<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:33:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9159-2" ref_strand="+" ref_description="SGN-M9159-2 C2_At5g62530-2 [cosii_markers]">
      <seq>aaaagtttggaagagaatgatgtatcgactttccgcatacaggcaattgcagaagagagcttcttctagtcatctcaattggatcactttattcgattctagaagatcaaaccacactttgtcttttgctactgtaaaagctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacaatattggatcccttgaatgggcagccgttcattaaagttgcagaagtaaatgaatcagaactgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgcgaagctaatacaaagggtgtctcctaagagttaccaacaagctcttgttgaagttctcgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtagcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcataaactcagatggaaagacaatgaacaagctactcgtggaggcaaaaccacgcatgactctcttcacaggtagctcaagggtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtggattacgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcttagacaaaatgaccgagcttgctgcaagaagaaagttagatgatttaactattggtcctgtccttacggttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcgagattgctctttggtggtgaagccttacagaaccattcgatcccaaaaatttatggagccattaagcccactgctatttttgtacctcttgaagaaatactcaaagatgaacattatcctctcgtgaccaaagagatttttgggccattccaggttgtgactgagtacaaagataatcagcttccactggtcctcgatgcccttgaaaagatgcatgcacatttaacagctgctgtggtttccaatgatatattgttcctgcaaaaagtgattggaaattcagttaatggaaccacttatgctggattgagagcaagaacaacaggggctccccagaatcactggtttggtcctgccggggaccccagaggagccggaataggtactccagaagctattaaacttgtatggtcttgccacagagaaatcatctatgatgttggtcccatgccactaggatggaaagttcctgcatctacttgaggaaccaactgctaccactcaaagcactcgaggatcgcgttcaaagagcctaacgttagaattccttggagagaatccagttgtggataatggaagaattagtttggttaacacaaaatcaagtggaatgctatttgagtgcatatgtttgtgcagacatatgagcagccagcttatactacatatctaataaataagctagttatttcggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="-" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63845" stop="56809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63545" g_stop="63441" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63440" i_stop="62637" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62636" g_stop="62557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="185" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62556" i_stop="62244" i_length="313">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62243" g_stop="62140" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="289" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62139" i_stop="61932" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61931" g_stop="61864" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="357" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61863" i_stop="61723" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61722" g_stop="61665" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="415" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61664" i_stop="61540" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61539" g_stop="61426" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="529" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61425" i_stop="61071" i_length="355">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61070" g_stop="60987" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="613" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60986" i_stop="60647" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60646" g_stop="60542" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="718" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="60541" i_stop="60275" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60274" g_stop="60161" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="832" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60160" i_stop="59821" i_length="340">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="59820" g_stop="59689" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="964" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="59688" i_stop="59593" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="59592" g_stop="59503" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1054" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="59502" i_stop="59347" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="59346" g_stop="59257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1144" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="59256" i_stop="58919" i_length="338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="58918" g_stop="58709" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1354" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="58708" i_stop="58628" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="58627" g_stop="58517" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1355" r_stop="1465" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="58516" i_stop="57630" i_length="887">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="57629" g_stop="57550" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1466" r_stop="1545" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="57549" i_stop="57463" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="57462" g_stop="57113" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1546" r_stop="1895" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1896" polyA_stop="1913"/>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="-" ref_id="SGN-M9159-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1895</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9159-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63545" e_stop="63441"/>
          <exon e_start="62636" e_stop="62557"/>
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          <exon e_start="57629" e_stop="57550"/>
          <exon e_start="57462" e_stop="57113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTGGTCAGCAACTTCTTATCATCTTCTATCTGTTATTGTAAATACACCTATTTAGCTTATTAACTCTCCTAAACAATGCCCATAATGTAGGTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</genome_strand>
        <mrna_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG................................................................................................GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG.......................................................................................GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9159" ref_strand="+" ref_description="SGN-M9159 C2_At5g62530 [cosii_markers]">
      <seq>ttcacaggtagctcaagagtggcagagaagttagctgatgacctaagcggtcgagtcaaactagaagatgctggattcgactggaagatccttggacccgatgtcaatgaggtggattatgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggggtaaaagttctctcatagacaaaatggctgagtttgctgcaagaagaaagttagatgatttaactgttggtcctgtccttacggttacaactgaagcaatgctagaccatgcgaagaaattacttcagatacctggatcgagactgctctttggtggtgaagccttacaaaaccattcgatccctcaaatttatggagccattaaaccgactgctatttttgtaccacttgaagaaatactcaaagctgaacatttccatctcgtgactaaagagatttttgggccattccaggttgtgaccgaatacaaagataatcagcttccactggtcctggacgcccttgaaaagatgccatgcacatttaacagctgctgtggtttcaaatgacatattgttcctgcaaaaagtaattggaaattcagttaatggaaccacttatgctggtttgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="-" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60099" stop="57281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59799" g_stop="59689" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59688" i_stop="59593" i_length="96">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59592" g_stop="59503" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="201" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59502" i_stop="59347" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59346" g_stop="59257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="291" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59256" i_stop="58919" i_length="338">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58918" g_stop="58709" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="501" r_length="210" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58708" i_stop="58628" i_length="81">
            <donor d_prob="0.958" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58627" g_stop="58517" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="613" r_length="112" r_score="0.928"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58516" i_stop="57630" i_length="887">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57629" g_stop="57581" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="662" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="-" ref_id="SGN-M9159" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59799" e_stop="59689"/>
          <exon e_start="59592" e_stop="59503"/>
          <exon e_start="59346" e_stop="59257"/>
          <exon e_start="58918" e_stop="58709"/>
          <exon e_start="58627" e_stop="58517"/>
          <exon e_start="57629" e_stop="57581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAGGTAATTGAATATTCTGAATTAAATGTCAAGTTGGGTAATTTTCTCGCTGATTCATCAAATCTTGCTGTTTTTTTCCCCTAGGTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATG-CATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAAGTAAGAAAATGTTCCCGTTTCTATTGAAATATCTGTTGCTCTATATACAACTTAAAATGTTTCACGTGCAACTAGCAGAAAATATCTCGAATTCTTTCTCTAGAAAGCATCCAGAATTTGTACATAAACTTATTTTTTGTACTTCATCGGATGAATCTAGAATAGAAAAGGCAATAACAGCACGAAAGATGCCAATGCCAAATCAGTTGTCGTTCCCTACCGAAGAAAATTTGTAGATCAAAACTGTTGAATTTTCTATTATGTCCCAAAAGTCAGTGTAGGAGGAGGGAAGGAAGGTGAGAAGAGAGGTGTAGTGTTCACTGTTAACTTACATGAAGCATTTGTAGTAATGCTGTTTGCTATTTTACCTTACTGTAGAATTGAAGAGCCACAGAGAAGGGAAAGAGACGAAATTTTGCTAGTCTCATATCTATAAAACCTCAGGAAGATACAAAAGTTTGGATAGTCCTAAATAGAATCAGGACACAGTACCAAAGAAAATCAAACTATATTGCTATACGTTATACTAGCCAGGGGTTCAGGGCTGAATCACCTCCATCAATTGTCTAATCTGCTGTTTAGATTAGTTTCTGTATATAACATTAAGGCACGTTGAACAAAAGAAGTTTAGATTCAGACTTGGGAACTTAAACCTTTATAATACATTTTGACTTATTGAATTGTTTGCATCATTTAGAACTTAGAATTTAGCATTGAGTGATAATGATAAAGTTGCTATGCTTTGTTGTTAAGATGGCTGGCATTTCTATCACGAAAAGAAAAAAACGAGAGAAATGAAAAGACTTGAGATTTGAAAAGCTTTATTAGCTATACCCCTATATGTACATGATTATGTAGTTATTTCAATTGTGAAATTCCCTTTTCAGAAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAG</genome_strand>
        <mrna_strand>TTCACAGGTAGCTCAAGAGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGACCCGATGTCAATGAG................................................................................................GTGGATTATGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGGGTAAAAGTTCTCTCATAGACAAAATGGCTGAGTTTGCTGCAAGAAGAAAGTTAGATGATTTAACTGTTGGTCCTGTCCTTACG..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAGCAATGCTAGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGACTGCTCTTTGGTGGTGAAGCCTTACAAAACCATTCGATCCCTCAAATTTATGGAGCCATTAAACCGACTGCTATTTTTGTACCACTTGAAGAAATACTCAAAGCTGAACATTTCCATCTCGTGACTAAAGAGATTTTTGGGCCATTCCAG.................................................................................GTTGTGACCGAATACAAAGATAATCAGCTTCCACTGGTCCTGGACGCCCTTGAAAAGATGCCATGCACATTTAACAGCTGCTGTGGTTTCAAATGACATATTGTTCCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAATTGGAAATTCAGTTAATGGAACCACTTATGCTGGTTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9159-3" ref_strand="+" ref_description="SGN-M9159-3 C2_At5g62530-3 [cosii_markers]">
      <seq>aaaggtttggaacagaatgatgtatcgactttccgcatacaggcaattgaagaacagagcttcttctagtcatctcaattggatcactttattcaattctacaagatcaaaccatactttgtcttttgctacggtaaaggctgaagaagtatcaggctctcaacctgctgaagttcacaacttggtgcagggcaagtggacaaaatcttctagttggaatacgatattggatcccttgaatgggcaaccattcattaaagttgcagaagtaaatgaatcagaattgcagccgtttgtggagagcttgtccaagtgcccgaaacatggtctacataatccattcaaagcaccagaaaggtacttaatgttaggagacgtatctacaaaagcagctcatgcgcttggcttgcctgaggtttctgatttctttgctaagctaatacaacgggtgtctcctaagagttaccaacaagctcttattgaagtccttgtgacgcagaaatttctggaaaatttctgtggtgatcaggttcgctttctagctagatcttttgcagtaccaggaaatcatctggggcagcagagccatggtttccgatggccttatggacctgtggcggttattgctccctttaattttcctttggagattcctttgcttcagctgatgggagcgttgtatatgggaaataagccagtacttaaagttgatagcaaggtatgcattgttatggaacaaatgcttcgactacttcatgagtgtgggttacctgtggatgatgtggatttcattaactcagatggaaagacaatgaacaagctactcgttgaggcaaaaccacgcatgactctcttcacaggtagctcaagagtggcagagaagttagctgatgacctaagtggtcgagtcaaactagaagatgctggattcgactggaagatccttgggcccgatgtcaatgaggtttacataatctgttatcgacagactttgttgcattttggaaaggctcttttcaagatttttattctctttgtgattgttggtttttgacaggtggattatgttgcatgggtttgtgaccaagatgcatatgcatgtagtggtcagaagtgttcagctgaatcaatattgttcatgcatgagaattggagtaaaagttctctcatagacaaaatgaccgagcttgctgccagaagaaagttagacgatttaactattggtcctgtccttacagttacaactgaaacaatgctggaccatgcgaagaaattacttcagatacctggatcaagattgctcttcggtggtgaagccttgcaaaaccattcaatcccaaaaatttatggagccattaaacccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="-" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63845" stop="58490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63545" g_stop="63441" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63440" i_stop="62637" i_length="804">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62636" g_stop="62557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="185" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62556" i_stop="62244" i_length="313">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62243" g_stop="62140" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="289" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62139" i_stop="61932" i_length="208">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61931" g_stop="61864" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="357" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61863" i_stop="61723" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61722" g_stop="61665" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="415" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61664" i_stop="61540" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61539" g_stop="61426" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="529" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61425" i_stop="61071" i_length="355">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61070" g_stop="60987" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="613" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60986" i_stop="60647" i_length="340">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60646" g_stop="60542" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="718" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="60541" i_stop="60275" i_length="267">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60274" g_stop="60161" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="832" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60160" i_stop="59821" i_length="340">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="59820" g_stop="59503" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1147" r_length="315" r_score="0.962"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="59502" i_stop="59347" i_length="156">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="59346" g_stop="59257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1148" r_stop="1237" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="59256" i_stop="58919" i_length="338">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="58918" g_stop="58790" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1238" r_stop="1366" r_length="129" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="-" ref_id="SGN-M9159-3" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>1369</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9159-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63545" e_stop="63441"/>
          <exon e_start="62636" e_stop="62557"/>
          <exon e_start="62243" e_stop="62140"/>
          <exon e_start="61931" e_stop="61864"/>
          <exon e_start="61722" e_stop="61665"/>
          <exon e_start="61539" e_stop="61426"/>
          <exon e_start="61070" e_stop="60987"/>
          <exon e_start="60646" e_stop="60542"/>
          <exon e_start="60274" e_stop="60161"/>
          <exon e_start="59820" e_stop="59503"/>
          <exon e_start="59346" e_stop="59257"/>
          <exon e_start="58918" e_stop="58790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAGGTATACTCTTTTATTCTCATCATTTTCAGTAATAAAAGCTCTGTAAATAATCTAGGTTTAATAATTCTACTTTACAAAGCGATCGCCACCTAATTTCAGTTGTTTTGTTACAATAATGTAATGGTGTTTTGAAGGAATCACTTTTAATAGGTTAAAATTGTTCTTTAGAAGCGTTTACAATTTGATTATTGTAATCTTTGATAAATTTTGTGCATAGGGTAGGATGTATAAAGAACTTTACCTTATCTTTGTGGTGACAGAGATGTTGTTTTCGATAAAATCTAAGCTTTAGTTTTTTAAAAACTACCATTTTGGAAATTATTAGTTTAAATTCTGTTCATTCCAGTCCATCCGTTGGTAGTTTTTACGAAGGTTCATTATATCGTCCTTTATCTGGGCTTGAGACTACCAATGTGTTGTGTGACTATCTTTTTTTCTTTTCTAAACCAATTGTTTTAACAGAACCTGAAGTCCCTTCCATCTTTTTTAGTTAGTGCTACTATTTTTTCGCTATTAAGATTTTATTCCCTAAGGATTCAAAACGAAAAATGTCGTCTTTTTTATGTTATGGATGGATGATTTCTTGTATTTGATTCTTCCTTATTGGGCGTCTACATTATCATGATATGGACTTCTTGTTATCAGTGTAAATGCTGCTTAACTAGTATTTCTTTTTCTACTGAATTACGGTTCTGGGTAGTCTCAACCTTCTGTTTTGAGATAATCAATTGACGTGTATGGACCAAGCGGACGGTGTTGTTTTAGAGTCATTCAGACATTGTGATTTAATCTTTCATAATGCAGATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGGGTATGTACATTTACATAACGACTAGCTGCTGAAATTGGTCATTAATATGCAGTTTTCCAACGTTTGCCTAAGAATAGATGTGAGATATACTGTATAGACTTTAGATAATTTTGTAAGTTTGAATGATGTTAAACTCCCTGTATACCATATGCATGTTAGCAATTGATATTGAAGTAATACATCACTTCCGTACACCACTTTTCTTTCGATCAGATTCAAGTGTGTTTCTCCTATAAAAAAGGGAGAAGCTAGCTCTGGTCATTGCTCTAGTTTACTGCTACATCTAGTTGACTAGTGAATTTCATCCATTCAGTGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAGGTATATATAATTTGGATGCATCATAATTCTTTGCACTGTATCTTTCAAGATGAGTCTTTCGACAGTAGAGTCTGTTTATTCTGTACAGTTAACTTGTTACTTTATGACCAACTCTAGTTCAGTCGCATAAAGACTTTTCCCTTCTAGTATGAATTCTTTAACACCAAAGATTGTCATGGTTCTATAAGTCCTATTGCTGGGTGTGCAGCCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAGGTATGCTTTTAATGTTTTTGGTCTTTTTCTTGTTTTTTTATGAAGTTGTCTAGATGAGCATTTACTGTCTTATGAATTTTTCTCCAAAGGAAGATATGAGGACTTAAGAAAATTTAATCCGAATGACACCGCTTCTCGCAGGTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAGGTAATATATATTCAAGCAAGGATGCTGATGTTCTCGAAACCTTTTTGACTAACAGTTTATGATATGCATAATTAATTCTTATCATCTTAATGTTTTTCTTCTCTTTTTCTTTTTGGGTCTTACAGGTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAGGTAGATTCTAAAACTATTACCTTGTATGTTCAACGTTATACAGGGACTAGCTAAGAAAAAGATGTGTTTTAAATCGTGGCGCAACAATTCAGCAGCATAGCTTTCACATCCATGTGATTTTTTTGCTGCTTTATTTTATTTCAACAATTTTGTGTCTACTGATTGGTTGTTTCTTTTTTCCTTTTGCTGTTCTGTTAACTGTTAGTAGCTTTTTTGACACTGAAATATTTGAAAGCTTAATAGGTTTCAGTTTCAGGAACAAGGACTTATTTCACACGGGAATCATTTCTCCATTTTCTTTAACATGATACATGACTGTCCGATCCAATGCTGAACTCTTGATTTTATTTGGCAGGTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCTGTAAGGCACCGTTCTTTCCGTTGTTGACTATATTTAATGGAACATGTTAACAAAAAAGTCCTATGATACAATCTTTCACGTTGAAACTGAGATCTGAAGGTTTAGTTATGTAACTAAAATCACTTAGCTTCGGGGGAAACAAATTCTTCACAATTTCAGAATGGTGTTAAGTTGTGTTATACATTGCTTTTGGCCATAGTGCTCAAAGTGGTAAATTAACAGAACATAATTTGTTTCTTACGTTTTCCTGTTGTGACTTCCTTATGCGATTGAATGATATTTTTTATTTCAATTATTAAAATTTCTCACACTACCCAATTTTTAACTTTATATTTCATAGGTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAGGTAAGGTTGTGCAAATTTTTGTAGACTCTTTCACGTGCAAAATTACTTATCGGACAAGGTCCAGCTTAGAAACAAACTTGTCTATCATATATCAAAGAAGAAAAATTTGCTATTGATTTTTACAAACTCCTTACTTTTTTTGTCAAATTAACAAAATGTGCAGATAATTGGAAGATTTTGTTCCTAGTTTAGTTTATTTTTTCCTGTTAATAACTCTAAATATTTTTCCAGTGTGGTTTTTATAATTCGACCTGCATTGTTGGTTAGGTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAGGTTAATTTCTAAAACTAGACTCCTTTGGCCACTTATGAACAAGAATTGGCAACTGAAAATTACAAATTTTAGTCCAAAAACTTCCCATCCTATTAAAATTTTGTTGTCCTCATGTTATGTGCAAATAACCTTCACTTCAACCATGTTAAACTAATTCAGGAATCCCAAGAATAATTTAATCTATTTTCTTTGTTGAATTGTTGGCTTTTCGCACTAATATGGAGTAATTAACTTTCTAGAGTCTATAATAATTGTCGGATTCTTTCTAACCAACTTTTCCAACTACTAAAGATAATATTCCTATTTCCTGACATAGTTCTCTTTCGTATTGTGTCGTTAGGCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAGGTGTGCTTAGTCCTTCTATTTTCTTCATGGAAGTTAAATGTTTTGAGATACAAAATCTATGTGGTTTATATAAGTTTTGGAAAAAGTAATGTAATATGGTTTCATTGAATTTCGTTCAAAGAACTCTCTTTTCTAACCATTTTTATTTTGGTGCAGAATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACGGTAAGAATACCTAATGCTAATGTTAATTTGGAGATTCTGTGTCCATCATTTGATACAATTTACTAGAAGTTTGAAAGTATCGATACGTTGAATTTGAATCTATTTTGGATAGTCTTTTTGATGTTCAGAATATTATTCACTCAAACAAGTGCAGAAATCTGGGACTTTGTGTGATATAAACAGAATATTTATAATAAAGGAGGAGCTCACCTTTTGTTAACATGATTTATCCGTTATTTTCTTTCTTGAATTACGCATTCTTTGTAGTACATTGTCAAGTAATGCCAACAATCTTGTCAGAAATACCTGGCGATAATTGTTATGTCTTGCTCCTGCAGGTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACT</genome_strand>
        <mrna_strand>AAAGGTTTGGAACAGAATGATGTATCGACTTTCCGCATACAGGCAATTGAAGAACAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCAATTCTACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCATACTTTGTCTTTTGCTACGGTAAAGGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG.........................................................................................................................................................................................................................................................................................................................TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACGATATTGGATCCCTTGAATGGGCAACCATTCATTAAAGTTGCAGAAGTAAATGAATCAGAATTGCAG................................................................................................................................................................................................................CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG.............................................................................................................................................GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG.............................................................................................................................GTTTCTGATTTCTTTGCTAAGCTAATACAACGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTATTGAAGTCCTTGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG...................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT....................................................................................................................................................................................................................................................................................................................................................GTGGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG...........................................................................................................................................................................................................................................................................GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATTAACTCAGATGGAAAGACAATGAACAAGCTACTCGTTGAG....................................................................................................................................................................................................................................................................................................................................................GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGAGTGGCAGAGAAGTTAGCTGATGACCTAAGTGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGACTTTGTTGCATTTTGGAAAGGCTCTTTTCAAGA-TTTTTA-TT-CTCTTTGTGATTGTTGGTTTTTGACAGGTGGATTATGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG............................................................................................................................................................AATTGGAGTAAAAGTTCTCTCATAGACAAAATGACCGAGCTTGCTGCCAGAAGAAAGTTAGACGATTTAACTATTGGTCCTGTCCTTACA..................................................................................................................................................................................................................................................................................................................................................GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCAAGATTGCTCTTCGGTGGTGAAGCCTTGCAAAACCATTCAATCCCAAAAATTTATGGAGCCATTAAACCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1462" ref_strand="+" ref_description="SGN-M1462 T0534 [cos_markers]">
      <seq>caggggcagctacgagagaacacaaagcacaggaccttagctcggaaccctacctcaccgccttgttaccgccgtattggtggttacaatgtcgactccagctagaaagaggctgatgagggatttcaagaggttgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgctttggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttgactcttcaattctctgaggattaccccaacaagccaccaacagtgcggtttgtttctcgcatgtttcatcctaatatttatgcagatggaagtatatgtttggatattcttcagaatcaatggagtccaatttatgatgttgcggcaatacttacatccattcagtcattgctgtgtgatccaaaccccaactcacctgcaaactcggaagcagctcggatgttcagtgagaataaaagggagtacaatcgcagagtgagagaaattgttgagcagagctggactgctgactgattctagggacgaaagatgtccttgcagacctcagatgaagagcaccatggctcagctatgttatatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="-" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94111" stop="88219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93811" g_stop="93733" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93732" i_stop="91728" i_length="2005">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91727" g_stop="91594" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="213" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91593" i_stop="91476" i_length="118">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91475" g_stop="91450" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="239" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91449" i_stop="90907" i_length="543">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90906" g_stop="90817" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="329" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90816" i_stop="90725" i_length="92">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90724" g_stop="90636" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="418" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90635" i_stop="88718" i_length="1918">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88717" g_stop="88519" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="617" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="-" ref_id="SGN-M1462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93811" e_stop="93733"/>
          <exon e_start="91727" e_stop="91594"/>
          <exon e_start="91475" e_stop="91450"/>
          <exon e_start="90906" e_stop="90817"/>
          <exon e_start="90724" e_stop="90636"/>
          <exon e_start="88717" e_stop="88519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTGGTAAGTCCTTTGATTTTATATCTTCAATTTCCGATGGATCTTTGGAGTTCAAGGAAACTGGACAGGAAACTGATCTTTTGTTAAAAGCGAAAGCGGTTAAATTGGATAATTCTAATTTAGTTTGGAGAGTGTTTAAGAATTTTATGTGATTGTGCTTTTGCGACAATTAGCGAGAAGTTTTTGATCTTCAGTAAATAGTGTTATATTAGGGGAATTGTATGTGCGAGCCCTAATTCATGTGTGCTACAGTTGATTATTGTTATTTATTGTTCTGGAATTTGAGCTTTGTTACTTGATTGAGATGATCATAATTAGATCATGAGTTAAGCCAAATGAGAACTTGATTTATACCTGGATGACTGTGTTAAAGTGATATAAACAACTTTTACATACTTTTAATCCTGAAGTGGTGTTTAGAACTAAAATTTTTGACTTAGGTCATAAGTTTGAACCATGCACCAAGCGAATTAAAGTGCAGTATTTAAGTGGAGGAGGGTAGAGGGCTGGGCTCATCATCCCCAAGTTTCAAAGTGCGTAAGGGTTGGCTCTAGACAGATTTTATGGGTCATTAAATATAATAAAGGGCAAACAGAAAAAGCTCAATAGTAGTTCTCTTTTGTTGGGTTTGTTAACTAGTACTCGAGCATGTATTGTAGCATGTGTATCTCTTGCAAATTAGTATTAATGTTTTAAAATGATATAAAATATTAAAGTATGTATGTGATGGAAATCATAGGAGAAAAATACAAGTGCGGATTGATGAATGATTAGCCTATTGGACTGATATTTATTGTCATCGCAAAGCGCTAACGCCATCGCCGAAATGGTTTCTTTGGGGAGAAAAAGGTTTCCTTTTGTACCTTCTTCTAATATCGTTGGACCATGATAGTGAGTGGATGAAGCAGAAATTACCATTTGCGTTGAATCCATGAATAAAAAAAAGTAAAATTACAAGGATAGCAAGTTAATAAGGAAGAGAAACAAATAAAATTAAGGCGGACTGGCTTGGGAGTCTCTTGTAATTGGCTCCGTTTGTCATTTGAACCCTCCTACTTACTACTTCCCAAATGAACTCCTAAACTCGACAGAACTCTACTTTGTAGACCCTTTTCTCATCCTCTCAGTGTGTGTATAATACAATTGCTTGCATGTCGAATTCCAAGTCATTTTATAATGAGACAGAAAAAGTTACATATTAAAAATTAAATAATATACAACAAAGTAATAATATTTTTTCTGATTGTACCTCCTTTTCCCATCCCCCCCAAAAAAAAAAATAAAATATCCAAACCACCTCCCACTCCTATCCATTTTTTTTTTGATGACAAGGAAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGTAAAACCCCTGCTTCTATGCAATAGTTTGCAAACCACATTGGAGAGGATTCCTACTCCTACTCTTTCTCCAATCATTTTTACCCCCAAAAACTTACTCAAAATTCACCAGCCACTATCTTTATCGCAAGATGAACAATGATTAGATTTTTAGGTACGTGTGTTCTTATTTATAGAGCTAATGCAATTTATAGGAAAAACAATGGGTGTTGGAAAGAGATTTTGGGTGTTTTATGTTTGATATGAGTGTTTAGTAGTTGTTGAATGGTAGTTTTTCCTTTTTGTTGGAAATTTAAGTACATAGAAATGGTAAATGGGTCAGCCGGCAAAGATTGATTCTTAGTGTGATACCAATGGTTGCAAATTACACTCGAGGTTTTTAAGAAGAAGAAGAGTAGAAAATTTGGAAATTTCATAGTTTGAAAATGAGAGGAAACCCCTCTATTTAGAGACAACAAATAGTAGTATGAATAGTTGTTAATTGTGCTTTATTAGAAAAGTCAGAATCTTCAGTAACGTCACAATTCTTCAATATGAAAACGTGTCTATTTATAATATAATATAGATAAATATAAATTATAAAATATAGAGAATGCTTTTAAGGTAGTATAGATAGATTAATTTGACCATGTGATTTGCAGGTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGGGTGAGTTGTGTAATTAAAATACGCCAAATATGTGTTTAATGTCTGTTTGGGGCAGTTGTTATCATATGGTTTGAATAATCTACTTTCTCCTTTCTCTTCGTTTTGGTGTAACCTGCAGTCCTGATGACACTCCTTGGGATGGTGGTGAGTTATCCTTGCATTTGGTCGTTAGTGCAGTGTGGCAGAAGAATGTTAAAGGCTTAAAGCGTTGTAGTTGGTGCACATCTACTGTTTATGCATTGTTGTCTGTACAATTCAATTATGTTTTAATCATCTCAGTCTCTCTTTTCTGTGATTTGAAATTCTGAATAATCAGTTTGGAGAGTCGCACCCCTCGTCCCCTCCCAGGACATTCCTTGCCTACGAATAAGTAGTGATGAATGTTATGAATCATCTCATAGAGGTGATGCATATTCTAGTTTTGGAAATGCTTGAATCCTTTCTTTGATCTCCCAGTCCAAGCATTTCCAGTCCTGGCTTTCCAAGTCACTTTTGTATTATCATCTCTTGTCAGTTTATTACTCTCTGCCAAAAGTTAAGGTTGTTGGTGTTAGCAAGTGCGTCCTGTGGCTTTTGTTACCTTCGCCATCCTTTTCTTTTGACATAATATGATTTCTTTTTCATATCGCCTTAGTTTTGATATGAATTAATTAGTTCGGTTGTAACTATACTATTTGAGAACATCAGGTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATAGTAAGTTGGAGTTCAAGATTTGATTTTTATTTGTCAACAGTGGATAGGAATAGTAAATTTTATGTCTGGAATTGTTCTTCGTTTTTTTCCAGTTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAGGTATAGAACTGTAATTGATTTTTAGACATCACATTCTCTAAGTTATCCATGTCTTAATCCTGAGTTTTACTATTAAATCTAATGGTTGAAAGCATCATTAAATGAAAATATGTGTTGCAAAGGAGTAGTTTCTTGTTCCTCATTCTATAGGGTTGGAGATATCATCCTTGTGACAGCTTGACTTATCGTTGTTTTAGTTTTAGGCTACGTAGTTACATTTGCATATTGTATTGTGCGTTTCTGTTTCTTTATGATGATGAAGCAATTGTTAAGGAATCACATCGATTGATGCTAAAAGAATGCCTTGATCTGGGAATTTTCGAGAAGACTGCTGTTTCTCAAGCACTTTTGCCCAGAGCATGGTTTCTATTTCTAGATTTTAGAAAAGGTTGGTCATGGTCCAAAGACTCAATCAGATAAAATATTATCTCATGGTCAAGTACTTTCCCCCCTTCATGTGTTATCAATTGGAGTGTGGACTCTCCATGTATTGATAATTCACATTGCGGAGATAGAATGAGAGGTTTGTTTCATTGACTACAATGGAGTGTACCAGTCTCTCTATTGAGTTGACAAGTGGCATGAGAAGATGGAGGGTCAGAAGTGCTCCATGGAGTATGAGAGTTTGCTGATTTCTCTTAACTTTATACTTGGTGATTATGAATAGACATTTAAAACTAACTGTGACTTTGAAGAGGAACACCAATCGCTACATGGACAAGTTTAGTGACATGACCCAAGTTGTAAATAAAGTATTCATATAAAGCCAAATCATCTAACTGAATTGTGTGTGGGGGAGCCAATTAATTATTGGCCTGAAGCTTCTCTATAAACAGAGACCAACTTCCCTTATACCAGTTAAAAAAAAAAAGAAGACCAACTTCCCTTAGCTATTGTAAGAAGAACCTAAACATATTTTGCTTCTTTTAATACGTAGTTAAAGGCGTGTGACAATTCAGTTGTGTTAATTCTCCCAGTATAGAGAGAGAGTGGTAGTTAGCAGCTGTGCAAGTTACGACTTACTTGTCGATTGCTACAGCTGCTGGATCATGGAAAGAAACGGTACGTTTGTTTAACCTTACCTCAAGATTCTGCTCGTATTTGTGTCAATCACTTTATATTCTGCATGAAGATTTTTACTCAATCCCCTAACTGCTGGTGCTTGACTTAATAAGTTCCTTGCACAACCCACCATCCACCCATACAAGAAGAAGAGAAATAACATAGAATTGTGTATGATGTTGGTGCCTGAATATTCATTTCTTTATTACAATTACATCCAATAATGAGATGATCGATCTTTGTGTAGATTAAGATGTTGACTAGTTTGAAGTTGAACTTGCCGAGTAAAGGGGGTAGTAGACTTATGTCTTAATGTATGCAATTCAAGACATAGATACCCAAGCAGAAGTAGAAATTGTTACTCAATGGATGATATGCTTAAGACGCTAGACGTACTATCCTCATGCTTTGCCGGATTCTTGATGATGGAAGCTTTATGTCGAGCAATTATTACTTAAAACCTTAAGTGATGAGTATGACTTAAGGTTTTCAGCTCCTTAGTTTTAAGCATGTTGACTCTGCTGTACTTAAGCAAGAAAATGGTGCTGTTGCTAGACCCTAATTTGCCCTTAAAGATTTTTAGTTCCTACTTGGAATTTGTTAATTAATTTGGGTTGTACCTTGCTGAGTAAATGCGAAGGAGACAGGATGAGAGTGGCCATGGATTATCTGTAAAGCAAAGTCAGGAGAGTTAAGCTGAGTTACTCTATCCTACTGGGGACATGTACATGCAGAGGATTTGAAGGATTGAATAAAACAAAGGCTTTTTTCGTACTTATGCGCTAATAAAAATTATTTCAAGAAAGAAGACTATTGGTTTGTTGTTTGCGAATGACTGACACTCTTATTATTGCAGTCATTGCTGTGTGATCCAAACCCCAACTCACCTGCAAACTCGGAAGCAGCTCGGATGTTCAGTGAGAATAAAAGGGAGTACAATCGCAGAGTGAGAGAAATTGTTGAGCAGAGCTGGACTGCTGACTGATTCTAGGGACGAAAGATGTCCTTGCAGACCTCAGATGAAGAGCACCATGGCTCAGCTATGTTATATTTAC</genome_strand>
        <mrna_strand>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG......................................................................................................................TCCTGATGACACTCCTTGGGATGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA............................................................................................TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGCTGTGTGATCCAAACCCCAACTCACCTGCAAACTCGGAAGCAGCTCGGATGTTCAGTGAGAATAAAAGGGAGTACAATCGCAGAGTGAGAGAAATTGTTGAGCAGAGCTGGACTGCTGACTGATTCTAGGGACGAAAGATGTCCTTGCAGACCTCAGATGAAGAGCACCATGGCTCAGCTATGTTATATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2154" ref_strand="+" ref_description="SGN-M2154 T1639 [cos_markers]">
      <seq>tagcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="+" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108068" stop="109166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108368" g_stop="108866" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="+" ref_id="SGN-M2154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108368" e_stop="108866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</genome_strand>
        <mrna_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M167-R" ref_strand="+" ref_description="SGN-M167-R TG253-R [rflp_markers_reverse]">
      <seq>aaaagaagaccaacatctcagattttattttaaaatataaattttttaaagacaatagattatcaaaattgcaagaaccacaatttcatgctaatttttatgattttgttttatgtttataaatatgtaatttctaaattgtatttaagagctaattttgctgtttggagttttatctattttcaaatcatcattttcattttcttaaatatatttgtttaccttatttatcatttttaacttggtccaaaatataaataaatactatatgttatctgaatttatgacttcctatattacttttttttaatcatttattaaaagttttatatttgtgataagattaacttatgttttagttatttctttaaatttgaagatgtttctttcccaaatatagcagacatatgaagtatctccatttaaaatttttgtcctacagtgtcgagcgatttatttgactatgaccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="+" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110256" stop="111328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110556" g_stop="111028" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="+" ref_id="SGN-M167-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M167-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110556" e_stop="111028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGACCAACATATCAGATTTTATTTTAAAATATAAATTTTTTAAAGACAATAGATTATCAAAATTGCAAGAACCACAATTTCATGCTAATTTTTATGATTTTGTTTTATGTTTATAAATATGTAATTTCTAAATTGTATTTAAGAGCTAATTTTGCTGTTTGGAGTTTTATCTATTTTCAAATCATCATTTTCATTTTCTTAAATATATTTGTTTACCTTATTTATCATTTTTAACTTGGTCCAAAATATAAATAAATACTATATGTTATCTGAATTTATGACTTCCTATATTACTTTTTTTTAATCATTTATTAAAAGTTTTATATTTGTGATAAGATTAACTTATGTTTTAGTTATTTCTTTAAATTTGAAGATGTTTCTTTCCCAAATATAGCAGACATATGAAGTATCTCCATTTAAAATTTTTGTCCTACAGTGTCGAGCGATTTATTTGACTATGACCAAAA</genome_strand>
        <mrna_strand>AAAAGAAGACCAACATCTCAGATTTTATTTTAAAATATAAATTTTTTAAAGACAATAGATTATCAAAATTGCAAGAACCACAATTTCATGCTAATTTTTATGATTTTGTTTTATGTTTATAAATATGTAATTTCTAAATTGTATTTAAGAGCTAATTTTGCTGTTTGGAGTTTTATCTATTTTCAAATCATCATTTTCATTTTCTTAAATATATTTGTTTACCTTATTTATCATTTTTAACTTGGTCCAAAATATAAATAAATACTATATGTTATCTGAATTTATGACTTCCTATATTACTTTTTTTTAATCATTTATTAAAAGTTTTATATTTGTGATAAGATTAACTTATGTTTTAGTTATTTCTTTAAATTTGAAGATGTTTCTTTCCCAAATATAGCAGACATATGAAGTATCTCCATTTAAAATTTTTGTCCTACAGTGTCGAGCGATTTATTTGACTATGACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M167-F" ref_strand="+" ref_description="SGN-M167-F TG253-F [rflp_markers_forward]">
      <seq>cgtcgaagagggatttgacttgatttggatcggagacattggctttgacggcgattgcgcgtggggaatcggaggtggaattgatttgggatacgacgtcgtcagcttgagtagagttggaagtgtagttgatgacgagtttagctccgagagaggccaagtgaagagcaattgctttgccgattccgcgagaagagccggtaacaatggctacacgattcccgaggctttggccttgggctacgtttgtttccgccatgatcactgaagaaaagcactgaaattgctagaaaatggaattttgtggataaacaaacgaaaagtgctggtgtggtgctaaatgtgtgataatatttaatactcataacaaataattaaaagaggagaaaaagttcaaaatagtctctttatcttctattaagaattaaaatcatatttgaattctcacacaaattataatagttcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0052N09-9R87U/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0052N09.1" temp_strand="-" temp_description="C06HBa0052N09.1  AC211031.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0052N09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112357" stop="111287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112057" g_stop="111587" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0052N09.1" gen_strand="-" ref_id="SGN-M167-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0052N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M167-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112057" e_stop="111587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAAGAGGGATTTGACTTGATTTGGATCGGAGACATTGGCTTTGACGGCGATTGCGCGTGGGGAATCGGAGGTGGAATTGATTTGGGATACGACGTCGTCAGCTTGAGTAGAGTTGGAAGTGTAGTTGATGACGAGTTTAGCTCCGAGAGAGGCCAAGTGAAGAGCAATTGCTTTGCCGATTCCGCGAGAAGAGCCGGTAACAATGGCTACACGATTCCCGAGGCTTTGGCCTTGGGCTACGTTTGTTTCCGCCATGATCACTGAAGAAAAGCACTGAAATTGCTAGAAAATGGAATTTTGTGGATAAACAAACGAAAAGTGCTGGTGTGGTGCTAAATGTGTGATAATATTTAATACTCATAACAAATAATTAAAAGAGGAGAAAAAGTTCAAAATAGTCTCTTTATCTTCTATTAAGAATTAAAATCATATTTGAATTCTCACACAAATTATAATAGTTCCTCATG</genome_strand>
        <mrna_strand>CGTCGAAGAGGGATTTGACTTGATTTGGATCGGAGACATTGGCTTTGACGGCGATTGCGCGTGGGGAATCGGAGGTGGAATTGATTTGGGATACGACGTCGTCAGCTTGAGTAGAGTTGGAAGTGTAGTTGATGACGAGTTTAGCTCCGAGAGAGGCCAAGTGAAGAGCAATTGCTTTGCCGATTCCGCGAGAAGAGCCGGTAACAATGGCTACACGATTCCCGAGGCTTTGGCCTTGGGCTACGTTTGTTTCCGCCATGATCACTGAAGAAAAGCACTGAAATTGCTAGAAAATGGAATTTTGTGGATAAACAAACGAAAAGTGCTGGTGTGGTGCTAAATGTGTGATAATATTTAATACTCATAACAAATAATTAAAAGAGGAGAAAAAGTTCAAAATAGTCTCTTTATCTTCTATTAAGAATTAAAATCATATTTGAATTCTCACACAAATTATAATAGTTCCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="63545" PGL_stop="57113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63545" e_stop="63441"/>
            <exon e_start="62636" e_stop="62557"/>
            <exon e_start="62243" e_stop="62140"/>
            <exon e_start="61931" e_stop="61864"/>
            <exon e_start="61722" e_stop="61665"/>
            <exon e_start="61539" e_stop="61426"/>
            <exon e_start="61070" e_stop="60987"/>
            <exon e_start="60646" e_stop="60542"/>
            <exon e_start="60274" e_stop="60161"/>
            <exon e_start="59820" e_stop="59689"/>
            <exon e_start="59592" e_stop="59503"/>
            <exon e_start="59346" e_stop="59257"/>
            <exon e_start="58918" e_stop="58709"/>
            <exon e_start="58627" e_stop="58517"/>
            <exon e_start="57629" e_stop="57550"/>
            <exon e_start="57462" e_stop="57113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.633" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63545" e_stop="63441" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="63440" i_stop="62637" i_length="804"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62636" e_stop="62557" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.857">
            <gDNA_intron_boundary i_start="62556" i_stop="62244" i_length="313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62243" e_stop="62140" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.858">
            <gDNA_intron_boundary i_start="62139" i_stop="61932" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61931" e_stop="61864" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.334">
            <gDNA_intron_boundary i_start="61863" i_stop="61723" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61722" e_stop="61665" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61664" i_stop="61540" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61539" e_stop="61426" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61425" i_stop="61071" i_length="355"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61070" e_stop="60987" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.933">
            <gDNA_intron_boundary i_start="60986" i_stop="60647" i_length="340"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60646" e_stop="60542" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.633">
            <gDNA_intron_boundary i_start="60541" i_stop="60275" i_length="267"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="60274" e_stop="60161" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.937" acc_prob="0.979">
            <gDNA_intron_boundary i_start="60160" i_stop="59821" i_length="340"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="59820" e_stop="59689" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59688" i_stop="59593" i_length="96"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="59592" e_stop="59503" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.824" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59502" i_stop="59347" i_length="156"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="59346" e_stop="59257" e_length="90"/>
          </exon>
          <intron i_serial="12" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59256" i_stop="58919" i_length="338"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="58918" e_stop="58709" e_length="210"/>
          </exon>
          <intron i_serial="13" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="58708" i_stop="58628" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="58627" e_stop="58517" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="58516" i_stop="57630" i_length="887"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="57629" e_stop="57550" e_length="80"/>
          </exon>
          <intron i_serial="15" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="57549" i_stop="57463" i_length="87"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="57462" e_stop="57113" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63545" stop="63441"/>
              <exon start="62636" stop="62557"/>
              <exon start="62243" stop="62140"/>
              <exon start="61931" stop="61864"/>
              <exon start="61722" stop="61665"/>
              <exon start="61539" stop="61426"/>
              <exon start="61070" stop="60987"/>
              <exon start="60646" stop="60542"/>
              <exon start="60274" stop="60161"/>
              <exon start="59820" stop="59689"/>
              <exon start="59592" stop="59503"/>
              <exon start="59346" stop="59257"/>
              <exon start="58918" stop="58709"/>
              <exon start="58627" stop="58517"/>
              <exon start="57629" stop="57550"/>
              <exon start="57462" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9159-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59799" stop="59689"/>
              <exon start="59592" stop="59503"/>
              <exon start="59346" stop="59257"/>
              <exon start="58918" stop="58709"/>
              <exon start="58627" stop="58517"/>
              <exon start="57629" stop="57581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG : ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG : TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG : CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG : GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG : GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG : GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT : GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG : GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG : GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAG : GTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG : AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG : GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACTGCTATTTTTGTACCTCTTGAAGAAATACTCAAAGATGAACATTATCCTCTCGTGACCAAAGAGATTTTTGGGCCATTCCAG : GTTGTGACTGAGTACAAAGATAATCAGCTTCCACTGGTCCTCGATGCCCTTGAAAAGATGCATGCACATTTAACAGCTGCTGTGGTTTCCAATGATATATTGTTCCTGCAA : AAAGTGATTGGAAATTCAGTTAATGGAACCACTTATGCTGGATTGAGAGCAAGAACAACAGGGGCTCCCCAGAATCACTG : GTTTGGTCCTGCCGGGGACCCCAGAGGAGCCGGAATAGGTACTCCAGAAGCTATTAAACTTGTATGGTCTTGCCACAGAGAAATCATCTATGATGTTGGTCCCATGCCACTAGGATGGAAAGTTCCTGCATCTACTTGAGGAACCAACTGCTACCACTCAAAGCACTCGAGGATCGCGTTCAAAGAGCCTAACGTTAGAATTCCTTGGAGAGAATCCAGTTGTGGATAATGGAAGAATTAGTTTGGTTAACACAAAATCAAGTGGAATGCTATTTGAGTGCATATGTTTGTGCAGACATATGAGCAGCCAGCTTATACTACATATCTAATAAATAAGCTAGTTATTTCGG</gDNA_template>
            <first_frame> K  S  L  E  E  N  D  V  S  T  F  R  I  Q  A  I  A  E  E  S  F  F  *  S  S  Q  L  D  H  F  I  R  F  *  K  :  I  K  P  H  F  V  F  C  Y  C  K  S  *  R  S  I  R  L  S  T  C  *  S  S  Q  L  G :   A  G  Q  V  D  K  I  F  *  L  E  Y  N  I  G  S  L  E  W  A  A  V  H  *  S  C  R  S  K  *  I  R  T  A   : A  V  C  G  E  L  V  Q  V  P  E  T  W  S  T  *  S  I  Q  S  T  R  K  :  V  L  N  V  R  R  R  I  Y  K  S  S  S  C  A  W  L  A  *   : G  F  *  F  L  C  E  A  N  T  K  G  V  S  *  E  L  P  T  S  S  C  *  S  S  R  D  A  E  I  S  G  K  F  L  W  *  S   : G  S  L  S  S  *  I  F  C  S  T  R  K  S  S  G  A  A  E  P  W  F  P  M  A  L  W  T   : C  S  G  Y  C  S  L  *  F  S  F  G  D  S  F  A  S  A  D  G  S  V  V  Y  G  K  *  A  S  T  *  S  *  *  Q   : G  M  H  C  Y  G  T  N  A  S  T  T  S  *  V  W  V  T  C  G  *  C  G  F  H  K  L  R  W  K  D  N  E  Q  A  T  R  G   : G  K  T  T  H  D  S  L  H  R  *  L  K  G  G  R  E  V  S  *  *  P  K  R  S  S  Q  T  R  R  C  W  I  R  L  E  D  P  W  A  R  C  Q  *   : G  G  L  R  C  M  G  L  *  P  R  C  I  C  M  *  W  S  E  V  F  S  *  I  N  I  V  H  A  *   : E  L  E  *  K  F  S  L  R  Q  N  D  R  A  C  C  K  K  K  V  R  *  F  N  Y  W  S  C  P  Y   : G  Y  N  *  N  N  A  G  P  C  E  E  I  T  S  D  T  W  I  E  I  A  L  W  W  *  S  L  T  E  P  F  D  P  K  N  L  W  S  H  *  A  H  C  Y  F  C  T  S  *  R  N  T  Q  R  *  T  L  S  S  R  D  Q  R  D  F  W  A  I  P   : G  C  D  *  V  Q  R  *  S  A  S  T  G  P  R  C  P  *  K  D  A  C  T  F  N  S  C  C  G  F  Q  *  Y  I  V  P  A   : K  S  D  W  K  F  S  *  W  N  H  L  C  W  I  E  S  K  N  N  R  G  S  P  E  S  L  :  V  W  S  C  R  G  P  Q  R  S  R  N  R  Y  S  R  S  Y  *  T  C  M  V  L  P  Q  R  N  H  L  *  C  W  S  H  A  T  R  M  E  S  S  C  I  Y  L  R  N  Q  L  L  P  L  K  A  L  E  D  R  V  Q  R  A  *  R  *  N  S  L  E  R  I  Q  L  W  I  M  E  E  L  V  W  L  T  Q  N  Q  V  E  C  Y  L  S  A  Y  V  C  A  D  I  *  A  A  S  L  Y  Y  I  S  N  K  *  A  S  Y  F   </first_frame>
            <second_frame>  K  V  W  K  R  M  M  Y  R  L  S  A  Y  R  Q  L  Q  K  R  A  S  S  S  H  L  N  W  I  T  L  F  D  S  R  R :   S  N  H  T  L  S  F  A  T  V  K  A  E  E  V  S  G  S  Q  P  A  E  V  H  N  L   : V  Q  G  K  W  T  K  S  S  S  W  N  T  I  L  D  P  L  N  G  Q  P  F  I  K  V  A  E  V  N  E  S  E  L  Q  :  P  F  V  E  S  L  S  K  C  P  K  H  G  L  H  N  P  F  K  A  P  E  R :   Y  L  M  L  G  D  V  S  T  K  A  A  H  A  L  G  L  P  E  :  V  S  D  F  F  A  K  L  I  Q  R  V  S  P  K  S  Y  Q  Q  A  L  V  E  V  L  V  T  Q  K  F  L  E  N  F  C  G  D  Q  :  V  R  F  L  A  R  S  F  A  V  P  G  N  H  L  G  Q  Q  S  H  G  F  R  W  P  Y  G  P  :  V  A  V  I  A  P  F  N  F  P  L  E  I  P  L  L  Q  L  M  G  A  L  Y  M  G  N  K  P  V  L  K  V  D  S  K  :  V  C  I  V  M  E  Q  M  L  R  L  L  H  E  C  G  L  P  V  D  D  V  D  F  I  N  S  D  G  K  T  M  N  K  L  L  V  E  :  A  K  P  R  M  T  L  F  T  G  S  S  R  V  A  E  K  L  A  D  D  L  S  G  R  V  K  L  E  D  A  G  F  D  W  K  I  L  G  P  D  V  N  E  :  V  D  Y  V  A  W  V  C  D  Q  D  A  Y  A  C  S  G  Q  K  C  S  A  E  S  I  L  F  M  H  E  :  N  W  S  K  S  S  L  L  D  K  M  T  E  L  A  A  R  R  K  L  D  D  L  T  I  G  P  V  L  T  :  V  T  T  E  T  M  L  D  H  A  K  K  L  L  Q  I  P  G  S  R  L  L  F  G  G  E  A  L  Q  N  H  S  I  P  K  I  Y  G  A  I  K  P  T  A  I  F  V  P  L  E  E  I  L  K  D  E  H  Y  P  L  V  T  K  E  I  F  G  P  F  Q  :  V  V  T  E  Y  K  D  N  Q  L  P  L  V  L  D  A  L  E  K  M  H  A  H  L  T  A  A  V  V  S  N  D  I  L  F  L  Q  :  K  V  I  G  N  S  V  N  G  T  T  Y  A  G  L  R  A  R  T  T  G  A  P  Q  N  H  W :   F  G  P  A  G  D  P  R  G  A  G  I  G  T  P  E  A  I  K  L  V  W  S  C  H  R  E  I  I  Y  D  V  G  P  M  P  L  G  W  K  V  P  A  S  T  *  G  T  N  C  Y  H  S  K  H  S  R  I  A  F  K  E  P  N  V  R  I  P  W  R  E  S  S  C  G  *  W  K  N  *  F  G  *  H  K  I  K  W  N  A  I  *  V  H  M  F  V  Q  T  Y  E  Q  P  A  Y  T  T  Y  L  I  N  K  L  V  I  S  </second_frame>
            <third_frame>   K  F  G  R  E  *  C  I  D  F  P  H  T  G  N  C  R  R  E  L  L  L  V  I  S  I  G  S  L  Y  S  I  L  E   : D  Q  T  T  L  C  L  L  L  L  *  K  L  K  K  Y  Q  A  L  N  L  L  K  F  T  T  W  :  C  R  A  S  G  Q  N  L  L  V  G  I  Q  Y  W  I  P  *  M  G  S  R  S  L  K  L  Q  K  *  M  N  Q  N  C  S :   R  L  W  R  A  C  P  S  A  R  N  M  V  Y  I  I  H  S  K  H  Q  K   : G  T  *  C  *  E  T  Y  L  Q  K  Q  L  M  R  L  A  C  L  R :   F  L  I  S  L  R  S  *  Y  K  G  C  L  L  R  V  T  N  K  L  L  L  K  F  S  *  R  R  N  F  W  K  I  S  V  V  I  R :   F  A  F  *  L  D  L  L  Q  Y  Q  E  I  I  W  G  S  R  A  M  V  S  D  G  L  M  D  L :   *  R  L  L  L  P  L  I  F  L  W  R  F  L  C  F  S  *  W  E  R  C  I  W  E  I  S  Q  Y  L  K  L  I  A  R :   Y  A  L  L  W  N  K  C  F  D  Y  F  M  S  V  G  Y  L  W  M  M  W  I  S  *  T  Q  M  E  R  Q  *  T  S  Y  S  W  R :   Q  N  H  A  *  L  S  S  Q  V  A  Q  G  W  Q  R  S  *  L  M  T  *  A  V  E  S  N  *  K  M  L  D  S  T  G  R  S  L  G  P  M  S  M  R :   W  I  T  L  H  G  F  V  T  K  M  H  M  H  V  V  V  R  S  V  Q  L  N  Q  Y  C  S  C  M  R :   I  G  V  K  V  L  S  *  T  K  *  P  S  L  L  Q  E  E  S  *  M  I  *  L  L  V  L  S  L  R :   L  Q  L  K  Q  C  W  T  M  R  R  N  Y  F  R  Y  L  D  R  D  C  S  L  V  V  K  P  Y  R  T  I  R  S  Q  K  F  M  E  P  L  S  P  L  L  F  L  Y  L  L  K  K  Y  S  K  M  N  I  I  L  S  *  P  K  R  F  L  G  H  S  R :   L  *  L  S  T  K  I  I  S  F  H  W  S  S  M  P  L  K  R  C  M  H  I  *  Q  L  L  W  F  P  M  I  Y  C  S  C  K :   K  *  L  E  I  Q  L  M  E  P  L  M  L  D  *  E  Q  E  Q  Q  G  L  P  R  I  T   : G  L  V  L  P  G  T  P  E  E  P  E  *  V  L  Q  K  L  L  N  L  Y  G  L  A  T  E  K  S  S  M  M  L  V  P  C  H  *  D  G  K  F  L  H  L  L  E  E  P  T  A  T  T  Q  S  T  R  G  S  R  S  K  S  L  T  L  E  F  L  G  E  N  P  V  V  D  N  G  R  I  S  L  V  N  T  K  S  S  G  M  L  F  E  C  I  C  L  C  R  H  M  S  S  Q  L  I  L  H  I  *  *  I  S  *  L  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63544" stop="63441"/>
                    <exon start="62636" stop="62557"/>
                    <exon start="62243" stop="62140"/>
                    <exon start="61931" stop="61864"/>
                    <exon start="61722" stop="61665"/>
                    <exon start="61539" stop="61426"/>
                    <exon start="61070" stop="60987"/>
                    <exon start="60646" stop="60542"/>
                    <exon start="60274" stop="60161"/>
                    <exon start="59820" stop="59689"/>
                    <exon start="59592" stop="59503"/>
                    <exon start="59346" stop="59257"/>
                    <exon start="58918" stop="58709"/>
                    <exon start="58627" stop="58517"/>
                    <exon start="57629" stop="57550"/>
                    <exon start="57462" stop="57324"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVWKRMMYRLSAYRQLQKRASSSHLNWITLFDSRRSNHTLSFATVKAEEVSGSQPAEVHNLVQGKWTKSSSWNTILDPLNGQPFIKVAEVNESELQPFVESLSKCPKHGLHNPFKAPERYLMLGDVSTKAAHALGLPEVSDFFAKLIQRVSPKSYQQALVEVLVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAVIAPFNFPLEIPLLQLMGALYMGNKPVLKVDSKVCIVMEQMLRLLHECGLPVDDVDFINSDGKTMNKLLVEAKPRMTLFTGSSRVAEKLADDLSGRVKLEDAGFDWKILGPDVNEVDYVAWVCDQDAYACSGQKCSAESILFMHENWSKSSLLDKMTELAARRKLDDLTIGPVLTVTTETMLDHAKKLLQIPGSRLLFGGEALQNHSIPKIYGAIKPTAIFVPLEEILKDEHYPLVTKEIFGPFQVVTEYKDNQLPLVLDALEKMHAHLTAAVVSNDILFLQKVIGNSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDVGPMPLGWKVPAST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57349" stop="57134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGKFLHLLEEPTATTQSTRGSRSKSLTLEFLGENPVVDNGRISLVNTKSSGMLFECICLCRHMSSQLILHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63545" e_stop="63441"/>
            <exon e_start="62636" e_stop="62557"/>
            <exon e_start="62243" e_stop="62140"/>
            <exon e_start="61931" e_stop="61864"/>
            <exon e_start="61722" e_stop="61665"/>
            <exon e_start="61539" e_stop="61426"/>
            <exon e_start="61070" e_stop="60987"/>
            <exon e_start="60646" e_stop="60542"/>
            <exon e_start="60274" e_stop="60161"/>
            <exon e_start="59820" e_stop="59503"/>
            <exon e_start="59346" e_stop="59257"/>
            <exon e_start="58918" e_stop="58790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.943"/>
          <exon-intron don_prob="0.993" acc_prob="0.857" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.858" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="0.956"/>
          <exon-intron don_prob="0.995" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.633" e_score="0.990"/>
          <exon-intron don_prob="0.937" acc_prob="0.979" e_score="0.982"/>
          <exon-intron don_prob="0.824" acc_prob="0.994" e_score="0.962"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.956"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="63545" e_stop="63441" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="63440" i_stop="62637" i_length="804"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="62636" e_stop="62557" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.857">
            <gDNA_intron_boundary i_start="62556" i_stop="62244" i_length="313"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="62243" e_stop="62140" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.858">
            <gDNA_intron_boundary i_start="62139" i_stop="61932" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61931" e_stop="61864" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.334">
            <gDNA_intron_boundary i_start="61863" i_stop="61723" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61722" e_stop="61665" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61664" i_stop="61540" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="61539" e_stop="61426" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61425" i_stop="61071" i_length="355"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61070" e_stop="60987" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.933">
            <gDNA_intron_boundary i_start="60986" i_stop="60647" i_length="340"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="60646" e_stop="60542" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.633">
            <gDNA_intron_boundary i_start="60541" i_stop="60275" i_length="267"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="60274" e_stop="60161" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.937" acc_prob="0.979">
            <gDNA_intron_boundary i_start="60160" i_stop="59821" i_length="340"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="59820" e_stop="59503" e_length="318"/>
          </exon>
          <intron i_serial="10" don_prob="0.824" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59502" i_stop="59347" i_length="156"/>
          </intron>
          <exon e_serial="11" e_score="0.956">
            <gDNA_exon_boundary e_start="59346" e_stop="59257" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59256" i_stop="58919" i_length="338"/>
          </intron>
          <exon e_serial="12" e_score="0.953">
            <gDNA_exon_boundary e_start="58918" e_stop="58790" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63545" stop="63441"/>
              <exon start="62636" stop="62557"/>
              <exon start="62243" stop="62140"/>
              <exon start="61931" stop="61864"/>
              <exon start="61722" stop="61665"/>
              <exon start="61539" stop="61426"/>
              <exon start="61070" stop="60987"/>
              <exon start="60646" stop="60542"/>
              <exon start="60274" stop="60161"/>
              <exon start="59820" stop="59503"/>
              <exon start="59346" stop="59257"/>
              <exon start="58918" stop="58790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9159-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGTTTGGAAGAGAATGATGTATCGACTTTCCGCATACAGGCAATTGCAGAAGAGAGCTTCTTCTAGTCATCTCAATTGGATCACTTTATTCGATTCTAGAAG : ATCAAACCACACTTTGTCTTTTGCTACTGTAAAAGCTGAAGAAGTATCAGGCTCTCAACCTGCTGAAGTTCACAACTTGG : TGCAGGGCAAGTGGACAAAATCTTCTAGTTGGAATACAATATTGGATCCCTTGAATGGGCAGCCGTTCATTAAAGTTGCAGAAGTAAATGAATCAGAACTGCAG : CCGTTTGTGGAGAGCTTGTCCAAGTGCCCGAAACATGGTCTACATAATCCATTCAAAGCACCAGAAAG : GTACTTAATGTTAGGAGACGTATCTACAAAAGCAGCTCATGCGCTTGGCTTGCCTGAG : GTTTCTGATTTCTTTGCGAAGCTAATACAAAGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTGTTGAAGTTCTCGTGACGCAGAAATTTCTGGAAAATTTCTGTGGTGATCAG : GTTCGCTTTCTAGCTAGATCTTTTGCAGTACCAGGAAATCATCTGGGGCAGCAGAGCCATGGTTTCCGATGGCCTTATGGACCT : GTAGCGGTTATTGCTCCCTTTAATTTTCCTTTGGAGATTCCTTTGCTTCAGCTGATGGGAGCGTTGTATATGGGAAATAAGCCAGTACTTAAAGTTGATAGCAAG : GTATGCATTGTTATGGAACAAATGCTTCGACTACTTCATGAGTGTGGGTTACCTGTGGATGATGTGGATTTCATAAACTCAGATGGAAAGACAATGAACAAGCTACTCGTGGAG : GCAAAACCACGCATGACTCTCTTCACAGGTAGCTCAAGGGTGGCAGAGAAGTTAGCTGATGACCTAAGCGGTCGAGTCAAACTAGAAGATGCTGGATTCGACTGGAAGATCCTTGGGCCCGATGTCAATGAGGTTTACATAATCTGTTATCGACAGAGTTTGTTGCATTTTGGAAAGGCTTTTTTAAAGATTTTTTATTTACTTATTGTGATTGTTGGCTTTTGACAGGTGGATTACGTTGCATGGGTTTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGTTCAGCTGAATCAATATTGTTCATGCATGAG : AATTGGAGTAAAAGTTCTCTCTTAGACAAAATGACCGAGCTTGCTGCAAGAAGAAAGTTAGATGATTTAACTATTGGTCCTGTCCTTACG : GTTACAACTGAAACAATGCTGGACCATGCGAAGAAATTACTTCAGATACCTGGATCGAGATTGCTCTTTGGTGGTGAAGCCTTACAGAACCATTCGATCCCAAAAATTTATGGAGCCATTAAGCCCACT</gDNA_template>
            <first_frame> K  S  L  E  E  N  D  V  S  T  F  R  I  Q  A  I  A  E  E  S  F  F  *  S  S  Q  L  D  H  F  I  R  F  *  K  :  I  K  P  H  F  V  F  C  Y  C  K  S  *  R  S  I  R  L  S  T  C  *  S  S  Q  L  G :   A  G  Q  V  D  K  I  F  *  L  E  Y  N  I  G  S  L  E  W  A  A  V  H  *  S  C  R  S  K  *  I  R  T  A   : A  V  C  G  E  L  V  Q  V  P  E  T  W  S  T  *  S  I  Q  S  T  R  K  :  V  L  N  V  R  R  R  I  Y  K  S  S  S  C  A  W  L  A  *   : G  F  *  F  L  C  E  A  N  T  K  G  V  S  *  E  L  P  T  S  S  C  *  S  S  R  D  A  E  I  S  G  K  F  L  W  *  S   : G  S  L  S  S  *  I  F  C  S  T  R  K  S  S  G  A  A  E  P  W  F  P  M  A  L  W  T   : C  S  G  Y  C  S  L  *  F  S  F  G  D  S  F  A  S  A  D  G  S  V  V  Y  G  K  *  A  S  T  *  S  *  *  Q   : G  M  H  C  Y  G  T  N  A  S  T  T  S  *  V  W  V  T  C  G  *  C  G  F  H  K  L  R  W  K  D  N  E  Q  A  T  R  G   : G  K  T  T  H  D  S  L  H  R  *  L  K  G  G  R  E  V  S  *  *  P  K  R  S  S  Q  T  R  R  C  W  I  R  L  E  D  P  W  A  R  C  Q  *  G  L  H  N  L  L  S  T  E  F  V  A  F  W  K  G  F  F  K  D  F  L  F  T  Y  C  D  C  W  L  L  T  G  G  L  R  C  M  G  L  *  P  R  C  I  C  M  *  W  S  E  V  F  S  *  I  N  I  V  H  A  *   : E  L  E  *  K  F  S  L  R  Q  N  D  R  A  C  C  K  K  K  V  R  *  F  N  Y  W  S  C  P  Y   : G  Y  N  *  N  N  A  G  P  C  E  E  I  T  S  D  T  W  I  E  I  A  L  W  W  *  S  L  T  E  P  F  D  P  K  N  L  W  S  H  *  A  H  </first_frame>
            <second_frame>  K  V  W  K  R  M  M  Y  R  L  S  A  Y  R  Q  L  Q  K  R  A  S  S  S  H  L  N  W  I  T  L  F  D  S  R  R :   S  N  H  T  L  S  F  A  T  V  K  A  E  E  V  S  G  S  Q  P  A  E  V  H  N  L   : V  Q  G  K  W  T  K  S  S  S  W  N  T  I  L  D  P  L  N  G  Q  P  F  I  K  V  A  E  V  N  E  S  E  L  Q  :  P  F  V  E  S  L  S  K  C  P  K  H  G  L  H  N  P  F  K  A  P  E  R :   Y  L  M  L  G  D  V  S  T  K  A  A  H  A  L  G  L  P  E  :  V  S  D  F  F  A  K  L  I  Q  R  V  S  P  K  S  Y  Q  Q  A  L  V  E  V  L  V  T  Q  K  F  L  E  N  F  C  G  D  Q  :  V  R  F  L  A  R  S  F  A  V  P  G  N  H  L  G  Q  Q  S  H  G  F  R  W  P  Y  G  P  :  V  A  V  I  A  P  F  N  F  P  L  E  I  P  L  L  Q  L  M  G  A  L  Y  M  G  N  K  P  V  L  K  V  D  S  K  :  V  C  I  V  M  E  Q  M  L  R  L  L  H  E  C  G  L  P  V  D  D  V  D  F  I  N  S  D  G  K  T  M  N  K  L  L  V  E  :  A  K  P  R  M  T  L  F  T  G  S  S  R  V  A  E  K  L  A  D  D  L  S  G  R  V  K  L  E  D  A  G  F  D  W  K  I  L  G  P  D  V  N  E  V  Y  I  I  C  Y  R  Q  S  L  L  H  F  G  K  A  F  L  K  I  F  Y  L  L  I  V  I  V  G  F  *  Q  V  D  Y  V  A  W  V  C  D  Q  D  A  Y  A  C  S  G  Q  K  C  S  A  E  S  I  L  F  M  H  E  :  N  W  S  K  S  S  L  L  D  K  M  T  E  L  A  A  R  R  K  L  D  D  L  T  I  G  P  V  L  T  :  V  T  T  E  T  M  L  D  H  A  K  K  L  L  Q  I  P  G  S  R  L  L  F  G  G  E  A  L  Q  N  H  S  I  P  K  I  Y  G  A  I  K  P  T </second_frame>
            <third_frame>   K  F  G  R  E  *  C  I  D  F  P  H  T  G  N  C  R  R  E  L  L  L  V  I  S  I  G  S  L  Y  S  I  L  E   : D  Q  T  T  L  C  L  L  L  L  *  K  L  K  K  Y  Q  A  L  N  L  L  K  F  T  T  W  :  C  R  A  S  G  Q  N  L  L  V  G  I  Q  Y  W  I  P  *  M  G  S  R  S  L  K  L  Q  K  *  M  N  Q  N  C  S :   R  L  W  R  A  C  P  S  A  R  N  M  V  Y  I  I  H  S  K  H  Q  K   : G  T  *  C  *  E  T  Y  L  Q  K  Q  L  M  R  L  A  C  L  R :   F  L  I  S  L  R  S  *  Y  K  G  C  L  L  R  V  T  N  K  L  L  L  K  F  S  *  R  R  N  F  W  K  I  S  V  V  I  R :   F  A  F  *  L  D  L  L  Q  Y  Q  E  I  I  W  G  S  R  A  M  V  S  D  G  L  M  D  L :   *  R  L  L  L  P  L  I  F  L  W  R  F  L  C  F  S  *  W  E  R  C  I  W  E  I  S  Q  Y  L  K  L  I  A  R :   Y  A  L  L  W  N  K  C  F  D  Y  F  M  S  V  G  Y  L  W  M  M  W  I  S  *  T  Q  M  E  R  Q  *  T  S  Y  S  W  R :   Q  N  H  A  *  L  S  S  Q  V  A  Q  G  W  Q  R  S  *  L  M  T  *  A  V  E  S  N  *  K  M  L  D  S  T  G  R  S  L  G  P  M  S  M  R  F  T  *  S  V  I  D  R  V  C  C  I  L  E  R  L  F  *  R  F  F  I  Y  L  L  *  L  L  A  F  D  R  W  I  T  L  H  G  F  V  T  K  M  H  M  H  V  V  V  R  S  V  Q  L  N  Q  Y  C  S  C  M  R :   I  G  V  K  V  L  S  *  T  K  *  P  S  L  L  Q  E  E  S  *  M  I  *  L  L  V  L  S  L  R :   L  Q  L  K  Q  C  W  T  M  R  R  N  Y  F  R  Y  L  D  R  D  C  S  L  V  V  K  P  Y  R  T  I  R  S  Q  K  F  M  E  P  L  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63544" stop="63441"/>
                    <exon start="62636" stop="62557"/>
                    <exon start="62243" stop="62140"/>
                    <exon start="61931" stop="61864"/>
                    <exon start="61722" stop="61665"/>
                    <exon start="61539" stop="61426"/>
                    <exon start="61070" stop="60987"/>
                    <exon start="60646" stop="60542"/>
                    <exon start="60274" stop="60161"/>
                    <exon start="59820" stop="59596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVWKRMMYRLSAYRQLQKRASSSHLNWITLFDSRRSNHTLSFATVKAEEVSGSQPAEVHNLVQGKWTKSSSWNTILDPLNGQPFIKVAEVNESELQPFVESLSKCPKHGLHNPFKAPERYLMLGDVSTKAAHALGLPEVSDFFAKLIQRVSPKSYQQALVEVLVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAVIAPFNFPLEIPLLQLMGALYMGNKPVLKVDSKVCIVMEQMLRLLHECGLPVDDVDFINSDGKTMNKLLVEAKPRMTLFTGSSRVAEKLADDLSGRVKLEDAGFDWKILGPDVNEVYIICYRQSLLHFGKAFLKIFYLLIVIVGF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59595" stop="59503"/>
                    <exon start="59346" stop="59257"/>
                    <exon start="58918" stop="58790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVDYVAWVCDQDAYACSGQKCSAESILFMHENWSKSSLLDKMTELAARRKLDDLTIGPVLTVTTETMLDHAKKLLQIPGSRLLFGGEALQNHSIPKIYGAIKPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="93811" PGL_stop="88519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93811" e_stop="93733"/>
            <exon e_start="91727" e_stop="91594"/>
            <exon e_start="91475" e_stop="91450"/>
            <exon e_start="90906" e_stop="90817"/>
            <exon e_start="90724" e_stop="90636"/>
            <exon e_start="88717" e_stop="88519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.624" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93811" e_stop="93733" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93732" i_stop="91728" i_length="2005"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91727" e_stop="91594" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91593" i_stop="91476" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91475" e_stop="91450" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="91449" i_stop="90907" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90906" e_stop="90817" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.829" acc_prob="0.624">
            <gDNA_intron_boundary i_start="90816" i_stop="90725" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90724" e_stop="90636" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90635" i_stop="88718" i_length="1918"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88717" e_stop="88519" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93811" stop="93733"/>
              <exon start="91727" stop="91594"/>
              <exon start="91475" stop="91450"/>
              <exon start="90906" stop="90817"/>
              <exon start="90724" stop="90636"/>
              <exon start="88717" stop="88519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGGCAGCTACGAGAGAACACAAAGCACAGGACCTTAGCTCGGAACCCTACCTCACCGCCTTGTTACCGCCGTATTG : GTGGTTACAATGTCGACTCCAGCTAGAAAGAGGCTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGTATTAGTGGTGCACCTCAAGACAACAACATTATGCTTTGGAATGCCGTGATATTTGG : TCCTGATGACACTCCTTGGGATGGTG : GTACGTTCAAGTTGACTCTTCAATTCTCTGAGGATTACCCCAACAAGCCACCAACAGTGCGGTTTGTTTCTCGCATGTTTCATCCTAATA : TTTATGCAGATGGAAGTATATGTTTGGATATTCTTCAGAATCAATGGAGTCCAATTTATGATGTTGCGGCAATACTTACATCCATTCAG : TCATTGCTGTGTGATCCAAACCCCAACTCACCTGCAAACTCGGAAGCAGCTCGGATGTTCAGTGAGAATAAAAGGGAGTACAATCGCAGAGTGAGAGAAATTGTTGAGCAGAGCTGGACTGCTGACTGATTCTAGGGACGAAAGATGTCCTTGCAGACCTCAGATGAAGAGCACCATGGCTCAGCTATGTTATATTTAC</gDNA_template>
            <first_frame> Q  G  Q  L  R  E  N  T  K  H  R  T  L  A  R  N  P  T  S  P  P  C  Y  R  R  I   : G  G  Y  N  V  D  S  S  *  K  E  A  D  E  G  F  Q  E  V  A  A  G  P  S  C  W  Y  *  W  C  T  S  R  Q  Q  H  Y  A  L  E  C  R  D  I  W  :  S  *  *  H  S  L  G  W  W :   Y  V  Q  V  D  S  S  I  L  *  G  L  P  Q  Q  A  T  N  S  A  V  C  F  S  H  V  S  S  *  Y :   L  C  R  W  K  Y  M  F  G  Y  S  S  E  S  M  E  S  N  L  *  C  C  G  N  T  Y  I  H  S   : V  I  A  V  *  S  K  P  Q  L  T  C  K  L  G  S  S  S  D  V  Q  *  E  *  K  G  V  Q  S  Q  S  E  R  N  C  *  A  E  L  D  C  *  L  I  L  G  T  K  D  V  L  A  D  L  R  *  R  A  P  W  L  S  Y  V  I  F   </first_frame>
            <second_frame>  R  G  S  Y  E  R  T  Q  S  T  G  P  *  L  G  T  L  P  H  R  L  V  T  A  V  L  :  V  V  T  M  S  T  P  A  R  K  R  L  M  R  D  F  K  R  L  Q  Q  D  P  P  A  G  I  S  G  A  P  Q  D  N  N  I  M  L  W  N  A  V  I  F  G :   P  D  D  T  P  W  D  G   : G  T  F  K  L  T  L  Q  F  S  E  D  Y  P  N  K  P  P  T  V  R  F  V  S  R  M  F  H  P  N   : I  Y  A  D  G  S  I  C  L  D  I  L  Q  N  Q  W  S  P  I  Y  D  V  A  A  I  L  T  S  I  Q  :  S  L  L  C  D  P  N  P  N  S  P  A  N  S  E  A  A  R  M  F  S  E  N  K  R  E  Y  N  R  R  V  R  E  I  V  E  Q  S  W  T  A  D  *  F  *  G  R  K  M  S  L  Q  T  S  D  E  E  H  H  G  S  A  M  L  Y  L  </second_frame>
            <third_frame>   G  A  A  T  R  E  H  K  A  Q  D  L  S  S  E  P  Y  L  T  A  L  L  P  P  Y  W :   W  L  Q  C  R  L  Q  L  E  R  G  *  *  G  I  S  R  G  C  S  R  T  L  L  L  V  L  V  V  H  L  K  T  T  T  L  C  F  G  M  P  *  Y  L   : V  L  M  T  L  L  G  M  V  :  V  R  S  S  *  L  F  N  S  L  R  I  T  P  T  S  H  Q  Q  C  G  L  F  L  A  C  F  I  L  I  :  F  M  Q  M  E  V  Y  V  W  I  F  F  R  I  N  G  V  Q  F  M  M  L  R  Q  Y  L  H  P  F  S :   H  C  C  V  I  Q  T  P  T  H  L  Q  T  R  K  Q  L  G  C  S  V  R  I  K  G  S  T  I  A  E  *  E  K  L  L  S  R  A  G  L  L  T  D  S  R  D  E  R  C  P  C  R  P  Q  M  K  S  T  M  A  Q  L  C  Y  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93771" stop="93733"/>
                    <exon start="91727" stop="91594"/>
                    <exon start="91475" stop="91450"/>
                    <exon start="90906" stop="90817"/>
                    <exon start="90724" stop="90636"/>
                    <exon start="88717" stop="88589"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGTLPHRLVTAVLVVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="108368" PGL_stop="108866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108368" e_stop="108866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108368" e_stop="108866" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108368" stop="108866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</gDNA_template>
            <first_frame> *  Q  L  V  C  F  L  F  S  N  G  S  R  K  R  S  P  I  N  L  P  T  P  R  S  C  G  H  C  Y  R  F  F  S  R  N  R  Q  S  N  C  T  S  F  G  L  T  W  C  *  T  R  H  Q  L  F  L  Q  L  H  S  S  *  R  R  R  I  P  D  Q  F  H  L  R  L  P  T  C  H  C  G  Q  G  Q  Y  L  R  S  R  S  S  E  I  P  L  *  R  C  *  I  G  F  S  I  A  G  Q  H  P  G  K  L  R  R  G  T  R  R  K  I  P  V  N  P  K  H  N  P  R  G  F  R  Q  D  F  *  C  E  R  S  W  S  F  R  M  L  Q  G  R  C  *  E  N  Q  T  R  W  R  R  E  D  Y  M  L  I  D  </first_frame>
            <second_frame>  S  N  *  C  V  F  S  S  A  M  A  A  E  N  V  A  Q  S  T  F  P  L  Q  D  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  S  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  G  Y  P  R  A  I  A  V  K  A  N  I  S  D  P  D  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  S  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  A  R  G  A  F  V  C  C  K  E  G  A  K  R  I  K  H  G  G  G  G  R  I  I  C  L  S  T </second_frame>
            <third_frame>   A  I  S  V  F  S  L  Q  Q  W  Q  Q  K  T  *  P  N  Q  P  S  H  S  K  I  V  W  P  L  L  P  V  L  L  A  E  S  A  K  Q  L  H  F  I  W  P  H  L  V  L  N  S  S  S  T  I  P  P  T  P  L  K  L  T  T  S  Y  P  R  S  I  P  P  P  V  T  H  V  P  L  R  S  R  P  I  S  Q  I  Q  I  K  *  N  P  S  L  T  L  L  N  R  L  F  N  R  R  S  T  S  W  *  T  P  P  G  Y  S  T  E  N  T  R  Q  S  *  T  Q  P  *  R  I  S  T  G  L  L  M  *  T  L  V  E  L  S  Y  A  A  R  K  V  L  R  E  S  N  T  V  E  E  G  G  L  Y  A  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108378" stop="108866"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVFSSAMAAENVAQSTFPLQDRVAIVTGSSRGIGKAIALHLASLGAKLVINYSSNSTQADDVVSQINSTSGYPRAIAVKANISDPDQVKSLFDAAESAFQSPVNILVNSAGVLDGKYPSILNTTLEDFDRTFDVNARGAFVCCKEGAKRIKHGGGGRIICLST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="110556" PGL_stop="111028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110556" e_stop="111028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="110556" e_stop="111028" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110556" stop="111028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M167-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAAGACCAACATATCAGATTTTATTTTAAAATATAAATTTTTTAAAGACAATAGATTATCAAAATTGCAAGAACCACAATTTCATGCTAATTTTTATGATTTTGTTTTATGTTTATAAATATGTAATTTCTAAATTGTATTTAAGAGCTAATTTTGCTGTTTGGAGTTTTATCTATTTTCAAATCATCATTTTCATTTTCTTAAATATATTTGTTTACCTTATTTATCATTTTTAACTTGGTCCAAAATATAAATAAATACTATATGTTATCTGAATTTATGACTTCCTATATTACTTTTTTTTAATCATTTATTAAAAGTTTTATATTTGTGATAAGATTAACTTATGTTTTAGTTATTTCTTTAAATTTGAAGATGTTTCTTTCCCAAATATAGCAGACATATGAAGTATCTCCATTTAAAATTTTTGTCCTACAGTGTCGAGCGATTTATTTGACTATGACCAAAA</gDNA_template>
            <first_frame> K  R  R  P  T  Y  Q  I  L  F  *  N  I  N  F  L  K  T  I  D  Y  Q  N  C  K  N  H  N  F  M  L  I  F  M  I  L  F  Y  V  Y  K  Y  V  I  S  K  L  Y  L  R  A  N  F  A  V  W  S  F  I  Y  F  Q  I  I  I  F  I  F  L  N  I  F  V  Y  L  I  Y  H  F  *  L  G  P  K  Y  K  *  I  L  Y  V  I  *  I  Y  D  F  L  Y  Y  F  F  L  I  I  Y  *  K  F  Y  I  C  D  K  I  N  L  C  F  S  Y  F  F  K  F  E  D  V  S  F  P  N  I  A  D  I  *  S  I  S  I  *  N  F  C  P  T  V  S  S  D  L  F  D  Y  D  Q   </first_frame>
            <second_frame>  K  E  D  Q  H  I  R  F  Y  F  K  I  *  I  F  *  R  Q  *  I  I  K  I  A  R  T  T  I  S  C  *  F  L  *  F  C  F  M  F  I  N  M  *  F  L  N  C  I  *  E  L  I  L  L  F  G  V  L  S  I  F  K  S  S  F  S  F  S  *  I  Y  L  F  T  L  F  I  I  F  N  L  V  Q  N  I  N  K  Y  Y  M  L  S  E  F  M  T  S  Y  I  T  F  F  *  S  F  I  K  S  F  I  F  V  I  R  L  T  Y  V  L  V  I  S  L  N  L  K  M  F  L  S  Q  I  *  Q  T  Y  E  V  S  P  F  K  I  F  V  L  Q  C  R  A  I  Y  L  T  M  T  K  </second_frame>
            <third_frame>   K  K  T  N  I  S  D  F  I  L  K  Y  K  F  F  K  D  N  R  L  S  K  L  Q  E  P  Q  F  H  A  N  F  Y  D  F  V  L  C  L  *  I  C  N  F  *  I  V  F  K  S  *  F  C  C  L  E  F  Y  L  F  S  N  H  H  F  H  F  L  K  Y  I  C  L  P  Y  L  S  F  L  T  W  S  K  I  *  I  N  T  I  C  Y  L  N  L  *  L  P  I  L  L  F  F  N  H  L  L  K  V  L  Y  L  *  *  D  *  L  M  F  *  L  F  L  *  I  *  R  C  F  F  P  K  Y  S  R  H  M  K  Y  L  H  L  K  F  L  S  Y  S  V  E  R  F  I  *  L  *  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110589" stop="110795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NINFLKTIDYQNCKNHNFMLIFMILFYVYKYVISKLYLRANFAVWSFIYFQIIIFIFLNIFVYLIYHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="112057" PGL_stop="111587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112057" e_stop="111587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112057" e_stop="111587" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112057" stop="111587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M167-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGAAGAGGGATTTGACTTGATTTGGATCGGAGACATTGGCTTTGACGGCGATTGCGCGTGGGGAATCGGAGGTGGAATTGATTTGGGATACGACGTCGTCAGCTTGAGTAGAGTTGGAAGTGTAGTTGATGACGAGTTTAGCTCCGAGAGAGGCCAAGTGAAGAGCAATTGCTTTGCCGATTCCGCGAGAAGAGCCGGTAACAATGGCTACACGATTCCCGAGGCTTTGGCCTTGGGCTACGTTTGTTTCCGCCATGATCACTGAAGAAAAGCACTGAAATTGCTAGAAAATGGAATTTTGTGGATAAACAAACGAAAAGTGCTGGTGTGGTGCTAAATGTGTGATAATATTTAATACTCATAACAAATAATTAAAAGAGGAGAAAAAGTTCAAAATAGTCTCTTTATCTTCTATTAAGAATTAAAATCATATTTGAATTCTCACACAAATTATAATAGTTCCTCATG</gDNA_template>
            <first_frame> R  R  R  G  I  *  L  D  L  D  R  R  H  W  L  *  R  R  L  R  V  G  N  R  R  W  N  *  F  G  I  R  R  R  Q  L  E  *  S  W  K  C  S  *  *  R  V  *  L  R  E  R  P  S  E  E  Q  L  L  C  R  F  R  E  K  S  R  *  Q  W  L  H  D  S  R  G  F  G  L  G  L  R  L  F  P  P  *  S  L  K  K  S  T  E  I  A  R  K  W  N  F  V  D  K  Q  T  K  S  A  G  V  V  L  N  V  *  *  Y  L  I  L  I  T  N  N  *  K  R  R  K  S  S  K  *  S  L  Y  L  L  L  R  I  K  I  I  F  E  F  S  H  K  L  *  *  F  L  M </first_frame>
            <second_frame>  V  E  E  G  F  D  L  I  W  I  G  D  I  G  F  D  G  D  C  A  W  G  I  G  G  G  I  D  L  G  Y  D  V  V  S  L  S  R  V  G  S  V  V  D  D  E  F  S  S  E  R  G  Q  V  K  S  N  C  F  A  D  S  A  R  R  A  G  N  N  G  Y  T  I  P  E  A  L  A  L  G  Y  V  C  F  R  H  D  H  *  R  K  A  L  K  L  L  E  N  G  I  L  W  I  N  K  R  K  V  L  V  W  C  *  M  C  D  N  I  *  Y  S  *  Q  I  I  K  R  G  E  K  V  Q  N  S  L  F  I  F  Y  *  E  L  K  S  Y  L  N  S  H  T  N  Y  N  S  S  S   </second_frame>
            <third_frame>   S  K  R  D  L  T  *  F  G  S  E  T  L  A  L  T  A  I  A  R  G  E  S  E  V  E  L  I  W  D  T  T  S  S  A  *  V  E  L  E  V  *  L  M  T  S  L  A  P  R  E  A  K  *  R  A  I  A  L  P  I  P  R  E  E  P  V  T  M  A  T  R  F  P  R  L  W  P  W  A  T  F  V  S  A  M  I  T  E  E  K  H  *  N  C  *  K  M  E  F  C  G  *  T  N  E  K  C  W  C  G  A  K  C  V  I  I  F  N  T  H  N  K  *  L  K  E  E  K  K  F  K  I  V  S  L  S  S  I  K  N  *  N  H  I  *  I  L  T  Q  I  I  I  V  P  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0052N09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112056" stop="111790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEEGFDLIWIGDIGFDGDCAWGIGGGIDLGYDVVSLSRVGSVVDDEFSSERGQVKSNCFADSARRAGNNGYTIPEALALGYVCFRHDH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 16520 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2360 bytes was the average size of a spliced alignment
$ 11312 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2262 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:33:25
-->
