L  E  P  C  R  K  E  K  G  G  S  T  S  D  T  E  A  K  K  L  K  Q  S  G  K  N  V  D  T  K  N  K  S  Q  V  G  P  S  A  R  N  K  E  D  S  K  K  R  G  H  G  K  A  S  Q  :  E  T  L  P  S  Q  E  S  P  D  R  S  V  K  H  D  E  D  N  E  E  E  I  P  R  T  T  T  K  R  K  R  S  S  S  K  G  R  :  G  S  R  Q  V  V  Q  K  S  V  P  T  P  E  S  P  D  N  S  T  K  H  I  S  D  E  D  E  T  D  T  S  A  K  K  K  P  S  S  G  N  D  R  :  V  T  E  T  V  Q  C  D  K  N  L  V  G  R  K  I  R  V  W  W  P  L  D  E  L :   F  Y  E  G  T  V  S  N  Y  D  S  S  R  K  K  F  T  :  V  D  Y  T  D  G  E  T  E  K  L  N  L  L  K  E  R  W  E  L  V  E  D  D  N  M  S  E  E  :  E  Q  V  A  S  A  D  A  A  A  S  E  S :   H  K  K  K  K  P  R  N  A  E  P  S  L  K  H  E  M  D  A  S  P  K  S :   K  S  K  E  A  T  A  K  S  G  Q  K  S  K  G  K  L  N  L  K  D  G  T  S  K  S  A  G  K  A  D  D  T  T  S  S  K  S  A  A  P  S  K  R  S  T  G  K  S  V  D  T  E  K  P  S  A  R  S  K  D  V  S  S  S  T  P  K  S  K  S  R  Q  D  T  P  S  T  T  A  N  K  S  K  Q  E  T  V  K  A  A  N  K  S  K  T  K  T  P  Q  S  G  G  K  S  G  A  N  G  S  E  K  L  K  S  S  S  S  K  V  K  E  S  G  N  Q  K  E  K  A  T  N  S  A  K  T  P  D  G  S  T  K  E  K  L  S  S  A  S  K  E  R  Q  S  E  P  K  S  G  K  K  R  A  R  G  K  N  *  L  F  V  A  H  C  N  S  G  A  P  P  T  Y  I  L  G  P  I   </first_frame>
            <second_frame>  R  L  R  A  G  G  M  R  H  V  W  K  I  L  S  L  L  *  M  D  L  P  N  Q  S  Q  A  M  V  V  V  W  R  M  *  D  *  L  L  K  Q  N  R  *  *  K  L  E  L  M  M  R  W  I  S  M  M  L  Q  R  Y  H  L  N  L  M  I  Q  G  L  K  S  L  Q  S  R  S  P  S  L  *  S  Q  S  P  S  R  S  N  L  L  R  R  E  E  G  R  Q  S  L  Q  *  T  Q  P  N  L  L  T  K  L  L  K  E  V  E  K  K  L  R  S  F  K  I  I  R  M  I  K  T  K  M  T  I  V  Q  L  L  K  I  Q  W  L  S  S  P  I  C  W  R  R  N  Q  K  L  I  S  T  L  H  P  K  N  L  R  R  K  L  W  M  L  L  L  H  P  K  V  R  A  F  L  K  R  L  H  *  R  R  V  I  S  Q  W  R  T  T  Q  I  K  T  V  S  L  R  R  K  L  K  L  E  V  T  W  K  L  S  R  *  G  A  L  *  G  R  L  L  *  N  L  V  V  R  R  K  V  D  P  P  V  I  P  R  L  K  S  *  S  N  R  V  R  M  L  T  P  K  I  R  V  R  L  V  H  L  R  E  I  R  K  I  A  K  N  V  D  M  E  K  L  V  R :   R  R  C  L  H  K  S  L  L  I  A  L  L  N  M  M  K  I  T  K  R  K  F  P  G  P  L  Q  R  E  S  V  L  Q  A  R  A  G :   G  V  G  K  L  C  R  R  V  C  L  R  P  S  L  P  T  I  Q  L  N  I  *  A  T  K  M  R  L  T  Q  V  Q  R  K  S  L  L  Q  A  T  T  G :   *  Q  R  L  C  N  V  I  R  I  W  L  V  E  R  S  E  F  G  G  H  *  M  N   : Y  F  M  K  G  R  L  A  I  M  I  L  P  G  R  S  S  Q :   L  T  I  L  M  E  R  Q  K  N  *  I  S  *  R  N  A  G  N  L  L  K  M  I  I  C  Q  K  R :   S  K  *  P  A  L  M  Q  Q  L  R  K   : V  I  R  R  K  N  L  G  M  L  N  H  H  *  S  M  K  W  M  L  H  L  K   : A  S  Q  K  R  R  Q  L  N  L  D  R  N  P  R  V  N  S  T  *  K  M  A  P  Q  N  L  P  G  K  L  M  T  Q  P  A  A  S  L  R  L  H  P  K  G  A  L  A  N  Q  L  I  L  K  S  H  L  P  G  L  K  M  L  V  V  V  L  P  N  P  S  P  G  K  I  L  H  Q  Q  L  P  T  S  P  S  K  K  Q  L  K  L  P  T  S  P  K  P  K  P  P  K  V  V  A  S  P  V  P  M  V  R  R  S  *  N  L  V  H  Q  R  L  K  R  V  G  T  R  R  K  K  Q  L  T  Q  Q  K  P  L  M  A  A  P  R  R  N  C  L  V  H  Q  R  N  D  R  V  S  P  R  V  E  R  S  V  R  G  G  K  T  D  Y  L  L  H  I  V  I  V  E  L  L  L  L  T  F  L  D  P  L  </second_frame>
            <third_frame>   G  *  E  R  E  G  *  G  M  F  G  R  Y  *  A  C  C  E  W  I  S  Q  I  N  H  K  Q  W  W  *  F  G  E  C  E  I  D  F  *  N  R  I  A  D  E  S  W  S  S  *  *  G  G  S  P  *  C  F  K  D  T  I  *  I  *  *  F  K  G  *  K  V  Y  K  V  G  A  Q  V  Y  E  V  R  A  Q  V  G  A  T  F  *  E  E  R  K  E  D  S  L  F  N  K  L  S  R  I  F  S  P  S  S  *  R  K  W  K  R  N  *  E  A  S  R  S  S  E  *  S  K  Q  R  *  P  *  F  S  F  *  R  S  S  G  *  A  V  Q  S  V  G  E  G  T  R  N  *  S  A  L  C  T  Q  R  I  *  G  G  S  C  G  C  C  S  S  I  P  R  S  E  P  S  *  R  D  C  T  E  E  G  *  S  P  N  G  G  Q  L  K  S  R  R  *  V  *  E  G  N  *  S  W  K  *  L  G  S  *  A  G  E  A  P  F  E  E  D  S  F  R  T  L  S  *  G  E  R  W  I  H  Q  *  Y  R  G  *  K  A  E  A  I  G  *  E  C  *  H  Q  K  *  E  S  G  W  S  I  C  E  K  *  G  R  *  Q  K  T  W  T  W  K  S  *  S   : G  D  V  A  F  T  R  V  S  *  S  L  C  *  T  *  *  R  *  R  R  G  N  S  Q  D  H  Y  K  E  K  A  F  F  K  Q  G  Q   : G  E  *  A  S  C  A  E  E  C  A  Y  A  R  V  S  R  Q  F  N  *  T  Y  K  R  R  R  *  D  *  H  K  C  K  E  K  A  F  F  R  Q  R  Q   : G  N  R  D  C  A  M  *  *  E  S  G  W  *  K  D  Q  S  L  V  A  I  R  *  T  :  I  L  *  R  D  G  *  Q  L  *  F  F  Q  E  E  V  H   : S  *  L  Y  *  W  R  D  R  K  I  E  S  L  E  G  T  L  G  T  C  *  R  *  *  Y  V  R  R   : G  A  S  S  Q  R  *  C  S  S  F  G  K  :  S  *  E  E  K  T  *  E  C  *  T  I  T  K  A  *  N  G  C  F  T  *  K  :  Q  V  K  R  G  D  S  *  I  W  T  E  I  Q  G  *  T  Q  L  E  R  W  H  L  K  I  C  R  E  S  *  *  H  N  Q  Q  Q  V  C  G  S  I  Q  K  E  H  W  Q  I  S  *  Y  *  K  A  I  C  Q  V  *  R  C  *  *  *  Y  S  Q  I  Q  V  Q  A  R  Y  S  I  N  N  C  Q  Q  V  Q  A  R  N  S  *  S  C  Q  Q  V  Q  N  Q  N  P  P  K  W  W  Q  V  R  C  Q  W  F  G  E  A  K  I  *  F  I  K  G  *  R  E  W  E  P  E  G  K  S  N  *  L  S  K  N  P  *  W  Q  H  Q  G  E  T  V  *  C  I  K  G  T  T  E  *  A  Q  E  W  K  E  A  C  E  G  E  K  L  I  I  C  C  T  L  *  *  W  S  S  S  Y  L  H  S  W  T  H  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61839" stop="60997"/>
                    <exon start="60867" stop="60754"/>
                    <exon start="60581" stop="60453"/>
                    <exon start="59992" stop="59919"/>
                    <exon start="59759" stop="59708"/>
                    <exon start="59620" stop="59534"/>
                    <exon start="59461" stop="59424"/>
                    <exon start="58755" stop="58687"/>
                    <exon start="58591" stop="58087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1908</number_coding_nucleotides>
                  <number_encoded_amino_acids>636</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAESGRDEACLEDIEPAVNGSPKSITSNGGSLENVRLTSETESLMKAGAHDEVDLHDASKIPSESDDSRVEKSTKSEPKSMKSEPKSEQPSKKRGRKTVSSINSAESSHQAPEGSGKEIEKLQDHQNDQNKDDHSSASEDPVVEQSNLLEKEPETNQHSAPKESEEEVVDVAPPSQGQSLPEEIALKKGDLPMEDNSNQDGESKKEIEAGSDLEVKQVRRPLRKTPLEPCRKEKGGSTSDTEAKKLKQSGKNVDTKNKSQVGPSARNKEDSKKRGHGKASQETLPSQESPDRSVKHDEDNEEEIPRTTTKRKRSSSKGRGSRQVVQKSVPTPESPDNSTKHISDEDETDTSAKKKPSSGNDRVTETVQCDKNLVGRKIRVWWPLDELFYEGTVSNYDSSRKKFTVDYTDGETEKLNLLKERWELVEDDNMSEEEQVASADAAASESHKKKKPRNAEPSLKHEMDASPKSKSKEATAKSGQKSKGKLNLKDGTSKSAGKADDTTSSKSAAPSKRSTGKSVDTEKPSARSKDVSSSTPKSKSRQDTPSTTANKSKQETVKAANKSKTKTPQSGGKSGANGSEKLKSSSSKVKESGNQKEKATNSAKTPDGSTKEKLSSASKERQSEPKSGKKRARGKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65213" PGL_stop="66452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65213" e_stop="66452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="65213" e_stop="66452" e_length="1240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65213" stop="65835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65242" stop="65979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65466" stop="66135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65685" stop="66452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATGCCAAGGTTCATAATTAAGCTCACTTACCCCACCCCCTTCAAACCCAAAAATTTCCTAATGAAGAAGAAAGCTTTATTCACTTGTTGTTTTTATGTTTATGTATAAAATGTATGTACATAGTACTAGTGCATGAAGAAATTGAATGATGAATAATGACATTTTTTGTTTTCTTTAGCCTTGTTATCAGCATCTGAATCTCCTTCTTTCTCCCCTCTTCAACCCACCACCCACCCAACCTACCCACATCCTGACACCCTCCCTACCCCCTTCTCTGCAATATATCTGAATCTTTTTCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTGGGCTCTCTCTCTTTTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTGCATGATTCTTGCATTTTTTTTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAACCACCCTTTAAGTTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATTTTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTGGTTTAGATCTTGGTTGTGTATTACAGCTCTAGGGTTGTTGCCCTTTACCAGTAATATCTTGATTTGAGTGTTTTTTCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAGCACCATGTGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATCTGAGTCAGTAGACTCAGGAAGAGGCAATTCAGACTCAAACAGTCCGAATGCAAGCTCAAATTTAGGCCCTGGAAGGCCTAATAGTGTTCCAAGGAGGACTTCCTCAGTTGTGTTCCCAGCAAGTGTGATTGCAGGGATCGAGCCTTTGATTTCCTTCAAAGATGTTCCCAGCTCTGAAAAGATGAATCTTTTTATCAGTAAGTTAAGTCTCTGCTGTGTAGACTTTGATTTCAGGGACCCAACTAAGAATGTAGCAGAAAAGGAACTAAAAAGGGCTACATTATTTGAGCTTTTGGATTTTGTATCTGCTAATCCACCCAAATTTTCAGAACCTGCAATTCTTGCATTGTGTAAAACATGTGCTGTTAATTTGTTTCGGGTTTTCCCTCCTAATTATCGGTCTAATAATAGCCACGCCAGCGAAAATGATGATGATGAGCCTACTTTTGACCCTGCCTGGCCTCACTTGCAAA</gDNA_template>
            <first_frame> S  M  P  R  F  I  I  K  L  T  Y  P  T  P  F  K  P  K  N  F  L  M  K  K  K  A  L  F  T  C  C  F  Y  V  Y  V  *  N  V  C  T  *  Y  *  C  M  K  K  L  N  D  E  *  *  H  F  L  F  S  L  A  L  L  S  A  S  E  S  P  S  F  S  P  L  Q  P  T  T  H  P  T  Y  P  H  P  D  T  L  P  T  P  F  S  A  I  Y  L  N  L  F  H  V  M  Y  I  *  I  V  I  M  N  V  Y  E  I  W  A  L  S  L  F  I  *  R  I  Q  G  C  K  L  S  K  K  G  F  S  F  A  *  F  L  H  F  F  S  I  F  S  L  F  V  N  Q  D  L  N  H  P  L  S  *  F  E  E  R  F  D  F  S  F  F  L  L  K  I  M  A  P  P  F  C  G  L  A  *  S  L  Q  I  F  *  P  M  G  F  W  F  R  S  W  L  C  I  T  A  L  G  L  L  P  F  T  S  N  I  L  I  *  V  F  F  H  P  L  L  S  V  L  S  L  F  L  C  *  K  F  V  K  S  T  M  W  K  H  F  L  S  K  L  P  K  K  S  L  K  S  E  S  V  D  S  G  R  G  N  S  D  S  N  S  P  N  A  S  S  N  L  G  P  G  R  P  N  S  V  P  R  R  T  S  S  V  V  F  P  A  S  V  I  A  G  I  E  P  L  I  S  F  K  D  V  P  S  S  E  K  M  N  L  F  I  S  K  L  S  L  C  C  V  D  F  D  F  R  D  P  T  K  N  V  A  E  K  E  L  K  R  A  T  L  F  E  L  L  D  F  V  S  A  N  P  P  K  F  S  E  P  A  I  L  A  L  C  K  T  C  A  V  N  L  F  R  V  F  P  P  N  Y  R  S  N  N  S  H  A  S  E  N  D  D  D  E  P  T  F  D  P  A  W  P  H  L  Q  </first_frame>
            <second_frame>  P  C  Q  G  S  *  L  S  S  L  T  P  P  P  S  N  P  K  I  S  *  *  R  R  K  L  Y  S  L  V  V  F  M  F  M  Y  K  M  Y  V  H  S  T  S  A  *  R  N  *  M  M  N  N  D  I  F  C  F  L  *  P  C  Y  Q  H  L  N  L  L  L  S  P  L  F  N  P  P  P  T  Q  P  T  H  I  L  T  P  S  L  P  P  S  L  Q  Y  I  *  I  F  F  M  L  C  I  Y  K  *  L  *  *  M  C  M  R  S  G  L  S  L  F  L  F  K  E  S  K  V  V  N  *  A  K  K  A  S  A  L  H  D  S  C  I  F  F  Q  S  F  P  Y  L  *  I  K  I  *  T  T  L  *  V  S  L  R  K  D  L  I  F  L  S  S  C  *  R  *  W  H  P  H  F  V  V  *  L  K  V  C  R  F  F  S  Q  W  G  F  G  L  D  L  G  C  V  L  Q  L  *  G  C  C  P  L  P  V  I  S  *  F  E  C  F  F  T  L  F  Y  L  F  *  V  C  F  C  V  K  S  L  *  K  A  P  C  G  S  I  F  *  V  S  F  R  R  N  H  *  N  L  S  Q  *  T  Q  E  E  A  I  Q  T  Q  T  V  R  M  Q  A  Q  I  *  A  L  E  G  L  I  V  F  Q  G  G  L  P  Q  L  C  S  Q  Q  V  *  L  Q  G  S  S  L  *  F  P  S  K  M  F  P  A  L  K  R  *  I  F  L  S  V  S  *  V  S  A  V  *  T  L  I  S  G  T  Q  L  R  M  *  Q  K  R  N  *  K  G  L  H  Y  L  S  F  W  I  L  Y  L  L  I  H  P  N  F  Q  N  L  Q  F  L  H  C  V  K  H  V  L  L  I  C  F  G  F  S  L  L  I  I  G  L  I  I  A  T  P  A  K  M  M  M  M  S  L  L  L  T  L  P  G  L  T  C  K </second_frame>
            <third_frame>   H  A  K  V  H  N  *  A  H  L  P  H  P  L  Q  T  Q  K  F  P  N  E  E  E  S  F  I  H  L  L  F  L  C  L  C  I  K  C  M  Y  I  V  L  V  H  E  E  I  E  *  *  I  M  T  F  F  V  F  F  S  L  V  I  S  I  *  I  S  F  F  L  P  S  S  T  H  H  P  P  N  L  P  T  S  *  H  P  P  Y  P  L  L  C  N  I  S  E  S  F  S  C  Y  V  Y  I  N  S  Y  N  E  C  V  *  D  L  G  S  L  S  F  Y  L  K  N  P  R  L  *  I  E  Q  K  R  L  Q  L  C  M  I  L  A  F  F  F  N  L  F  P  I  C  K  S  R  S  E  P  P  F  K  L  V  *  G  K  I  *  F  F  F  L  L  A  E  D  N  G  T  P  I  L  W  F  S  L  K  F  A  D  F  L  A  N  G  V  L  V  *  I  L  V  V  Y  Y  S  S  R  V  V  A  L  Y  Q  *  Y  L  D  L  S  V  F  S  P  S  F  I  C  F  E  S  V  F  V  L  K  V  C  E  K  H  H  V  E  A  F  S  E  *  A  S  E  E  I  T  E  I  *  V  S  R  L  R  K  R  Q  F  R  L  K  Q  S  E  C  K  L  K  F  R  P  W  K  A  *  *  C  S  K  E  D  F  L  S  C  V  P  S  K  C  D  C  R  D  R  A  F  D  F  L  Q  R  C  S  Q  L  *  K  D  E  S  F  Y  Q  *  V  K  S  L  L  C  R  L  *  F  Q  G  P  N  *  E  C  S  R  K  G  T  K  K  G  Y  I  I  *  A  F  G  F  C  I  C  *  S  T  Q  I  F  R  T  C  N  S  C  I  V  *  N  M  C  C  *  F  V  S  G  F  P  S  *  L  S  V  *  *  *  P  R  Q  R  K  *  *  *  *  A  Y  F  *  P  C  L  A  S  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65915" stop="66451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFVKSTMWKHFLSKLPKKSLKSESVDSGRGNSDSNSPNASSNLGPGRPNSVPRRTSSVVFPASVIAGIEPLISFKDVPSSEKMNLFISKLSLCCVDFDFRDPTKNVAEKELKRATLFELLDFVSANPPKFSEPAILALCKTCAVNLFRVFPPNYRSNNSHASENDDDEPTFDPAWPHLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66611" PGL_stop="69115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66611" e_stop="67069"/>
            <exon e_start="68568" e_stop="69115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.795" e_score="0.965"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="66611" e_stop="67069" e_length="459"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.795">
            <gDNA_intron_boundary i_start="67070" i_stop="68567" i_length="1498"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="68568" e_stop="69115" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66611" stop="67039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66934" stop="67069"/>
              <exon start="68568" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66934" stop="67069"/>
              <exon start="68568" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATGGCAAGTTCATGGTTCACAGGCCTTATATAAGGAAGAGTATAAGCAATGTGTTTTACCGTGTTGTGTTCGAATCGGAGAAACATAATGGGATTGCTGAACTTTTGGAGATATTTGGAAGTGTGGTTACAGGGTTCGCTCTGCCATTGAAAGAGGAGCATAAGATCTTTTTGTCAAGGACCTTGATTCCTTTGCACAAGCCAAAATCCTTGGGGATTTACTTTCAACAGTTATCATATTGTATTAACCAGTTCATAGAGAAAGATCCCAAATTGGCTAGCACTGTGATTAGGGGTTTGTTGAAGTACTGGCCTATCACAAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAACATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATCGGTTGCTGCATCAATAGTTACCATTTTCAG : GTTGCTGAAAGGGCTCTCTTCCTTTGGAATAATGACCAAATTGTCAATTTGATTGCACATAACCGGCACGTGATTCTCCCGATTATATTCCCAGCTGTGGAAAGCAATACTCAGAACCACTGGAATCATGCTGTGCAGAACTTGAGTCTAAATGTAAGAAGGATGTTCTCCGAAATGGATGATGTACTTTTCCTTGCTTGTCATTCTCATTACAAGGAAGAACAGGAGAAAATAGACTTGGAATCTGAAAAACGGAAGGAAGCATGGGAACAGCTGGAGACTGCAGCTAGTCTACGTCCACCTGTAGCTGGAAACATTGCTGTCCTGGTAACGCCTTTAGCAACTTCAATCACTTGCTAAGAGGTGATGACTCCACTCTATCCTTGTCCCCGTGTTTTTCTGTGTATGTTCCACGCAATCTAGGAATCATGGATGGAAAATGGCTGTTGTCTGGAGCAGGTTTTTGAAGATCAACCCGATTAACAGCCTTATCTCTGTTGTAACCTTAGTCCTGCAACTGTGTTGAGAGCGCGAATGGGGGGGGGGGG</gDNA_template>
            <first_frame> I  Y  G  K  F  M  V  H  R  P  Y  I  R  K  S  I  S  N  V  F  Y  R  V  V  F  E  S  E  K  H  N  G  I  A  E  L  L  E  I  F  G  S  V  V  T  G  F  A  L  P  L  K  E  E  H  K  I  F  L  S  R  T  L  I  P  L  H  K  P  K  S  L  G  I  Y  F  Q  Q  L  S  Y  C  I  N  Q  F  I  E  K  D  P  K  L  A  S  T  V  I  R  G  L  L  K  Y  W  P  I  T  S  T  Q  K  E  V  M  F  L  S  E  L  E  E  I  L  E  V  I  N  M  A  E  F  Q  K  V  M  V  P  L  F  W  R  I  G  C  C  I  N  S  Y  H  F  Q  :  V  A  E  R  A  L  F  L  W  N  N  D  Q  I  V  N  L  I  A  H  N  R  H  V  I  L  P  I  I  F  P  A  V  E  S  N  T  Q  N  H  W  N  H  A  V  Q  N  L  S  L  N  V  R  R  M  F  S  E  M  D  D  V  L  F  L  A  C  H  S  H  Y  K  E  E  Q  E  K  I  D  L  E  S  E  K  R  K  E  A  W  E  Q  L  E  T  A  A  S  L  R  P  P  V  A  G  N  I  A  V  L  V  T  P  L  A  T  S  I  T  C  *  E  V  M  T  P  L  Y  P  C  P  R  V  F  L  C  M  F  H  A  I  *  E  S  W  M  E  N  G  C  C  L  E  Q  V  F  E  D  Q  P  D  *  Q  P  Y  L  C  C  N  L  S  P  A  T  V  L  R  A  R  M  G  G  G   </first_frame>
            <second_frame>  F  M  A  S  S  W  F  T  G  L  I  *  G  R  V  *  A  M  C  F  T  V  L  C  S  N  R  R  N  I  M  G  L  L  N  F  W  R  Y  L  E  V  W  L  Q  G  S  L  C  H  *  K  R  S  I  R  S  F  C  Q  G  P  *  F  L  C  T  S  Q  N  P  W  G  F  T  F  N  S  Y  H  I  V  L  T  S  S  *  R  K  I  P  N  W  L  A  L  *  L  G  V  C  *  S  T  G  L  S  Q  A  P  K  R  R  *  C  F  *  V  S  W  K  K  F  W  K  L  L  T  W  L  S  S  K  K  *  W  F  P  C  S  G  G  S  V  A  A  S  I  V  T  I  F  R :   L  L  K  G  L  S  S  F  G  I  M  T  K  L  S  I  *  L  H  I  T  G  T  *  F  S  R  L  Y  S  Q  L  W  K  A  I  L  R  T  T  G  I  M  L  C  R  T  *  V  *  M  *  E  G  C  S  P  K  W  M  M  Y  F  S  L  L  V  I  L  I  T  R  K  N  R  R  K  *  T  W  N  L  K  N  G  R  K  H  G  N  S  W  R  L  Q  L  V  Y  V  H  L  *  L  E  T  L  L  S  W  *  R  L  *  Q  L  Q  S  L  A  K  R  *  *  L  H  S  I  L  V  P  V  F  F  C  V  C  S  T  Q  S  R  N  H  G  W  K  M  A  V  V  W  S  R  F  L  K  I  N  P  I  N  S  L  I  S  V  V  T  L  V  L  Q  L  C  *  E  R  E  W  G  G  G  </second_frame>
            <third_frame>   L  W  Q  V  H  G  S  Q  A  L  Y  K  E  E  Y  K  Q  C  V  L  P  C  C  V  R  I  G  E  T  *  W  D  C  *  T  F  G  D  I  W  K  C  G  Y  R  V  R  S  A  I  E  R  G  A  *  D  L  F  V  K  D  L  D  S  F  A  Q  A  K  I  L  G  D  L  L  S  T  V  I  I  L  Y  *  P  V  H  R  E  R  S  Q  I  G  *  H  C  D  *  G  F  V  E  V  L  A  Y  H  K  H  P  K  G  G  D  V  F  E  *  A  G  R  N  F  G  S  Y  *  H  G  *  V  P  K  S  D  G  S  L  V  L  A  D  R  L  L  H  Q  *  L  P  F  S   : G  C  *  K  G  S  L  P  L  E  *  *  P  N  C  Q  F  D  C  T  *  P  A  R  D  S  P  D  Y  I  P  S  C  G  K  Q  Y  S  E  P  L  E  S  C  C  A  E  L  E  S  K  C  K  K  D  V  L  R  N  G  *  C  T  F  P  C  L  S  F  S  L  Q  G  R  T  G  E  N  R  L  G  I  *  K  T  E  G  S  M  G  T  A  G  D  C  S  *  S  T  S  T  C  S  W  K  H  C  C  P  G  N  A  F  S  N  F  N  H  L  L  R  G  D  D  S  T  L  S  L  S  P  C  F  S  V  Y  V  P  R  N  L  G  I  M  D  G  K  W  L  L  S  G  A  G  F  *  R  S  T  R  L  T  A  L  S  L  L  *  P  *  S  C  N  C  V  E  S  A  N  G  G  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66611" stop="67069"/>
                    <exon start="68568" stop="68927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYGKFMVHRPYIRKSISNVFYRVVFESEKHNGIAELLEIFGSVVTGFALPLKEEHKIFLSRTLIPLHKPKSLGIYFQQLSYCINQFIEKDPKLASTVIRGLLKYWPITSTQKEVMFLSELEEILEVINMAEFQKVMVPLFWRIGCCINSYHFQVAERALFLWNNDQIVNLIAHNRHVILPIIFPAVESNTQNHWNHAVQNLSLNVRRMFSEMDDVLFLACHSHYKEEQEKIDLESEKRKEAWEQLETAASLRPPVAGNIAVLVTPLATSITC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="82434" PGL_stop="73814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82434" e_stop="82291"/>
            <exon e_start="81130" e_stop="81050"/>
            <exon e_start="79563" e_stop="79211"/>
            <exon e_start="79021" e_stop="78745"/>
            <exon e_start="77628" e_stop="77495"/>
            <exon e_start="77216" e_stop="77124"/>
            <exon e_start="76279" e_stop="76146"/>
            <exon e_start="75820" e_stop="75745"/>
            <exon e_start="75019" e_stop="74943"/>
            <exon e_start="74855" e_stop="74822"/>
            <exon e_start="74739" e_stop="74590"/>
            <exon e_start="74504" e_stop="74370"/>
            <exon e_start="74288" e_stop="73814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.711" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.784" acc_prob="0.965" e_score="0.971"/>
          <exon-intron don_prob="0.997" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.527" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82434" e_stop="82291" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.958">
            <gDNA_intron_boundary i_start="82290" i_stop="81131" i_length="1160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81130" e_stop="81050" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81049" i_stop="79564" i_length="1486"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79563" e_stop="79211" e_length="353"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.970">
            <gDNA_intron_boundary i_start="79210" i_stop="79022" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79021" e_stop="78745" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78744" i_stop="77629" i_length="1116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77628" e_stop="77495" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.973">
            <gDNA_intron_boundary i_start="77494" i_stop="77217" i_length="278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77216" e_stop="77124" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.962" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77123" i_stop="76280" i_length="844"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76279" e_stop="76146" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76145" i_stop="75821" i_length="325"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75820" e_stop="75745" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.896" acc_prob="0.711">
            <gDNA_intron_boundary i_start="75744" i_stop="75020" i_length="725"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75019" e_stop="74943" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.893">
            <gDNA_intron_boundary i_start="74942" i_stop="74856" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="74855" e_stop="74822" e_length="34"/>
          </exon>
          <intron i_serial="10" don_prob="0.784" acc_prob="0.965">
            <gDNA_intron_boundary i_start="74821" i_stop="74740" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="74739" e_stop="74590" e_length="150"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.949">
            <gDNA_intron_boundary i_start="74589" i_stop="74505" i_length="85"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="74504" e_stop="74370" e_length="135"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.527">
            <gDNA_intron_boundary i_start="74369" i_stop="74289" i_length="81"/>
          </intron>
          <exon e_serial="13" e_score="0.985">
            <gDNA_exon_boundary e_start="74288" e_stop="73814" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82434" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82434" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82434" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82432" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="79003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82431" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82431" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82427" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82425" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82417" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78745"/>
              <exon start="77628" stop="77495"/>
              <exon start="77216" stop="77124"/>
              <exon start="76279" stop="76146"/>
              <exon start="75820" stop="75745"/>
              <exon start="75019" stop="74943"/>
              <exon start="74855" stop="74822"/>
              <exon start="74739" stop="74590"/>
              <exon start="74504" stop="74370"/>
              <exon start="74288" stop="73814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82339" stop="82291"/>
              <exon start="81130" stop="81050"/>
              <exon start="79563" stop="79211"/>
              <exon start="79021" stop="78766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCCACCCACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAGAAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGCTGTTAATAATGCTTA : GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTATATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAG : TTGTAGCTCTGACAATTGGCATATCACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGCCTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCACCTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAATCCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAACAGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACATGAATTGCATCAATGGAAGCAAATTTCAG : GTTAAGAAATTCTCTGATAAGAGGAATTCAAAGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGATTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACTTCAAGGACCACCCATTTACTCAGCCAAGTGAATATATCACCGCCGCTCAAAGTGGTTTAGTTGATCTTATGCCTGTGAATAGGAGTTCATGTAATGACATTACCCTCCAGACTACAACACCAAAAG : ATGAAAGCAAGGTTTGCTTGAAACAGGAAGGCTCCAATTCGCTTAGTATTGCAGATATAGATTCAAAACACAAGGATCCACTAATGTGTAGTCTGTATGCTCCTGATATATATAACAATTTGCAAGCCATGGAG : CTTGACCGGCGGCCTTCCTTTAATTATATGGAAAAGCTTCAGCGGGACATTAACAAGGGTATGCGAAGTATTCTTATTGATTGGCTTGTGGAG : GTATCTGAAGAATATAGGCTGGTTCCGGACACTCTTTACCTGACTGTACATCTTATTGATAGGTTCCTTTCTGAGCATTACATTGAAAAACAAAAACTGCAGCTGCTTGGAGTTACCTGCATGCTAATTGCTTC : CAAATATGAAGAAATTTGTGCACCTCGTGTGGAAGAATTTTGCTTTATTACAGACAACACTTACTCGAAAGAAGAG : GTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGGGCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAG : GAGATTCGTTCAAGCATCACAAGCTTCTTATGAG : GTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGTTAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTGTATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGG : AATTCAACTTTGGAGCACTACACTACATATAAGGCGTCAGATCTGAAAACTACAGTTCTTTTGCTGCAAGATTTACAGATGAACACCAGTGGAAGCACTCTGAATGCCATCCGTGAAAAGTATAAACAACCAAAG : TTCAAGTCCGTGGCAACTTTATCGTCTCCAAAACCAGTCCAATCACTGTTCTAGGAAATGCTGATTTTAAGTCTCGGTGGCCAATCCATGTTTGGCAGATCCAGTGTCACTTTTTCAAGCGAAGGAACATTAATCTTTAACATACAATAATTCATCCTTCCTGGAAAGAGACACATTCTTTTCAACCCTCTTTCGAATTTTAACCACATCTATCATCCTACCATGGCCCGTCAGATGATACAGAAAGCTGTAGATTTGAATGAAGTGGATGCACTAAGTTAAAAAGTAATGGCAATATGTAAGTAACTTCACAGCACCTGGTTAGCTTCTTGCTATCATGTATATGAAGCTGTTTGAGAGCTCTTCTTGTTAAAATGGTTCCAAATTTGACGTTTCTATTCATTAAGCGCAATAAATCCTTTTCCATTCTGGACGAGATACAAATTGTTTAAGTCTATCAAGCTTACATAACTTT</gDNA_template>
            <first_frame> P  P  P  T  P  F  G  T  T  Q  T  S  Y  I  D  C  M  T  D  R  R  R  *  K  P  *  L  C  N  R  G  T  A  V  E  R  C  C  G  Q  L  M  S  C  *  *  C  L  :  A  R  P  *  F  K  S  T  V  T  V  A  P  Y  L  Y  K  A  L  E  L  W  W  K  T  M  Q  :  L  *  L  *  Q  L  A  Y  H  H  L  G  Q  *  G  M  Q  L  W  Q  L  D  L  L  I  L  K  C  L  L  C  E  S  Q  E  H  G  Q  K  P  W  V  H  Q  E  D  Y  H  L  Y  T  H  L  S  D  R  I  R  N  R  D  L  *  H  K  E  Q  N  P  K  D  Q  P  Q  M  R  T  N  Q  L  I  L  P  V  L  L  L  N  S  L  S  E  G  L  F  S  G  M  S  L  M  C  F  V  K  I  R  T  *  I  A  S  M  E  A  N  F  R :   L  R  N  S  L  I  R  G  I  Q  R  *  H  L  L  F  W  *  K  S  L  S  L  K  I  E  K  R  V  *  L  K  K  Q  K  W  *  R  L  R  N  H  K  N  T  V  H  K  H  T  S  R  T  T  H  L  L  S  Q  V  N  I  S  P  P  L  K  V  V  *  L  I  L  C  L  *  I  G  V  H  V  M  T  L  P  S  R  L  Q  H  Q  K  :  M  K  A  R  F  A  *  N  R  K  A  P  I  R  L  V  L  Q  I  *  I  Q  N  T  R  I  H  *  C  V  V  C  M  L  L  I  Y  I  T  I  C  K  P  W  S :   L  T  G  G  L  P  L  I  I  W  K  S  F  S  G  T  L  T  R  V  C  E  V  F  L  L  I  G  L  W  R :   Y  L  K  N  I  G  W  F  R  T  L  F  T  *  L  Y  I  L  L  I  G  S  F  L  S  I  T  L  K  N  K  N  C  S  C  L  E  L  P  A  C  *  L  L   : P  N  M  K  K  F  V  H  L  V  W  K  N  F  A  L  L  Q  T  T  L  T  R  K  K  R :   *  *  E  W  K  V  W  F  *  I  F  W  A  F  N  L  L  L  R  P  P  K  S  S  *   : G  D  S  F  K  H  H  K  L  L  M  R :   F  P  L  L  N  W  N  S  W  Q  T  I  *  Q  S  *  H  *  L  N  I  V  F  S  S  F  F  H  L  L  L  L  H  Q  L  Y  F  *  P  D  G  H  L  I  N  L  T  T  H  G :   I  Q  L  W  S  T  T  L  H  I  R  R  Q  I  *  K  L  Q  F  F  C  C  K  I  Y  R  *  T  P  V  E  A  L  *  M  P  S  V  K  S  I  N  N  Q  S :   S  S  P  W  Q  L  Y  R  L  Q  N  Q  S  N  H  C  S  R  K  C  *  F  *  V  S  V  A  N  P  C  L  A  D  P  V  S  L  F  Q  A  K  E  H  *  S  L  T  Y  N  N  S  S  F  L  E  R  D  T  F  F  S  T  L  F  R  I  L  T  T  S  I  I  L  P  W  P  V  R  *  Y  R  K  L  *  I  *  M  K  W  M  H  *  V  K  K  *  W  Q  Y  V  S  N  F  T  A  P  G  *  L  L  A  I  M  Y  M  K  L  F  E  S  S  S  C  *  N  G  S  K  F  D  V  S  I  H  *  A  Q  *  I  L  F  H  S  G  R  D  T  N  C  L  S  L  S  S  L  H  N  F </first_frame>
            <second_frame>  P  H  P  P  L  L  E  P  H  R  R  A  T  L  I  V  *  P  I  G  E  G  R  N  P  S  S  A  I  E  A  P  P  *  N  G  V  A  G  S  S  *  A  V  N  N  A  * :   L  V  P  D  S  R  V  Q  *  Q  L  L  L  I  Y  I  K  L  *  N  C  G  G  R  Q  C  S :   C  S  S  D  N  W  H  I  T  T  W  V  N  E  E  C  N  Y  G  N  W  I  F  *  S  *  S  A  Y  Y  A  N  H  K  S  T  G  K  N  L  G  F  I  R  R  T  T  T  S  T  P  I  C  Q  T  G  *  E  T  G  T  C  N  T  R  N  K  I  Q  K  T  S  P  R  *  E  Q  T  S  *  F  F  Q  Y  C  F  S  T  A  *  A  K  G  C  S  Q  G  C  H  *  C  A  L  *  K  S  V  H  E  L  H  Q  W  K  Q  I  S   : G  *  E  I  L  *  *  E  E  F  K  G  D  T  C  S  F  G  E  K  A  *  A  *  R  *  K  R  E  C  D  *  R  S  K  N  G  K  G  *  G  I  T  R  T  L  F  T  S  T  L  Q  G  P  P  I  Y  S  A  K  *  I  Y  H  R  R  S  K  W  F  S  *  S  Y  A  C  E  *  E  F  M  *  *  H  Y  P  P  D  Y  N  T  K  R :   *  K  Q  G  L  L  E  T  G  R  L  Q  F  A  *  Y  C  R  Y  R  F  K  T  Q  G  S  T  N  V  *  S  V  C  S  *  Y  I  *  Q  F  A  S  H  G   : A  *  P  A  A  F  L  *  L  Y  G  K  A  S  A  G  H  *  Q  G  Y  A  K  Y  S  Y  *  L  A  C  G   : G  I  *  R  I  *  A  G  S  G  H  S  L  P  D  C  T  S  Y  *  *  V  P  F  *  A  L  H  *  K  T  K  T  A  A  A  W  S  Y  L  H  A  N  C  F  :  Q  I  *  R  N  L  C  T  S  C  G  R  I  L  L  Y  Y  R  Q  H  L  L  E  R  R   : G  S  K  N  G  K  S  G  S  E  F  F  G  L  S  T  C  C  S  D  H  Q  K  V  P  E  :  E  I  R  S  S  I  T  S  F  L  *   : G  S  L  C  *  T  G  I  H  G  K  L  F  S  R  V  N  T  S  *  I  *  F  S  Q  V  S  S  I  C  Y  C  C  I  S  C  I  S  S  Q  M  D  T  *  S  I  *  P  P  M   : E  F  N  F  G  A  L  H  Y  I  *  G  V  R  S  E  N  Y  S  S  F  A  A  R  F  T  D  E  H  Q  W  K  H  S  E  C  H  P  *  K  V  *  T  T  K   : V  Q  V  R  G  N  F  I  V  S  K  T  S  P  I  T  V  L  G  N  A  D  F  K  S  R  W  P  I  H  V  W  Q  I  Q  C  H  F  F  K  R  R  N  I  N  L  *  H  T  I  I  H  P  S  W  K  E  T  H  S  F  Q  P  S  F  E  F  *  P  H  L  S  S  Y  H  G  P  S  D  D  T  E  S  C  R  F  E  *  S  G  C  T  K  L  K  S  N  G  N  M  *  V  T  S  Q  H  L  V  S  F  L  L  S  C  I  *  S  C  L  R  A  L  L  V  K  M  V  P  N  L  T  F  L  F  I  K  R  N  K  S  F  S  I  L  D  E  I  Q  I  V  *  V  Y  Q  A  Y  I  T   </second_frame>
            <third_frame>   P  T  H  P  F  W  N  H  T  D  E  L  H  *  L  Y  D  R  S  E  K  V  E  T  L  A  L  Q  S  R  H  R  R  R  T  V  L  R  A  A  H  E  L  L  I  M  L   : S  S  S  L  I  Q  E  Y  S  D  S  C  S  L  F  I  *  S  S  R  I  V  V  E  D  N  A   : V  V  A  L  T  I  G  I  S  P  P  G  S  M  R  N  A  T  M  A  T  G  S  S  N  L  K  V  P  T  M  R  I  T  R  A  R  A  K  T  L  G  S  S  G  G  L  P  P  L  H  P  S  V  R  Q  D  K  K  Q  G  L  V  T  Q  G  T  K  S  K  R  P  A  P  D  E  N  K  P  A  N  S  S  S  T  A  S  Q  Q  P  K  R  R  A  V  L  R  D  V  T  N  V  L  C  E  N  P  Y  M  N  C  I  N  G  S  K  F  Q  :  V  K  K  F  S  D  K  R  N  S  K  V  T  P  A  L  L  V  K  K  P  E  L  E  D  R  K  E  S  V  I  E  E  A  K  M  V  K  V  E  E  S  Q  E  H  C  S  Q  A  H  F  K  D  H  P  F  T  Q  P  S  E  Y  I  T  A  A  Q  S  G  L  V  D  L  M  P  V  N  R  S  S  C  N  D  I  T  L  Q  T  T  T  P  K   : D  E  S  K  V  C  L  K  Q  E  G  S  N  S  L  S  I  A  D  I  D  S  K  H  K  D  P  L  M  C  S  L  Y  A  P  D  I  Y  N  N  L  Q  A  M  E  :  L  D  R  R  P  S  F  N  Y  M  E  K  L  Q  R  D  I  N  K  G  M  R  S  I  L  I  D  W  L  V  E  :  V  S  E  E  Y  R  L  V  P  D  T  L  Y  L  T  V  H  L  I  D  R  F  L  S  E  H  Y  I  E  K  Q  K  L  Q  L  L  G  V  T  C  M  L  I  A  S :   K  Y  E  E  I  C  A  P  R  V  E  E  F  C  F  I  T  D  N  T  Y  S  K  E  E  :  V  V  R  M  E  S  L  V  L  N  F  L  G  F  Q  L  A  A  P  T  T  K  K  F  L  R :   R  F  V  Q  A  S  Q  A  S  Y  E  :  V  P  S  V  E  L  E  F  M  A  N  Y  L  A  E  L  T  L  A  E  Y  S  F  L  K  F  L  P  S  V  T  A  A  S  A  V  F  L  A  R  W  T  L  D  Q  S  N  H  P  W  :  N  S  T  L  E  H  Y  T  T  Y  K  A  S  D  L  K  T  T  V  L  L  L  Q  D  L  Q  M  N  T  S  G  S  T  L  N  A  I  R  E  K  Y  K  Q  P  K  :  F  K  S  V  A  T  L  S  S  P  K  P  V  Q  S  L  F  *  E  M  L  I  L  S  L  G  G  Q  S  M  F  G  R  S  S  V  T  F  S  S  E  G  T  L  I  F  N  I  Q  *  F  I  L  P  G  K  R  H  I  L  F  N  P  L  S  N  F  N  H  I  Y  H  P  T  M  A  R  Q  M  I  Q  K  A  V  D  L  N  E  V  D  A  L  S  *  K  V  M  A  I  C  K  *  L  H  S  T  W  L  A  S  C  Y  H  V  Y  E  A  V  *  E  L  F  L  L  K  W  F  Q  I  *  R  F  Y  S  L  S  A  I  N  P  F  P  F  W  T  R  Y  K  L  F  K  S  I  K  L  T  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81080" stop="81050"/>
                    <exon start="79563" stop="79211"/>
                    <exon start="79021" stop="78745"/>
                    <exon start="77628" stop="77495"/>
                    <exon start="77216" stop="77124"/>
                    <exon start="76279" stop="76146"/>
                    <exon start="75820" stop="75745"/>
                    <exon start="75019" stop="74943"/>
                    <exon start="74855" stop="74822"/>
                    <exon start="74739" stop="74590"/>
                    <exon start="74504" stop="74370"/>
                    <exon start="74288" stop="74235"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRIVVEDNAVVALTIGISPPGSMRNATMATGSSNLKVPTMRITRARAKTLGSSGGLPPLHPSVRQDKKQGLVTQGTKSKRPAPDENKPANSSSTASQQPKRRAVLRDVTNVLCENPYMNCINGSKFQVKKFSDKRNSKVTPALLVKKPELEDRKESVIEEAKMVKVEESQEHCSQAHFKDHPFTQPSEYITAAQSGLVDLMPVNRSSCNDITLQTTTPKDESKVCLKQEGSNSLSIADIDSKHKDPLMCSLYAPDIYNNLQAMELDRRPSFNYMEKLQRDINKGMRSILIDWLVEVSEEYRLVPDTLYLTVHLIDRFLSEHYIEKQKLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKEEVVRMESLVLNFLGFQLAAPTTKKFLRRFVQASQASYEVPSVELEFMANYLAELTLAEYSFLKFLPSVTAASAVFLARWTLDQSNHPWNSTLEHYTTYKASDLKTTVLLLQDLQMNTSGSTLNAIREKYKQPKFKSVATLSSPKPVQSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75181" e_stop="74943"/>
            <exon e_start="74855" e_stop="74822"/>
            <exon e_start="74739" e_stop="74590"/>
            <exon e_start="74504" e_stop="74476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.784" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75181" e_stop="74943" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.893">
            <gDNA_intron_boundary i_start="74942" i_stop="74856" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74855" e_stop="74822" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.784" acc_prob="0.965">
            <gDNA_intron_boundary i_start="74821" i_stop="74740" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74739" e_stop="74590" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.949">
            <gDNA_intron_boundary i_start="74589" i_stop="74505" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74504" e_stop="74476" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75181" stop="74943"/>
              <exon start="74855" stop="74822"/>
              <exon start="74739" stop="74590"/>
              <exon start="74504" stop="74476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGCTTTCCTTTCTCTTTTATGATATCTTGGATGCATACTTTTTTCCTACTTGAGTAATGATCTGAACATTTCCCAAATGTTTTCCTTTGTCTTCTATATACGACTTGAAGTTCCCTGTGGATGTGAAAAGGCTAATTACTAATTGCATATCCATTGTCAGGTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGGGCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAG : GAGATTCGTTCAAGCATCACAAGCTTCTTATGAG : GTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGTTAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTGTATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGG : AATTCAACTTTGGAGCACTACACTACATA</gDNA_template>
            <first_frame> *  A  F  L  S  L  L  *  Y  L  G  C  I  L  F  S  Y  L  S  N  D  L  N  I  S  Q  M  F  S  F  V  F  Y  I  R  L  E  V  P  C  G  C  E  K  A  N  Y  *  L  H  I  H  C  Q  V  V  R  M  E  S  L  V  L  N  F  L  G  F  Q  L  A  A  P  T  T  K  K  F  L  R :   R  F  V  Q  A  S  Q  A  S  Y  E  :  V  P  S  V  E  L  E  F  M  A  N  Y  L  A  E  L  T  L  A  E  Y  S  F  L  K  F  L  P  S  V  T  A  A  S  A  V  F  L  A  R  W  T  L  D  Q  S  N  H  P  W  :  N  S  T  L  E  H  Y  T  T   </first_frame>
            <second_frame>  E  L  S  F  L  F  Y  D  I  L  D  A  Y  F  F  P  T  *  V  M  I  *  T  F  P  K  C  F  P  L  S  S  I  Y  D  L  K  F  P  V  D  V  K  R  L  I  T  N  C  I  S  I  V  R  *  *  E  W  K  V  W  F  *  I  F  W  A  F  N  L  L  L  R  P  P  K  S  S  *   : G  D  S  F  K  H  H  K  L  L  M  R :   F  P  L  L  N  W  N  S  W  Q  T  I  *  Q  S  *  H  *  L  N  I  V  F  S  S  F  F  H  L  L  L  L  H  Q  L  Y  F  *  P  D  G  H  L  I  N  L  T  T  H  G :   I  Q  L  W  S  T  T  L  H  </second_frame>
            <third_frame>   S  F  P  F  S  F  M  I  S  W  M  H  T  F  F  L  L  E  *  *  S  E  H  F  P  N  V  F  L  C  L  L  Y  T  T  *  S  S  L  W  M  *  K  G  *  L  L  I  A  Y  P  L  S  G  S  K  N  G  K  S  G  S  E  F  F  G  L  S  T  C  C  S  D  H  Q  K  V  P  E  :  E  I  R  S  S  I  T  S  F  L  *   : G  S  L  C  *  T  G  I  H  G  K  L  F  S  R  V  N  T  S  *  I  *  F  S  Q  V  S  S  I  C  Y  C  C  I  S  C  I  S  S  Q  M  D  T  *  S  I  *  P  P  M   : E  F  N  F  G  A  L  H  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75037" stop="74943"/>
                    <exon start="74855" stop="74822"/>
                    <exon start="74739" stop="74590"/>
                    <exon start="74504" stop="74478"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHIHCQVVRMESLVLNFLGFQLAAPTTKKFLRRFVQASQASYEVPSVELEFMANYLAELTLAEYSFLKFLPSVTAASAVFLARWTLDQSNHPWNSTLEHYTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="84212" PGL_stop="83709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84212" e_stop="83709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="84212" e_stop="83709" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84212" stop="83709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCAGTGTTAGCTGTACACGGGTTTATGATGTTTCTGGCTTGGGGAATATTGCTGCCAGGTGGTATTTTAGCTGCTAGATATTTGAAACATATCAAGGGAGATGGGTGGTTTCAGATTCATGTTTATCTACAGTATTCCGGATTATCGATTGTCTTCCTTGGTTTTCTCTTTGCTGTAGCCGAACTTCGCGGTTTGAGTTTCAGCTCCCTTCATGTTAAGTTTGGAATGCTGGCCATAGTTCTTGCTATTGCACAACCCATTAATGCATACCTACGACCTAAGAAACCTGGAGCAGGAGAGGAGGTTTCTTCAAACCGGCGTGTTTGGGAGTATATCCATGTCATTGTGGGCAGGGGTGCCATTGTTGTCGGCATTGCAGCTCTTATAACAGGAATGAAGCATCTAGGAGAGAGGTACGGTGATGAAGATGTTCATAGGCTGATGTGGGCTCTAATTCTGTGGATTCTTGTTGGCGTTTTGACAGTGATGTATCTGGAGTATC</gDNA_template>
            <first_frame> G  Q  C  *  L  Y  T  G  L  *  C  F  W  L  G  E  Y  C  C  Q  V  V  F  *  L  L  D  I  *  N  I  S  R  E  M  G  G  F  R  F  M  F  I  Y  S  I  P  D  Y  R  L  S  S  L  V  F  S  L  L  *  P  N  F  A  V  *  V  S  A  P  F  M  L  S  L  E  C  W  P  *  F  L  L  L  H  N  P  L  M  H  T  Y  D  L  R  N  L  E  Q  E  R  R  F  L  Q  T  G  V  F  G  S  I  S  M  S  L  W  A  G  V  P  L  L  S  A  L  Q  L  L  *  Q  E  *  S  I  *  E  R  G  T  V  M  K  M  F  I  G  *  C  G  L  *  F  C  G  F  L  L  A  F  *  Q  *  C  I  W  S  I </first_frame>
            <second_frame>  A  S  V  S  C  T  R  V  Y  D  V  S  G  L  G  N  I  A  A  R  W  Y  F  S  C  *  I  F  E  T  Y  Q  G  R  W  V  V  S  D  S  C  L  S  T  V  F  R  I  I  D  C  L  P  W  F  S  L  C  C  S  R  T  S  R  F  E  F  Q  L  P  S  C  *  V  W  N  A  G  H  S  S  C  Y  C  T  T  H  *  C  I  P  T  T  *  E  T  W  S  R  R  G  G  F  F  K  P  A  C  L  G  V  Y  P  C  H  C  G  Q  G  C  H  C  C  R  H  C  S  S  Y  N  R  N  E  A  S  R  R  E  V  R  *  *  R  C  S  *  A  D  V  G  S  N  S  V  D  S  C  W  R  F  D  S  D  V  S  G  V   </second_frame>
            <third_frame>   P  V  L  A  V  H  G  F  M  M  F  L  A  W  G  I  L  L  P  G  G  I  L  A  A  R  Y  L  K  H  I  K  G  D  G  W  F  Q  I  H  V  Y  L  Q  Y  S  G  L  S  I  V  F  L  G  F  L  F  A  V  A  E  L  R  G  L  S  F  S  S  L  H  V  K  F  G  M  L  A  I  V  L  A  I  A  Q  P  I  N  A  Y  L  R  P  K  K  P  G  A  G  E  E  V  S  S  N  R  R  V  W  E  Y  I  H  V  I  V  G  R  G  A  I  V  V  G  I  A  A  L  I  T  G  M  K  H  L  G  E  R  Y  G  D  E  D  V  H  R  L  M  W  A  L  I  L  W  I  L  V  G  V  L  T  V  M  Y  L  E  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84210" stop="83710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLAVHGFMMFLAWGILLPGGILAARYLKHIKGDGWFQIHVYLQYSGLSIVFLGFLFAVAELRGLSFSSLHVKFGMLAIVLAIAQPINAYLRPKKPGAGEEVSSNRRVWEYIHVIVGRGAIVVGIAALITGMKHLGERYGDEDVHRLMWALILWILVGVLTVMYLEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="85337" PGL_stop="84624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85337" e_stop="84624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="85337" e_stop="84624" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85337" stop="84624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</gDNA_template>
            <first_frame> H  *  S  P  W  I  L  S  M  I  C  N  *  I  K  M  L  Q  *  E  *  Y  G  L  *  V  *  *  N  L  R  I  V  F  G  L  F  I  S  H  K  I  M  V  V  A  M  G  T  *  H  *  M  S  R  N  I  L  M  I  A  W  G  R  W  M  Q  K  I  N  K  I  K  T  L  S  L  Q  I  K  K  D  H  L  L  F  Q  Q  V  Q  L  C  S  T  Q  I  L  Q  T  L  L  K  F  S  T  L  T  R  K  R  H  P  F  S  G  *  R  G  V  F  K  *  S  F  Q  F  R  L  G  M  M  L  P  S  I  *  P  Q  I  H  L  V  E  M  L  H  *  G  I  C  Q  R  P  S  T  L  G  D  L  K  H  K  E  F  K  P  L  P  Q  N  *  F  G  L  L  T  G  T  R  Q  I  *  F  T  I  S  L  Y  M  L  R  K  W  G  G  K  F  K  W  L  M  Q  A  Y  L  I  C  I  T  A  A  *  F  W  M  I  S  R  L  L  S  F  G  R  W  L  K  I  Q  S  P  L  Q  L  E  G  R  K </first_frame>
            <second_frame>  I  E  V  H  G  Y  *  V  *  F  A  I  E  S  K  C  Y  N  E  S  D  M  G  F  R  F  D  K  T  S  G  *  S  S  A  F  L  S  P  T  K  S  W  W  *  L  W  A  L  D  T  E  C  L  G  T  Y  *  *  L  L  G  A  A  G  C  R  R  *  T  R  S  R  P  C  H  C  R  *  K  R  T  T  C  C  F  N  R  S  S  C  V  L  P  K  S  S  K  P  F  *  S  S  L  H  *  Q  E  R  G  T  P  S  Q  G  R  E  G  C  S  S  K  V  F  N  S  G  W  A  *  C  C  L  L  Y  N  L  R  S  T  W  W  K  C  Y  I  E  E  Y  V  R  D  H  L  L  W  G  T  *  S  T  R  S  S  S  H  S  H  R  I  S  L  G  S  *  P  E  H  A  R  F  S  L  L  S  V  S  I  C  S  E  N  G  V  E  S  S  S  G  *  C  R  L  T  *  Y  V  *  Q  Q  R  S  S  G  *  S  A  G  Y  F  L  L  D  V  G  *  K  F  N  L  H  C  S  S  R  G  E   </second_frame>
            <third_frame>   L  K  S  M  D  T  K  Y  D  L  Q  L  N  Q  N  A  T  M  R  V  I  W  A  L  G  L  I  K  P  P  D  S  L  R  P  F  Y  L  P  Q  N  H  G  G  S  Y  G  H  L  T  L  N  V  S  E  H  I  D  D  C  L  G  P  L  D  A  E  D  K  Q  D  Q  D  L  V  I  A  D  K  K  G  P  L  V  V  S  T  G  P  A  V  F  Y  P  N  P  P  N  P  S  K  V  L  Y  I  N  K  K  E  A  P  L  L  R  V  E  R  G  V  Q  V  K  F  S  I  Q  A  G  H  D  V  A  F  Y  I  T  S  D  P  L  G  G  N  A  T  L  R  N  M  S  E  T  I  Y  F  G  G  P  E  A  Q  G  V  Q  A  T  P  T  E  L  V  W  A  P  D  R  N  T  P  D  L  V  Y  Y  Q  S  L  Y  A  Q  K  M  G  W  K  V  Q  V  V  D  A  G  L  P  D  M  Y  N  S  S  V  V  L  D  D  Q  Q  V  T  F  F  W  T  L  A  E  N  S  I  S  I  A  A  R  G  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0046G10.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85335" stop="84625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSMDTKYDLQLNQNATMRVIWALGLIKPPDSLRPFYLPQNHGGSYGHLTLNVSEHIDDCLGPLDAEDKQDQDLVIADKKGPLVVSTGPAVFYPNPPNPSKVLYINKKEAPLLRVERGVQVKFSIQAGHDVAFYITSDPLGGNATLRNMSETIYFGGPEAQGVQATPTELVWAPDRNTPDLVYYQSLYAQKMGWKVQVVDAGLPDMYNSSVVLDDQQVTFFWTLAENSISIAARGEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 116 chains have been computed
$ 
$ memory statistics:
$ 181864 bytes spliced alignments in total
$ 55 spliced alignments have been stored
$ 3306 bytes was the average size of a spliced alignment
$ 19320 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1756 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 130 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:27:19
-->
