<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:42:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314484" ref_strand="+" ref_description="SGN-E314484 [cTOB-1-A9]">
      <seq>gttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="108" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="162" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="368" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="968" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="604" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E314484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGT</genome_strand>
        <mrna_strand>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356569" ref_strand="+" ref_description="SGN-E356569 [cTOS-21-K20]">
      <seq>ttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="108" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="158" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="364" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="946" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="578" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E356569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCT</genome_strand>
        <mrna_strand>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351306" ref_strand="+" ref_description="SGN-E351306 [cTOS-6-L10]">
      <seq>acaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtgtggccactgcaagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatggtcagggattccctactatgtacttcagaaccccctctggtaacttgtcccagtaccatggtgaaaaaaccaaaaaaggtatcctccaattcatccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="108" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="131" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="570" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="273" r_length="142" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E351306" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="108"/>
          <exon e_start="429" e_stop="570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGA</genome_strand>
        <mrna_strand>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGGTCAGGGATTCCCTACTATGTACTTCAGAACCCCCTCTGGTAACTTGTCCCAGTACCATGGTGAAAAAACCAAAAAAGGTATCCTCCAATTCATCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555031" ref_strand="+" ref_description="SGN-E555031 [cTSC-6-D14]">
      <seq>caagagtctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33" g_stop="108" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="282" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="969" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="519" r_length="237" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E555031" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTT</genome_strand>
        <mrna_strand>CAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349477" ref_strand="+" ref_description="SGN-E349477 [cTOS-1-C9]">
      <seq>ctggctccaattttggatgaagtggctgtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctgttgcagtaaataatgatacacaataattaaagaagttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40" g_stop="108" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="275" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="1069" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="612" r_length="337" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E349477" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="1069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCTC</genome_strand>
        <mrna_strand>CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288638" ref_strand="-" ref_description="SGN-E288638 [cLES-8-B19]">
      <seq>ctggctccaattttggataaagtggctgtatcatttgaaagcgatccttatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccacaggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40" g_stop="108" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="275" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="941" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="484" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E288638" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAA</genome_strand>
        <mrna_strand>CTGGCTCCAATTTTGGATAAAGTGGCTGTATCATTTGAAAGCGATCCTTATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACAGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227495" ref_strand="+" ref_description="SGN-E227495 [cLEL-30-M1](-)">
      <seq>gtatcatttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67" g_stop="108" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="248" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="959" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="475" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="494"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E227495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>GTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250179" ref_strand="-" ref_description="SGN-E250179 [cLEG-11-F11]">
      <seq>atttgaaagcgatcctgatgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagttttccnccttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctcctgcagtaaataatgatacccaataattaaagaagttcaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72" g_stop="108" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="243" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="1060" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="570" r_length="327" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="590"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E250179" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="1060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAA</genome_strand>
        <mrna_strand>ATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAG-TTTTCCNCCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTCCTGCAGTAAATAATGATACCCAATAATTAAAGAAGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221794" ref_strand="+" ref_description="SGN-E221794 [cLEL-10-L4](-)">
      <seq>tgttctcattgcaaaactggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgccctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90" g_stop="108" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="429" g_stop="634" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="226" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="733" g_stop="959" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="453" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E221794" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90" e_stop="108"/>
          <exon e_start="429" e_stop="634"/>
          <exon e_start="733" e_stop="959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCATTGCAAAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTACTTCATCCTTTGTTACATTAAGTAACGGCATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCG-CCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>TGTTCTCATTGCAAAACTG................................................................................................................................................................................................................................................................................................................................GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539990" ref_strand="+" ref_description="SGN-E539990 [TUS-60-A15](-)">
      <seq>cataataatcaagaaagaatgtgtagaattagaatcgggtttttagtataaaaatcagaaagaacggggtggacattttatctttgatgttatggatttcgttgttagagagatttttagtagaaaacatctgtaaagtgtatcaaaaaagaaggtttgtatggcttaaacacgattagcagttgtaatgcacaggacatgtatttgttgtcatttcctctcacctgcttcctcatttacaggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggtttggttctcttccttaaagcatcaattgtgatatctgccattattggttctttgtgctacagtaattgtaatttatattgatctcctcttattcaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="187" g_stop="970" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E539990" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="187" e_stop="970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTG</genome_strand>
        <mrna_strand>CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354288" ref_strand="+" ref_description="SGN-E354288 [cTOS-16-B22]">
      <seq>ttgttagagagatttttagtagaaaacatctgtaaagtgtatcaaaaaagaaggtttgtatggcttaaacacgattagcagttgtaatgcacaggacatgtatttgttgtcatttcctctcacctgcttcctcatttacaggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggtttggttctcttccttaaagcatcaattgtgatatctgccattattggttctttgtgctacagtaattgtaatttatattgatctcctcttattcaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="288" g_stop="954" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E354288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="288" e_stop="954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTT</genome_strand>
        <mrna_strand>TTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221708" ref_strand="+" ref_description="SGN-E221708 [cLEL-10-L4](-)">
      <seq>atgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="142" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="442" g_stop="634" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="733" g_stop="959" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="420" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="437"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E221708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="442" e_stop="634"/>
          <exon e_start="733" e_stop="959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>ATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229203" ref_strand="+" ref_description="SGN-E229203 [cLEL-29-P3](-)">
      <seq>aaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactaaatagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="240" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="540" g_stop="634" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="733" g_stop="959" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="322" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="339"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E229203" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="540" e_stop="634"/>
          <exon e_start="733" e_stop="959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGT</genome_strand>
        <mrna_strand>AAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228723" ref_strand="+" ref_description="SGN-E228723 [cLEL-29-P3](-)">
      <seq>ttcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="258" stop="1256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="558" g_stop="634" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="733" g_stop="957" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="302" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="321"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E228723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="558" e_stop="634"/>
          <exon e_start="733" e_stop="957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATA</genome_strand>
        <mrna_strand>TTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357363" ref_strand="+" ref_description="SGN-E357363 [cTOS-23-F5]">
      <seq>tcgattcagcaaaggatgaactttagaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctgttgcagtaaataatgatacacaataattaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="307" stop="1354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="607" g_stop="634" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="733" g_stop="1062" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="358" r_length="330" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E357363" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="607" e_stop="634"/>
          <exon e_start="733" e_stop="1062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAAT</genome_strand>
        <mrna_strand>TCGATTCAGCAAAGGATGAACTTTAGAG..................................................................................................GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287448" ref_strand="-" ref_description="SGN-E287448 [cLES-9-A17]">
      <seq>acattgtgcactggtggattcaagttctgttgaaagcattgtgtttgtggtgaattcgacctcccaccggattactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgaaaagttctccgactttatagtatcagcagttgaagttatcttctttgtcccagaatgctactgttggaatgtatgcctcctgttgcagtaaataatgatacacaataattaaagaaaaaaaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="443" stop="1354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="743" g_stop="1068" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E287448" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287448" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="743" e_stop="1068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCT</genome_strand>
        <mrna_strand>ACATTGTGCACTGGTGGATTCAAGTTCTGTTGAAAGCATTGTGTTTGTGGTGAATTCGACCTCCCACCGGATTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAAAAGTTCTCCGACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAAAAAAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392517" ref_strand="+" ref_description="SGN-E392517 [TUS-35-A4](-)">
      <seq>tgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttaccaccattatcgtgaagtgcttcatgaatttcattcctagggagagccccccccttttctgcagacttctgtgtcttcggatgtggtactgaactttgcactgtcggatttcttaacgtaagttttgagctccgagtactggttggatcacaactttcagcagttacttcatctgtcagcttattttttagtttgcgcctatctacttgttgagcctccaaatttgaactagatcctttatcaatggaaaatgttggttgcgaaacagacttagacgatgatgtactagaagaggcttcaaatgagtgatgtccttgtccaatagtcgaaaatgccacaggttcactatgttgttcgctggcactgtctagaacgagtgcagcgacatcgttctctttggctgaaattgaattttctgtttctgaaggtaattcagaaacttgtaatgttaagttgcttaaactaagatctgattcctgtgaagcaattgaatctgatctttcactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26407" stop="25316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26107" g_stop="25513" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E392517" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26107" e_stop="25513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCTTATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTATCAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCAAATGAGTGATGTCCTTGTCCAATAGTCGAAAATGCCACAGGTTCACTATGTTGTTCGCTGGCACTGTCTAGAACGAGTGCAGCGACATCGTTCTCTTTGGCTGAAATTGAATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT</genome_strand>
        <mrna_strand>TGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGCCCCCCCCTTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCTTATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTATCAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCAAATGAGTGATGTCCTTGTCCAATAGTCGAAAATGCCACAGGTTCACTATGTTGTTCGCTGGCACTGTCTAGAACGAGTGCAGCGACATCGTTCTCTTTGGCTGAAATTGAATTTTCTGTTTCTGAAGGTAATTCAGAAACTTGTAATGTTAAGTTGCTTAAACTAAGATCTGATTCCTGTGAAGCAATTGAATCTGATCTTTCACTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253834" ref_strand="+" ref_description="SGN-E253834 [cLEG-28-B19]">
      <seq>tgaaagatcagattctattgcttctcaggaatcagatcttagtttgggcaacttggcattacaagtttctgaattaccttcagaaacagaaaattcaatttcagccaaagagaacgatgtcgctgcactcgttctagacagtgccagcgaacaacatagtgaacctgtggcattttcgactattggacaaggacatcactcatttgaagcctcttctagtacatcatcgtctaagtctgtttcgcaaccaacattttccattgataaaggatctagttcaaatttggaggctcaacaagtagataggcgcaaactaaaaaataagctgacagatgaagtaactgctgaaagttgtgatccaaccagtactcggagctcaaaacttacgttaagaaatccgacagtgcaaagttcagtaccacatccgaagacacagaagtctgcagaaaattcaaagtctctccctaggaatgaaattcatgaagcacttcacgataatggtggtaaacagcctattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25316" stop="26348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25528" g_stop="26048" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E253834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25528" e_stop="26048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATTCAATTTCAGCCAAAGAGAACGATGTCGCTGCACTCGTTCTAGACAGTGCCAGCGAACAACATAGTGAACCTGTGGCATTTTCGACTATTGGACAAGGACATCACTCATTTGAAGCCTCTTCTAGTACATCATCGTCTAAGTCTGTTTCGCAACCAACATTTTCCATTGATAAAGGATCTAGTTCAAATTTGGAGGCTCAACAAGTAGATAGGCGCAAACTAAAAAATAAGCTGACAGATGAAGTAACTGCTGAAAGTTGTGATCCAACCAGTACTCGGAGCTCAAAACTTACGTTAAGAAATCCGACAGTGCAAAGTTCAGTACCACATCCGAAGACACAGAAGTCTGCAGAAAATTCAAAGTCTCTCCCTAGGAATGAAATTCATGAAGCACTTCACGATAATGGTGGTAAACAGCCTATTGAAG</genome_strand>
        <mrna_strand>TGAAAGATCAGATTCTATTGCTTCTCAGGAATCAGATCTTAGTTTGGGCAACTTGGCATTACAAGTTTCTGAATTACCTTCAGAAACAGAAAATTCAATTTCAGCCAAAGAGAACGATGTCGCTGCACTCGTTCTAGACAGTGCCAGCGAACAACATAGTGAACCTGTGGCATTTTCGACTATTGGACAAGGACATCACTCATTTGAAGCCTCTTCTAGTACATCATCGTCTAAGTCTGTTTCGCAACCAACATTTTCCATTGATAAAGGATCTAGTTCAAATTTGGAGGCTCAACAAGTAGATAGGCGCAAACTAAAAAATAAGCTGACAGATGAAGTAACTGCTGAAAGTTGTGATCCAACCAGTACTCGGAGCTCAAAACTTACGTTAAGAAATCCGACAGTGCAAAGTTCAGTACCACATCCGAAGACACAGAAGTCTGCAGAAAATTCAAAGTCTCTCCCTAGGAATGAAATTCATGAAGCACTTCACGATAATGGTGGTAAACAGCCTATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375471" ref_strand="+" ref_description="SGN-E375471 [TUS-34-H18]">
      <seq>tgaaagatcagattcaattgcttcacaggaatcagatcttagtttaagcaacttaacattacaagtttctgaattaccttcagaaacagaaaattcaatttcagccaaagagaacgatgtcgctgcactcgttctagacagtgccagcgaacaacatagtgaacctgtggcattttcgactattggacaaggacatcactcatttgaagcctcttctagtacatcatcgtctaagtctgtttcgcaaccaacattttccattgataaaggatctagttcaaatttggaggctcaacaagtagataggcgcaaactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25316" stop="26146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25528" g_stop="25846" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E375471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25528" e_stop="25846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATTCAATTTCAGCCAAAGAGAACGATGTCGCTGCACTCGTTCTAGACAGTGCCAGCGAACAACATAGTGAACCTGTGGCATTTTCGACTATTGGACAAGGACATCACTCATTTGAAGCCTCTTCTAGTACATCATCGTCTAAGTCTGTTTCGCAACCAACATTTTCCATTGATAAAGGATCTAGTTCAAATTTGGAGGCTCAACAAGTAGATAGGCGCAAACTAAAA</genome_strand>
        <mrna_strand>TGAAAGATCAGATTCAATTGCTTCACAGGAATCAGATCTTAGTTTAAGCAACTTAACATTACAAGTTTCTGAATTACCTTCAGAAACAGAAAATTCAATTTCAGCCAAAGAGAACGATGTCGCTGCACTCGTTCTAGACAGTGCCAGCGAACAACATAGTGAACCTGTGGCATTTTCGACTATTGGACAAGGACATCACTCATTTGAAGCCTCTTCTAGTACATCATCGTCTAAGTCTGTTTCGCAACCAACATTTTCCATTGATAAAGGATCTAGTTCAAATTTGGAGGCTCAACAAGTAGATAGGCGCAAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261649" ref_strand="+" ref_description="SGN-E261649 [cLEG-61-K13]">
      <seq>acaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatagtgttgggagagggggatgaagtagaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttaccaccattatcgtgaagtgcttcatgaatttcattcctagggagagactttgaattttctgcagacttctgtgtcttcggatgtggtactgaactttgcactgtcggatttcttaacgtaagttttgagctccgagtactggttggatcacaactttcagcagttacttcatctgtcagcttattttttagtttgcgcctatctacttgttgagcctccaaatttgaactagatcctttatcaatggaaaatgttggttgcgaaacagacttagacgatgatgtactagaagaggcttccaatgagtgatgtccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27819" stop="25415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27519" g_stop="27463" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="273" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="25715" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="772" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E261649" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27519" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="25715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCTTATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTATCAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCAAATGAGTGATGTCCTTG</genome_strand>
        <mrna_strand>ACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCTTATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTATCAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCCAATGAGTGATGTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251964" ref_strand="+" ref_description="SGN-E251964 [cLEG-14-F22]">
      <seq>tggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatagtgttgggagagggggatgaagtagaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttaccaccattatcgtgaagtgcttcatgaatttcattcctagggagagactttgaattttctgcagacttctgtgtcttcggatgtggtactgaactttgcactgtcggatttcttaacgtaagttttgagctccgagtactggttggatcacaactttcagcagttacttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27831" stop="25558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27531" g_stop="27463" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="285" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="25858" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="641" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E251964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27531" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="25858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCT</genome_strand>
        <mrna_strand>TGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275937" ref_strand="+" ref_description="SGN-E275937 [cLEN-12-O18]">
      <seq>ttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatactgttgggagagggggatgaagtaaaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttaccaccattatcgtgaagtgcttcatgaatttcattcctagggagagaccttgaattttctgcagacttctgtgtcttcggatgtggtactgaactttgcactgtcggatttcttaacgtaagttttgagctccgagtactggttggatcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27848" stop="25578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27548" g_stop="27463" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="302" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="25878" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="638" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E275937" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27548" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="25878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAAC</genome_strand>
        <mrna_strand>TTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATACTGTTGGGAGAGGGGGATGAAGTAAAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACCTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252920" ref_strand="+" ref_description="SGN-E252920 [cLEG-25-C11]">
      <seq>atttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatagtgttgggagagggggatgaagtagaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtctaccaccattatcgtgaagtgcttcatgaatttcattcctagggagagactttgaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27904" stop="25673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27604" g_stop="27463" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="358" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="25973" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="599" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E252920" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27604" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="25973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTC</genome_strand>
        <mrna_strand>ATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTCTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256778" ref_strand="+" ref_description="SGN-E256778 [cLEG-40-M11]">
      <seq>acaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactgggctaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatagtgttgggagagggggatgaagtagaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttaccaccattatcgtgaagtgcttcatgaatttcattccttaggagagactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27819" stop="25680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27519" g_stop="27463" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="273" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="25980" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="507" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E256778" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27519" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="25980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTG</genome_strand>
        <mrna_strand>ACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGGCTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTTAGGAGAGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250218" ref_strand="+" ref_description="SGN-E250218 [cLEG-11-D5]">
      <seq>ttttgtcgcctcaaaattacccttatctgaagtttgttcacttgcactaataggagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagannttcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatagtgttgggagagggggatgaagtagaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttaccaccattatcgtgaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27967" stop="25711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27654" g_stop="27463" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="206" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="422" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="26011" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="625" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E250218" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27654" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="26011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCT</genome_strand>
        <mrna_strand>AATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGANNTTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256238" ref_strand="+" ref_description="SGN-E256238 [cLEG-37-H3]">
      <seq>tcaactttggcttcttattcttatttgtctttgctgcaaaaatcttacgctttttgtcgcctcaagagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatagtgttgggagagggggatgaagtagaggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatgatgatgcttgtgaaccatcaatactctggctaattgtagaaaaaacttcttcaataggctgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28955" stop="25731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28655" g_stop="28591" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28590" i_stop="27616" i_length="975">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.198" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27615" g_stop="27463" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="218" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="434" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26213" g_stop="26031" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="617" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E256238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28655" e_stop="28591"/>
          <exon e_start="27615" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="26031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTGGCTTCTTATTCTTATTTGTCTTTGCTGCAAAAATCTTACGCTTTTTGTCGCCTCAAGTAAGTTTTCCTTAAGCAAGTAGAAAGTAAATAAAGACATATGTTTTCCTTAAGCAAATACGATATAGTATTCCTTCTTTCACTTGGCTTTGAATTCCTTCTTACATCTTTATTCACATAATTTTTCTACTTTAAGTATGCTAATAAATTACAAAGTTGTACTTAATTTTTGATTTTTACTTCCAGTAAGCTATGTTAAATGAATTCACGTTTGCTCAGGTTGCTCCAAAATGCATCGCACCGGTTTGTTAATCTTCAAAATATACTCATACATATTCATATGTACCTAACAAATTAACTTTTCATGAAAAATGAAGGAAGTATTAGAAGAAAATTGACATATTTGGAGTGCATGAAAAAAAATTAAAATAAAATGAAGACGAAAGAAATCAATTATATAAAAGTATTAACAATTCAAGTTTAAGGCCCCGTTTAATTTTTGTTTTAGGCCACTAATATGTTTGAGCCGACCTGAGTGAAAAATAGTCCTTTGTGAGAATCATCCACACATATTAGTCCATATAAATATTAATAGCATAATTTTTTTTCTAAAAACTGAAAATAGTAACATAAATATGAGTGCAGGTTTACCTGCTACAAACATGTTTTCAGTGTCATTCTCTATAAATTATACATCCTAATATACTATACAACAATAAATTTCCTCTTGACTCTCCTATGTGTATACATCAAACTTCATAGAGCTCCTATATACACCAGGTATCTTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTAC</genome_strand>
        <mrna_strand>TCAACTTTGGCTTCTTATTCTTATTTGTCTTTGCTGCAAAAATCTTACGCTTTTTGTCGCCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250747" ref_strand="+" ref_description="SGN-E250747 [cLEG-7-L11]">
      <seq>aaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaattccagaagtcgaggagccttcacttgctgagaactttggttgaatcatactgttgggagagggggatgaaatataggccctcggaacttgttcaaccaccaaatcatgtggtgatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27875" stop="25797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27575" g_stop="27463" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26748" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="329" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26213" g_stop="26097" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="446" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E250747" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27575" e_stop="27463"/>
          <exon e_start="26963" e_stop="26748"/>
          <exon e_start="26213" e_stop="26097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAGGTATCGGATCCTAAGTTACATTAAAAAGAAAAAACAATACTTGAAATTTCAAACACTTCTATAAGTGAGAAACTGGAAAGAAAATGTTGTTTCTATTAGGTTTTGTTATGCAGAACTTGAAAATGCAGGTGCAATTACATTTTCCTGTCTGCCAAAAACACTGCTTTACTGACACATTATAATTTTATTACAAACTTATGATACACATTCATTATTTTTAACTATACACGATTATACATCTTTTCTGCCTTTAACAAGTCGATACACAACTAAACTTCACAAAAAGTATTGTTTGCATGCTGGATTTCAACTTATATCAATTAATTTAACATGGAGTTGATTTCTTATATGGTCACTTGGATCGTAGTTATTATCTCATAAAGTCACTTTCTTTTTGTTGAAGAAAGGTTAATTTCTAAGATGATAACTATTAGTTGAGTAACCATCAGAGAAATCAACTCGTTTAACTTGCATAATCTAATCATTGTCAAATTCATTAAAATCACCAAACCTGCATTCTTTTCTGTGTTTCAGAAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATG</genome_strand>
        <mrna_strand>AAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATACTGTTGGGAGAGGGGGATGAAATATAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258728" ref_strand="+" ref_description="SGN-E258728 [cLEG-50-A21]">
      <seq>gtttttgaagagtctgaacaatatagaaaacaagtgcatgttaactatccccttattagtctttagccttctctttacaatctcttttttcactatgtgtttcctttaatgctgcagaattacccttatctgaagtttgttcacttgcactaataggagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaactcgaggctgtagggacttctcggattaaagattgtaagctgatcaagtcttgattgacagagctctccgatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28071" stop="26453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27771" g_stop="27463" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26753" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="520" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E258728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27771" e_stop="27463"/>
          <exon e_start="26963" e_stop="26753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAAT</genome_strand>
        <mrna_strand>GTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256700" ref_strand="+" ref_description="SGN-E256700 [cLEG-40-L13]">
      <seq>tacaaatgaaaattgagttacacatttaaggagtctcatgggaaaagaagaaacaaactatgttgtttgaactctcctaaaatatccctcggtgtttttgaagagtctgaacaatatagaaaacaagtgcatgttaactatccccttattagtctttagccttctctttacaatctcttttttcactatgtgtttcctttaatgctgcagaattacccttatctgaagtttgttcacttgcactaataggagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctatttgttcctccctgtcaaagttcaacagagggccttgacctgttgaggactttggtttgagtacggactttggtgatgatgaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28164" stop="26528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27864" g_stop="27463" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26828" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="538" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E256700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27864" e_stop="27463"/>
          <exon e_start="26963" e_stop="26828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACT</genome_strand>
        <mrna_strand>TACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392266" ref_strand="+" ref_description="SGN-E392266 [TUS-35-A4]">
      <seq>ttacaaatgaaaattgagttacacatttaaggagtctcatgggaaaagaagaaacaaactatgttgtttgaactctcctaaaatatccctcggtgtttttgaagagtctgaacaatatagaaaacaagtgcatgttaactatccccttattagtctttagccttctctttacaatctcttttttcactatgtgtttcctttaatgctgcagaattacccttatctgaagtttgttcacttgcactaataggagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatggggggggggggggggcttgaacttgaactttcacctatttgttcctccctgtcaaagttcaacagaaggccttgacctgttgaggacttttgttttgagttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28165" stop="26551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27865" g_stop="27463" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26855" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="514" r_length="111" r_score="0.817"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E392266" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27865" e_stop="27463"/>
          <exon e_start="26963" e_stop="26855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAAT-GAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGAC-TTTGGTTTGAG</genome_strand>
        <mrna_strand>TTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGGGGGGGGGGGGGGGGCTTGAACTTGAACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAAGGCCTTGACCTGTTGAGGACTTTTGTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439904" ref_strand="+" ref_description="SGN-E439904 [cSTA-14-G5]">
      <seq>acttcatagagctcctatatacaccaggtatcttacaaatgaaaattgagttacacatttaaggagtctcatgggaaaagaagaaacaaactatgttgtttgaactctcctaaaatatccctcggtgtttttgaagagtctgaacaatatagaaaacaagtgcatgttaactatccccttattagtctttagccttctctttacaatctcttttttcactatgtgtttcctttaatgctgcagaattacccttatctgaagtttgttcacttgcactaataggagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgatggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatgaagttctagacattcttggacttggactttcacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28197" stop="26615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27897" g_stop="27463" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26915" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="484" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E439904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27897" e_stop="27463"/>
          <exon e_start="26963" e_stop="26915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATAGAGCTCCTATATACACCAGGTATCTTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTAT</genome_strand>
        <mrna_strand>ACTTCATAGAGCTCCTATATACACCAGGTATCTTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGATGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375470" ref_strand="+" ref_description="SGN-E375470 [TUS-34-H18](-)">
      <seq>gcatcagaccaacttcatcatacagatgctaaaacggtacgtttatatagactggatcaaatgataccttcaattacttaagttatatatactgacagtatggtaggattatttttgttagtatgataaaccaaaccaccctttagagaataggttctcctattttcgcacttatcagtacataaaacttaccctctctttgaaacagcataaatagatggtcttttcttgttacattcattatatcatatttttgtgcttgtgaaaataatgtaatacggagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26666" stop="27551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26966" g_stop="27251" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E375470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26966" e_stop="27251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAGACCAACTTCATCATACAGATGCTAAAACGGTACGTTTATATAGACTGGATCAAATGATACCTTCAATTACTTAAGTTATATATACTGACAGTATGGTAGGATTATTTTTGTTAGTATGATAAACCAAACCACCCTTTAGAGAATAGGTTCTCCTATTTTCGCACTTATCAGTACATAAAACTTACCCTCTCTTTGAAACAGCATAAATAGATGGTCTTTTCTTGTTACATTCATTATATCATATTTTTGTGCTTGTGAAAATAATGTAATACGGAGTCA</genome_strand>
        <mrna_strand>GCATCAGACCAACTTCATCATACAGATGCTAAAACGGTACGTTTATATAGACTGGATCAAATGATACCTTCAATTACTTAAGTTATATATACTGACAGTATGGTAGGATTATTTTTGTTAGTATGATAAACCAAACCACCCTTTAGAGAATAGGTTCTCCTATTTTCGCACTTATCAGTACATAAAACTTACCCTCTCTTTGAAACAGCATAAATAGATGGTCTTTTCTTGTTACATTCATTATATCATATTTTTGTGCTTGTGAAAATAATGTAATACGGAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413374" ref_strand="+" ref_description="SGN-E413374 [STM-17-F8]">
      <seq>gagagaactagtctcgagttttttttttttttttttccgctagaagaagcattttcttcatttctcaataatcccacttttaagttctttcccaattactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaaagcagaaatggattttgtgtataagaacccatcagctcttattgaggaaagagtacaagatttgttatctcggatgacacttgaagaaaaaataggccaaatggctcagattgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcaccatttgaggatgccccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccatttttccacaaaatgtgggccttggagccaccagagatgcagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13381" stop="32211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29744" g_stop="29793" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.540"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29794" i_stop="29984" i_length="191">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29985" g_stop="30247" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="310" r_length="261" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="515" r_length="205" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31997" g_stop="32008" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="527" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E413374" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29744" e_stop="29793"/>
          <exon e_start="29985" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAACTATAAATGGAGGATATTTTTTACCCTTTTCCTTTTTAATATAATGATCAAATAATATCGGAATGCCCGATAAAATTTTCTGGGACACGTGTACAGATTCTTTCTTTGTAATTTTGTCTTCTTCCTAAAAGACAAATGTTTGTATTTCTGTGCACTTTTCACTTACTCTGCCATTTTTTCTTCTTCTTCTAAGTTTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTT</genome_strand>
        <mrna_strand>GAGAGAACTA-GTCTCGAGTTTTTTTTTTTTTTTTTTCCGCTAGAAGAAG...............................................................................................................................................................................................CATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAATTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGT-A-AAGCAGAAATGGATTTTGTGTATAAGAACCCATCAGCTCTTATTGAGGAAAGAGTACAAGATTTGTTATCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGGCTCAGATTGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCACCATTTGAGGATGCCCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCATTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416244" ref_strand="+" ref_description="SGN-E416244 [STM-22-B24]">
      <seq>atttggagacactctacctttctttctttcttcatcttctaagtttaacttgcagagagcgttaatggctattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccaattactattaacacaaatattcaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttatctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgccactccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcaccatttgaggatgccccttcggaagcttgggcatatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccatttttccacaaaatgtgggccttggagccaccagagatgcagatttggttcagaagattgggattgtgactgctcttgaagtcagggcttgttgcattaactatacttttgctccctgtgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29610" stop="32387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29927" g_stop="30247" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="347" r_length="321" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="552" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="643" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E416244" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29927" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCTTCTAAGTTTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT</genome_strand>
        <mrna_strand>TTTCTTCATCTTCTAAGTTTAACTTGCAGAGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAATTACTATTAACACAAATATTCAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTATCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCCACTCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCACCATTTGAGGATGCCCCTTCGGAAGCTTGGGCATATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCATTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGATTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTTGCATTAACTATACTTTTGCTCCCTGTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438489" ref_strand="+" ref_description="SGN-E438489 [cSTA-8-M17]">
      <seq>atttggagacactctacctttctttctttcttcatcttctaagtttaacttgcagagagcgttaatggctattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccaattactattaacacaaatattcaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttatctcggatgacacttgaagaaaaaataggccaaatgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29610" stop="30496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29927" g_stop="30196" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="296" r_length="270" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E438489" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29927" e_stop="30196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCTTCTAAGTTTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTC</genome_strand>
        <mrna_strand>TTTCTTCATCTTCTAAGTTTAACTTGCAGAGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAATTACTATTAACACAAATATTCAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTATCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481677" ref_strand="+" ref_description="SGN-E481677 [cSTD-19-E21]">
      <seq>ttaacttgcagagagcgttaatggctattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccaattactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaaagcagaaatggattttgtgtataagaacccatcagctcttattgaggaaagagtacaagatttgttatctcggatgacacttgaagaaaaaataggccaaatggctcagattgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcaccatttgaggatgccccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccatttttccacaaaatgtgggccttggagccaccagagatgcagatttggttcagaagattgggattgtgactgctcttgaagttagggcttgtggcattaactatacttttgctccctgtgttgctggatgtagagatcccaggtggggaagatgctatgagagttatggagaagacaccgaacttattaggaaagatgacctcattgtcacaggcttgcaggggcaaccacctnctggatacccccaaaactatccttttctagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29645" stop="33226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29945" g_stop="30247" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="506" r_length="205" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="597" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32785" g_stop="32926" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="739" r_length="142" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E481677" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29945" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGG-AAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTG</genome_strand>
        <mrna_strand>TTAACTTGCAGAGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAATTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGT-A-AAGCAGAAATGGATTTTGTGTATAAGAACCCATCAGCTCTTATTGAGGAAAGAGTACAAGATTTGTTATCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGGCTCAGATTGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCACCATTTGAGGATGCCCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCATTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGATTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTTAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGAGAAGACACCGAACTTATTAGGAAAGATGACCTC-ATTGTCACAGGCTTGCAGGGGCAACCACCTNCTGGATACCCCCAAAACTATCCTTTTCTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211927" ref_strand="+" ref_description="SGN-E211927 [cLEC-66-E4]">
      <seq>ctattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcgccatttgaggatgctccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgcagacttggttcagaagatgggattgtgactgctcttgaagtcagggcttgtggcattaactatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29669" stop="32368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29969" g_stop="30247" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="484" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32068" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="555" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E211927" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29969" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATAC</genome_strand>
        <mrna_strand>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGACTTGGTTCAGAAGA-TGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337557" ref_strand="+" ref_description="SGN-E337557 [cTOE-11-G22]">
      <seq>ctattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29669" stop="30550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29969" g_stop="30247" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E337557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29969" e_stop="30247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG</genome_strand>
        <mrna_strand>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337564" ref_strand="+" ref_description="SGN-E337564 [cTOE-11-K4]">
      <seq>tattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaatatgccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29670" stop="30550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29970" g_stop="30247" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E337564" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29970" e_stop="30247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG</genome_strand>
        <mrna_strand>TATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATATGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314778" ref_strand="+" ref_description="SGN-E314778 [cTOA-20-B23]">
      <seq>cacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcgccatttgaggatgctccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattangaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctgnataccccccaaactatccttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29675" stop="33221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29975" g_stop="30247" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="478" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="569" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32785" g_stop="32921" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="706" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E314778" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29975" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCT</genome_strand>
        <mrna_strand>CACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTANGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGNATACCCCCCAAACTATCCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314534" ref_strand="+" ref_description="SGN-E314534 [cTOA-20-C23]">
      <seq>ttatcaccattttcatcatttctcaataatcccacttttaagttctttcccaggtactattaacacaaatgatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccgaatgactcatatcgaacgcagtgttgctaccccctctgtcattactgacctttctatacggagtatactcagtgttggaggcagagcgccatttgaggatgctccatcggaagcttgggcacatatggttgacggatttcgaaaagctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcgtggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgccgacttggttcagaagattgggattgtgactgctcttgcagtcaaggcttgtggcattaactatacttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29678" stop="32375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29978" g_stop="30247" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="476" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32075" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="555" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E314534" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29978" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAAT-ATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCT</genome_strand>
        <mrna_strand>TTATCACCATTTTCATCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGGTACTATTAACACAAATGATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCGAATGACTCATATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGAGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCACATATGGTTGACGGATTTCGAAAAGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCGTGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCCGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGCAGTCAAGGCTTGTGGCATTAACTATACTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317820" ref_strand="+" ref_description="SGN-E317820 [cTOA-30-D21]">
      <seq>ttttcttcatttctcaataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcgccatttgaggatgctccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattangaagatgacctcaattgtcacaggcttgcaagggcaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29687" stop="33190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29987" g_stop="30247" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="466" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="557" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32785" g_stop="32890" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="663" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E317820" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29987" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCAC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTANGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312056" ref_strand="+" ref_description="SGN-E312056 [cTOA-11-K5]">
      <seq>aataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcgccatttgaggatgctccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29702" stop="33107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30002" g_stop="30247" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="451" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="542" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32785" g_stop="32807" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="565" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E312056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30002" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGG</genome_strand>
        <mrna_strand>AATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450948" ref_strand="+" ref_description="SGN-E450948 [cSTS-10-P6]">
      <seq>cattactgacctttctatagggagtatactcagtgttggaggcagtgcaccatttgaggatgccccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccatttttccacaaaatgtgggccttggagccaccagagatgcagatttggttcagaagattgggattgtgactgctcttgaagttagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggagaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgangtataaatgagggaaataccatatcatcgtatgatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29928" stop="33668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30228" g_stop="30247" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="225" r_length="205" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="316" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="462" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33273" g_stop="33368" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="558" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E450948" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30228" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCT</genome_strand>
        <mrna_strand>CATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCACCATTTGAGGATGCCCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCATTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGATTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTTAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGAGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGANGTATAAATGAGGGAAATACCATATCATCGTATGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260789" ref_strand="+" ref_description="SGN-E260789 [cLEG-55-K18]">
      <seq>ggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcattatttctcgatcatttgaatatcttgtgggaatctggaatattccnatgacanaatgatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31493" stop="34884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31793" g_stop="31903" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="202" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="348" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="592" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="697" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34492" g_stop="34584" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="786" r_length="89" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E260789" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31793" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGT-GGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCT</genome_strand>
        <mrna_strand>GGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATC-ATTATTTCTCGATCATTTG-AATATCTTGTGGGAATCT-GGAATATTCCNATGA-CANAA-TGATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244575" ref_strand="+" ref_description="SGN-E244575 [cLED-38-H19]">
      <seq>agagatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31695" stop="33701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31995" g_stop="32087" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="239" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33401" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="368" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E244575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31995" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTG</genome_strand>
        <mrna_strand>AGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228067" ref_strand="+" ref_description="SGN-E228067 [cLED-2-O22]">
      <seq>agagatgcatacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31695" stop="33668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31995" g_stop="32087" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="239" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33368" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="335" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E228067" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31995" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCT</genome_strand>
        <mrna_strand>AGAGATGCATACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268863" ref_strand="+" ref_description="SGN-E268863 [cLEM-4-P2]">
      <seq>agatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31697" stop="34828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="237" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="481" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="586" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34492" g_stop="34528" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="623" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E268863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATC</genome_strand>
        <mrna_strand>AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371110" ref_strand="+" ref_description="SGN-E371110 [TUS-28-D1]">
      <seq>gtgactgctcttgaagtcacggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31728" stop="34869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32028" g_stop="32087" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="206" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="450" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="555" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34492" g_stop="34569" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="633" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E371110" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32028" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACC</genome_strand>
        <mrna_strand>GTGACTGCTCTTGAAGTCACGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270921" ref_strand="+" ref_description="SGN-E270921 [cLEM-6-F10]">
      <seq>gtgactgctctggaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagggatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31728" stop="34849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32028" g_stop="32087" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="206" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="450" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="555" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34492" g_stop="34549" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="613" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E270921" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32028" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAAT</genome_strand>
        <mrna_strand>GTGACTGCTCTGGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGGGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276764" ref_strand="+" ref_description="SGN-E276764 [cLEN-14-P6]">
      <seq>agatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaaggtttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32509" stop="34712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32809" g_stop="32930" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="366" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="471" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E276764" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32809" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG</genome_strand>
        <mrna_strand>AGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGGTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262875" ref_strand="+" ref_description="SGN-E262875 [cLEG-59-M12]">
      <seq>ttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32523" stop="35798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32823" g_stop="32930" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="352" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="640" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35410" g_stop="35498" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="729" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E262875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32823" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCT</genome_strand>
        <mrna_strand>TTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263254" ref_strand="+" ref_description="SGN-E263254 [cLEG-62-L20]">
      <seq>ttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32523" stop="35758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32823" g_stop="32930" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="352" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="640" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35410" g_stop="35458" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="689" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E263254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32823" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTC</genome_strand>
        <mrna_strand>TTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274870" ref_strand="+" ref_description="SGN-E274870 [cLEN-13-P6]">
      <seq>aggcttgcaaggccaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32571" stop="34712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32871" g_stop="32930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="304" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="409" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E274870" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32871" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG</genome_strand>
        <mrna_strand>AGGCTTGCAAGGCCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358863" ref_strand="+" ref_description="SGN-E358863 [cLHT-24-A15]">
      <seq>ggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccttatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttattatttctgattccgaatgacttgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcanggattgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32582" stop="34712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32882" g_stop="32930" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="293" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="398" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E358863" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32882" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG</genome_strand>
        <mrna_strand>GGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCTTATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTATTATTTCTGATTCCGAATGACTTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCANGGATTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250755" ref_strand="+" ref_description="SGN-E250755 [cLEG-7-B4]">
      <seq>gaagagacaaggttgttgcctgtgtaaagcactttgttggagatgggggtactgagcgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcgcccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgcggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgatacgtcattgttggataccgttggttgtcatcaacatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32971" stop="34983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33269" g_stop="33516" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="353" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="536" r_length="183" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E250755" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33269" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT</genome_strand>
        <mrna_strand>GAAGAGACAAGGTTGTTGCCTGTGTAAAGCACTTTGTTGGAGATGGGGGTACTGAGCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCGCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGCGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATACGTCATTGTTGGATACCGTTGGTTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251432" ref_strand="+" ref_description="SGN-E251432 [cLEG-9-I20]">
      <seq>caaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32993" stop="34936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33293" g_stop="33516" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="329" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34492" g_stop="34636" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="474" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E251432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33293" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTC</genome_strand>
        <mrna_strand>CAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291669" ref_strand="+" ref_description="SGN-E291669 [cLET-6-I7]">
      <seq>gaccgagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33110" stop="35777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33322" g_stop="33328" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33329" i_stop="33411" i_length="83">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33412" g_stop="33516" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="112" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="217" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="400" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35410" g_stop="35477" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="468" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E291669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33322" e_stop="33328"/>
          <exon e_start="33412" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGT</genome_strand>
        <mrna_strand>GACCGAG...................................................................................GGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260291" ref_strand="+" ref_description="SGN-E260291 [cLEG-53-C19]">
      <seq>ctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgctagataggaaggcaaagagaattcttgtagcaggaaaacatgctgacgaccttggattccaatgtggagggtggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33107" stop="35874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33407" g_stop="33516" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="215" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="398" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35410" g_stop="35574" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="563" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E260291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33407" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACT</genome_strand>
        <mrna_strand>CTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706156" ref_strand="+" ref_description="SGN-E706156 [FA29AF11]">
      <seq>ctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggacttgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgctagataggaaggcaaagagaattcttgtagcaggaaaacatgctgacgaccttggattccaatgtggagggtggactaaaacatgggaaggaataggcggaagaatcacgattggaacaactattctggaagctattaaagatgctgttggaggggaaacagaactggtatatgaagaaaatccttcaccagacacctttgcgagtcaagacttctcttattgcattgtagttgttggtgaacctccctattgtgaaagcggtggagacagccaagacctcagaattcctcttggcggagaagaactaataaacttggttgcagacagagttccaacgttggtgatattgatctccggaangcctttatatatagagccttcgattctggagaaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33140" stop="37025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33440" g_stop="33516" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="182" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="365" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35410" g_stop="35611" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="567" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36440" g_stop="36725" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="853" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E706156" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33440" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35611"/>
          <exon e_start="36440" e_stop="36725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTGGTAAGTTATGCTTCCTCTGTTCTAATTATATGACACTCATTCATATTTACTACATGAAAAAAACAATTTCAACTTTCTATATTGTGAAAACTCTGACTTTAGGTGTACCATTTTATTCTTAGTGACATACTCCTATAGATATAGAAATATTTGACATGTTTTAGTTCACGAGTTTTATGGGTACTTTTGGTATGTGTAGAAAGTCTTTGGTTTTTCTTAAATTTTGTGCCCAGCCAAGCACCGCCATATAAAATGGAGAGAGTAATGGAAAGATGGCATCAGTCGTTACTTATACTTTCATACAACTAGAGCATTATAGTTTAGAGTAGCATCTTTCTTTCCTTCTTTCTTACATGGACTCAAATTTACCACAAGTTTAGGAACAATATCTCAAGAGTTCCGCTCCCATTTCTTGTGGGTGATTTGTAAAAACCCTGTATGTTTGATTGTTTTCTCGCAAGAAATCTTAAGCTATAATGTCATAAAATGCCTGATATCGCCAGCTGATAGCATAATTTTGTATGACATATGTAAGCTAGTGCATACTCTTGTTAGCCTTGCACAAAGATCTTGATGTACTAGGAACCTCAATAGACCCAATGTAGTCCGGTCCTTCTGCGTACCATGCTCAAAACAGAAACTTAGTGCACTTGGCTGCCCTTAGGAACCTCAATAAGGATGAGGATTGGGATTAGACGTGCGTTGAGTCCTTTTGATAATGAGCTCATTTCTCTCAATAGGCCGATGATAATATAATGCATCTCTGAACTTAGTTTACCACTATTAATCACGGATCATTTACTACTTAAAACGGATAATTTGTTGTAGGTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGA</genome_strand>
        <mrna_strand>CTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGACTTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATAGGCGGAAGAATCACGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAACTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAANGCCTTTATATATAGAGCCTTCGATTCTGGAGAAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210532" ref_strand="+" ref_description="SGN-E210532 [cLEC-35-N7]">
      <seq>tggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgctagataggaaggcaaagagaattcttgtagcaggaaaacatgctgacgaccttggattccaatgtggagggtggactaaaacatgggaaggaatgggcggaagaatcacgattggtacaactattctggaagctattaaagatgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33145" stop="36774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33445" g_stop="33516" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="177" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="360" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35410" g_stop="35611" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="562" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36440" g_stop="36474" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="597" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E210532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33445" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35611"/>
          <exon e_start="36440" e_stop="36474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTGGTAAGTTATGCTTCCTCTGTTCTAATTATATGACACTCATTCATATTTACTACATGAAAAAAACAATTTCAACTTTCTATATTGTGAAAACTCTGACTTTAGGTGTACCATTTTATTCTTAGTGACATACTCCTATAGATATAGAAATATTTGACATGTTTTAGTTCACGAGTTTTATGGGTACTTTTGGTATGTGTAGAAAGTCTTTGGTTTTTCTTAAATTTTGTGCCCAGCCAAGCACCGCCATATAAAATGGAGAGAGTAATGGAAAGATGGCATCAGTCGTTACTTATACTTTCATACAACTAGAGCATTATAGTTTAGAGTAGCATCTTTCTTTCCTTCTTTCTTACATGGACTCAAATTTACCACAAGTTTAGGAACAATATCTCAAGAGTTCCGCTCCCATTTCTTGTGGGTGATTTGTAAAAACCCTGTATGTTTGATTGTTTTCTCGCAAGAAATCTTAAGCTATAATGTCATAAAATGCCTGATATCGCCAGCTGATAGCATAATTTTGTATGACATATGTAAGCTAGTGCATACTCTTGTTAGCCTTGCACAAAGATCTTGATGTACTAGGAACCTCAATAGACCCAATGTAGTCCGGTCCTTCTGCGTACCATGCTCAAAACAGAAACTTAGTGCACTTGGCTGCCCTTAGGAACCTCAATAAGGATGAGGATTGGGATTAGACGTGCGTTGAGTCCTTTTGATAATGAGCTCATTTCTCTCAATAGGCCGATGATAATATAATGCATCTCTGAACTTAGTTTACCACTATTAATCACGGATCATTTACTACTTAAAACGGATAATTTGTTGTAGGTACAACTATTCTGGAAGCTATTAAAGATGCTGTT</genome_strand>
        <mrna_strand>TGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACTATTCTGGAAGCTATTAAAGATGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256880" ref_strand="+" ref_description="SGN-E256880 [cLEG-40-J10]">
      <seq>cggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgctagataggaaggcaaagagaattcttgtagcaggaaaacatgctgacgaccttggattccaatgtggagggtggactaaaacatgggaaggaatgggcggaagaatcacgattggtacaactattctggaagctattaaagatgctgttggaggggaaacagaactggtatatgaagaaaatccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34002" stop="36813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="115" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="298" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34675" i_stop="35425" i_length="751">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35426" g_stop="35611" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="484" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36440" g_stop="36513" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="558" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E256880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35426" e_stop="35611"/>
          <exon e_start="36440" e_stop="36513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTGGTAAGTTATGCTTCCTCTGTTCTAATTATATGACACTCATTCATATTTACTACATGAAAAAAACAATTTCAACTTTCTATATTGTGAAAACTCTGACTTTAGGTGTACCATTTTATTCTTAGTGACATACTCCTATAGATATAGAAATATTTGACATGTTTTAGTTCACGAGTTTTATGGGTACTTTTGGTATGTGTAGAAAGTCTTTGGTTTTTCTTAAATTTTGTGCCCAGCCAAGCACCGCCATATAAAATGGAGAGAGTAATGGAAAGATGGCATCAGTCGTTACTTATACTTTCATACAACTAGAGCATTATAGTTTAGAGTAGCATCTTTCTTTCCTTCTTTCTTACATGGACTCAAATTTACCACAAGTTTAGGAACAATATCTCAAGAGTTCCGCTCCCATTTCTTGTGGGTGATTTGTAAAAACCCTGTATGTTTGATTGTTTTCTCGCAAGAAATCTTAAGCTATAATGTCATAAAATGCCTGATATCGCCAGCTGATAGCATAATTTTGTATGACATATGTAAGCTAGTGCATACTCTTGTTAGCCTTGCACAAAGATCTTGATGTACTAGGAACCTCAATAGACCCAATGTAGTCCGGTCCTTCTGCGTACCATGCTCAAAACAGAAACTTAGTGCACTTGGCTGCCCTTAGGAACCTCAATAAGGATGAGGATTGGGATTAGACGTGCGTTGAGTCCTTTTGATAATGAGCTCATTTCTCTCAATAGGCCGATGATAATATAATGCATCTCTGAACTTAGTTTACCACTATTAATCACGGATCATTTACTACTTAAAACGGATAATTTGTTGTAGGTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCA</genome_strand>
        <mrna_strand>GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248840" ref_strand="+" ref_description="SGN-E248840 [cLEF-49-I21]">
      <seq>tcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgctagataggaaggcaaagagaattcttgtagcaggaaaacatgctgacgaccttggattccaatgtggagggtggactaaaacatgggaaggaatgggcggaagaatcacgattggtacaactattctggaagctattaaagatgctgttggaggggaaacagaactggtatatgaagaaaatccttcaccagacacctttgcgagtcaagacttctcttattgcattgtagttgttggtgaacctccctattgtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34093" stop="36884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34393" g_stop="34412" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="203" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35410" g_stop="35611" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="405" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36440" g_stop="36584" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="550" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E248840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34393" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35611"/>
          <exon e_start="36440" e_stop="36584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTGGTAAGTTATGCTTCCTCTGTTCTAATTATATGACACTCATTCATATTTACTACATGAAAAAAACAATTTCAACTTTCTATATTGTGAAAACTCTGACTTTAGGTGTACCATTTTATTCTTAGTGACATACTCCTATAGATATAGAAATATTTGACATGTTTTAGTTCACGAGTTTTATGGGTACTTTTGGTATGTGTAGAAAGTCTTTGGTTTTTCTTAAATTTTGTGCCCAGCCAAGCACCGCCATATAAAATGGAGAGAGTAATGGAAAGATGGCATCAGTCGTTACTTATACTTTCATACAACTAGAGCATTATAGTTTAGAGTAGCATCTTTCTTTCCTTCTTTCTTACATGGACTCAAATTTACCACAAGTTTAGGAACAATATCTCAAGAGTTCCGCTCCCATTTCTTGTGGGTGATTTGTAAAAACCCTGTATGTTTGATTGTTTTCTCGCAAGAAATCTTAAGCTATAATGTCATAAAATGCCTGATATCGCCAGCTGATAGCATAATTTTGTATGACATATGTAAGCTAGTGCATACTCTTGTTAGCCTTGCACAAAGATCTTGATGTACTAGGAACCTCAATAGACCCAATGTAGTCCGGTCCTTCTGCGTACCATGCTCAAAACAGAAACTTAGTGCACTTGGCTGCCCTTAGGAACCTCAATAAGGATGAGGATTGGGATTAGACGTGCGTTGAGTCCTTTTGATAATGAGCTCATTTCTCTCAATAGGCCGATGATAATATAATGCATCTCTGAACTTAGTTTACCACTATTAATCACGGATCATTTACTACTTAAAACGGATAATTTGTTGTAGGTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAG</genome_strand>
        <mrna_strand>TCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413375" ref_strand="+" ref_description="SGN-E413375 [STM-17-F8]">
      <seq>caatctttttttagtccgcatctttatagacatgtttatttcactaaacctctcttcgacacatctcgtctagagcaccttgtttttactagttaatccgtagccgaatgaaaagagaggttcataggagttctgttcttgatgcaggggtaattgatctacacttttaaaccatgtcatagggagccttccatggaattcaaaatctccgaaaatgacatcagtgataccagttccctcggtacccggtaaccatgcagcaacaaaggcctccattttctccagaatcgaaggctctatatataaaggccttccggagatcaatatcaccaatgttggaactctgcctgcaaccaagcttattagttcttctccgccaagaggaattctgaggtcttggctgtctccaccgctttcgcaatagggaggttcaccaacaactacaatggaataagagaagtcttgaattgcaaaggtgtctggtgacggattttcctcatataccagttctgtttcccctctaacagcatctttaatagcttccagaatagttgtacctacaacaaattatccgttttaagtagtaaatgatccatgattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37297" stop="36094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36997" g_stop="36394" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E413375" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36997" e_stop="36394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTTTCTGATAGTCCGCATCTTTATAGACATGTCTATTTCACTAAACCTTTCTTCGACACATCTCGTCTAGATCACCTTGTTTTTACTTGTTAATCCGTAGCCGAATGGAAAGAGAGGTTCATAGGAGTTCTGTTCTTGATGCAGGGGTAATTGATCTACACTCTTAAACCATGTCATAGGGAGGGTTCCATGGAATTCAAAATCTCCGAATATGACATCAGTGATACCAGTTCCCTCAGTGCCCGGTAACCATGCAGCAACGAAGGCATCCATTTTCTCCAGAATCGAAGGCTCTATATGTAAAGGCCTTCCGGAGATCAATATCACCAACGTTGGAACTCTGTCTGCAACCAAGCTTATTAGTTCTTCTCCGCCAAGAGGAATTCTGAGGTCTTGGCTGTCTCCACCGCTTTCACAATAGGGAGGTTCACCAACAACTACAATGCAATAAGAGAAGTCTTGACTCGCAAAGGTGTCTGGTGAAGGATTTTCTTCATATACCAGTTCTGTTTCCCCTCCAACAGCATCTTTAATAGCTTCCAGAATAGTTGTACCTACAACAAATTATCCGTTTTAAGTAGTAAATGATCCGTGATTAAT</genome_strand>
        <mrna_strand>CAATCTTTTT-TTAGTCCGCATCTTTATAGACATGTTTATTTCACTAAACCTCTCTTCGACACATCTCGTCTAGAGCACCTTGTTTTTACTAGTTAATCCGTAGCCGAATGAAAAGAGAGGTTCATAGGAGTTCTGTTCTTGATGCAGGGGTAATTGATCTACACTTTTAAACCATGTCATAGGGAGCCTTCCATGGAATTCAAAATCTCCGAAAATGACATCAGTGATACCAGTTCCCTCGGTACCCGGTAACCATGCAGCAACAAAGGCCTCCATTTTCTCCAGAATCGAAGGCTCTATATATAAAGGCCTTCCGGAGATCAATATCACCAATGTTGGAACTCTGCCTGCAACCAAGCTTATTAGTTCTTCTCCGCCAAGAGGAATTCTGAGGTCTTGGCTGTCTCCACCGCTTTCGCAATAGGGAGGTTCACCAACAACTACAATGGAATAAGAGAAGTCTTGAATTGCAAAGGTGTCTGGTGACGGATTTTCCTCATATACCAGTTCTGTTTCCCCTCTAACAGCATCTTTAATAGCTTCCAGAATAGTTGTACCTACAACAAATTATCCGTTTTAAGTAGTAAATGATCCATGATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371109" ref_strand="+" ref_description="SGN-E371109 [TUS-28-D1](-)">
      <seq>attgtagttgttggtgaacctccctattgtgaaagcggtggagacagccaagacctcagaattcctcttggcggagaagaactaataagcttggttgcagacagagttccaacgttggtgatattgatctccggaaggcctttacatatagagccttcgattctggagaaaatggatgccttcgttgctgcatggttaccgggcactgagggaactggtatcactgatgtcatattcggagattttgaattccatggaaccctccctatgacatggtttaagagtgtagatcaattacccctgcatcaagaacagaactcctatgaacctctctttccattcggctacggattaacaagtaaaaacaaggtgatctagacgagatgtgtcgaagaaaggtttagtgaaatagacatgtctataaagatgcggactatcagaaagactgtatgaagctttatgcaacctcttgtgtactttgtaccatttggtctctggcatatgatgttacattaagtccaaataattatatattatgtactattattaccatatgtgaacaaggaaaaatgcgtaacagtttcatttaataacgatataaaatattcaacttattttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36250" stop="37473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36550" g_stop="37170" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E371109" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36550" e_stop="37170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAGC</genome_strand>
        <mrna_strand>ATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240534" ref_strand="-" ref_description="SGN-E240534 [cLED-21-I13]">
      <seq>tcgattctggagaaaatggatgccttcgttgctgcatggttaccgggcactgagggaactggtatcactgatgtcatattcggagattttgaattccatggaaccctccctatgacatggtttaagagtgtagatcaattacccctgcatcaagaacagaactcctatgaacctctctttccattcggctacggattaacaagtaaaaacaaggtgatctagacgagatgtgtcgaagaaaggtttagtgaaatagacatgtctataaagatgcggactatcagaaagactgtatgaagctttatgcaacctcttgtgtactttgtaccatttggtctctggcatatgatgttacattaagtccaaataattatatattatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36406" stop="37403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36706" g_stop="37086" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="400"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E240534" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240534" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36706" e_stop="37086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTAT</genome_strand>
        <mrna_strand>TCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224798" ref_strand="+" ref_description="SGN-E224798 [cLEL-27-B23](-)">
      <seq>tggtatcactgatgtcatattcggagattttgaattccatggaaccctccctatgacatggtttaagagtgtagatcaattacccctgcatcaagaacagaactcctatgaacctctctttccattcggctacggattaacaagtaaaaacaaggtgatctagacgagatgtgtcgaagaaaggtttagtgaaatagacatgtctataaagatgcggactatcagaaagactgtatgaagctttatgcaacctcttgtgtactttgtaccatttggtctctggcatatgatgttacattaagtccaaataattatatattatgtactattattccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36465" stop="37403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36765" g_stop="37100" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="369"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E224798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36765" e_stop="37100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACC</genome_strand>
        <mrna_strand>TGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229036" ref_strand="+" ref_description="SGN-E229036 [cLEL-29-D10](-)">
      <seq>tccatggaaccctccctatgacatggtttaagagtgcagatcaattacccctgcatcaagaacagaactcctatgaacctctctttccattgggctacggattaacaagtaaaaacaaggtgatctaaacaaaatgtgtcgaaaaaaggtttagtgaaataaacatgtctataaaaatgcggactatcagaaagcctgtatgaagctttatgcaacctcttgtgtactttggaccatttggtctctggcatatgatgttacattaagtccaaataattatatattatgtactattattccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36500" stop="37403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36800" g_stop="37100" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="333"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E229036" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36800" e_stop="37100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACC</genome_strand>
        <mrna_strand>TCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGCAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTGGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAAACAAAATGTGTCGAAAAAAGGTTTAGTGAAATAAACATGTCTATAAAAATGCGGACTATCAGAAAGCCTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGGACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224442" ref_strand="+" ref_description="SGN-E224442 [cLEL-27-B23](-)">
      <seq>gtagatcaattacccctgcatcaagaacagaactcctatgaacctctctttccattcggctacggattaacaagtaaaaacaaggtgatctagaccaaatgtgtcgaaaaaaggtttagtgaaataaacatgtctataaagatgcggactatcagaaagactgtatgaagctttatgcaacctcttgtggactttgtaccaattggtctctggcatatgatgttacattaagtcccaataattatatattatgggctattattcccccnccaagaacaaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36535" stop="82852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36835" g_stop="37104" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37849" g_stop="37877" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="299" r_length="29" r_score="0.690"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E224442" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36835" e_stop="37104"/>
          <exon e_start="37849" e_stop="37877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAGCATATTCTTTAAAATTCTTAACCATTTGAAAAAATTACAAAAAATTTTATCCTCCCTTATTTTCGAATGAATCACATTACACGATCGAACAACTGTGAATGCAAAAATAACAAAGTTATGAAAAAAACAATTCAAAACACTTTATATAATAAAAGTAGTGTCTTCTTTACTATGTAAAAAGAAAAAAAACATGTAAAAAATTGATTTAATGGCCATGAACTTACATTGATGATGAAGTCTGACTCAGTTTATTACATGTATAATTAATAACACTTCATATTGTTTATATAGATATAATATACCTTAATTTTCTCTCTCTATTTTACTTGTGCAAATTAATAATGTAAATATTACTAAAAATTACAATATTTTAAGGGGAAAATACCAAATAAAATAAAATAAGAAAATATGAGAGAATTAAGTTCAATAATATAATGGACAAAGAAAAGGAAAGTTTTCGTAAAGAATCTTTTAATAACATTGAAAAAAAAGTCTGAGACTAGGGAAAAAAAGTGCCATAATATTTTTTCCTTTTAATTTTCTTCCAATTAAATTTTCCTAAATTATATTTCCTAACATGCTTCTTTTGAATTGTTCATATATAAATATTTTCCAAGTCTATATCATGGTAATTTTCATTTTGAAGAATATTTTTTAATTATTGATGCAATTAAAACAGAAGGAAAAAAAAAAAGAAGAAAAATAATG</genome_strand>
        <mrna_strand>GTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACCAAATGTGTCGAAAAAAGGTTTAGTGAAATAAACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGGACTTTGTACCAATTGGTCTCTGGCATATGATGTTACATTAAGTCCCAATAATTATATATTATGGGCTATTATTCCCCCNC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAACAAACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228748" ref_strand="+" ref_description="SGN-E228748 [cLEL-29-D10](-)">
      <seq>aagtaaaaacaaggtgatctagacgagatgtgtcgaagaaaggtttagtgaaatagacatgtctataaagatgcggactatcaaaaagactgtatgaagctttatgcaacctcttgtgtactttgtaccatttggtctctggcatatgatgttacattaagtccaaataattatatattatgtactattattaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36606" stop="82322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36906" g_stop="37104" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37849" g_stop="37876" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="227" r_length="28" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E228748" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36906" e_stop="37104"/>
          <exon e_start="37849" e_stop="37876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAGCATATTCTTTAAAATTCTTAACCATTTGAAAAAATTACAAAAAATTTTATCCTCCCTTATTTTCGAATGAATCACATTACACGATCGAACAACTGTGAATGCAAAAATAACAAAGTTATGAAAAAAACAATTCAAAACACTTTATATAATAAAAGTAGTGTCTTCTTTACTATGTAAAAAGAAAAAAAACATGTAAAAAATTGATTTAATGGCCATGAACTTACATTGATGATGAAGTCTGACTCAGTTTATTACATGTATAATTAATAACACTTCATATTGTTTATATAGATATAATATACCTTAATTTTCTCTCTCTATTTTACTTGTGCAAATTAATAATGTAAATATTACTAAAAATTACAATATTTTAAGGGGAAAATACCAAATAAAATAAAATAAGAAAATATGAGAGAATTAAGTTCAATAATATAATGGACAAAGAAAAGGAAAGTTTTCGTAAAGAATCTTTTAATAACATTGAAAAAAAAGTCTGAGACTAGGGAAAAAAAGTGCCATAATATTTTTTCCTTTTAATTTTCTTCCAATTAAATTTTCCTAAATTATATTTCCTAACATGCTTCTTTTGAATTGTTCATATATAAATATTTTCCAAGTCTATATCATGGTAATTTTCATTTTGAAGAATATTTTTTAATTATTGATGCAATTAAAACAGAAGGAAAAAAAAAAAGAAGAAAAATAAT</genome_strand>
        <mrna_strand>AAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAAAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204814" ref_strand="+" ref_description="SGN-E204814 [cLEC-14-G16]">
      <seq>atgaagcagggcacgcagtagttgggactgctgttgcaaatcttctttccgggcagccacgggttgagaagctgagcatattgccaagatctggaggggctttaggatttacttatattcctccaaccaatgaggacagatatctgctctttgttgatgaattgcgtgggaggttggtcactcttcttggtggacgtgctgcggaagaagtattgtactctggacgtgtatctactggtgctcttgatgatatacgcagagctacagacatggcctacaaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40071" stop="42358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40371" g_stop="40438" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40439" i_stop="41755" i_length="1317">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41756" g_stop="42058" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="371" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E204814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40371" e_stop="40438"/>
          <exon e_start="41756" e_stop="42058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAGGTGATCATTATTATCACTTTCTCTGAGAAATTCTTGTTCTTCCTGATTTACTGCAAGTTCGTGTTATTTGATTTGTGTTCCACTGGATAACATCTGACATCTAAAAAGAATTGATATGATAGAACTACTCTAGAAATAGAATTTCTTAAGTTTGTCATGTTTCAGAACAGGAAAATCAAATGTCTGCATGTCTTGAACAGCCTGGTTTTGACCTTTTCCAGGGACATTATGCATCAACAAAACCACTCCCCTGCATTTGGTATGGGACCTCTAATAGTGTTTAAATTGGGTTCACAGTTTGTTCTTGGGGTGATGGATTATGGAGAAATATTTGGATCATTGATCAATGCAGTCATCTGTGACCTATCCTTCTCAATGTAGTAGCACTGTTATTGAAGCAGAATAAAATAAAATATAAAAAATAGAAAATGGAGAAGTAGTGGCTTATTGGTGTCCTGTTGATTGATAAGAATGTCCAAAATGGAAAAATGCCTGTGTTTGGATCTAATACTTTATTCTAATAAAAAATGGGTGTCTGGATTTGATAAGGAATAGGAAATGACTTGGTTCTGATGTCAGACTTGGGTACAACTCAAATACGCTACTGATTGTTTGACCTTTATTTTCCCTAGAAAGGCAACTCTGGAAGAATGTTATATGTACATAATGACCTCACTTATCAGGAAAAAACAATATAAGGTTCTTTCTCCCTATCTCTCTCTTTTCTGGTGTTCTCCAGATTCATGGAAATATATTTTCTGGGTAAAAGGGTTGTATGCCTTCCTTAATGTTGTTTCTCCTCAACAAAAAAAGAAGAAATAGTATCATAGTTCTATATTTCTGGCTTGAGTAGGTGAGGTATTTTATTCCATGATTTTGGTGTTGGTAAATAGAGAGCGAGCGACTCACTCTCCAACCCCCCAACTTTGTTTTTCTCAATGTGAAAGTTGTTACTAATGAGAAATCTCAAGTGATTTTCCTTGTTATTTCCCCTTCCTCTCTTTCTTAATTTTGACGGCACCAGTTCATTTCTTTTACCTCCCCCAACTATCTGTTTCAAATGAACCATACCAACATGGTTCTGGAAGTGGTCTTCCTGCAAGTTCTCTCAATATCCTGATCCTTTTCATGGGAAAGTTTGCAAGTGAGGTCAGCCATTTCTATATTGGTACAGATGCTTAAAGTCTTTTGCTAAAATCAGTACTTTGCTTCTACTCAACCTTGCTTTTCTCAAACTATGATTGTTGCTTTTGTTGTACATAATTGGGATTAGTGCAGTTATGGTATTAATAACAGTTCTCTTTTTTCGCTAACCAGAAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATG</genome_strand>
        <mrna_strand>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710903" ref_strand="+" ref_description="SGN-E710903 [FA57BC06]">
      <seq>cccttttctttgttgatgaattgcgtgggaggttggtcactcctcttggtggacgtgctgcggaagaagtattgtactctggacgtgtatctactggtgctcttgatgatatacgcagagctacagacatggcctacaaggcagttgctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggccaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgcgagctcaattggaagagaatgagaaagtacaacgcgaccaactaccagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggccaaacaaggatctttacttccactgcaagcaggctctggatgacagaaagcgccagcttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41531" stop="43267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41829" g_stop="42076" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="372" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="42967" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="521" r_length="149" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E710903" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41829" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="42967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGG-CAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACC</genome_strand>
        <mrna_strand>CCCTTTTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCCTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTTGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGCCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGCGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTACAACGCGACCAACTACCAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCCAAACAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGCGCCAGCTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738320" ref_strand="+" ref_description="SGN-E738320 [LC13AH11]">
      <seq>gtggatcccccgggcctacaaggcagtggctgaatcttgtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaagtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41659" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41946" g_stop="42076" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="254" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="43467" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="902" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="903" polyA_stop="914"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E738320" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41946" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>GTG-GATCCCCCGGGCCTACAAGGCAGTGGCTGAATCTTGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAAGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739437" ref_strand="+" ref_description="SGN-E739437 [LC17BH01]">
      <seq>gtggatcccccgggcctacaggcagtggctgaatctggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41659" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41946" g_stop="42076" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="253" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="43466" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="900" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E739437" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41946" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTA</genome_strand>
        <mrna_strand>GTG-GATCCCCCGGGCCTAC-AGGCAGTGGCTGAATCTGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735941" ref_strand="+" ref_description="SGN-E735941 [LC03DA10]">
      <seq>gcggccgctctgaatagtggatcccccgggcctacaaggcagtggctgactatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatatttgtatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41659" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41959" g_stop="42076" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="146" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="270" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="43467" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="918" r_length="648" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="919" polyA_stop="931"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E735941" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41959" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>GGCCTACAAGGCAGTGGCTGACTATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTTGTATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735465" ref_strand="+" ref_description="SGN-E735465 [LC01CG05]">
      <seq>ctacaggcagtggctgaatatgtgtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaagtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41662" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41962" g_stop="42076" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="239" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="43467" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="887" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="888" polyA_stop="898"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E735465" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41962" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGCAGTGGCTGAATATG-GTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>CTACA-GGCAGTGGCTGAATATGTGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAAGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740140" ref_strand="+" ref_description="SGN-E740140 [LC20BA06]">
      <seq>ctacaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgaatatgagacaaagtttcagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41662" stop="43766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41962" g_stop="42076" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="43467" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="886" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="887" polyA_stop="896"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E740140" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41962" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAG</genome_strand>
        <mrna_strand>CTACA-GGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGAATATGAGACAAAGTTTCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736827" ref_strand="+" ref_description="SGN-E736827 [LC07BH03]">
      <seq>ctacaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccctgtctaatgtttgtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41662" stop="43709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41962" g_stop="42076" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="43409" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="828" r_length="590" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E736827" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41962" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGA</genome_strand>
        <mrna_strand>CTACA-GGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCCTGTCTAATGTTTGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281960" ref_strand="+" ref_description="SGN-E281960 [cLES-2-A2]">
      <seq>tgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgcgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaagtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaatgatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41677" stop="43266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41977" g_stop="42076" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="224" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42820" g_stop="42966" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="371" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E281960" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41977" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="42966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAAC</genome_strand>
        <mrna_strand>TGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGCGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAAGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAATGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415550" ref_strand="+" ref_description="SGN-E415550 [STM-21-D21]">
      <seq>gagagagagaactagtctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaggttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgaacaactacaagaatggttgagcatggtcgttgcaccagcggaacttaatttttttataaagggcaaacaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacacagtcaacagtacaaaaatgaatttcgagtaaggacttccacaccttcatctgtgctctcaagggaaacaaagctatattcctgaaccagatgggcatcacttattggcatccagatagcgtgattttgcatgtgttagtaaggtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattggtaactcgaagtgaaggcgtacacaaaagatctagccaagagtttgttggttctagaggtgaaatgaaaaataggctcgtgacctgagtgatgtcggttggtattttcttctacatcacttgtacatgtgccaattattcttagtatttacacaagaatcaatacctttatattgtaatatacatctgtactgcagctttacaagaaagcatccatgtctaatgttgtgggagaaggtgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41933" stop="43714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42232" g_stop="42334" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42820" g_stop="43421" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="698" r_length="595" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E415550" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42232" e_stop="42334"/>
          <exon e_start="42820" e_stop="43421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATG-AAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACT</genome_strand>
        <mrna_strand>GAGAGAGAGAACTAGTCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAGGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAACAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCGGAACTTAATTTTTTTATAAAGGGCAAACAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACACAGTCAAC--AGTACAAAAATGAATTTCGAGTAAGGACTTCCACACCTTCATCTGTGCTCTCAAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTATTGGCATCCAGATAGCGTGATTTTGCATGTGTTAGTAAGGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGGTAACTCGAAGTGAAGGCGTACACAAAAGATCTAGCCAAGAGTTTGTTGG-T-TCTAGAGGTGAAATGAAAAATAGGCTCGTGACCTGAGTGATGTCGGTTGGTATTTTCTTCTACATCACTTGTACATGTG-CCAATTATTCTTAGTATTTACACAAGAATCAATACCTTTATATTGTAATATACATCTGTACTGCAGCTTTACAAGAAAGCATCCATGTCTAATGTTGTGGGAGAA-G-GTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437212" ref_strand="+" ref_description="SGN-E437212 [cSTA-3-E17]">
      <seq>gagagagagaactagtctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaggttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgaacaactacaagaatggttgagcatggtcgttgcaccagcggaacttaatttttttataaagggcaaacaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacacagtcaacagtacaaaaatgaatttcgagtaaggacttccacaccttcatctgtgctctcaagggaaacaaagctatattcctgaaccagatgggcatcacttattggcatccagatagcgtgattttgcatgtgttagtaaggtaattgacagctacttaacttctacaaacaccattgttatataccacgatcacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41933" stop="43471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42232" g_stop="42334" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42820" g_stop="43171" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="452" r_length="349" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E437212" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42232" e_stop="42334"/>
          <exon e_start="42820" e_stop="43171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGAT</genome_strand>
        <mrna_strand>GAGAGAGAGAACTAGTCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAGGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAACAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCGGAACTTAATTTTTTTATAAAGGGCAAACAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACACAGTCAAC--AGTACAAAAATGAATTTCGAGTAAGGACTTCCACACCTTCATCTGTGCTCTCAAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTATTGGCATCCAGATAGCGTGATTTTGCATGTGTTAGTAAGGT-AATTGACAGCTACTTAACTTCTACAAACACCATTGTTATATACCACGATCACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340881" ref_strand="+" ref_description="SGN-E340881 [cTOF-5-A23]">
      <seq>taatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaagtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataaatcttgacttgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41994" stop="43801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42294" g_stop="42334" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42820" g_stop="43502" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="724" r_length="683" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E340881" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42294" e_stop="42334"/>
          <exon e_start="42820" e_stop="43502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAG</genome_strand>
        <mrna_strand>TAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAAGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAAATCTTGACTTGTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415551" ref_strand="-" ref_description="SGN-E415551 [STM-21-D21]">
      <seq>gggttgggagctcaattggaagagaatgagaaagtagaaggtgaacaactacaagaatggttgagcatggtcgttgcaccagcggaacttaatttttttataaagggcaaacaaggatctttacttccactgcaagcaggctttggatgacagaaagtgcaagcttaacacagtcaacagtacaaaaatgaatttcgagtaaggacttccacaccttcatctgtgctctcaagggaaacaaagctatattcctgaaccagatgggcatcacttattggcatccagatagcgtgattttgcatgtgttagtaaggtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattggtaactcgaagtgaaggcgtacacaaaagatctagccaagagtttgttggttctagaggtgaaatgaaaaataggctcgtgacctgagtgatgtcggttggtattttcttctacatcacttgtacatgtgccaattattcttagtatttacacaagaatcaatacctttatattgtaatatacatctgtactgcagcttacaaagaagcaatccatgtctaatgttgtgggagaaggtgaaactgtgtatacaatgttatctttctgattatgagacaaagtatcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaacattctgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42013" stop="43821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42313" g_stop="42334" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42820" g_stop="43519" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="715" r_length="693" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="738"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E415551" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42313" e_stop="42334"/>
          <exon e_start="42820" e_stop="43519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATG-AAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATA</genome_strand>
        <mrna_strand>GGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAACAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCGGAACTTAATTTTTTTATAAAGGGCAAACAAGGATCTTTACTTCCACTGCAAGCAGGCTTTGGATGACAGAAAGTGCAAGCTTAACACAGTCAAC--AGTACAAAAATGAATTTCGAGTAAGGACTTCCACACCTTCATCTGTGCTCTCAAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTATTGGCATCCAGATAGCGTGATTTTGCATGTGTTAGTAAGGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGGTAACTCGAAGTGAAGGCGTACACAAAAGATCTAGCCAAGAGTTTGTTGG-T-TCTAGAGGTGAAATGAAAAATAGGCTCGTGACCTGAGTGATGTCGGTTGGTATTTTCTTCTACATCACTTGTACATGTG-CCAATTATTCTTAGTATTTACACAAGAATCAATACCTTTATATTGTAATATACATCTGTACTGCAGCTTACAAAGAAGCAATCCATGTCTAATGTTGTGGGAGAA-G-GTGAAACTGTGTATACAATGTTATCTTTCTGATTATGAGACAAAGTATCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734383" ref_strand="+" ref_description="SGN-E734383 [LB12CB03]">
      <seq>ctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataananaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42518" stop="43777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42820" g_stop="43476" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="669" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="691"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E734383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42820" e_stop="43476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</genome_strand>
        <mrna_strand>AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612020" ref_strand="+" ref_description="SGN-E612020 [61778]">
      <seq>cgaatttcgagtaaggacttccacgccttcatctgtgctctcaagggaaacaaagctatattcctgatccagatgggcatcacttgctggcatccagacagtgtgattttgcatgtgttagtaaggtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattggtaattcgaaatgaaggcgtattcaaaagatctagccaagagtttcttggttctagaggtgaaatgaaaaataggctcgtgacctgagtgatgtcggttcgtattttcttctacatcacttgtacatgtgccaattattcttagtaattacacaagaatcaatacctttatattgtaatatacatctgtactgcatcttacaaagaagcaatccatgtctaatgttgtgggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42688" stop="43709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42988" g_stop="43409" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E612020" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42988" e_stop="43409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATG-AAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGA</genome_strand>
        <mrna_strand>CGAATTTCGAGTAAGGACTTCCACGCCTTCATCTGTGCTCTCAAGGGAAACAAAGCTATATTCCTGATCCAGATGGGCATCACTTGCTGGCATCCAGACAGTGTGATTTTGCATGTGTTAGTAAGGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGGTAATTCGAAATGAAGGCGTATTCAAAAGATCTAGCCAAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAAATAGGCTCGTGACCTGAGTGATGTCGGTTCGTATTTTCTTCTACATCACTTGTACATGTG-CCAATTATTCTTAGTAATTACACAAGAATCAATACCTTTATATTGTAATATACATCTGTACTGCATCTTACAAAGAAGCAATCCATGTCTAATGTTGTGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711797" ref_strand="+" ref_description="SGN-E711797 [FB03AA11]">
      <seq>ttcgaataaggatctgtacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtaattgacagctacgtaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctagaggtgaaatgaaaatagtttaggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtgacaattccttatgcttgtggttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42693" stop="43846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42993" g_stop="43546" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="569"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E711797" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42993" e_stop="43546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATG-AAA-A---TAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>TTCGAATAAGGATCTGTACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGC-------A-T---GT-AATTGACAGCTACGTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGTTTAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTATGCTTGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692354" ref_strand="+" ref_description="SGN-E692354 [LH_Ea08H24]">
      <seq>ttggcatccagacagcgtgattttgcatgtgttagtaacgtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccgagagtttcttggttctagaggtgaaatgaaaataggctcgtgatcacagtgatgtctgttggtattttcttctacatcacttgtacatgtgccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtggagctgtgtatacaatgtaatctttctgattatgagacaaagtatcagtaggttgccataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42775" stop="43777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43074" g_stop="43476" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="414"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E692354" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43074" e_stop="43476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</genome_strand>
        <mrna_strand>TTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAACGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCGAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGGCTCGTGATCACAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTG-CCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGGAGCTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTATCAGTAGGTTGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696194" ref_strand="+" ref_description="SGN-E696194 [LH_Ea08H24](-)">
      <seq>ctggcatccagacagcgtgattttgcatgtgttagtaaggtaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccgagagtttcttggttctagaggtgaaatgaaaataggctcgtgatcacagtgatgtctgttggtattttcttttacatcacttgtacatgtgccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtggagctgtgtatacaatgtaatctttctgattaagggacaaagtatcagtaggttgcctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42774" stop="43777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43074" g_stop="43473" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="419"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E696194" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43074" e_stop="43473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCC</genome_strand>
        <mrna_strand>CTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGT-AATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCGAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGGCTCGTGATCACAGTGATGTCTGTTGGTATTTTCTTTTACATCACTTGTACATGTG-CCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGGAGCTGTGTATACAATGTAATCTTTCTGATTAAGGGACAAAGTATCAGTAGGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220268" ref_strand="+" ref_description="SGN-E220268 [cLEL-12-D18](-)">
      <seq>gtgttagtaaggtaaattgacagcacttagactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtgacaattccttgtgcttgtggttaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42802" stop="43846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43102" g_stop="43546" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="460"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E220268" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43102" e_stop="43546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTAGTAAGGTAAATTGACAGCTACTTA-ACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>GTGTTAGTAAGGTAAATTGACAGC-ACTTAGACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220170" ref_strand="+" ref_description="SGN-E220170 [cLEL-12-D18](-)">
      <seq>tttcttggttctctaaaggtgaaatgaaaataggctcgtgatcagagtaatgtctgttggtaattttcttctacatcacttgaacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtaacaattccttgtgcatgtggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42916" stop="43846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43216" g_stop="43546" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="347"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E220170" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43216" e_stop="43546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGT-ATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>TTTCTTGGTTCTCTAAAGGTGAAATGAAAATAGGCTCGTGATCAGAGTAATGTCTGTTGGTAATTTTCTTCTACATCACTTGAACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTAACAATTCCTTGTGCATGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48025" stop="46618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47725" g_stop="46918" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47725" e_stop="46918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48684" stop="47436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48384" g_stop="47736" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48384" e_stop="47736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48683" stop="47699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48383" g_stop="47999" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48383" e_stop="47999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320376" ref_strand="+" ref_description="SGN-E320376 [cTOB-22-E4]">
      <seq>ggaaagataattggtggtggtccaagggcaggaaattgaggtgggaaccgatagttcaagctcaagaaattggggttttgttattgcaattggggattgtgatgtttgttatgagattactaagacccggtttgccattacccgggtcggatcctagagctccgacaatgtttgtaactgttccatatagtgagtttttgagtaagataaatagtaatcaggtgcagaaagttgaggttgatggtgtacatataatgttcaaattgaagagtgaagtgagtagtagtgtaatagagactgaggttgtgaatgtgaatgaaaatggaaatagtaagttgcaagattctgaggcagtgataaggagtgtaactcctacaaagaaaattgtgtatactaccacgaggccgagtgatataaagaccccttatgagaaaatgcttgagaatgatgttgagtttggttctcccgataaacggtctggtggattcatgaactctgcactgataacattattttatattgctgtactagcggggcttcttcatcgcttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60306" stop="59194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60006" g_stop="59504" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E320376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60006" e_stop="59504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG</genome_strand>
        <mrna_strand>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330721" ref_strand="+" ref_description="SGN-E330721 [cTOD-8-M12]">
      <seq>acaaaagtgtctgaactaggggaaactatcacatttgctgatgttgcaggcgttgacgaggctaaggaggagctagaagaaattgtggaatttcttagaaatccagataagtatgtacggcttggtgcacgtcctcctcgtggtgttctactggttggtctccccgggacaggaaagacacttctagcaaaggctgttgctggggaagctgaggttccttttatcagttgttctgcaagtgagtttgtagaattgtatgtaggaatgggagcatcacgcgtccgtgacctgtttgcacgggcaaagaaggaggcaccttcaataatttttatcgatgagatagatgctgtggcaaaaagccgtgatggaaaattccgcattgtaagcaatgatgaaagagagcagacattgaaccaactactcactgagatggacggatttgacagtaattctgctgtaattgttcttggaacaacaaatcgctctgatgtcttagaccctgctcttcgccgacctgggagatttgaccgtgttgtaatggtggaagcgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65362" stop="67206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65662" g_stop="65748" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65749" i_stop="65881" i_length="133">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65882" g_stop="65947" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="153" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65948" i_stop="66286" i_length="339">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66287" g_stop="66472" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="339" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66473" i_stop="66626" i_length="154">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66627" g_stop="66713" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="426" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66714" i_stop="66790" i_length="77">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66791" g_stop="66904" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="540" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E330721" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65662" e_stop="65748"/>
          <exon e_start="65882" e_stop="65947"/>
          <exon e_start="66287" e_stop="66472"/>
          <exon e_start="66627" e_stop="66713"/>
          <exon e_start="66791" e_stop="66904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTGGTATTTTTTATTTTCATTGGTGAACGTTTCTTAACAACATATCTGCTATAAGTGCTGCATTTTGATACCATAAGAAGTTGATGAACAGTTAATAATTCATTGTTGTGGTGTTTTTAATTGCTTTTTTCCCCAGGAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTGGTGAGTTTCAAATTTGACGTAGTAATGTGAATGCTAGGTGGTTATCAAAGTGAGAAAGCTTTGAGAATAATGTACAATAATTGGAGGGTTCGAATAGTAACTCATTGAAACTTCTGATCTTTTGTTCTTGGTTTTTTTCCTGTTTCTGAAGGGATTCTCTCTCTATCCCTTCATGTCACTTTGTGATGCCTCTATGGTCAAATCACATCATTATTTCCTGCTAGTTTTGTTATGCGACTATTGACTGTCAGACCATTCTACTTGGGGACACCATTTGATTAGTTTTATGCTTTGTGATTCTCAATGTTTAGATTATAAAAATGGCTTTAATTGTTACAGGTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAGGTCACCTGTGCTTTCCTCCTCTTCTTCTTCCTCTACAAACTCAAAATATTCCAATAAAAAGTGTCATCATCATCTGGATGTGCAGACCTCCTCTTCTTTCTCTACAAACTCAAAATATTCTAAAAAAAAGTGTCATCATTTTCTGGATGTGCAGATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACTGTAAGACATACTGGTTTTGTGGTGCTGCATCACTTCAGTTTTTTCATAAGAAACTAATATCTTACAATAATCTGCAGGAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG</genome_strand>
        <mrna_strand>ACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTG.....................................................................................................................................GAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTG...................................................................................................................................................................................................................................................................................................................................................GTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAG..........................................................................................................................................................ATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACT.............................................................................GAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAACAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740820" ref_strand="+" ref_description="SGN-E740820 [LC23AB09]">
      <seq>cgttaagagaaaaatggcaaagagtggcattttggtaattgtttctgctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68461" stop="71400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68760" g_stop="68936" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="208" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="496" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="682" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="808" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71294" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="829" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E740820" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68760" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTT</genome_strand>
        <mrna_strand>CGTTAAGAGAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCTGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484333" ref_strand="+" ref_description="SGN-E484333 [cSTE-12-P14]">
      <seq>gttcagacaaatatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgacgagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctccgagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaagtgatgaagcctatatagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagccggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattgtgctcacactgttgatgctaaacaccgtcctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68461" stop="71123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68761" g_stop="68936" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="207" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="495" r_length="288" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70823" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="666" r_length="171" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E484333" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68761" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTC</genome_strand>
        <mrna_strand>GTTCAGACAAATATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGACGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCCGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCTATATAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCCGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTGTGCTCACACTGTTGATGCTAAACACCGTCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483387" ref_strand="+" ref_description="SGN-E483387 [cSTE-9-M1]">
      <seq>gttcagacaaatatggcaaagagtggcgttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaaacccactcttcgtcttctaaaccatttgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68461" stop="71121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68761" g_stop="68936" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="207" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="495" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70821" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="663" r_length="168" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E483387" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68761" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAAC</genome_strand>
        <mrna_strand>GTTCAGACAAATATGGCAAAGAGTGGCGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAACCCACTCTTCGTCTTCTAAA-CCATTTGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484135" ref_strand="+" ref_description="SGN-E484135 [cSTE-12-O3]">
      <seq>gttcagaccaaatatggcaaagagtggcgttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68461" stop="71105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68761" g_stop="68936" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="208" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="496" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70805" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="649" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E484135" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68761" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGA-CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTA</genome_strand>
        <mrna_strand>GTTCAGACCAAATATGGCAAAGAGTGGCGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259139" ref_strand="+" ref_description="SGN-E259139 [cLEG-41-J4]">
      <seq>ctgcaggcaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagaggactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="70737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68761" g_stop="68936" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="207" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70437" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="378" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E259139" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68761" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGT</genome_strand>
        <mrna_strand>CTGCAGGCAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGGACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315100" ref_strand="+" ref_description="SGN-E315100 [cTOA-24-G7]">
      <seq>ttcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagtcatctcagaatctagtattcctgttggtactatttttgacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="71327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="206" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="494" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="680" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71022" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="748" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E315100" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGAC</genome_strand>
        <mrna_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAG-TCATCTCAGAATCTAGTATTCCTGTTGGTACTATTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328714" ref_strand="+" ref_description="SGN-E328714 [cTOC-23-K12]">
      <seq>ttcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaagccatttgatgaactctttgttgattttgaggactttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="71148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="206" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="494" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="679" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70964" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="690" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E328714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGT</genome_strand>
        <mrna_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCT-AAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323117" ref_strand="+" ref_description="SGN-E323117 [cTOB-28-F21]">
      <seq>ttcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagnaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaagccatttgatgaactccttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="206" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="494" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70834" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="675" r_length="181" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E323117" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGNAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCT-AAGCCATTTGATGAACTCCTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315175" ref_strand="+" ref_description="SGN-E315175 [cTOA-24-N17]">
      <seq>ttcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="71124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="206" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="494" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70824" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="666" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E315175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCT</genome_strand>
        <mrna_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314579" ref_strand="+" ref_description="SGN-E314579 [cTOA-20-E12]">
      <seq>ttcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcgggggtgaccagtcaacaagcccactcttcgtcttctaaagccatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="71118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="206" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="494" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70818" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="660" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E314579" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATG</genome_strand>
        <mrna_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGGTGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315809" ref_strand="+" ref_description="SGN-E315809 [cTOA-26-H8]">
      <seq>ttcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttccctactattaagatattgagagatggaggaaagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68462" stop="70721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68762" g_stop="68936" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="206" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70421" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="361" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E315809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68762" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGT</genome_strand>
        <mrna_strand>TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCTACTATTAAGATATTGAGAGATGGAGGAAAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212612" ref_strand="+" ref_description="SGN-E212612 [cLEC-74-L22]">
      <seq>tcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtctttctaagccatttgatgaactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68463" stop="71126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68763" g_stop="68936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="205" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="493" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70826" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="667" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E212612" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68763" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTT</genome_strand>
        <mrna_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTTCTAAGCCATTTGATGAACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322978" ref_strand="+" ref_description="SGN-E322978 [cTOB-30-J1]">
      <seq>tcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgctgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaanaactgcgaggcgangtcgattttgctcacactgttgatgctaaacacctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68463" stop="71066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68763" g_stop="68936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="205" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="493" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="607" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E322978" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68763" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCT</genome_strand>
        <mrna_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGCT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAANAACTGCGAGGCGANGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247020" ref_strand="+" ref_description="SGN-E247020 [cLEF-41-M6]">
      <seq>tcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacanaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68463" stop="71017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68763" g_stop="68936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="205" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="493" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70717" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="558" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E247020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68763" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACT</genome_strand>
        <mrna_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACANACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322777" ref_strand="+" ref_description="SGN-E322777 [cTOB-30-I1]">
      <seq>tcagacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68463" stop="70669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68763" g_stop="68936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="205" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70369" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="308" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E322777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68763" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACG</genome_strand>
        <mrna_strand>TCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326107" ref_strand="+" ref_description="SGN-E326107 [cTOC-16-P7]">
      <seq>gacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactattttacgctagctgaaaactgcgaggcgagttcgattttgctcacactggtgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68466" stop="71125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68766" g_stop="68936" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="202" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="490" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70825" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="662" r_length="172" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E326107" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68766" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTT</genome_strand>
        <mrna_strand>GACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTTACGCTAGCTG-AAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGGTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327026" ref_strand="+" ref_description="SGN-E327026 [cTOC-18-O10]">
      <seq>gacaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68466" stop="70837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68766" g_stop="68936" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="202" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70537" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="473" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E327026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68766" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATG</genome_strand>
        <mrna_strand>GACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339929" ref_strand="+" ref_description="SGN-E339929 [cTOF-3-D4]">
      <seq>acaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattntgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68467" stop="71271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68767" g_stop="68936" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="201" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="489" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="675" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70972" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="694" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E339929" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68767" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAA</genome_strand>
        <mrna_strand>ACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTNTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334958" ref_strand="+" ref_description="SGN-E334958 [cTOE-9-K14]">
      <seq>acaaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattntgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68467" stop="71270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68767" g_stop="68936" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="201" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="489" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="675" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70970" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="692" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E334958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68767" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGC</genome_strand>
        <mrna_strand>ACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTNTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313965" ref_strand="+" ref_description="SGN-E313965 [cTOA-19-E18]">
      <seq>gcaaaaatggcaaagtattggcatttttgtaattgtttcagctcttggggttcttgcggtgtgtggtgtggttgctgaggacaacgaatatgtgttcactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatatagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaagaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccaaacccctccggagagaaattcgagaactatttaacgctagctgaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="71016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68767" g_stop="68936" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="202" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="490" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70716" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="554" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E313965" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68767" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAATGGCAAAG-AGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAAC</genome_strand>
        <mrna_strand>GCAAAAATGGCAAAGTATTGGCATTTTTGTAATTGTTTCAGCTCTTGGGGTTCTTGCGGTGTGTGGTGTGGTTGCTGAGGACAACGAATATGTGTTCACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATATAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAAGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAAACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548943" ref_strand="+" ref_description="SGN-E548943 [TUS-65-N16]">
      <seq>caaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctggttgtactatttttgacaatgacccaaagcaccatcctttatgtaaacagttctttcgaggcaccaaacgccaggcattgctatttgtgaactttagctctgaagttgatgcttttaagtcaagntacacgatgttgctgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="71645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="488" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="674" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="800" r_length="126" r_score="0.873"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.73"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71345" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="871" r_length="71" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E548943" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCC-TTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATT</genome_strand>
        <mrna_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGGTTGTACTATTTTTGACAATGACCCAAAGCACCATCCTTTATGTAAAC-AGTTCTTTCGAGGCACCAAACGCCAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAAGTTGATGCTTTTAAGTCAAGNTAC-ACGATGTTGCTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693103" ref_strand="+" ref_description="SGN-E693103 [LH_Ea10H05]">
      <seq>caattatggcaaagagtggcattttggtaattgtttcagctctcgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatcgagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctctggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcagggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="71347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="488" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="674" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71047" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="768" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E693103" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATG</genome_strand>
        <mrna_strand>CAATTATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTCGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATCGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCTGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCAGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589210" ref_strand="+" ref_description="SGN-E589210 [42780]">
      <seq>caaatatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaagtgatgaagccaatagagagctttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacgcctccggcgagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacgtgcccactcttcgtcttctaaagccatttgatgaactctttgttgattctgaggactttgaagtcgatgcaatggagaagttcatttcagaatctagtattcctattgttactatttttgacaatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="71329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="488" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="674" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71029" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="750" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E589210" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACC</genome_strand>
        <mrna_strand>CAAATATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAGCTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACGCCTCCGGCGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACGTGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTCTGAG...................................................................................................................GACTTTGAAGTCGATGCAATGGAGAAGTTCATTTCAGAATCTAGTATTCCTATTGTTACTATTTTTGACAATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543839" ref_strand="+" ref_description="SGN-E543839 [TUS-65-N20]">
      <seq>caaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="488" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70834" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="670" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E543839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486840" ref_strand="+" ref_description="SGN-E486840 [cSTE-23-K22]">
      <seq>caaatatggcaaagagtggcgttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="70851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70551" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="485" r_length="285" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E486840" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</genome_strand>
        <mrna_strand>CAAATATGGCAAAGAGTGGCGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455654" ref_strand="+" ref_description="SGN-E455654 [cSTS-26-N6]">
      <seq>caaatatggcaaagagtggtgttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcaccgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgcaagaatcttgctcctgagtatgaaaaaactgcctcacagctgantaatcatgaccctccaatcgatctagctaagtatgatgcaagtgatcaacccaatagacaactttcaaaacagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="70669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70369" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="303" r_length="103" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E455654" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACG</genome_strand>
        <mrna_strand>CAAATATGGCAAAGAGTGGTGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACCGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGCAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAACTGCCTCACAGCTGANTAATCATGACCCTCCAATCGATCTAGCTAAGTATGATGCAAGTGATCAACCCAATAGACAACTTTCAAAACAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316989" ref_strand="+" ref_description="SGN-E316989 [cTOA-27-P14]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaattcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgntaacaagttcttcgaaggcaccaacgccaaggcattgctattttgtgaactttagctctgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="673" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="798" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71306" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="832" r_length="34" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E316989" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTA-TTTGTGAACTTTAGCTCTGAATTT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAA-TTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGNTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTTGTGAACTTTAGCTCTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321595" ref_strand="+" ref_description="SGN-E321595 [cTOB-25-I10]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="673" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70975" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="695" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E321595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGG</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324215" ref_strand="+" ref_description="SGN-E324215 [cTOC-4-P6]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="673" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70969" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="689" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATG</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324863" ref_strand="+" ref_description="SGN-E324863 [cTOC-11-D19]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgantttgctcacactgttgatgctaaacacctccctcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70772" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="607" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGANTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262749" ref_strand="+" ref_description="SGN-E262749 [cLEG-63-J15]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttggtggtatatttccagacccctccggagagaaattcgagaactagtttacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70767" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="602" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E262749" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GGTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTAGTTTACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324214" ref_strand="+" ref_description="SGN-E324214 [cTOC-4-P4]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaagaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70761" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="596" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324214" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAAGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251945" ref_strand="+" ref_description="SGN-E251945 [cLEG-14-H15]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70761" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="596" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E251945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311273" ref_strand="+" ref_description="SGN-E311273 [cLEZ-16-D12]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70759" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="594" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E311273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACA</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306480" ref_strand="+" ref_description="SGN-E306480 [cLEX-13-O5]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70753" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="588" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E306480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251470" ref_strand="+" ref_description="SGN-E251470 [cLEG-9-N7]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctcccgagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="586" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E251470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGAT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCCGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316387" ref_strand="+" ref_description="SGN-E316387 [cTOA-25-B5]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70718" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="553" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E316387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTG</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325784" ref_strand="+" ref_description="SGN-E325784 [cTOC-12-M15]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70717" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="552" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E325784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313555" ref_strand="+" ref_description="SGN-E313555 [cTOA-12-O24]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaagaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="539" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E313555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAAGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272630" ref_strand="+" ref_description="SGN-E272630 [cLEM-21-D12]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="71004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="539" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E272630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202399" ref_strand="+" ref_description="SGN-E202399 [cLEC-6-N20]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="487" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70662" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="497" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E202399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATAT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310497" ref_strand="+" ref_description="SGN-E310497 [cTOA-9-I5]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccacggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactattacgggcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgcttaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70552" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="485" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E310497" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTG</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCACGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATTACGGGCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTTAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313518" ref_strand="+" ref_description="SGN-E313518 [cTOA-12-A6]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaagaagatgccacaaaccttattgatgagaaaagtatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70551" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="484" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E313518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAAGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336624" ref_strand="+" ref_description="SGN-E336624 [cTOE-4-F7]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacanaccttattgatgagaaaagtatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70551" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="484" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E336624" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACANACCTTATTGATGAGAAAAGTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287922" ref_strand="+" ref_description="SGN-E287922 [cLES-19-P9]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70549" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="482" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E287922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311877" ref_strand="+" ref_description="SGN-E311877 [cTOA-15-L20]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70549" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="482" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E311877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283708" ref_strand="+" ref_description="SGN-E283708 [cLES-1-C23]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70503" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="436" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E283708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATC</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330586" ref_strand="+" ref_description="SGN-E330586 [cTOD-8-O2]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactttaacggtcctcgtggaagcagatggtattgtatcctacttggaagaaacaagtgggtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70489" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="424" r_length="225" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E330586" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGT-GAAGCAGCTGGTATTGTATCCTACTT-GAAGAAACAAGTGGGTCCTG</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTTTAACGGTCCTCGTGGAAGCAGATGGTATTGTATCCTACTTGGAAGAAACAAGTGGGTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300787" ref_strand="+" ref_description="SGN-E300787 [cLEW-8-M19]">
      <seq>aaaaatggctaatagtggcattttggtaattgcttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagttgtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccacggtttcccaactattaagatattgcgagatggaggaaagaaagctcaagactataacgggcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70485" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="418" r_length="219" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E300787" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGT</genome_strand>
        <mrna_strand>AAAAATGGCTAATAGTGGCATTTTGGTAATTGCTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTTGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCACGGTTTCCCAACTATTAAGATATTGCGAGATGGAGGAAAGAAAGCTCAAGACTATAACGGGCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299009" ref_strand="+" ref_description="SGN-E299009 [cLET-42-J23]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70373" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="306" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E299009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGAT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300128" ref_strand="+" ref_description="SGN-E300128 [cLEW-11-J3]">
      <seq>aaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68469" stop="70673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68769" g_stop="68936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="199" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70373" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="306" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E300128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68769" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGAT</genome_strand>
        <mrna_strand>AAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333628" ref_strand="+" ref_description="SGN-E333628 [cTOD-22-J9]">
      <seq>aaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtgggacagtcaacaagcccactcttcgtcttctaaagccatttgatgaaactcttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68470" stop="71288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68770" g_stop="68936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="198" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="486" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="672" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70988" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="707" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E333628" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68770" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTC</genome_strand>
        <mrna_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGGACAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAAACTCTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333815" ref_strand="+" ref_description="SGN-E333815 [cTOD-22-J8]">
      <seq>aaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaagccatttgatgaactctttgttgattttgaggactttgatgtcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68470" stop="71269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68770" g_stop="68936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="198" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="486" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="671" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70969" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="687" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E333815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68770" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATG</genome_strand>
        <mrna_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCT-AAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207905" ref_strand="+" ref_description="SGN-E207905 [cLEC-34-K8]">
      <seq>aaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68470" stop="71053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68770" g_stop="68936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="198" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="486" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70753" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="587" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E207905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68770" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGC</genome_strand>
        <mrna_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324073" ref_strand="+" ref_description="SGN-E324073 [cTOC-3-E16]">
      <seq>aaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68470" stop="71012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68770" g_stop="68936" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="198" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="486" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="546" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68770" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAA</genome_strand>
        <mrna_strand>AAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315306" ref_strand="+" ref_description="SGN-E315306 [cTOA-24-F9]">
      <seq>aaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctagagccatttgatgaactctttgttgattctgaggactttgatgtcgatgcaatggagaagtcatctcagaatctagtattcctggtgttactatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68471" stop="71320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68771" g_stop="68936" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="197" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="485" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="671" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71020" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="737" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E315306" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68771" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTG</genome_strand>
        <mrna_strand>AAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAGAGCCATTTGATGAACTCTTTGTTGATTCTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAG-TCATCTCAGAATCTAGTATTCCTGGTGTTACTATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324437" ref_strand="+" ref_description="SGN-E324437 [cTOC-6-I13]">
      <seq>aaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68471" stop="70802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68771" g_stop="68936" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="197" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70502" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="433" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68771" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAAT</genome_strand>
        <mrna_strand>AAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320524" ref_strand="+" ref_description="SGN-E320524 [cTOB-22-M7]">
      <seq>atggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68473" stop="71051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68773" g_stop="68936" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="195" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="483" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="582" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E320524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68773" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGAT</genome_strand>
        <mrna_strand>ATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441508" ref_strand="+" ref_description="SGN-E441508 [cSTA-30-N23]">
      <seq>tcggcacgaggggcgttttggtaattgtttcacctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatagtaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68475" stop="70808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68774" g_stop="68936" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="194" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70508" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="436" r_length="242" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E441508" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68774" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTC</genome_strand>
        <mrna_strand>TCGGCACGAGGGGCGTTTTGGTAATTGTTTCACCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATAGTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320971" ref_strand="+" ref_description="SGN-E320971 [cTOB-13-M20]">
      <seq>ggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68475" stop="71067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68775" g_stop="68936" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="193" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="481" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70767" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="596" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E320971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68775" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTC</genome_strand>
        <mrna_strand>GGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590040" ref_strand="+" ref_description="SGN-E590040 [43628]">
      <seq>caaagagtggcgttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgaagtcgatgcaatggagaagttcatttcagaatctagtattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68477" stop="71304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68777" g_stop="68936" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="191" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="479" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="665" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71004" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="716" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E590040" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68777" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCT</genome_strand>
        <mrna_strand>CAAAGAGTGGCGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGAAGTCGATGCAATGGAGAAGTTCATTTCAGAATCTAGTATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209751" ref_strand="+" ref_description="SGN-E209751 [cLEC-52-K24]">
      <seq>caaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68477" stop="71067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68777" g_stop="68936" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="191" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="479" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70767" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="594" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E209751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68777" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTC</genome_strand>
        <mrna_strand>CAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267462" ref_strand="+" ref_description="SGN-E267462 [cLEI-8-J11]">
      <seq>aaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68478" stop="70860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68778" g_stop="68936" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="190" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="478" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70665" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="491" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E267462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68778" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTC</genome_strand>
        <mrna_strand>AAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319413" ref_strand="+" ref_description="SGN-E319413 [cTOB-15-F23]">
      <seq>aaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68478" stop="70860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68778" g_stop="68936" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="190" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="478" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70662" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="488" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E319413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68778" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATAT</genome_strand>
        <mrna_strand>AAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205230" ref_strand="+" ref_description="SGN-E205230 [cLEC-16-N20]">
      <seq>aagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68479" stop="70803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68779" g_stop="68936" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="189" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70503" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="426" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E205230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68779" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATC</genome_strand>
        <mrna_strand>AAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281719" ref_strand="+" ref_description="SGN-E281719 [cLER-14-A9]">
      <seq>gagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagacattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68481" stop="70851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68781" g_stop="68936" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="187" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70551" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="472" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E281719" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68781" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</genome_strand>
        <mrna_strand>GAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGACATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312782" ref_strand="+" ref_description="SGN-E312782 [cTOA-8-F24]">
      <seq>tagtggcattaaggtaattgggggagctttgggtgttcttgcaggtcgcgcgtgttttcgctgaggagaacgaatatgtgtcgactttggaccattctaacctcactgagactgttgctaagcacaactttattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagatctgagttgtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagttcgagatccatggtttcccaactattaagatattgagagatggatgaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68505" stop="70718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68781" g_stop="68936" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="188" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70418" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="340" r_length="152" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E312782" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68781" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTG-GTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAA</genome_strand>
        <mrna_strand>TAGTGGCATTAAGGTAATTGGGGGAGCTTTGGGTGTTCTTGCAGGTCGCGCGTGTTTTCGCTGAGGAGAACGAATATGTGTCGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTTATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGATCTGAGTTGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTTCGAGATCCATGGTTTCCCAACTATTAAGATATTGAGAGATGGATGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458003" ref_strand="+" ref_description="SGN-E458003 [cPRO-4-I20]">
      <seq>gtggtgttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcaccgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacagaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggacccagtcacaagcccactcttcgtcttctaaagcatttgatgaactctttgntgattttgaggactttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68483" stop="71148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68783" g_stop="68936" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="185" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="473" r_length="288" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="658" r_length="185" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="70964" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="669" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E458003" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68783" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGA-CCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGT</genome_strand>
        <mrna_strand>GTGGTGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACCGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAGACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCCAGTC-ACAAGCCCACTCTTCGTCTTCTAAAG-CATTTGATGAACTCTTTGNTGATTTTGAG...................................................................................................................GACTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264187" ref_strand="+" ref_description="SGN-E264187 [cLEG-64-J14]">
      <seq>ggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaancagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgaggcaatggagaagttcatctcagaatctagtattcctgttggtactatttttgacaatgacccaacaaccatccttatgttacaagttcttcgaaggcaccaacgccaagcattgctatttgtgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68485" stop="71594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68785" g_stop="68936" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="183" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="471" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="657" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="780" r_length="123" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71294" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="801" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E264187" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68785" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTT</genome_strand>
        <mrna_strand>GGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAANCAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGAGGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGGTACTATTTTTGACAATGACCC-AACAACCATCCTTATGTT-ACAAGTTCTTCGAAGGCACCAACGCCAA-..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262345" ref_strand="+" ref_description="SGN-E262345 [cLEG-56-J18]">
      <seq>ggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctggtgttactatttttgacaatgacccaaacaaccatccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68485" stop="71346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68785" g_stop="68936" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="183" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="471" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="657" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71046" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="750" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E262345" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68785" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTAT</genome_strand>
        <mrna_strand>GGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGGTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324253" ref_strand="+" ref_description="SGN-E324253 [cTOC-4-E20]">
      <seq>ggcattttggtaattgtttcagcgtcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctntgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68485" stop="71010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68785" g_stop="68936" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="184" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="472" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70710" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="530" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324253" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68785" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTTGGTAATTGTTTCAGC-TCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTG</genome_strand>
        <mrna_strand>GGCATTTTGGTAATTGTTTCAGCGTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTNTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312303" ref_strand="+" ref_description="SGN-E312303 [cTOA-5-P16]">
      <seq>gcattttggtaattgtttcagctcttggggttcttgcggtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68486" stop="70726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68786" g_stop="68936" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="182" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70426" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="342" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E312303" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68786" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAG</genome_strand>
        <mrna_strand>GCATTTTGGTAATTGTTTCAGCTCTTGGGGTTCTTGCGGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307779" ref_strand="+" ref_description="SGN-E307779 [cLEY-16-H22]">
      <seq>ttttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgaaagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68489" stop="71053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68789" g_stop="68936" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="179" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="467" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70753" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="568" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E307779" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68789" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGC</genome_strand>
        <mrna_strand>TTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAAAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487517" ref_strand="+" ref_description="SGN-E487517 [cSTE-25-F12]">
      <seq>tttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctccgagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagccggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgaagtcgatgcaatggagaagttcatttcagaatctagtattcctattggtactatttttgacaatgacccaaacaaccatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68490" stop="71344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68790" g_stop="68936" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="178" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="466" r_length="288" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="652" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71044" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="743" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E487517" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68790" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTT</genome_strand>
        <mrna_strand>TTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCCGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCCGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGAAGTCGATGCAATGGAGAAGTTCATTTCAGAATCTAGTATTCCTATTGGTACTATTTTTGACAATGACCCAAACAACCATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259349" ref_strand="+" ref_description="SGN-E259349 [cLEG-43-E16]">
      <seq>tggtaataggatcagctcttgttgttcttgcagttcgtggtgtgtttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68492" stop="71093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68792" g_stop="68936" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="176" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="464" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70793" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="605" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E259349" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68792" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACT</genome_strand>
        <mrna_strand>TGGTAATAGGATCAGCTCTTGTTGTTCTTGCAGTTCGTGGTGTGTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264660" ref_strand="+" ref_description="SGN-E264660 [cLEG-72-D14]">
      <seq>tggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68492" stop="70772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68792" g_stop="68936" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="176" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70472" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="382" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E264660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68792" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAA</genome_strand>
        <mrna_strand>TGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451318" ref_strand="+" ref_description="SGN-E451318 [cSTS-12-K2]">
      <seq>aattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcaccgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacagaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctcccttcgggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68496" stop="71122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68796" g_stop="68936" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="172" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="460" r_length="288" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70822" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="630" r_length="170" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E451318" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68796" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACT</genome_strand>
        <mrna_strand>AATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACCGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAGACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTTCGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483745" ref_strand="+" ref_description="SGN-E483745 [cSTE-10-B20]">
      <seq>gtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctccgagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagccggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgaagtcgatgcatgggagaagttcatttcagaatctagtattcctattgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68500" stop="71313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68800" g_stop="68936" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="168" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="456" r_length="288" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="642" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71013" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="702" r_length="60" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E483745" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68800" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACT</genome_strand>
        <mrna_strand>GTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCCGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCCGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGAAGTCGATGCATGGGAGAAGTTCATTTCAGAATCTAGTATTCCTATTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329306" ref_strand="+" ref_description="SGN-E329306 [cTOD-2-I8]">
      <seq>gtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68500" stop="71045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68800" g_stop="68936" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="168" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="456" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70745" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="549" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E329306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68800" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACT</genome_strand>
        <mrna_strand>GTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486876" ref_strand="+" ref_description="SGN-E486876 [cSTE-23-D13]">
      <seq>gttgttcttgcagtttgtggtgtttttgctgaggagaaggaatatgtgttgactttggaccatactaacctcactgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcacagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaatccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtccaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagaccccgtcggagagaaattcgagaactatttaacactagctgacaaactgctaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtgaaccagtcaacaaacccactcttcgtcttctaaagccatgtgatgaactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68512" stop="71125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68812" g_stop="68936" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="156" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="444" r_length="288" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70825" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="617" r_length="173" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E486876" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68812" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTT</genome_strand>
        <mrna_strand>GTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAAGGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCACAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAATCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCCAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCGTCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGACAAACTGCTAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGAACCAGTCAACAAACCCACTCTTCGTCTTCTAAAGCCATGTGATGAACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469556" ref_strand="+" ref_description="SGN-E469556 [cSTB-12-B3]">
      <seq>cttgcagtttgtggtgtttttgctgaagagaaagaatatgtgttgactttggaccatactaacctcaccgagactgttgctaagcacaacttcattgttcttgaattctatgcaccttggtgtggacactgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68518" stop="70730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68818" g_stop="68936" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="150" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70430" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="314" r_length="164" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E469556" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68818" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTA</genome_strand>
        <mrna_strand>CTTGCAGTTTGTGGTGTTTTTGCTGAAGAGAAAGAATATGTGTTGACTTTGGACCATACTAACCTCACCGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703937" ref_strand="+" ref_description="SGN-E703937 [FA22DF02]">
      <seq>gtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgaccccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68533" stop="71648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68833" g_stop="68936" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="135" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="423" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="609" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="736" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71348" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="811" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E703937" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68833" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGA-CCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTAC</genome_strand>
        <mrna_strand>GTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704362" ref_strand="+" ref_description="SGN-E704362 [FA24AD01]">
      <seq>cgatcgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaaacagcacctgtgatcatcataatggacgctgatgaacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68547" stop="71866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68846" g_stop="68936" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="122" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="410" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="596" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="722" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="857" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71504" g_stop="71566" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="920" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E704362" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68846" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAG</genome_strand>
        <mrna_strand>CGATCGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAAACAGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257100" ref_strand="+" ref_description="SGN-E257100 [cLEG-44-F12]">
      <seq>aatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaaaatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaaacagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68552" stop="70860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68852" g_stop="68936" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="116" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="404" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70663" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="415" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E257100" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68852" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATT</genome_strand>
        <mrna_strand>AATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAAATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAACAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325504" ref_strand="+" ref_description="SGN-E325504 [cTOC-1-P6]">
      <seq>tgttgacttggaccattctaacctcactgagactgtgctacacaacttattgttgtgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68558" stop="70728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68858" g_stop="68936" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="104" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70428" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="266" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E325504" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68858" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGAC</genome_strand>
        <mrna_strand>TGTTGAC-TTGGACCATTCTAACCTCACTGAGACTG-TGCT-A-CACAACTT-ATTGTTG-TGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483870" ref_strand="+" ref_description="SGN-E483870 [cSTE-11-O19]">
      <seq>gttgctaagcaccaaccttcattgttcttgaattctatgcacccttggtgtggaccacctgtaagaatcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaatcgttctagctaagtatgatgcaagtgatgaagccaatagaagaactttcaaaacagtacgagaatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagccccactcttcgtcttctaaagccatttgatgaactctttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68593" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68893" g_stop="68936" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.841"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="80" r_length="33" r_score="0.839"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="370" r_length="290" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70834" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="553" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E483870" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68893" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTAAGCA-CAA-CTTCATTGTTGTTGAATTCTATGCA-CCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGA-CA-CTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAG-AGAACTTTCAAAACAGTACGAG-ATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAG-CCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>GTTGCTAAGCACCAACCTTCATTGTTCTTGAATTCTATGCACCCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACCACCTGTAAGAATCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATAGAAGAACTTTCAAAACAGTACGAGAATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483592" ref_strand="+" ref_description="SGN-E483592 [cSTE-10-G21]">
      <seq>cttcatttgttcttgaattctctgcacccttggtgtggacacctgtaagaatcttgctcctgaagtatgaaaaagctgcctccgaagctgagtagtcatgaaccctccaattgttctagctaagtatgaatgcaagtgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagccggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69965" stop="71121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="65" r_length="33" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="356" r_length="291" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70653" g_stop="70821" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="525" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E483592" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGACA-CTGTAAGAGTCTTGCTCCTG-AGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAG-AGCTGAGTAGTCATG-ACCCTCCAATTGTTCTAGCTAAGTATG-ATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAAC</genome_strand>
        <mrna_strand>GTGTGGACACCTGTAAGAATCTTGCTCCTGAAG...........................................................................................................................TATGAAAAAGCTGCCTCCGAAGCTGAGTAGTCATGAACCCTCCAATTGTTCTAGCTAAGTATGAATGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCCGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321129" ref_strand="+" ref_description="SGN-E321129 [cTOB-13-K12]">
      <seq>gacactgtaagagtcttgctcctgagtgtgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatcgagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatgctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgcctcacaccttattgatgagaaaagtatgtttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattgtgctcacactgttgatgctaaacacctccctcggggtggaccagtcagcaagcccactcttcgtcttctaaagccatgtgatgaactctttgttgattttgaggactttgatgtcgatgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69818" stop="71275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70118" g_stop="70143" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="314" r_length="288" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="500" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70954" g_stop="70975" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="522" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E321129" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70118" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGG</genome_strand>
        <mrna_strand>GACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TGTGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATCGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATGCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCTCACACCTTATTGATGAGAAAAGTATGTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTGTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAGCAAGCCCACTCTTCGTCTTCTAAAGCCATGTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214854" ref_strand="+" ref_description="SGN-E214854 [cLEC-78-M15]">
      <seq>aagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgcccaggcattgctatttgtgaactttagctctgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69826" stop="71605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70126" g_stop="70143" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="306" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="492" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="618" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71274" g_stop="71305" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="650" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E214854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70126" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATT</genome_strand>
        <mrna_strand>AAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCCAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259308" ref_strand="+" ref_description="SGN-E259308 [cLEG-43-G3]">
      <seq>ttaatgttaaattatgtttctttccagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69940" stop="71361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70240" g_stop="70554" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="501" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71061" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="609" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E259308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70240" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTC</genome_strand>
        <mrna_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253683" ref_strand="+" ref_description="SGN-E253683 [cLEG-32-J5]">
      <seq>ttaatgttaaattatgtttctttccagtatgaataatctgcctaagagctgagtagtcatgaccctacaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttgaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtgctgcatctgctgaaatcaagtcgaaggaagatgccacagaccttattgatgagaaaagtatcgaagttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaataactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctgagatgattttgaggactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69940" stop="71143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70240" g_stop="70554" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="501" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="70962" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="510" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E253683" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70240" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="70962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGAT</genome_strand>
        <mrna_strand>TTAATGTTAAATTATGTTTCTTTCCAGTATGAATAATCTGCCTAAGAGCTGAGTAGTCATGACCCTACAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTGAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTGCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAGACCTTATTGATGAGAAAAGTATCGAAGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAATAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTGAGATGATTTTGAG...................................................................................................................GACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257121" ref_strand="+" ref_description="SGN-E257121 [cLEG-46-A21]">
      <seq>atgttaaattatgtttctttccagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaaagtccaagtacacgatgttgctgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69943" stop="71645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70243" g_stop="70554" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="498" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="624" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71345" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="696" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E257121" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70243" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTT-AAGTCCAAGTACAACGATGTTGCTGTGATT</genome_strand>
        <mrna_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAAGTCCAAGTAC-ACGATGTTGCTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263442" ref_strand="+" ref_description="SGN-E263442 [cLEG-69-H14]">
      <seq>atgttaaattatgtttctttccagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcntgaagcanctggtattgtatcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69943" stop="70768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70243" g_stop="70468" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E263442" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70243" e_stop="70468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACT</genome_strand>
        <mrna_strand>ATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCNTGAAGCANCTGGTATTGTATCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294729" ref_strand="-" ref_description="SGN-E294729 [cLET-17-I15](-)">
      <seq>aaaaagctgtctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcggaggaagatgccacaaaccttattgatgagaaaagcatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgccttctaaagccatttgatgaactctttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69971" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70271" g_stop="70554" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70834" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E294729" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294729" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70271" e_stop="70554"/>
          <exon e_start="70653" e_stop="70834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>AAAAAGCTGTCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGGAGGAAGATGCCACAAACCTTATTGATGAGAAAAGCATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGCCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294728" ref_strand="+" ref_description="SGN-E294728 [cLET-17-I15]">
      <seq>aaaaagctgtctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcggaggaagatgccacaaaccttattgatgagaaaagcatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgccttctaaagccatttgatgaactctttgttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69971" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70271" g_stop="70554" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70834" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="466" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E294728" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70271" e_stop="70554"/>
          <exon e_start="70653" e_stop="70834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</genome_strand>
        <mrna_strand>AAAAAGCTGTCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGGAGGAAGATGCCACAAACCTTATTGATGAGAAAAGCATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGCCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311885" ref_strand="+" ref_description="SGN-E311885 [cTOA-15-P6]">
      <seq>aaaaagctgcctcagagctgagtaggcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattatgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69971" stop="71132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70271" g_stop="70554" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70832" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="464" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E311885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70271" e_stop="70554"/>
          <exon e_start="70653" e_stop="70832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGAT</genome_strand>
        <mrna_strand>AAAAAGCTGCCTCAGAGCTGAGTAGGCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTATGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573724" ref_strand="+" ref_description="SGN-E573724 [33079]">
      <seq>ctgagtagtcatgaccctccaattgttctagctaagtatgatgcaagtgatgaagccaataagagctttcaaaaacagtacgagatccagggtttcccaactattaagatcttgcgggatggaggaaagaaagttcaagaatataacggtcctcgtgaagcagctggtattgtatcctatttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69988" stop="70818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70288" g_stop="70518" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E573724" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70288" e_stop="70518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTC-AAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGAT</genome_strand>
        <mrna_strand>CTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAGTGATGAAGCCAATA-AGAGCTTTCAAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAAAGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317628" ref_strand="+" ref_description="SGN-E317628 [cTOB-8-I20]">
      <seq>aatagagatctttcaaaacagtacgagatccaaggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactattacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacatgtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttatggatgagaaaagtatcttcggtgttggtatagttccagacccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70045" stop="70860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70345" g_stop="70554" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70676" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="234" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E317628" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70345" e_stop="70554"/>
          <exon e_start="70653" e_stop="70676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCC</genome_strand>
        <mrna_strand>AATAGAGATCTTTCAAAACAGTACGAGATCCAAGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATTACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACATGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATGGATGAGAAAAGTATCTTCGGT..................................................................................................GTTGGTATAGTTCCAGACCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335066" ref_strand="+" ref_description="SGN-E335066 [cTOE-9-F12]">
      <seq>aactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttcaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70052" stop="71910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70352" g_stop="70554" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="389" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="515" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="649" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71610" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="756" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E335066" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70352" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTT</genome_strand>
        <mrna_strand>AACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTT-CAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701835" ref_strand="+" ref_description="SGN-E701835 [FA17AC10]">
      <seq>caactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaagtggttgttagggatcccctccangatatggtttacaaatcggggaaaaatgtgctgttagagttctatgcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70085" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70385" g_stop="70554" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="356" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="482" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="617" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="737" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="855" r_length="118" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E701835" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70385" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>CAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAAGTGGTTGTTAGGGATCCCCTCCANGATATGGTTTACAAATCGGGGAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324735" ref_strand="+" ref_description="SGN-E324735 [cTOC-8-H4]">
      <seq>aactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaagggatggggtgagctttctcttgggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70086" stop="71682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70386" g_stop="70554" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="355" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="481" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71382" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="590" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324735" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70386" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATG</genome_strand>
        <mrna_strand>AACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAAGGGATGGGGTGAGCTTTCTCTTGGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253799" ref_strand="+" ref_description="SGN-E253799 [cLEG-28-C12]">
      <seq>aaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70117" stop="71894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70417" g_stop="70554" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="324" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="450" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="585" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71594" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="676" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E253799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70417" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATG</genome_strand>
        <mrna_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306540" ref_strand="+" ref_description="SGN-E306540 [cLEX-13-L17]">
      <seq>aaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaagtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70117" stop="71858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70417" g_stop="70554" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="324" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="450" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="585" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71558" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="640" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E306540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70417" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATG</genome_strand>
        <mrna_strand>AAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAAGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211099" ref_strand="+" ref_description="SGN-E211099 [cLEC-69-N17]">
      <seq>tcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70122" stop="71910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70422" g_stop="70554" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="319" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="445" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="580" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71611" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="688" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E211099" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70422" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</genome_strand>
        <mrna_strand>TCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591709" ref_strand="+" ref_description="SGN-E591709 [45427]">
      <seq>aaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacgcctccggcgagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacgtgcccactcttcgtcttctaaagccatttgatgaactctttgttgattctgaggactttgaagtcgatgcaatggagaagttcatttcagaatctagtattcctattgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttctttgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgattttgatgcttttaagtccaagtacaacgatgttgctgtgctttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccagaacaggcacctgtgatcatcataatggacactgaggaacagaagtatgttaaggaccatgtggaacctgatgccgttgctgcttatttgaaggattacaaggatggaaaactgaagccacatgtgaagtcacagcccatccctgaagtgaacgacgaaactgttaaggtggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70174" stop="72121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70474" g_stop="70554" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="267" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="393" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="528" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="648" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71749" g_stop="71821" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="721" r_length="73" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E591709" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70474" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTG</genome_strand>
        <mrna_strand>AAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACGCCTCCGGCGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACGTGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTCTGAG...................................................................................................................GACTTTGAAGTCGATGCAATGGAGAAGTTCATTTCAGAATCTAGTATTCCTATTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTTGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGATTTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGCTTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCAGAACAGGCACCTGTGATCATCATAATGGACACTGAGGAACAGAAGTATGTTAAGGACCATGTGGAACCTGATGCCGTTGCTGCTTATTTGAAGGATTACAAG.............................................................................................................................GATGGAAAACTGAAGCCACATGTGAAGTCACAGCCCATCCCTGAAGTGAACGACGAAACTGTTAAGGTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323281" ref_strand="+" ref_description="SGN-E323281 [cTOB-28-B6]">
      <seq>aagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaaagtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70178" stop="72101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70478" g_stop="70554" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="263" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="389" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="524" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="644" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71749" g_stop="71801" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="697" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E323281" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70478" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</genome_strand>
        <mrna_strand>AAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAAGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214809" ref_strand="+" ref_description="SGN-E214809 [cLEC-79-D6]">
      <seq>tctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcngactgaagccggaacaggcacctgtgatcatcataatggacgctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70192" stop="71859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70492" g_stop="70554" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="249" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="375" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="510" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71559" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="566" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E214809" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70492" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGA</genome_strand>
        <mrna_strand>TCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCNGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320450" ref_strand="+" ref_description="SGN-E320450 [cTOB-22-N23]">
      <seq>ctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactggtgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgagaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgcgaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacgaaggggatggggtgagctttctcttgagtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacacgcacctgtgatcatcataatggacgctgatgaacaaaagtatattaacgaccgtgtggagcctgatgccattgctgcttacttgaaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70196" stop="71918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70496" g_stop="70554" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="245" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="371" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="506" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71619" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="622" r_length="116" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E320450" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70496" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTA</genome_strand>
        <mrna_strand>CTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGGTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGAGAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCGAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACGAAGGGGATGGGGTGAGCTTTCTCTTGAGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACACGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAACGACCGTGTGGAGCCTGATGCCATTGCTGCTTACTTGAAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589596" ref_strand="+" ref_description="SGN-E589596 [43174]">
      <seq>atcaagtcgaaggaggatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacgcctccggcgagaaattcgagaactatttaacactagctgaaaaactgcgaggcgaggtcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacgtgcccactcttcgtcttctaaagccatttgatgaactctttgttgattctgaggactttgaagtcgatgcaatggagaagttcatttcagaatctagtattcctattgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttctttgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgattttgatgcttttaagtccaagtacaacgatgttgctgtgctttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccagaacaggcacctgtgatcatcataatggacactgaggaacagaagtatgttaaggaccatgtggaacctgatgccgttgctgcttatttgaaggattacaaggatggaaaactgaagccacatgtgaagtcacagcccatccctgaagtgaacgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaactcggcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70201" stop="72163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70501" g_stop="70554" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="240" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="366" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="501" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="621" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71749" g_stop="71863" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="736" r_length="115" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E589596" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70501" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAA</genome_strand>
        <mrna_strand>ATCAAGTCGAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACGCCTCCGGCGAGAAATTCGAGAACTATTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACGTGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTCTGAG...................................................................................................................GACTTTGAAGTCGATGCAATGGAGAAGTTCATTTCAGAATCTAGTATTCCTATTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTTGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGATTTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGCTTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCAGAACAGGCACCTGTGATCATCATAATGGACACTGAGGAACAGAAGTATGTTAAGGACCATGTGGAACCTGATGCCGTTGCTGCTTATTTGAAGGATTACAAG.............................................................................................................................GATGGAAAACTGAAGCCACATGTGAAGTCACAGCCCATCCCTGAAGTGAACGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAACTCGGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710420" ref_strand="+" ref_description="SGN-E710420 [FA55BE04]">
      <seq>gtcttaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtccatgaccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70210" stop="72105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70506" g_stop="70554" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="236" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="362" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="497" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="617" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71749" g_stop="71801" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="670" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E710420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70506" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTC-GAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</genome_strand>
        <mrna_strand>GTCTTAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316738" ref_strand="+" ref_description="SGN-E316738 [cTOB-5-H16]">
      <seq>acaaaccttattgatgagaaaagtatctttgttggtggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgacgctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70222" stop="71903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70522" g_stop="70554" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="219" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="345" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="480" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71603" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="580" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E316738" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70522" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTG</genome_strand>
        <mrna_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GGTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGACGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316587" ref_strand="+" ref_description="SGN-E316587 [cTOA-25-F4]">
      <seq>acaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70222" stop="71856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70522" g_stop="70554" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="219" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="345" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="480" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71556" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="533" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E316587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70522" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGA</genome_strand>
        <mrna_strand>ACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200816" ref_strand="+" ref_description="SGN-E200816 [cLEC-9-L19]">
      <seq>tgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70233" stop="71617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70533" g_stop="70554" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="208" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="334" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71317" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="378" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E200816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70533" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAA</genome_strand>
        <mrna_strand>TGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324653" ref_strand="+" ref_description="SGN-E324653 [cTOC-9-D19]">
      <seq>gaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtctatgcaatggagaagttcatctcataatctagtattcctgttgttactatttttgacaatgacccaaacaaccattcttatgttaacaagttcttcgaaagcaccaacgccaaagcattgctatttgtgaactttagctctgaatttgatgcttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70239" stop="71618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70539" g_stop="70554" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="202" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="328" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71318" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="373" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E324653" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70539" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAG</genome_strand>
        <mrna_strand>GAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCTATGCAATGGAGAAGTTCATCTCATAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATTCTTATGTTAACAAGTTCTTCGAAAGCACCAACGCCAAA..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204202" ref_strand="+" ref_description="SGN-E204202 [cLEC-13-K20]">
      <seq>gaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70239" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70539" g_stop="70554" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="202" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E204202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70539" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG</genome_strand>
        <mrna_strand>GAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261477" ref_strand="+" ref_description="SGN-E261477 [cLEG-57-A11]">
      <seq>tttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70353" stop="72110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70549" g_stop="70554" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="192" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="318" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="573" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71749" g_stop="71810" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="635" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E261477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70549" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGT</genome_strand>
        <mrna_strand>TTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253672" ref_strand="+" ref_description="SGN-E253672 [cLEG-32-F3]">
      <seq>tttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgctgttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70353" stop="71911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70549" g_stop="70554" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="192" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="318" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71504" g_stop="71611" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="561" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E253672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70549" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</genome_strand>
        <mrna_strand>TTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTGTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203808" ref_strand="+" ref_description="SGN-E203808 [cLEC-17-H6]">
      <seq>tatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70360" stop="71868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70660" g_stop="70838" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="305" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="440" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71568" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="505" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E203808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70660" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTA</genome_strand>
        <mrna_strand>TATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262546" ref_strand="+" ref_description="SGN-E262546 [cLEG-63-A22]">
      <seq>agacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggaaaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggaatggggtgagctttctcttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70367" stop="71678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70667" g_stop="70838" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="298" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71378" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="404" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E262546" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70667" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGG-ATGGGGTGAGCTTTCTCTTGGGT</genome_strand>
        <mrna_strand>AGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAAAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGAATGGGGTGAGCTTTCTCTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209252" ref_strand="+" ref_description="SGN-E209252 [cLEC-53-C16]">
      <seq>gaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaatgaccatgtggaacctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70382" stop="71894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70682" g_stop="70838" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="283" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="418" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71594" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="509" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E209252" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70682" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATG</genome_strand>
        <mrna_strand>GAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAATGACCATGTGGAACCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215005" ref_strand="+" ref_description="SGN-E215005 [cLEC-78-E3]">
      <seq>aattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70384" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70684" g_stop="70838" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="281" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="416" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="536" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="654" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E215005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70684" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>AATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323627" ref_strand="+" ref_description="SGN-E323627 [cTOC-2-L2]">
      <seq>tttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70397" stop="71911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70697" g_stop="70838" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="268" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="403" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71611" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E323627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70697" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</genome_strand>
        <mrna_strand>TTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213242" ref_strand="+" ref_description="SGN-E213242 [cLEC-72-J4]">
      <seq>tagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggttttacaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70405" stop="72156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70705" g_stop="70838" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="260" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="395" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="515" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71749" g_stop="71856" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="623" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E213242" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70705" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCG</genome_strand>
        <mrna_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTTACAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206447" ref_strand="+" ref_description="SGN-E206447 [cLEC-23-O7]">
      <seq>tagctgaaaaactgcgaggcgagttcgattttgctcacagtgctgatgctgaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattatgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatatgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaagattacaaggaaggaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70405" stop="71924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70705" g_stop="70838" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="260" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="395" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="515" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71749" g_stop="71760" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="527" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E206447" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70705" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTG</genome_strand>
        <mrna_strand>TAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACAGTGCTGATGCTGAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTATGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATATGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAAGATTACAAG.............................................................................................................................GAAGGAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256293" ref_strand="+" ref_description="SGN-E256293 [cLEG-37-N16]">
      <seq>cgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70497" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70797" g_stop="70838" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="168" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="303" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="423" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="541" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E256293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70797" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>CGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319042" ref_strand="+" ref_description="SGN-E319042 [cTOB-14-H1]">
      <seq>tgatgtcgatgcaatggagaagttcatctcagaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcaccttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70659" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70959" g_stop="71079" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="376" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="494" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E319042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70959" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>TGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269568" ref_strand="+" ref_description="SGN-E269568 [cLEM-2-E22]">
      <seq>tcgatgctatggagaagttcatctcagaatctagtattgctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70664" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70964" g_stop="71079" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="251" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="371" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="489" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E269568" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70964" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>TCGATGCTATGGAGAAGTTCATCTCAGAATCTAGTATTGCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310371" ref_strand="+" ref_description="SGN-E310371 [cTOA-1-O14]">
      <seq>aatggagaagttcatctcacaatctagtattcctgttgttactatttttgacaatgacccaaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70671" stop="72101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70971" g_stop="71079" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71749" g_stop="71801" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="417" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E310371" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70971" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</genome_strand>
        <mrna_strand>AATGGAGAAGTTCATCTCACAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287726" ref_strand="+" ref_description="SGN-E287726 [cLES-9-H4]">
      <seq>aaacaaccatccttatgttaacaagttcttcgaaggcaccaacgccaaggcattgctatttgtgaactttagctctgaatttgatgcttttaagtccaagtacaacgatgttgctgtgatttacaaaggggatggggtgagctttctcttgggtgatgttgaggctggtcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgctgttagagttctatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70731" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71031" g_stop="71079" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71274" g_stop="71408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="184" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="304" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="422" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E287726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71031" e_stop="71079"/>
          <exon e_start="71274" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>AAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247634" ref_strand="+" ref_description="SGN-E247634 [cLEF-42-L12]">
      <seq>tcaaggtgcttttgagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggaatgaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71198" stop="72170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71393" g_stop="71408" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71504" g_stop="71623" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="136" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71749" g_stop="71866" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="254" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E247634" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71393" e_stop="71408"/>
          <exon e_start="71504" e_stop="71623"/>
          <exon e_start="71749" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGTGCTTTTGAGGTTGGTTAAAATTTTCAACTATCTGATTACAGTGTCATTGTATCCATGATCACGTAAAAAGGCGCGTTGAACATTCGTTTTATTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</genome_strand>
        <mrna_strand>TCAAGGTGCTTTTGAG...............................................................................................TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG.............................................................................................................................GAATGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288667" ref_strand="+" ref_description="SGN-E288667 [cLES-8-J20]">
      <seq>ttggaattgcagtacttcggactgaagccggaacaggcacctgtgatcatcataatggacgctgatgaacaaaagtatattaaggaccatgtggaacctgatgccattgctgcttacttgaaggattacaaggtgatgcatcctcttctttttcttggatatattttggaatgaaagcgttgttaattgtgaacaatattctgcacggaaggaaaggcttactaacctttttcctctaattttccacattgttacaggaaggaaaactgaagccacatgtgaagtcagagcccatccctgaagtcaatgacgaacctgttaaggtggttgttagggataccctccaggatatggtttacaaatcgggaaaaaatggtgcgtgtctgtcaatattttaatctttattcgatgtcttggttaagaaagagtttgttctttgttgtaccatttcgttctccctctttggtgtttacttgcatttctttactagtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71192" stop="72286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71492" g_stop="71986" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E288667" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71492" e_stop="71986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGT</genome_strand>
        <mrna_strand>TTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTTGTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87740" stop="86761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87440" g_stop="87060" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87440" e_stop="87060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCATGGTAAGGTTTTTAAC</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88257" stop="86894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87957" g_stop="87194" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87957" e_stop="87194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87926" stop="86928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87626" g_stop="87228" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87626" e_stop="87228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88230" stop="87060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87930" g_stop="87360" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87930" e_stop="87360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88472" stop="87245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88172" g_stop="87545" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88172" e_stop="87545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88414" stop="87270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88122" g_stop="87570" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88122" e_stop="87570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGAT-CCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88512" stop="87275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88212" g_stop="87575" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88212" e_stop="87575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACAGTCGGGGTCTTAATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88472" stop="87297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88172" g_stop="87597" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88172" e_stop="87597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89088" stop="87778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88788" g_stop="88078" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88788" e_stop="88078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGTCTTCACTAGAAAAATGTGAAGTTTTTGGACCGATAATCCAAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTAACATTTATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGTAGTTCATGAAAAACTTGAAATGCGTCTAATCGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTAAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGCCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACAGTCGGGGTCTTAATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90948" stop="89799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90644" g_stop="90099" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90644" e_stop="90099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG---A-A-ATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGACCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90847" stop="89866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90534" g_stop="90166" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90534" e_stop="90166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92250" stop="90879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91942" g_stop="91179" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91942" e_stop="91179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACCGTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGTAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAACAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGTATGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719007" ref_strand="+" ref_description="SGN-E719007 [FC06BH12]">
      <seq>gacctaccaccaactcccaataatctcaaaatatctttgaaggaaaaaatatctaccccacaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcaaaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117095" stop="120770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117394" g_stop="117827" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="527" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="662" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120470" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="833" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E719007" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117394" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAT</genome_strand>
        <mrna_strand>GACCTACCACCAACTCCCAATAATCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCACAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615333" ref_strand="+" ref_description="SGN-E615333 [65130]">
      <seq>cttttaaggaagaaatatctagccccaaagatatctaactacattataacatttgtagcacatgatattacattgatgaaccccttcaactaacacaaataaataatattaccctttttttacttcaagatctttaacaagaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggcaacaagagagtattttgatgacattgcaccaaaaagacacactaaacctcaacgaagtgattattcttcaacttatgttgatcacatcaatctctatccttcttctcatgacacaattcccgaaaatcttgaattccaacgtctcgaaaatgatcctcagaaattggtttacaaaggcagccaagtgacagaggaatttattgaaacagagtattacaatgatcttaattgcatcgacaagcagcaccacacgacaggaacagggtttatcaaagtggagaataatgggaacactttcaatataggagatgattctgctattgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccaaacagaagtgataactgaaattgagtctttgataagggcagtagctgcttattttctatttctgtgaagcttggcttcaacttgtctctctttggtaaggtttcatttgaataacatggtatatgaattattcagacgatttttccctatctccctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117128" stop="120767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117428" g_stop="117827" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="492" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="627" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120468" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="795" r_length="168" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E615333" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117428" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTAC---AAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTA</genome_strand>
        <mrna_strand>CTTTTAAGGAAGAAATATCTAGCCCCAAAGATATCTAACTACATTATAACATTTGTAGCACATG--A-TATTACATTGATGAACCCCTTCAACTAACA-CAAATAAATAATATTACCCTTTTTTTACTTCAAGATCTTTAACAAGAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGCAACAAGAGAGTATTTTGATGACATTGCACCAAAAAGACACACTAAACCTCAACGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTATCCTTCTTCTCATGACACAATTCCCGAAAATCTTGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAAAGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAGTATTACAATGATCTTAATTGCATCGACAAGCAGCACCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGGTTTATCAAAGTGGAGAATAATGGGAACACTTTCAATATAGGAGATGATTCTGCTATTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCAAACAGAAGTGATAACTGAAATTGAGTCTTTGATAAGGGCAGTAGCTGCTTATTTTCTATTTCTGTGAAGCTTGGCTTCAACTTGTCTCTCTTTGGTAAGGTTTCATTTGAATAACATGGTATATGAATTA-TTCAGACGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286685" ref_strand="+" ref_description="SGN-E286685 [cLES-14-K11]">
      <seq>gaaaaaatatctaccccaaaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117136" stop="119399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117436" g_stop="117827" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119099" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="478" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E286685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117436" e_stop="117827"/>
          <exon e_start="119014" e_stop="119099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCA</genome_strand>
        <mrna_strand>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615620" ref_strand="+" ref_description="SGN-E615620 [65420]">
      <seq>ttgtagcacatgatattacattgatgaaccccttcaactaacacaaataaataatattaccctttttttacttcaagatctttaacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggcaacaagagagtattttgatgacattgcaccaaaaagacacactaaacctcaacgaagtgattattcttcaacttatgttgatcacatcaatctctatccttcttctcatgacacaattcccgaaaatcttgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagagtattacaaagatcttaattgcattgacaagcagcaccacacgacaggaacaggatttatcaaagtggagaataatgggaacactttcaatataggagatgattctgctactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccaaacagaagtgatagctgaaattgagtctttgataagggcagtagctgcttatttggtatttctgtgaagcttggcttcaacttgtctctcttntgttggttgtatttgaataacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117192" stop="120740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117480" g_stop="117827" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="572" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120440" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="712" r_length="140" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E615620" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117480" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACAT</genome_strand>
        <mrna_strand>TTGTAGCACATG--A-TATTACATTGATGAACCCCTTCAACTAACA-CAAATAAATAATATTACCCTTTTTTTACTTCAAGATCTTTAACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGCAACAAGAGAGTATTTTGATGACATTGCACCAAAAAGACACACTAAACCTCAACGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTATCCTTCTTCTCATGACACAATTCCCGAAAATCTTGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAGTATTACAAAGATCTTAATTGCATTGACAAGCAGCACCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGGGAACACTTTCAATATAGGAGATGATTCTGCTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCAAACAGAAGTGATAGCTGAAATTGAGTCTTTGATAAGGGCAGTAGCTGCTTATTTGGTATTTCTGTGAAGCTTGGCTTCAACTTGTCTCTCTTNTG-TTGGTTGTATTTGAATAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340816" ref_strand="+" ref_description="SGN-E340816 [cTOF-5-D23]">
      <seq>ttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttgggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117215" stop="120776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117515" g_stop="117827" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="406" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="541" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120479" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="722" r_length="181" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E340816" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117515" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTT-GGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTT</genome_strand>
        <mrna_strand>TTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294546" ref_strand="+" ref_description="SGN-E294546 [cLET-22-I24]">
      <seq>tcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117216" stop="120249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117516" g_stop="117827" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119949" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="520" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E294546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117516" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA</genome_strand>
        <mrna_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296694" ref_strand="+" ref_description="SGN-E296694 [cLET-39-H4]">
      <seq>tcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117216" stop="120191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117516" g_stop="117827" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119891" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="462" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E296694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117516" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCT</genome_strand>
        <mrna_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341789" ref_strand="+" ref_description="SGN-E341789 [cTOF-9-C18]">
      <seq>aaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgggaagcttggcttcaaacttgtgtctcttttgtttgggtggtattttgaataacatgctatatngaattatttcaaacgattttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117232" stop="120771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117532" g_stop="117827" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="524" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120471" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="700" r_length="176" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E341789" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117532" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTC-AACTTGTGTCTCTTTTGTTT-GGTTGTA-TTTGAATAACATGCTATAT-GAATTATTTCAAACGATTTTAATG</genome_strand>
        <mrna_strand>AAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGGGAAGCTTGGCTTCAAACTTGTGTCTCTTTTGTTTGGGTGGTATTTTGAATAACATGCTATATNGAATTATTTCAAACGATTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341086" ref_strand="+" ref_description="SGN-E341086 [cTOE-22-E16]">
      <seq>tttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacggttactactctcactcactcttataacactcttattacctaaaaaatccaattacagtcgaacctctctatgacgacatcggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117248" stop="119490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117548" g_stop="117827" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119190" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="457" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E341086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117548" e_stop="117827"/>
          <exon e_start="119014" e_stop="119190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339334" ref_strand="-" ref_description="SGN-E339334 [cTOF-4-L4]">
      <seq>agaagaagaagaaaatggaagtgaatggaaatattagacccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117274" stop="120776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117574" g_stop="117827" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="348" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="483" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120488" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="672" r_length="189" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E339334" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117574" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGA-CCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCC</genome_strand>
        <mrna_strand>AGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298932" ref_strand="+" ref_description="SGN-E298932 [cLET-42-O13]">
      <seq>aagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgattggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117279" stop="120780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117579" g_stop="117827" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="342" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="477" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120480" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="658" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E298932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117579" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTA</genome_strand>
        <mrna_strand>AAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGATTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576045" ref_strand="+" ref_description="SGN-E576045 [59200]">
      <seq>agaaaatggaagtgaatggaaatattagaccaaatagaagtgatgtcatttatcaaaagaggaagaaacaaagatagaagaggcaacaagagagtatttgatgacattgcaccaaaaagacacactaaacctcaacgaagtgattattcttcaacttatgttgatcacatcaatctctatccttcttctcatgacacaattcccgaaaatcttgaattccaacgtctcgaaaatgatcctcagaaattggttgacaatggcagccaagtgacagaggaatttattgaaacagagtattacaaagatcttaattgcattgacaagcagcaccacacgacaggaacaggatttatcaaagtgaagaataatgggaacactttcaatataggagatgattctgctactgatccaagccatgtttacaaggcgaatccagtactaatgattggattccttctgctgttgatgaggtaattttatctcaggaaaagcaaacagaagtgatagctgaaattgagtctttgataagggcagtagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117283" stop="120672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117583" g_stop="117827" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="336" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120372" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="542" r_length="72" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E576045" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117583" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCT</genome_strand>
        <mrna_strand>AGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATG-TCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGCAACAAGAGAGTA-TTTGATGACATTGCACCAAAAAGACACACTAAACCTCAACGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTATCCTTCTTCTCATGACACAATTCCCGAAAATCTTGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTGACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAGTATTACAAAGATCTTAATTGCATTGACAAGCAGCACCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGAAGAATAATGGGAACACTTTCAATATAGGAGATGATTCTGCTACTGATCCAAGCCATGTTTACAAGGCGAATCCAG-TACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................G-TAATTTTATCTCAGGAAAAGCAAACAGAAGTGATAGCTGAAATTGAGTCTTTGATAAGGGCAGTAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273189" ref_strand="+" ref_description="SGN-E273189 [cLEM-24-L8]">
      <seq>tggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117299" stop="120782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117599" g_stop="117827" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="322" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="457" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120482" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="640" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E273189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117599" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATA</genome_strand>
        <mrna_strand>TGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374200" ref_strand="+" ref_description="SGN-E374200 [TUS-33-F19]">
      <seq>caaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaatttatattagccaaatatcagctaagggggtgtgatggaatggttcgaataacctaaaccattaaccagaggtctcgaatttaaactgttgtgaacgaaaaatagcattataaaggatatccttttctttctgtgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117352" stop="120916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117652" g_stop="117827" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="269" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="404" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120610" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="715" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="731"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E374200" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117652" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTCCTGT</genome_strand>
        <mrna_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300644" ref_strand="+" ref_description="SGN-E300644 [cLET-45-N7]">
      <seq>caaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117352" stop="120671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117652" g_stop="117827" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="269" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="404" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120371" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="476" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E300644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117652" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGC</genome_strand>
        <mrna_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413200" ref_strand="+" ref_description="SGN-E413200 [STM-17-D3]">
      <seq>aaatctttttttgtgtaacaactttaagactatccatagatgcagaacttcaaaatcatacctaaattttaagagaatgccatacggtaaatcttgaagttcatgcatttctctgtgctaatcagggtgtaatttactgtcgattggtaaatgtacatatgaaagacttgaatttctgtacaaattggccaaagtgtagggtatccttgctcaaagtccacatcttggcgaacatattttagtgtacaacaagtgtatcgtcaggtcctttagaattgcaaatgaaatcaaggcttcctgacctaatcaaactccagtaatatacaagctagctgcaaacacgatatcgcgcttgatcacattagatgcagtttccattttcttgtacagtgcagagttgcccataattgcagcagcatttctaaattcccgacaagtctcgtctaatctaacaatagtcctcactattacaccttcagggacatctgtgagttcacaaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120500" stop="121574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120767" g_stop="121274" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E413200" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120767" e_stop="121274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAAGGTCTTGTGTAACAACTTTAAGACAAAACACATAGATGCAGAACTTCAAAATCATACCTAAATTTTAAGAGAATGTCATACAGTAAATCCTTTAAGTTTATGTATCTCTCTGTGCTAATCATGGTGTAATCTACTGTCGATTGCTAAATGTACATTTGAAAGACTTGAATTTCTGTACAAATTAGCCAAATTGTAGGGTAGCCTTGCTCAAAGTCCACACCTTGGCGAACATATTCTAGTGTACAACATGTGTATCGTCAGGTCCTTTAGAATTGCAAATGAAATCAAGGCTTCCGGACCTAATCAAACTCCGGTAATATATAAGCTAGCTGCAAACACGATATCGCGCTTGATCACATTAGATGCAGTTTCCATTTTCTTGTACAGTGCAGAGTTGCCCATAATTGCAGCAGCATTTCTAAATTCACGACAAGTCTCGTCTAATCTAACAATAGTCCTCACTATAACACCTTCAGGGACATCTGTGAGTTCACATATCTC</genome_strand>
        <mrna_strand>AAATCTTTTT-TTGTGTAACAACTTTAAGAC-TATC-CATAGATGCAGAACTTCAAAATCATACCTAAATTTTAAGAGAATGCCATACGGTAAAT-CTTGAAGTTCATGCATTTCTCTGTGCTAATCAGGGTGTAATTTACTGTCGATTGGTAAATGTACATATGAAAGACTTGAATTTCTGTACAAATTGGCCAAAGTGTAGGGTATCCTTGCTCAAAGTCCACATCTTGGCGAACATATTTTAGTGTACAACAAGTGTATCGTCAGGTCCTTTAGAATTGCAAATGAAATCAAGGCTTCCTGACCTAATCAAACTCCAGTAATATACAAGCTAGCTGCAAACACGATATCGCGCTTGATCACATTAGATGCAGTTTCCATTTTCTTGTACAGTGCAGAGTTGCCCATAATTGCAGCAGCATTTCTAAATTCCCGACAAGTCTCGTCTAATCTAACAATAGTCCTCACTATTACACCTTCAGGGACATCTGTGAGTTCACAAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578306" ref_strand="-" ref_description="SGN-E578306 [LE12CB04]">
      <seq>gctagatgacctgaaccagaagaggcagtggcgatcatgtctctttngtgtttcagcaaaaggagacttctgaatctttcctcacgccaaagctttctcaggctaaaaagagattacatgaaactgcaataagacttggggagcttcaggctcagtttaagctgccgattgacccaaaggagtatgcccaagagaaccttaagtttggtttggttgaagtggtatatgaatgggcaaaggggaccccatttgctgagatatgtgaactcacagatgtccctgaaggtgtgatagtgaggactattgttagattagacgagacttgtcgtgaatttagaaatgctgctgcaattatgggcaactctgcactgtacaagaaaatggaaactgcatctaatgtgatcaagcgcgatatcgtgtttgcagctagcttgtatattaccggagtttgattagaggtcaggaagccttgatttcatttgcaattctaaaggacctgacgatacacatgttgtaccctagaatatgttcgccaaggtgtggactttgagcaaggctaccctacaatttggctaatttgtacagaaattcaagtctttcaaatgtacatttagcaattgacagtagattacaccctgattagcacagagagatacatgaacttaaaaggatttactgtatgacattctcttaaaatttaggtatgattttgaagttctgcatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123651" stop="120506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123351" g_stop="123238" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123237" i_stop="121571" i_length="1667">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121570" g_stop="121444" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="239" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121443" i_stop="121290" i_length="154">
            <donor d_prob="0.097" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121289" g_stop="120807" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="725" r_length="486" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="737"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E578306" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578306" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="123351" e_stop="123238"/>
          <exon e_start="121570" e_stop="121444"/>
          <exon e_start="121289" e_stop="120807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAGGTTATTTTCTTCTCAAATATTTGGTGTGATATGCTCATGTTGACGTGTTGTCATTTTTCCTGTTCATCTATGATATATATATATTCAATTGTTTTTGGTATTTTTGGATAAAAGTTTTTATTGAAGATTTTTGATAAGATTTTGTGTTTGCGGTGTCTGAGTTTTTGAGGGATCAAACCTGTATATCAGCCATGTATATTTCTTGTAATGTTTCTTTAATGGATGGGCTTAAAAGACTGTGAAGACTTCTCCTCGTTATACATTAGGTTTAATGATAGAGAACTCATCAAAATTAATTGATGAGATGATTGGAATATGATATCTATAAAAGATGTACTTTCCTTTTTATCACTGCTTTGTTGGACAATTTAGGATTCTAACTTGGTATTTATATCTAGGATGGAATAAAATACATCATTCTTGTTTTTTATGAGAACAGAACATATCATGTTAAATGTATTCTCATGTTTCACAGAATTGCATATGCAAGTTGTACGGGATGCTAGTTACTAACTTGGGTGTATCTCAATAATTGGATTATAATATATCACATTTTTCACGGAATTGCACATCACAAGGTCACAGATCAAAGAGCTATGACACCTTTTCTTGATATAATAAAGTGGGTGCTGTGAAAGTAGAGATAAGAGTAAATGTGTGGTAAGCAATTTTTGTTTAGTGTCCCACGTTGATGGTGGAAATGGGCTGTTGTTTCTTATATGGTTTTGGGAAATCCTCATTGCATGAATTAACTTTTGGGGTTTAGTTAGGCCAAAGGTCCATTTCTCGTCATGGTATTAAAGCCAGACCTGTTCCTGTTCTTGGTTCACTCAGCATTGGGCCCCACTGTTTGTTGTTCGCTCTCCAATTATCCAGTCCTGAGCGTGTGAGTAATGTTAAATGTTCCACATTGGTGGTGAAAATGTGTTGTTGTCTCCTTATATGGTCCTGTGCGATTCTTACTTCATGAGTTTTGGAGTTGATTTAGGCTCAAGACTCATTTCTTATCAAGTTGTTTCTTCTTTATTATAGTGAATACACTTTTTAGAGGGAAACGAATTTTCTGGCCAGCTGCTAATTCTCTTATATTGTCAGTGTGTACTCTGCTTTTCCTTTATTGAAAGATTTTTTGAAAATGGGATTTGGTCAGATTTACGAATCAAGCATGTAGTGGTCTAAGACCTGGTTGCTGCTTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGGATGTCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTCAAAAAGTTACTGAACAACAGAGAATAGAGTTTTACACACTTCAGATCTTCCACAGAACATTTCTGTCAGTATTTGTGCCAACAAAGGCTGTTACTGTTTAAACGGTGTATGGCCAATTGGCTCTCTTTTACTTCTGAAGTCATGTCATCTCCTCCTTGCACTTGTCAATGTTGTCTACTTGTTTTTATTTGACTAGTGCAACTGTAGTTGTTGATTACGGTAATTTCATTCTTATAACTTCATTTGTACTTTTTCTTATTGTTTCAAGTCATTCTGATGTATTCTGTAGGTATTTTCTCATTAATTACCATGAGCTGTAACTTAACCCTGTTCTTTGATATTATAGTTTTTCTTTTTACTTTGTTCTCAATGACAATATCATTCTCGTGGCATTTCAGATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAGGTTCTCTCTCTCTCTCACTCACACACGCACACAAAAAAAATTAAGGATTTGCATGTGTGGTTGCGTATGACTTAATTATCATAATATCCTACCTGTTGCTTGATTCTTCCGTTCTTGAGTGTGGGGTGTCTCTAATTCTGCTTCCGTCTTGCAGGGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTATATATTACCGGAGTTTGATT--AGGTCCGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAAACTT-AAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</genome_strand>
        <mrna_strand>GCTAGATGACCT-GAACCAGAAGAGGCAGTGGCGATCATGTC-TCTTTNGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAG..........................................................................................................................................................GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTGATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTGTATATTACCGGAGTTTGATTAGAGGTCAGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACCCTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATTGACAGTAGATTACACCCTGATTAGCACAGAGAGATACATGAACTTAAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413199" ref_strand="+" ref_description="SGN-E413199 [STM-17-D3]">
      <seq>ctcaaggctcatttcttatcaagttgtttcttctttgttatagtgaatacactttatagagggaaaagaattttcgggccagctgccaattctcttacattgtcagtgtatgccctgcttttcctttattgaaagattttttgaagatgggatttggtcagatttacaaatcaagcatgtaatggtctctaagacctggttgctgattttgggtctttctctgaatgcacaactgctagtggaatatcttttgactgcaaaatatccaaatttccttctgtaaagaagttactggaacaacagaggatagagttttacacagcttcagatcttccgcagaacatttctgtcattatttgtgcctacaaaggctgttatgtttaaacggtgtatggccacttcgctctcttttacttctgaagtcatgtcatctcctccttgcactttgtcaatgttgtctacttgtctttagttgactagtgcaactctagttgttgattacagtaatttcattctgatagcttcattcatattttttctagttgtttcaagtcattctgatgtattctgtangtattttctcattaattaccatgagctgtaacttaaccctgttctttgggattatagntttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122548" stop="121315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122248" g_stop="121614" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E413199" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122248" e_stop="121614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGACTCATTTCTTATCAAGTTGTTTCTTCTTTATTATAGTGAATACACTTTTTAGAGGGAAACGAATTTTCTGGCCAGCTGCTAATTCTCTTATATTGTCAGTGTGTACTCTGCTTTTCCTTTATTGAAAGATTTTTTGAAAATGGGATTTGGTCAGATTTACGAATCAAGCATGTAGTGG--TCTAAGACCTGGTTGCTGCTTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGGATGTCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTCAAAAAGTTACT-GAACAACAGAGAATAGAGTTTTACACA-CTTCAGATCTTCCACAGAACATTTCTGTCAGTATTTGTGCCAACAAAGGCTGTTACTGTTTAAACGGTGTATGGCCAATTGGCTCTCTTTTACTTCTGAAGTCATGTCATCTCCTCCTTGCAC-TTGTCAATGTTGTCTACTTGTTTTTATTTGACTAGTGCAACTGTAGTTGTTGATTACGGTAATTTCATTCTTATAACTTCATTTGTACTTTTTCTTATTGTTTCAAGTCATTCTGATGTATTCTGTAGGTATTTTCTCATTAATTACCATGAGCTGTAACTTAACCCTGTTCTTTGATATTATAGTTTTTCTTT</genome_strand>
        <mrna_strand>CTCAAGGCTCATTTCTTATCAAGTTGTTTCTTCTTTGTTATAGTGAATACACTTTATAGAGGGAAAAGAATTTTCGGGCCAGCTGCCAATTCTCTTACATTGTCAGTGTATGCCCTGCTTTTCCTTTATTGAAAGATTTTTTGAAGATGGGATTTGGTCAGATTTACAAATCAAGCATGTAATGGTCTCTAAGACCTGGTTGCTGATTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGAATATCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTAAAGAAGTTACTGGAACAACAGAGGATAGAGTTTTACACAGCTTCAGATCTTCCGCAGAACATTTCTGTCATTATTTGTGCCTACAAAGGCTGTTA-TGTTTAAACGGTGTATGGCCACTTCGCTCTCTTTTACTTCTGAAGTCATGTCATCTCCTCCTTGCACTTTGTCAATGTTGTCTACTTGTCTTTAGTTGACTAGTGCAACTCTAGTTGTTGATTACAGTAATTTCATTCTGATAGCTTCATTCATATTTTTTCTAGTTGTTTCAAGTCATTCTGATGTATTCTGTANGTATTTTCTCATTAATTACCATGAGCTGTAACTTAACCCTGTTCTTTGGGATTATAGNTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471845" ref_strand="+" ref_description="SGN-E471845 [cSTB-26-C11]">
      <seq>ctcaaggctcatttcttatcaagttgtttcttctttgttatagtgaatacactttatagagggaaaagaattttcgggccagctgccaattctcttacattgtcagtgtatgccctgcttttcctttattgaaagattttttgaagatgggatttggtcagatttacaaatcaagcatgtaatggtctctaagacctggttgctgattttgggtctttctctgaatgcacaactgctagtggaatatcttttgactgcaaaatatccaaatttccttctgtaaagaagttactggaacaacagaggatagagttttacacagcttcagatcttccgcagaacatttctgtcattatttgtgcctacaaaagctgttatgtttaaacggtgtatggccacttcgctctcttttacttctgaagtcatgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122548" stop="121520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122248" g_stop="121820" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E471845" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122248" e_stop="121820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGACTCATTTCTTATCAAGTTGTTTCTTCTTTATTATAGTGAATACACTTTTTAGAGGGAAACGAATTTTCTGGCCAGCTGCTAATTCTCTTATATTGTCAGTGTGTACTCTGCTTTTCCTTTATTGAAAGATTTTTTGAAAATGGGATTTGGTCAGATTTACGAATCAAGCATGTAGTGG--TCTAAGACCTGGTTGCTGCTTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGGATGTCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTCAAAAAGTTACT-GAACAACAGAGAATAGAGTTTTACACA-CTTCAGATCTTCCACAGAACATTTCTGTCAGTATTTGTGCCAACAAAGGCTGTTACTGTTTAAACGGTGTATGGCCAATTGGCTCTCTTTTACTTCTGAAGTCATGTCATC</genome_strand>
        <mrna_strand>CTCAAGGCTCATTTCTTATCAAGTTGTTTCTTCTTTGTTATAGTGAATACACTTTATAGAGGGAAAAGAATTTTCGGGCCAGCTGCCAATTCTCTTACATTGTCAGTGTATGCCCTGCTTTTCCTTTATTGAAAGATTTTTTGAAGATGGGATTTGGTCAGATTTACAAATCAAGCATGTAATGGTCTCTAAGACCTGGTTGCTGATTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGAATATCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTAAAGAAGTTACTGGAACAACAGAGGATAGAGTTTTACACAGCTTCAGATCTTCCGCAGAACATTTCTGTCATTATTTGTGCCTACAAAAGCTGTTA-TGTTTAAACGGTGTATGGCCACTTCGCTCTCTTTTACTTCTGAAGTCATGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288383" ref_strand="+" ref_description="SGN-E288383 [cLES-16-O1]">
      <seq>tcaacttgtgggggaataattttgacatcgattcaacattgagcttccttgaatcattgacaaactgtaggaatctaagagtactcacgcttggtggtaatccgttggatggtgttttgcctgcatctgttgggaatttctcaaactgcttgcaaatatgtgaagcatctaaatgtaaactgaatggtgtcatttcaaaacaaattactaatcttactggattgacaaggatgagtctgtcgaacaatcagttgataggccatattccaacaacagtgcaaggaatgctgaaccttcaagaactttacctatgaagcaacaagttagaaggagccataccagatgttatctgcagttgacagtatcttggtgcattagaattgtcagagaatcaattttctagtttcgttccaccatgcttagggaatgttactagtttgaggacactctatctagataacaacaagctggattctagattacctgcaagattggggggacttcaaaacatcatagagttcaatatttcatccaattatttgagtggagaaattccgctagagagcggaaacttgaatggtgcaacactgattgatctgtcaaataattatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="143629" stop="144845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143929" g_stop="144545" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-E288383" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143929" e_stop="144545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</genome_strand>
        <mrna_strand>TCAACTTGTGGGGGAATAATTTTGACATCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGGAATTTCTCAAACTGCTTGCAAATATGTGAAGCATCTAAATGTAAACTGAATGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGCCATATTCCAACAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTATGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTGACAGTATCTTGGTGCATTAGAATTGTCAGAGAATCAATTTTCTAGTTTCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAATGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="151642" stop="150583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151342" g_stop="150884" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151342" e_stop="150884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAA-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTA-AAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>259</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="108"/>
            <exon e_start="429" e_stop="634"/>
            <exon e_start="733" e_stop="1069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.846" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="108" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="109" i_stop="428" i_length="320"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="429" e_stop="634" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.846">
            <gDNA_intron_boundary i_start="635" i_stop="732" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="733" e_stop="1069" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="108"/>
              <exon start="429" stop="570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="1060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90" stop="108"/>
              <exon start="429" stop="634"/>
              <exon start="733" stop="959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="442" stop="634"/>
              <exon start="733" stop="959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="540" stop="634"/>
              <exon start="733" stop="959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="558" stop="634"/>
              <exon start="733" stop="957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="607" stop="634"/>
              <exon start="733" stop="1062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="743" stop="1068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287448" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG : GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG : GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCTC</gDNA_template>
            <first_frame> L  E  F  Y  A  P  W  C  G  H  C  K  S  L  A  P  I  L  D  E  V  A  V  S  F  E  S  D  P  D  V  L  I  A  K  L  :  D  A  T  A  N  D  L  P  K  G  D  F  D  V  Q  G  F  P  T  M  Y  F  R  S  A  S  G  N  L  S  Q  Y  N  G  E  R  T  K  E  A  I  I  E  F  I  E  K  N  R  G  K  P  A  Q  S  D  S  A  K  V  D  S  A  K  D  E  L  *  R :   T  L  G  T  L  C  T  G  G  F  K  F  C  W  K  H  C  V  S  G  E  F  D  L  P  P  D  Y  C  S  L  P  T  L  P  L  *  F  L  E  L  F  S  A  N  K  T  V  V  C  I  H  F  V  Y  R  M  *  L  D  Y  E  F  I  L  Y  L  L  R  S  S  P  T  L  *  Y  Q  Q  L  K  L  S  S  L  S  Q  N  A  T  V  G  M  Y  A  S  C  C  S  K  *  *  Y  T  I  I  K  E  V  Q  I  Y  L </first_frame>
            <second_frame>  *  S  S  M  H  L  G  V  A  T  A  R  V  W  L  Q  F  W  M  K  W  L  Y  H  L  K  A  I  L  M  F  S  L  Q  N  W :   T  Q  P  Q  M  I  S  R  K  V  T  L  M  F  R  D  S  L  L  C  T  S  D  P  P  L  V  T  C  H  S  T  M  V  R  E  Q  K  R  L  S  S  N  S  S  R  R  I  V  A  S  L  L  S  Q  T  L  P  K  S  I  Q  Q  R  M  N  F  R   : G  L  *  E  H  C  V  L  V  D  S  S  F  V  G  S  I  V  F  L  V  N  S  T  S  H  R  T  T  A  L  S  Q  R  F  R  C  S  F  W  S  F  S  A  P  I  K  R  L  Y  V  S  I  L  C  I  E  C  S  W  I  M  S  L  Y  Y  I  Y  *  E  V  L  Q  L  Y  S  I  S  S  *  S  Y  L  L  C  P  R  M  L  L  L  E  C  M  P  P  V  A  V  N  N  D  T  Q  *  L  K  K  F  K  Y  I   </second_frame>
            <third_frame>   R  V  L  C  T  L  V  W  P  L  Q  E  S  G  S  N  F  G  *  S  G  C  I  I  *  K  R  S  *  C  S  H  C  K  T   : G  R  N  R  K  *  S  P  E  R  *  L  *  C  S  G  I  P  Y  Y  V  L  Q  I  R  L  W  *  L  V  T  V  Q  W  *  E  N  K  R  G  Y  H  R  I  H  R  E  E  S  W  Q  A  C  S  V  R  L  C  Q  S  R  F  S  K  G  *  T  L  E  :  D  S  R  N  I  V  Y  W  W  I  Q  V  L  L  E  A  L  C  F  W  *  I  R  P  P  T  G  L  L  L  S  P  N  A  S  V  V  V  F  G  A  F  Q  R  Q  *  N  G  C  M  Y  P  F  C  V  S  N  V  A  G  L  *  V  Y  I  I  S  I  E  K  F  S  N  F  I  V  S  A  V  E  V  I  F  F  V  P  E  C  Y  C  W  N  V  C  L  L  L  Q  *  I  M  I  H  N  N  *  R  S  S  N  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5" stop="108"/>
                    <exon start="429" stop="634"/>
                    <exon start="733" stop="740"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMHLGVATARVWLQFWMKWLYHLKAILMFSLQNWTQPQMISRKVTLMFRDSLLCTSDPPLVTCHSTMVREQKRLSSNSSRRIVASLLSQTLPKSIQQRMNFRGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="108"/>
                    <exon start="429" stop="632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEFYAPWCGHCKSLAPILDEVAVSFESDPDVLIAKLDATANDLPKGDFDVQGFPTMYFRSASGNLSQYNGERTKEAIIEFIEKNRGKPAQSDSAKVDSAKDEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="741" stop="938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHCVLVDSSFVGSIVFLVNSTSHRTTALSQRFRCSFWSFSAPIKRLYVSILCIECSWIMSLYYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="187" e_stop="1068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="187" e_stop="1068" e_length="882"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="187" stop="970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="288" stop="954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="743" stop="1068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287448" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTTCAAATATATCT</gDNA_template>
            <first_frame> H  N  N  Q  E  R  M  C  R  I  R  I  G  F  L  V  *  K  S  E  R  T  G  W  T  F  Y  L  *  C  Y  G  F  R  C  *  R  D  F  *  *  K  T  S  V  K  C  I  K  K  E  G  L  Y  G  L  N  T  I  S  S  C  N  A  Q  D  M  Y  L  L  S  F  P  L  T  C  F  L  I  Y  R  T  Q  P  Q  M  I  S  R  K  V  T  L  M  F  R  D  S  L  L  C  T  S  D  P  P  L  V  T  C  H  S  T  M  V  R  E  Q  K  R  L  S  S  N  S  S  R  R  I  V  A  S  L  L  S  Q  T  L  P  K  S  I  Q  Q  R  M  N  F  R  G  L  V  L  F  L  K  A  S  I  V  I  S  A  I  I  G  S  L  C  Y  S  N  C  N  L  Y  *  S  P  L  I  Q  D  S  R  N  I  V  Y  W  W  I  Q  V  L  L  E  A  L  C  F  W  *  I  R  P  P  T  G  L  L  L  S  P  N  A  S  V  V  V  F  G  A  F  Q  R  Q  *  N  G  C  M  Y  P  F  C  V  S  N  V  A  G  L  *  V  Y  I  I  S  I  E  K  F  S  N  F  I  V  S  A  V  E  V  I  F  F  V  P  E  C  Y  C  W  N  V  C  L  L  L  Q  *  I  M  I  H  N  N  *  R  S  S  N  I  S </first_frame>
            <second_frame>  I  I  I  K  K  E  C  V  E  L  E  S  G  F  *  Y  K  N  Q  K  E  R  G  G  H  F  I  F  D  V  M  D  F  V  V  R  E  I  F  S  R  K  H  L  *  S  V  S  K  K  K  V  C  M  A  *  T  R  L  A  V  V  M  H  R  T  C  I  C  C  H  F  L  S  P  A  S  S  F  T  G  R  N  R  K  *  S  P  E  R  *  L  *  C  S  G  I  P  Y  Y  V  L  Q  I  R  L  W  *  L  V  T  V  Q  W  *  E  N  K  R  G  Y  H  R  I  H  R  E  E  S  W  Q  A  C  S  V  R  L  C  Q  S  R  F  S  K  G  *  T  L  E  V  W  F  S  S  L  K  H  Q  L  *  Y  L  P  L  L  V  L  C  A  T  V  I  V  I  Y  I  D  L  L  L  F  R  T  L  G  T  L  C  T  G  G  F  K  F  C  W  K  H  C  V  S  G  E  F  D  L  P  P  D  Y  C  S  L  P  T  L  P  L  *  F  L  E  L  F  S  A  N  K  T  V  V  C  I  H  F  V  Y  R  M  *  L  D  Y  E  F  I  L  Y  L  L  R  S  S  P  T  L  *  Y  Q  Q  L  K  L  S  S  L  S  Q  N  A  T  V  G  M  Y  A  S  C  C  S  K  *  *  Y  T  I  I  K  E  V  Q  I  Y   </second_frame>
            <third_frame>   *  *  S  R  K  N  V  *  N  *  N  R  V  F  S  I  K  I  R  K  N  G  V  D  I  L  S  L  M  L  W  I  S  L  L  E  R  F  L  V  E  N  I  C  K  V  Y  Q  K  R  R  F  V  W  L  K  H  D  *  Q  L  *  C  T  G  H  V  F  V  V  I  S  S  H  L  L  P  H  L  Q  D  A  T  A  N  D  L  P  K  G  D  F  D  V  Q  G  F  P  T  M  Y  F  R  S  A  S  G  N  L  S  Q  Y  N  G  E  R  T  K  E  A  I  I  E  F  I  E  K  N  R  G  K  P  A  Q  S  D  S  A  K  V  D  S  A  K  D  E  L  *  R  F  G  S  L  P  *  S  I  N  C  D  I  C  H  Y  W  F  F  V  L  Q  *  L  *  F  I  L  I  S  S  Y  S  G  L  *  E  H  C  V  L  V  D  S  S  F  V  G  S  I  V  F  L  V  N  S  T  S  H  R  T  T  A  L  S  Q  R  F  R  C  S  F  W  S  F  S  A  P  I  K  R  L  Y  V  S  I  L  C  I  E  C  S  W  I  M  S  L  Y  Y  I  Y  *  E  V  L  Q  L  Y  S  I  S  S  *  S  Y  L  L  C  P  R  M  L  L  L  E  C  M  P  P  V  A  V  N  N  D  T  Q  *  L  K  K  F  K  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="310" stop="717"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSVKCIKKEGLYGLNTISSCNAQDMYLLSFPLTCFLIYRTQPQMISRKVTLMFRDSLLCTSDPPLVTCHSTMVREQKRLSSNSSRRIVASLLSQTLPKSIQQRMNFRGLVLFLKASIVISAIIGSLCYSNCNLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="741" stop="938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHCVLVDSSFVGSIVFLVNSTSHRTTALSQRFRCSFWSFSAPIKRLYVSILCIECSWIMSLYYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28655" PGL_stop="25513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27897" e_stop="27463"/>
            <exon e_start="26963" e_stop="26748"/>
            <exon e_start="26213" e_stop="25513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="0.998"/>
          <exon-intron don_prob="0.898" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="27897" e_stop="27463" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26963" e_stop="26748" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="26213" e_stop="25513" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27897" stop="27463"/>
              <exon start="26963" stop="26915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27865" stop="27463"/>
              <exon start="26963" stop="26855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27864" stop="27463"/>
              <exon start="26963" stop="26828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27771" stop="27463"/>
              <exon start="26963" stop="26753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27654" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="26011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27604" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27575" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="26097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27548" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27531" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27519" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27519" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26107" stop="25513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCATAGAGCTCCTATATACACCAGGTATCTTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG : ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG : AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCTTATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTATCAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCAAATGAGTGATGTCCTTGTCCAATAGTCGAAAATGCCACAGGTTCACTATGTTGTTCGCTGGCACTGTCTAGAACGAGTGCAGCGACATCGTTCTCTTTGGCTGAAATTGAATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT</gDNA_template>
            <first_frame> T  S  *  S  S  Y  I  H  Q  V  S  Y  K  *  K  L  S  Y  T  F  K  E  S  H  G  K  R  R  N  K  L  C  C  L  N  S  P  K  I  S  L  G  V  F  E  E  S  E  Q  Y  R  K  Q  V  H  V  N  Y  P  L  I  S  L  *  P  S  L  Y  N  L  F  F  H  Y  V  F  P  L  M  L  Q  N  Y  P  Y  L  K  F  V  H  L  H  *  *  E  *  L  K  F  H  S  C  Q  L  N  W  K  Q  N  L  *  H  H  L  S  F  L  V  C  C  C  W  W  C  W  K  T  P  *  W  S  C  L  V  I  L  Q  R  L  L  *  G  S  F  *  :  T  Q  L  M  K  F  *  T  F  L  D  L  D  F  H  L  F  V  P  P  C  Q  S  S  T  E  G  L  D  L  L  R  T  L  V  *  V  R  T  L  V  M  M  N  N  S  R  L  *  G  L  L  G  L  K  I  V  S  *  S  S  L  D  *  Q  S  S  P  M  E  F  Q  :  K  S  R  S  L  H  L  L  R  T  L  V  E  S  *  C  W  E  R  G  M  K  *  R  P  S  E  L  V  Q  P  P  N  H  V  V  M  M  M  M  M  L  V  N  H  Q  Y  S  G  *  L  *  K  K  L  L  Q  *  A  V  Y  H  H  Y  R  E  V  L  H  E  F  H  S  *  G  E  T  L  N  F  L  Q  T  S  V  S  S  D  V  V  L  N  F  A  L  S  D  F  L  T  *  V  L  S  S  E  Y  W  L  D  H  N  F  Q  Q  L  L  H  L  S  A  Y  F  L  V  C  A  Y  L  L  V  E  P  P  N  L  N  *  I  L  Y  Q  W  K  M  L  V  A  K  Q  T  *  T  M  M  Y  *  K  R  L  Q  M  S  D  V  L  V  Q  *  S  K  M  P  Q  V  H  Y  V  V  R  W  H  C  L  E  R  V  Q  R  H  R  S  L  W  L  K  L  N  F  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  L  H  R  A  P  I  Y  T  R  Y  L  T  N  E  N  *  V  T  H  L  R  S  L  M  G  K  E  E  T  N  Y  V  V  *  T  L  L  K  Y  P  S  V  F  L  K  S  L  N  N  I  E  N  K  C  M  L  T  I  P  L  L  V  F  S  L  L  F  T  I  S  F  F  T  M  C  F  L  *  C  C  R  I  T  L  I  *  S  L  F  T  C  T  N  R  S  D  *  N  F  I  L  V  S  *  T  G  S  K  I  C  N  I  T  C  L  F  L  F  V  V  V  G  G  V  G  R  H  H  S  G  L  V  W  *  F  Y  R  D  F  F  E  A  H  F  R :   L  N  *  *  S  S  R  H  S  W  T  W  T  F  T  Y  L  F  L  P  V  K  V  Q  Q  R  A  L  T  C  *  G  L  W  F  E  Y  G  L  W  *  *  *  T  T  R  G  C  R  D  F  S  D  *  R  L  *  A  D  Q  V  L  I  D  R  A  L  R  W  N  S  R :   S  R  G  A  F  T  C  *  E  L  W  L  N  H  S  V  G  R  G  G  *  S  R  G  P  R  N  L  F  N  H  Q  I  M  W  *  *  *  *  *  C  L  *  T  I  N  T  L  A  N  C  R  K  N  F  F  N  R  L  F  T  T  I  I  V  K  C  F  M  N  F  I  P  R  E  R  L  *  I  F  C  R  L  L  C  L  R  M  W  Y  *  T  L  H  C  R  I  S  *  R  K  F  *  A  P  S  T  G  W  I  T  T  F  S  S  Y  F  I  C  Q  L  I  F  *  F  A  P  I  Y  L  L  S  L  Q  I  *  T  R  S  F  I  N  G  K  C  W  L  R  N  R  L  R  R  *  C  T  R  R  G  F  K  *  V  M  S  L  S  N  S  R  K  C  H  R  F  T  M  L  F  A  G  T  V  *  N  E  C  S  D  I  V  L  F  G  *  N  *  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   F  I  E  L  L  Y  T  P  G  I  L  Q  M  K  I  E  L  H  I  *  G  V  S  W  E  K  K  K  Q  T  M  L  F  E  L  S  *  N  I  P  R  C  F  *  R  V  *  T  I  *  K  T  S  A  C  *  L  S  P  Y  *  S  L  A  F  S  L  Q  S  L  F  S  L  C  V  S  F  N  A  A  E  L  P  L  S  E  V  C  S  L  A  L  I  G  V  T  K  I  S  F  L  S  V  E  L  E  A  K  F  V  T  S  L  V  F  S  C  L  L  L  L  V  V  L  E  D  T  I  V  V  L  F  G  D  S  T  E  T  S  L  R  L  I  L   : D  S  T  N  E  V  L  D  I  L  G  L  G  L  S  P  I  C  S  S  L  S  K  F  N  R  G  P  *  P  V  E  D  F  G  L  S  T  D  F  G  D  D  E  Q  L  E  A  V  G  T  S  R  I  K  D  C  K  L  I  K  S  *  L  T  E  L  S  D  G  I  P   : E  V  E  E  P  S  L  A  E  N  F  G  *  I  I  V  L  G  E  G  D  E  V  E  A  L  G  T  C  S  T  T  K  S  C  G  D  D  D  D  D  A  C  E  P  S  I  L  W  L  I  V  E  K  T  S  S  I  G  C  L  P  P  L  S  *  S  A  S  *  I  S  F  L  G  R  D  F  E  F  S  A  D  F  C  V  F  G  C  G  T  E  L  C  T  V  G  F  L  N  V  S  F  E  L  R  V  L  V  G  S  Q  L  S  A  V  T  S  S  V  S  L  F  F  S  L  R  L  S  T  C  *  A  S  K  F  E  L  D  P  L  S  M  E  N  V  G  C  E  T  D  L  D  D  D  V  L  E  E  A  S  N  E  *  C  P  C  P  I  V  E  N  A  T  G  S  L  C  C  S  L  A  L  S  R  T  S  A  A  T  S  F  S  L  A  E  I  E  F  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27712" stop="27463"/>
                    <exon start="26963" stop="26878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLAFSLQSLFSLCVSFNAAELPLSEVCSLALIGVTKISFLSVELEAKFVTSLVFSCLLLLVVLEDTIVVLFGDSTETSLRLILDSTNEVLDILGLGLSPICSSLSKFNRGP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25722" stop="25513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPCPIVENATGSLCCSLALSRTSAATSFSLAEIEFSFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28655" e_stop="28591"/>
            <exon e_start="27615" e_stop="27463"/>
            <exon e_start="26963" e_stop="26748"/>
            <exon e_start="26213" e_stop="25513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.871" acc_prob="0.198" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28655" e_stop="28591" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.871" acc_prob="0.198">
            <gDNA_intron_boundary i_start="28590" i_stop="27616" i_length="975"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27615" e_stop="27463" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26963" e_stop="26748" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26747" i_stop="26214" i_length="534"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="26213" e_stop="25513" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28655" stop="28591"/>
              <exon start="27615" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="26031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27604" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27575" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="26097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27548" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27531" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27519" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27519" stop="27463"/>
              <exon start="26963" stop="26748"/>
              <exon start="26213" stop="25980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26107" stop="25513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTTTGGCTTCTTATTCTTATTTGTCTTTGCTGCAAAAATCTTACGCTTTTTGTCGCCTCAA : GAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG : ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG : AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTACCACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTGCAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAAGTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCTTATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTATCAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCAAATGAGTGATGTCCTTGTCCAATAGTCGAAAATGCCACAGGTTCACTATGTTGTTCGCTGGCACTGTCTAGAACGAGTGCAGCGACATCGTTCTCTTTGGCTGAAATTGAATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT</gDNA_template>
            <first_frame> S  T  L  A  S  Y  S  Y  L  S  L  L  Q  K  S  Y  A  F  C  R  L  K :   S  D  *  N  F  I  L  V  S  *  T  G  S  K  I  C  N  I  T  C  L  F  L  F  V  V  V  G  G  V  G  R  H  H  S  G  L  V  W  *  F  Y  R  D  F  F  E  A  H  F  R :   L  N  *  *  S  S  R  H  S  W  T  W  T  F  T  Y  L  F  L  P  V  K  V  Q  Q  R  A  L  T  C  *  G  L  W  F  E  Y  G  L  W  *  *  *  T  T  R  G  C  R  D  F  S  D  *  R  L  *  A  D  Q  V  L  I  D  R  A  L  R  W  N  S  R :   S  R  G  A  F  T  C  *  E  L  W  L  N  H  S  V  G  R  G  G  *  S  R  G  P  R  N  L  F  N  H  Q  I  M  W  *  *  *  *  *  C  L  *  T  I  N  T  L  A  N  C  R  K  N  F  F  N  R  L  F  T  T  I  I  V  K  C  F  M  N  F  I  P  R  E  R  L  *  I  F  C  R  L  L  C  L  R  M  W  Y  *  T  L  H  C  R  I  S  *  R  K  F  *  A  P  S  T  G  W  I  T  T  F  S  S  Y  F  I  C  Q  L  I  F  *  F  A  P  I  Y  L  L  S  L  Q  I  *  T  R  S  F  I  N  G  K  C  W  L  R  N  R  L  R  R  *  C  T  R  R  G  F  K  *  V  M  S  L  S  N  S  R  K  C  H  R  F  T  M  L  F  A  G  T  V  *  N  E  C  S  D  I  V  L  F  G  *  N  *  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  Q  L  W  L  L  I  L  I  C  L  C  C  K  N  L  T  L  F  V  A  S   : R  V  T  K  I  S  F  L  S  V  E  L  E  A  K  F  V  T  S  L  V  F  S  C  L  L  L  L  V  V  L  E  D  T  I  V  V  L  F  G  D  S  T  E  T  S  L  R  L  I  L   : D  S  T  N  E  V  L  D  I  L  G  L  G  L  S  P  I  C  S  S  L  S  K  F  N  R  G  P  *  P  V  E  D  F  G  L  S  T  D  F  G  D  D  E  Q  L  E  A  V  G  T  S  R  I  K  D  C  K  L  I  K  S  *  L  T  E  L  S  D  G  I  P   : E  V  E  E  P  S  L  A  E  N  F  G  *  I  I  V  L  G  E  G  D  E  V  E  A  L  G  T  C  S  T  T  K  S  C  G  D  D  D  D  D  A  C  E  P  S  I  L  W  L  I  V  E  K  T  S  S  I  G  C  L  P  P  L  S  *  S  A  S  *  I  S  F  L  G  R  D  F  E  F  S  A  D  F  C  V  F  G  C  G  T  E  L  C  T  V  G  F  L  N  V  S  F  E  L  R  V  L  V  G  S  Q  L  S  A  V  T  S  S  V  S  L  F  F  S  L  R  L  S  T  C  *  A  S  K  F  E  L  D  P  L  S  M  E  N  V  G  C  E  T  D  L  D  D  D  V  L  E  E  A  S  N  E  *  C  P  C  P  I  V  E  N  A  T  G  S  L  C  C  S  L  A  L  S  R  T  S  A  A  T  S  F  S  L  A  E  I  E  F  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   N  F  G  F  L  F  L  F  V  F  A  A  K  I  L  R  F  L  S  P  Q  :  E  *  L  K  F  H  S  C  Q  L  N  W  K  Q  N  L  *  H  H  L  S  F  L  V  C  C  C  W  W  C  W  K  T  P  *  W  S  C  L  V  I  L  Q  R  L  L  *  G  S  F  *  :  T  Q  L  M  K  F  *  T  F  L  D  L  D  F  H  L  F  V  P  P  C  Q  S  S  T  E  G  L  D  L  L  R  T  L  V  *  V  R  T  L  V  M  M  N  N  S  R  L  *  G  L  L  G  L  K  I  V  S  *  S  S  L  D  *  Q  S  S  P  M  E  F  Q  :  K  S  R  S  L  H  L  L  R  T  L  V  E  S  *  C  W  E  R  G  M  K  *  R  P  S  E  L  V  Q  P  P  N  H  V  V  M  M  M  M  M  L  V  N  H  Q  Y  S  G  *  L  *  K  K  L  L  Q  *  A  V  Y  H  H  Y  R  E  V  L  H  E  F  H  S  *  G  E  T  L  N  F  L  Q  T  S  V  S  S  D  V  V  L  N  F  A  L  S  D  F  L  T  *  V  L  S  S  E  Y  W  L  D  H  N  F  Q  Q  L  L  H  L  S  A  Y  F  L  V  C  A  Y  L  L  V  E  P  P  N  L  N  *  I  L  Y  Q  W  K  M  L  V  A  K  Q  T  *  T  M  M  Y  *  K  R  L  Q  M  S  D  V  L  V  Q  *  S  K  M  P  Q  V  H  Y  V  V  R  W  H  C  L  E  R  V  Q  R  H  R  S  L  W  L  K  L  N  F  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28654" stop="28591"/>
                    <exon start="27615" stop="27463"/>
                    <exon start="26963" stop="26878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLWLLILICLCCKNLTLFVASRVTKISFLSVELEAKFVTSLVFSCLLLLVVLEDTIVVLFGDSTETSLRLILDSTNEVLDILGLGLSPICSSLSKFNRGP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25722" stop="25513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPCPIVENATGSLCCSLALSRTSAATSFSLAEIEFSFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25528" PGL_stop="26048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25528" e_stop="26048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25528" e_stop="26048" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25528" stop="26048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25528" stop="25846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATTCAATTTCAGCCAAAGAGAACGATGTCGCTGCACTCGTTCTAGACAGTGCCAGCGAACAACATAGTGAACCTGTGGCATTTTCGACTATTGGACAAGGACATCACTCATTTGAAGCCTCTTCTAGTACATCATCGTCTAAGTCTGTTTCGCAACCAACATTTTCCATTGATAAAGGATCTAGTTCAAATTTGGAGGCTCAACAAGTAGATAGGCGCAAACTAAAAAATAAGCTGACAGATGAAGTAACTGCTGAAAGTTGTGATCCAACCAGTACTCGGAGCTCAAAACTTACGTTAAGAAATCCGACAGTGCAAAGTTCAGTACCACATCCGAAGACACAGAAGTCTGCAGAAAATTCAAAGTCTCTCCCTAGGAATGAAATTCATGAAGCACTTCACGATAATGGTGGTAAACAGCCTATTGAAG</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  K  F  N  F  S  Q  R  E  R  C  R  C  T  R  S  R  Q  C  Q  R  T  T  *  *  T  C  G  I  F  D  Y  W  T  R  T  S  L  I  *  S  L  F  *  Y  I  I  V  *  V  C  F  A  T  N  I  F  H  *  *  R  I  *  F  K  F  G  G  S  T  S  R  *  A  Q  T  K  K  *  A  D  R  *  S  N  C  *  K  L  *  S  N  Q  Y  S  E  L  K  T  Y  V  K  K  S  D  S  A  K  F  S  T  T  S  E  D  T  E  V  C  R  K  F  K  V  S  P  *  E  *  N  S  *  S  T  S  R  *  W  W  *  T  A  Y  *   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  E  N  S  I  S  A  K  E  N  D  V  A  A  L  V  L  D  S  A  S  E  Q  H  S  E  P  V  A  F  S  T  I  G  Q  G  H  H  S  F  E  A  S  S  S  T  S  S  S  K  S  V  S  Q  P  T  F  S  I  D  K  G  S  S  S  N  L  E  A  Q  Q  V  D  R  R  K  L  K  N  K  L  T  D  E  V  T  A  E  S  C  D  P  T  S  T  R  S  S  K  L  T  L  R  N  P  T  V  Q  S  S  V  P  H  P  K  T  Q  K  S  A  E  N  S  K  S  L  P  R  N  E  I  H  E  A  L  H  D  N  G  G  K  Q  P  I  E  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  I  Q  F  Q  P  K  R  T  M  S  L  H  S  F  *  T  V  P  A  N  N  I  V  N  L  W  H  F  R  L  L  D  K  D  I  T  H  L  K  P  L  L  V  H  H  R  L  S  L  F  R  N  Q  H  F  P  L  I  K  D  L  V  Q  I  W  R  L  N  K  *  I  G  A  N  *  K  I  S  *  Q  M  K  *  L  L  K  V  V  I  Q  P  V  L  G  A  Q  N  L  R  *  E  I  R  Q  C  K  V  Q  Y  H  I  R  R  H  R  S  L  Q  K  I  Q  S  L  S  L  G  M  K  F  M  K  H  F  T  I  M  V  V  N  S  L  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25529" stop="26047"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFENSISAKENDVAALVLDSASEQHSEPVAFSTIGQGHHSFEASSSTSSSKSVSQPTFSIDKGSSSNLEAQQVDRRKLKNKLTDEVTAESCDPTSTRSSKLTLRNPTVQSSVPHPKTQKSAENSKSLPRNEIHEALHDNGGKQPIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26966" PGL_stop="27251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26966" e_stop="27251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26966" e_stop="27251" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26966" stop="27251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATCAGACCAACTTCATCATACAGATGCTAAAACGGTACGTTTATATAGACTGGATCAAATGATACCTTCAATTACTTAAGTTATATATACTGACAGTATGGTAGGATTATTTTTGTTAGTATGATAAACCAAACCACCCTTTAGAGAATAGGTTCTCCTATTTTCGCACTTATCAGTACATAAAACTTACCCTCTCTTTGAAACAGCATAAATAGATGGTCTTTTCTTGTTACATTCATTATATCATATTTTTGTGCTTGTGAAAATAATGTAATACGGAGTCA</gDNA_template>
            <first_frame> A  S  D  Q  L  H  H  T  D  A  K  T  V  R  L  Y  R  L  D  Q  M  I  P  S  I  T  *  V  I  Y  T  D  S  M  V  G  L  F  L  L  V  *  *  T  K  P  P  F  R  E  *  V  L  L  F  S  H  L  S  V  H  K  T  Y  P  L  F  E  T  A  *  I  D  G  L  F  L  L  H  S  L  Y  H  I  F  V  L  V  K  I  M  *  Y  G  V  </first_frame>
            <second_frame>  H  Q  T  N  F  I  I  Q  M  L  K  R  Y  V  Y  I  D  W  I  K  *  Y  L  Q  L  L  K  L  Y  I  L  T  V  W  *  D  Y  F  C  *  Y  D  K  P  N  H  P  L  E  N  R  F  S  Y  F  R  T  Y  Q  Y  I  K  L  T  L  S  L  K  Q  H  K  *  M  V  F  S  C  Y  I  H  Y  I  I  F  L  C  L  *  K  *  C  N  T  E  S </second_frame>
            <third_frame>   I  R  P  T  S  S  Y  R  C  *  N  G  T  F  I  *  T  G  S  N  D  T  F  N  Y  L  S  Y  I  Y  *  Q  Y  G  R  I  I  F  V  S  M  I  N  Q  T  T  L  *  R  I  G  S  P  I  F  A  L  I  S  T  *  N  L  P  S  L  *  N  S  I  N  R  W  S  F  L  V  T  F  I  I  S  Y  F  C  A  C  E  N  N  V  I  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0054K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29744" PGL_stop="37877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29927" e_stop="30247"/>
            <exon e_start="31699" e_stop="31903"/>
            <exon e_start="31997" e_stop="32087"/>
            <exon e_start="32785" e_stop="32930"/>
            <exon e_start="33273" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37104"/>
            <exon e_start="37849" e_stop="37877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="29927" e_stop="30247" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31699" e_stop="31903" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.885">
            <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31997" e_stop="32087" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32930" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33516" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="37104" e_length="665"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744"/>
          </intron>
          <exon e_serial="10" e_score="0.786">
            <gDNA_exon_boundary e_start="37849" e_stop="37877" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29927" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29927" stop="30196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29945" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29970" stop="30247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29975" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29978" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29987" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30002" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30228" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31793" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32882" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33293" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33407" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33445" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36706" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36765" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36800" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="37104"/>
              <exon start="37849" stop="37877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36906" stop="37104"/>
              <exon start="37849" stop="37876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCTTCTTCTAAGTTTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG : GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG : AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATAT : AAGGAAAAAAAAAAAGAAGAAAAATAATG</gDNA_template>
            <first_frame> F  L  L  L  L  S  L  T  C  S  E  R  *  W  L  F  H  L  S  P  F  S  S  F  L  N  N  P  T  F  K  F  F  P  S  Y  Y  *  H  K  Y  L  R  K  I  S  T  F  L  L  N  T  C  N  K  Q  K  W  I  L  C  T  R  T  H  Q  L  L  L  R  K  E  *  K  I  C  C  L  G  *  H  L  K  K  K  *  A  K  *  L  R  S  N  A  V  L  L  P  P  L  S  L  L  T  F  L  *  :  G  V  Y  S  V  L  E  A  V  R  H  L  R  M  L  H  R  K  L  G  Q  I  W  L  T  D  F  K  R  L  R  W  N  H  G  L  G  F  R  F  F  M  E  L  T  L  F  M  A  I  T  M  F  M  V  L  P  F  F  H  K  M  W  A  L  E  P  P   : E  M  Q  T  W  F  R  R  L  G  L  *  L  L  L  K  S  G  L  V  A  L  T  I  L  L  L  P  V  L  L :   Y  V  E  I  P  G  G  E  D  A  M  R  V  M  A  K  T  P  N  L  L  G  R  *  P  Q  L  S  Q  A  C  K  G  N  H  L  L  D  T  P  K  T  I  L  F  *  L  E   : E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  I :   R  K  K  K  K  K  K  N  N  </first_frame>
            <second_frame>  F  F  F  F  *  V  *  L  A  V  S  V  N  G  Y  S  T  Y  H  H  F  L  H  F  S  I  I  P  L  L  S  S  F  P  V  T  I  N  T  N  I  *  E  K  S  Q  L  F  C  *  I  L  V  I  S  R  N  G  F  C  V  Q  E  P  I  S  S  Y  *  G  K  S  K  R  F  V  V  S  D  D  T  *  R  K  N  R  P  N  D  S  D  R  T  Q  C  C  Y  P  L  C  H  Y  *  P  F  Y  R :   E  Y  T  Q  C  W  R  Q  C  A  I  *  G  C  S  I  G  S  L  G  R  Y  G  *  R  I  S  K  G  C  A  G  I  T  A  W  D  S  A  S  L  W  S  *  R  Y  S  W  Q  *  Q  C  L  W  C  Y  R  F  S  T  K  C  G  P  W  S  H  Q  :  R  C  R  L  G  S  E  D  W  D  C  D  C  S  *  S  Q  G  L  W  H  *  L  Y  F  C  S  L  C  C   : C  M  *  R  S  Q  V  G  K  M  L  *  E  L  W  R  R  H  R  T  Y  *  E  D  D  L  N  C  H  R  L  A  R  A  T  T  S  W  I  P  P  K  L  S  F  S  S  W  K  :  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I   : *  G  K  K  K  R  R  K  I  M </second_frame>
            <third_frame>   S  S  S  S  K  F  N  L  Q  *  A  L  M  A  I  P  L  I  T  I  F  F  I  S  Q  *  S  H  F  *  V  L  S  Q  L  L  L  T  Q  I  F  K  K  N  L  N  F  F  V  E  Y  L  *  *  A  E  M  D  F  V  Y  K  N  P  S  A  L  I  E  E  R  V  K  D  L  L  S  R  M  T  L  E  E  K  I  G  Q  M  T  Q  I  E  R  S  V  A  T  P  S  V  I  T  D  L  S  I   : G  S  I  L  S  V  G  G  S  A  P  F  E  D  A  P  S  E  A  W  A  D  M  V  D  G  F  Q  K  A  A  L  E  S  R  L  G  I  P  L  L  Y  G  V  D  A  I  H  G  N  N  N  V  Y  G  A  T  V  F  P  Q  N  V  G  L  G  A  T  R :   D  A  D  L  V  Q  K  I  G  I  V  T  A  L  E  V  R  A  C  G  I  N  Y  T  F  A  P  C  V  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  G  E  D  T  E  L  I  R  K  M  T  S  I  V  T  G  L  Q  G  Q  P  P  P  G  Y  P  Q  N  Y  P  F  L  A  G  R :   D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  :  K  E  K  K  K  E  E  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30091" stop="30247"/>
                    <exon start="31699" stop="31903"/>
                    <exon start="31997" stop="32087"/>
                    <exon start="32785" stop="32930"/>
                    <exon start="33273" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEMDFVYKNPSALIEERVKDLLSRMTLEEKIGQMTQIERSVATPSVITDLSIGSILSVGGSAPFEDAPSEAWADMVDGFQKAALESRLGIPLLYGVDAIHGNNNVYGATVFPQNVGLGATRDADLVQKIGIVTALEVRACGINYTFAPCVAVCRDPRWGRCYESYGEDTELIRKMTSIVTGLQGQPPPGYPQNYPFLAGRDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29927" e_stop="30247"/>
            <exon e_start="31699" e_stop="31903"/>
            <exon e_start="31997" e_stop="32087"/>
            <exon e_start="32785" e_stop="32930"/>
            <exon e_start="33273" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="29927" e_stop="30247" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31699" e_stop="31903" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.885">
            <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31997" e_stop="32087" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32930" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33516" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="36440" e_stop="37170" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29927" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29927" stop="30196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29945" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29970" stop="30247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29975" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29978" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29987" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30002" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30228" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31793" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32882" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33293" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33407" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33445" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36550" stop="37170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36706" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36765" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36800" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCTTCTTCTAAGTTTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG : GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG : AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAGC</gDNA_template>
            <first_frame> F  L  L  L  L  S  L  T  C  S  E  R  *  W  L  F  H  L  S  P  F  S  S  F  L  N  N  P  T  F  K  F  F  P  S  Y  Y  *  H  K  Y  L  R  K  I  S  T  F  L  L  N  T  C  N  K  Q  K  W  I  L  C  T  R  T  H  Q  L  L  L  R  K  E  *  K  I  C  C  L  G  *  H  L  K  K  K  *  A  K  *  L  R  S  N  A  V  L  L  P  P  L  S  L  L  T  F  L  *  :  G  V  Y  S  V  L  E  A  V  R  H  L  R  M  L  H  R  K  L  G  Q  I  W  L  T  D  F  K  R  L  R  W  N  H  G  L  G  F  R  F  F  M  E  L  T  L  F  M  A  I  T  M  F  M  V  L  P  F  F  H  K  M  W  A  L  E  P  P   : E  M  Q  T  W  F  R  R  L  G  L  *  L  L  L  K  S  G  L  V  A  L  T  I  L  L  L  P  V  L  L :   Y  V  E  I  P  G  G  E  D  A  M  R  V  M  A  K  T  P  N  L  L  G  R  *  P  Q  L  S  Q  A  C  K  G  N  H  L  L  D  T  P  K  T  I  L  F  *  L  E   : E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  M  *  T  R  K  N  A  *  Q  F  H  L  I  T  I  *  N  I  Q  L  I  L   </first_frame>
            <second_frame>  F  F  F  F  *  V  *  L  A  V  S  V  N  G  Y  S  T  Y  H  H  F  L  H  F  S  I  I  P  L  L  S  S  F  P  V  T  I  N  T  N  I  *  E  K  S  Q  L  F  C  *  I  L  V  I  S  R  N  G  F  C  V  Q  E  P  I  S  S  Y  *  G  K  S  K  R  F  V  V  S  D  D  T  *  R  K  N  R  P  N  D  S  D  R  T  Q  C  C  Y  P  L  C  H  Y  *  P  F  Y  R :   E  Y  T  Q  C  W  R  Q  C  A  I  *  G  C  S  I  G  S  L  G  R  Y  G  *  R  I  S  K  G  C  A  G  I  T  A  W  D  S  A  S  L  W  S  *  R  Y  S  W  Q  *  Q  C  L  W  C  Y  R  F  S  T  K  C  G  P  W  S  H  Q  :  R  C  R  L  G  S  E  D  W  D  C  D  C  S  *  S  Q  G  L  W  H  *  L  Y  F  C  S  L  C  C   : C  M  *  R  S  Q  V  G  K  M  L  *  E  L  W  R  R  H  R  T  Y  *  E  D  D  L  N  C  H  R  L  A  R  A  T  T  S  W  I  P  P  K  L  S  F  S  S  W  K  :  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I  C  E  Q  G  K  M  R  N  S  F  I  *  *  R  Y  K  I  F  N  L  F  *  </second_frame>
            <third_frame>   S  S  S  S  K  F  N  L  Q  *  A  L  M  A  I  P  L  I  T  I  F  F  I  S  Q  *  S  H  F  *  V  L  S  Q  L  L  L  T  Q  I  F  K  K  N  L  N  F  F  V  E  Y  L  *  *  A  E  M  D  F  V  Y  K  N  P  S  A  L  I  E  E  R  V  K  D  L  L  S  R  M  T  L  E  E  K  I  G  Q  M  T  Q  I  E  R  S  V  A  T  P  S  V  I  T  D  L  S  I   : G  S  I  L  S  V  G  G  S  A  P  F  E  D  A  P  S  E  A  W  A  D  M  V  D  G  F  Q  K  A  A  L  E  S  R  L  G  I  P  L  L  Y  G  V  D  A  I  H  G  N  N  N  V  Y  G  A  T  V  F  P  Q  N  V  G  L  G  A  T  R :   D  A  D  L  V  Q  K  I  G  I  V  T  A  L  E  V  R  A  C  G  I  N  Y  T  F  A  P  C  V  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  G  E  D  T  E  L  I  R  K  M  T  S  I  V  T  G  L  Q  G  Q  P  P  P  G  Y  P  Q  N  Y  P  F  L  A  G  R :   D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  V  N  K  E  K  C  V  T  V  S  F  N  N  D  I  K  Y  S  T  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30091" stop="30247"/>
                    <exon start="31699" stop="31903"/>
                    <exon start="31997" stop="32087"/>
                    <exon start="32785" stop="32930"/>
                    <exon start="33273" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEMDFVYKNPSALIEERVKDLLSRMTLEEKIGQMTQIERSVATPSVITDLSIGSILSVGGSAPFEDAPSEAWADMVDGFQKAALESRLGIPLLYGVDAIHGNNNVYGATVFPQNVGLGATRDADLVQKIGIVTALEVRACGINYTFAPCVAVCRDPRWGRCYESYGEDTELIRKMTSIVTGLQGQPPPGYPQNYPFLAGRDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29744" e_stop="29793"/>
            <exon e_start="29985" e_stop="30247"/>
            <exon e_start="31699" e_stop="31903"/>
            <exon e_start="31997" e_stop="32087"/>
            <exon e_start="32785" e_stop="32930"/>
            <exon e_start="33273" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37104"/>
            <exon e_start="37849" e_stop="37877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.540"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.540">
            <gDNA_exon_boundary e_start="29744" e_stop="29793" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29794" i_stop="29984" i_length="191"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29985" e_stop="30247" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31699" e_stop="31903" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.885">
            <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31997" e_stop="32087" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32930" e_length="146"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33516" e_length="244"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="8" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="37104" e_length="665"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744"/>
          </intron>
          <exon e_serial="11" e_score="0.786">
            <gDNA_exon_boundary e_start="37849" e_stop="37877" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29744" stop="29793"/>
              <exon start="29985" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29987" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30002" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30228" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31793" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32882" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33293" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33407" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33445" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36706" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36765" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36800" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="37104"/>
              <exon start="37849" stop="37877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36906" stop="37104"/>
              <exon start="37849" stop="37876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCAAACTATAAATGGAGGATATTTTTTACCCTTTTCCTTTTTAATATA : CATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG : GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG : AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATAT : AAGGAAAAAAAAAAAGAAGAAAAATAATG</gDNA_template>
            <first_frame> N  Q  T  I  N  G  G  Y  F  L  P  F  S  F  L  I  Y :   I  F  F  I  S  Q  *  S  H  F  *  V  L  S  Q  L  L  L  T  Q  I  F  K  K  N  L  N  F  F  V  E  Y  L  *  *  A  E  M  D  F  V  Y  K  N  P  S  A  L  I  E  E  R  V  K  D  L  L  S  R  M  T  L  E  E  K  I  G  Q  M  T  Q  I  E  R  S  V  A  T  P  S  V  I  T  D  L  S  I   : G  S  I  L  S  V  G  G  S  A  P  F  E  D  A  P  S  E  A  W  A  D  M  V  D  G  F  Q  K  A  A  L  E  S  R  L  G  I  P  L  L  Y  G  V  D  A  I  H  G  N  N  N  V  Y  G  A  T  V  F  P  Q  N  V  G  L  G  A  T  R :   D  A  D  L  V  Q  K  I  G  I  V  T  A  L  E  V  R  A  C  G  I  N  Y  T  F  A  P  C  V  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  G  E  D  T  E  L  I  R  K  M  T  S  I  V  T  G  L  Q  G  Q  P  P  P  G  Y  P  Q  N  Y  P  F  L  A  G  R :   D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  :  K  E  K  K  K  E  E  K  *   </first_frame>
            <second_frame>  T  K  L  *  M  E  D  I  F  Y  P  F  P  F  *  Y   : T  F  S  S  F  L  N  N  P  T  F  K  F  F  P  S  Y  Y  *  H  K  Y  L  R  K  I  S  T  F  L  L  N  T  C  N  K  Q  K  W  I  L  C  T  R  T  H  Q  L  L  L  R  K  E  *  K  I  C  C  L  G  *  H  L  K  K  K  *  A  K  *  L  R  S  N  A  V  L  L  P  P  L  S  L  L  T  F  L  *  :  G  V  Y  S  V  L  E  A  V  R  H  L  R  M  L  H  R  K  L  G  Q  I  W  L  T  D  F  K  R  L  R  W  N  H  G  L  G  F  R  F  F  M  E  L  T  L  F  M  A  I  T  M  F  M  V  L  P  F  F  H  K  M  W  A  L  E  P  P   : E  M  Q  T  W  F  R  R  L  G  L  *  L  L  L  K  S  G  L  V  A  L  T  I  L  L  L  P  V  L  L :   Y  V  E  I  P  G  G  E  D  A  M  R  V  M  A  K  T  P  N  L  L  G  R  *  P  Q  L  S  Q  A  C  K  G  N  H  L  L  D  T  P  K  T  I  L  F  *  L  E   : E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  I :   R  K  K  K  K  K  K  N  N  </second_frame>
            <third_frame>   P  N  Y  K  W  R  I  F  F  T  L  F  L  F  N  I  :  H  F  L  H  F  S  I  I  P  L  L  S  S  F  P  V  T  I  N  T  N  I  *  E  K  S  Q  L  F  C  *  I  L  V  I  S  R  N  G  F  C  V  Q  E  P  I  S  S  Y  *  G  K  S  K  R  F  V  V  S  D  D  T  *  R  K  N  R  P  N  D  S  D  R  T  Q  C  C  Y  P  L  C  H  Y  *  P  F  Y  R :   E  Y  T  Q  C  W  R  Q  C  A  I  *  G  C  S  I  G  S  L  G  R  Y  G  *  R  I  S  K  G  C  A  G  I  T  A  W  D  S  A  S  L  W  S  *  R  Y  S  W  Q  *  Q  C  L  W  C  Y  R  F  S  T  K  C  G  P  W  S  H  Q  :  R  C  R  L  G  S  E  D  W  D  C  D  C  S  *  S  Q  G  L  W  H  *  L  Y  F  C  S  L  C  C   : C  M  *  R  S  Q  V  G  K  M  L  *  E  L  W  R  R  H  R  T  Y  *  E  D  D  L  N  C  H  R  L  A  R  A  T  T  S  W  I  P  P  K  L  S  F  S  S  W  K  :  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I   : *  G  K  K  K  R  R  K  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30091" stop="30247"/>
                    <exon start="31699" stop="31903"/>
                    <exon start="31997" stop="32087"/>
                    <exon start="32785" stop="32930"/>
                    <exon start="33273" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEMDFVYKNPSALIEERVKDLLSRMTLEEKIGQMTQIERSVATPSVITDLSIGSILSVGGSAPFEDAPSEAWADMVDGFQKAALESRLGIPLLYGVDAIHGNNNVYGATVFPQNVGLGATRDADLVQKIGIVTALEVRACGINYTFAPCVAVCRDPRWGRCYESYGEDTELIRKMTSIVTGLQGQPPPGYPQNYPFLAGRDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="29927" e_stop="30247"/>
            <exon e_start="31699" e_stop="31903"/>
            <exon e_start="31997" e_stop="32087"/>
            <exon e_start="32785" e_stop="32930"/>
            <exon e_start="33273" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35426" e_stop="35611"/>
            <exon e_start="36440" e_stop="36513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="29927" e_stop="30247" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31699" e_stop="31903" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.885">
            <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31997" e_stop="32087" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32930" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33516" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34675" i_stop="35425" i_length="751"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35426" e_stop="35611" e_length="186"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="36513" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29927" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29927" stop="30196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29945" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29970" stop="30247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29975" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29978" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29987" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30002" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30228" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31793" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32882" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33293" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35426" stop="35611"/>
              <exon start="36440" stop="36513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCTTCTTCTAAGTTTAACTTGCAGTGAGCGTTAATGGCTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG : GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG : AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCA</gDNA_template>
            <first_frame> F  L  L  L  L  S  L  T  C  S  E  R  *  W  L  F  H  L  S  P  F  S  S  F  L  N  N  P  T  F  K  F  F  P  S  Y  Y  *  H  K  Y  L  R  K  I  S  T  F  L  L  N  T  C  N  K  Q  K  W  I  L  C  T  R  T  H  Q  L  L  L  R  K  E  *  K  I  C  C  L  G  *  H  L  K  K  K  *  A  K  *  L  R  S  N  A  V  L  L  P  P  L  S  L  L  T  F  L  *  :  G  V  Y  S  V  L  E  A  V  R  H  L  R  M  L  H  R  K  L  G  Q  I  W  L  T  D  F  K  R  L  R  W  N  H  G  L  G  F  R  F  F  M  E  L  T  L  F  M  A  I  T  M  F  M  V  L  P  F  F  H  K  M  W  A  L  E  P  P   : E  M  Q  T  W  F  R  R  L  G  L  *  L  L  L  K  S  G  L  V  A  L  T  I  L  L  L  P  V  L  L :   Y  V  E  I  P  G  G  E  D  A  M  R  V  M  A  K  T  P  N  L  L  G  R  *  P  Q  L  S  Q  A  C  K  G  N  H  L  L  D  T  P  K  T  I  L  F  *  L  E   : E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  </first_frame>
            <second_frame>  F  F  F  F  *  V  *  L  A  V  S  V  N  G  Y  S  T  Y  H  H  F  L  H  F  S  I  I  P  L  L  S  S  F  P  V  T  I  N  T  N  I  *  E  K  S  Q  L  F  C  *  I  L  V  I  S  R  N  G  F  C  V  Q  E  P  I  S  S  Y  *  G  K  S  K  R  F  V  V  S  D  D  T  *  R  K  N  R  P  N  D  S  D  R  T  Q  C  C  Y  P  L  C  H  Y  *  P  F  Y  R :   E  Y  T  Q  C  W  R  Q  C  A  I  *  G  C  S  I  G  S  L  G  R  Y  G  *  R  I  S  K  G  C  A  G  I  T  A  W  D  S  A  S  L  W  S  *  R  Y  S  W  Q  *  Q  C  L  W  C  Y  R  F  S  T  K  C  G  P  W  S  H  Q  :  R  C  R  L  G  S  E  D  W  D  C  D  C  S  *  S  Q  G  L  W  H  *  L  Y  F  C  S  L  C  C   : C  M  *  R  S  Q  V  G  K  M  L  *  E  L  W  R  R  H  R  T  Y  *  E  D  D  L  N  C  H  R  L  A  R  A  T  T  S  W  I  P  P  K  L  S  F  S  S  W  K  :  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S </second_frame>
            <third_frame>   S  S  S  S  K  F  N  L  Q  *  A  L  M  A  I  P  L  I  T  I  F  F  I  S  Q  *  S  H  F  *  V  L  S  Q  L  L  L  T  Q  I  F  K  K  N  L  N  F  F  V  E  Y  L  *  *  A  E  M  D  F  V  Y  K  N  P  S  A  L  I  E  E  R  V  K  D  L  L  S  R  M  T  L  E  E  K  I  G  Q  M  T  Q  I  E  R  S  V  A  T  P  S  V  I  T  D  L  S  I   : G  S  I  L  S  V  G  G  S  A  P  F  E  D  A  P  S  E  A  W  A  D  M  V  D  G  F  Q  K  A  A  L  E  S  R  L  G  I  P  L  L  Y  G  V  D  A  I  H  G  N  N  N  V  Y  G  A  T  V  F  P  Q  N  V  G  L  G  A  T  R :   D  A  D  L  V  Q  K  I  G  I  V  T  A  L  E  V  R  A  C  G  I  N  Y  T  F  A  P  C  V  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  G  E  D  T  E  L  I  R  K  M  T  S  I  V  T  G  L  Q  G  Q  P  P  P  G  Y  P  Q  N  Y  P  F  L  A  G  R :   D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30091" stop="30247"/>
                    <exon start="31699" stop="31903"/>
                    <exon start="31997" stop="32087"/>
                    <exon start="32785" stop="32930"/>
                    <exon start="33273" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35426" stop="35461"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEMDFVYKNPSALIEERVKDLLSRMTLEEKIGQMTQIERSVATPSVITDLSIGSILSVGGSAPFEDAPSEAWADMVDGFQKAALESRLGIPLLYGVDAIHGNNNVYGATVFPQNVGLGATRDADLVQKIGIVTALEVRACGINYTFAPCVAVCRDPRWGRCYESYGEDTELIRKMTSIVTGLQGQPPPGYPQNYPFLAGRDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHHVKQFANHWFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="31995" e_stop="32087"/>
            <exon e_start="32785" e_stop="32930"/>
            <exon e_start="33273" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37104"/>
            <exon e_start="37849" e_stop="37877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31995" e_stop="32087" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32930" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33516" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="37104" e_length="665"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744"/>
          </intron>
          <exon e_serial="8" e_score="0.786">
            <gDNA_exon_boundary e_start="37849" e_stop="37877" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31995" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31995" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32028" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32823" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32871" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32882" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33293" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33407" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33445" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36706" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36765" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36800" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="37104"/>
              <exon start="37849" stop="37877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36906" stop="37104"/>
              <exon start="37849" stop="37876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATAT : AAGGAAAAAAAAAAAGAAGAAAAATAATG</gDNA_template>
            <first_frame> R  D  A  D  L  V  Q  K  I  G  I  V  T  A  L  E  V  R  A  C  G  I  N  Y  T  F  A  P  C  V  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  G  E  D  T  E  L  I  R  K  M  T  S  I  V  T  G  L  Q  G  Q  P  P  P  G  Y  P  Q  N  Y  P  F  L  A  G  R :   D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  :  K  E  K  K  K  E  E  K  *   </first_frame>
            <second_frame>  E  M  Q  T  W  F  R  R  L  G  L  *  L  L  L  K  S  G  L  V  A  L  T  I  L  L  L  P  V  L  L :   Y  V  E  I  P  G  G  E  D  A  M  R  V  M  A  K  T  P  N  L  L  G  R  *  P  Q  L  S  Q  A  C  K  G  N  H  L  L  D  T  P  K  T  I  L  F  *  L  E   : E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  I :   R  K  K  K  K  K  K  N  N  </second_frame>
            <third_frame>   R  C  R  L  G  S  E  D  W  D  C  D  C  S  *  S  Q  G  L  W  H  *  L  Y  F  C  S  L  C  C   : C  M  *  R  S  Q  V  G  K  M  L  *  E  L  W  R  R  H  R  T  Y  *  E  D  D  L  N  C  H  R  L  A  R  A  T  T  S  W  I  P  P  K  L  S  F  S  S  W  K  :  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I   : *  G  K  K  K  R  R  K  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31995" stop="32087"/>
                    <exon start="32785" stop="32930"/>
                    <exon start="33273" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1458</number_coding_nucleotides>
                  <number_encoded_amino_acids>486</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDADLVQKIGIVTALEVRACGINYTFAPCVAVCRDPRWGRCYESYGEDTELIRKMTSIVTGLQGQPPPGYPQNYPFLAGRDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="33269" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37104"/>
            <exon e_start="37849" e_stop="37877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33269" e_stop="33516" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="37104" e_length="665"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744"/>
          </intron>
          <exon e_serial="6" e_score="0.786">
            <gDNA_exon_boundary e_start="37849" e_stop="37877" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33269" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33293" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33407" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33445" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36706" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36765" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36800" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="37104"/>
              <exon start="37849" stop="37877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36906" stop="37104"/>
              <exon start="37849" stop="37876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATAT : AAGGAAAAAAAAAAAGAAGAAAAATAATG</gDNA_template>
            <first_frame> P  E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  I :   R  K  K  K  K  K  K  N  N  </first_frame>
            <second_frame>  Q  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I   : *  G  K  K  K  R  R  K  I  M </second_frame>
            <third_frame>   R  D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  :  K  E  K  K  K  E  E  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33271" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="33322" e_stop="33328"/>
            <exon e_start="33412" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37104"/>
            <exon e_start="37849" e_stop="37877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33322" e_stop="33328" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.784">
            <gDNA_intron_boundary i_start="33329" i_stop="33411" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33412" e_stop="33516" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="37104" e_length="665"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="37105" i_stop="37848" i_length="744"/>
          </intron>
          <exon e_serial="7" e_score="0.786">
            <gDNA_exon_boundary e_start="37849" e_stop="37877" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33328"/>
              <exon start="33412" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33440" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33445" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34393" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36706" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36765" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36800" stop="37100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="37104"/>
              <exon start="37849" stop="37877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36906" stop="37104"/>
              <exon start="37849" stop="37876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCGAG : GGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATAT : AAGGAAAAAAAAAAAGAAGAAAAATAATG</gDNA_template>
            <first_frame> D  R   : G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I   : *  G  K  K  K  R  R  K  I  M </first_frame>
            <second_frame>  T  E  :  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  :  K  E  K  K  K  E  E  K  *   </second_frame>
            <third_frame>   P  R :   E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  I :   R  K  K  K  K  K  K  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33323" stop="33328"/>
                    <exon start="33412" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="36997" PGL_stop="36394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36997" e_stop="36394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="36997" e_stop="36394" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36997" stop="36394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTCTTTCTGATAGTCCGCATCTTTATAGACATGTCTATTTCACTAAACCTTTCTTCGACACATCTCGTCTAGATCACCTTGTTTTTACTTGTTAATCCGTAGCCGAATGGAAAGAGAGGTTCATAGGAGTTCTGTTCTTGATGCAGGGGTAATTGATCTACACTCTTAAACCATGTCATAGGGAGGGTTCCATGGAATTCAAAATCTCCGAATATGACATCAGTGATACCAGTTCCCTCAGTGCCCGGTAACCATGCAGCAACGAAGGCATCCATTTTCTCCAGAATCGAAGGCTCTATATGTAAAGGCCTTCCGGAGATCAATATCACCAACGTTGGAACTCTGTCTGCAACCAAGCTTATTAGTTCTTCTCCGCCAAGAGGAATTCTGAGGTCTTGGCTGTCTCCACCGCTTTCACAATAGGGAGGTTCACCAACAACTACAATGCAATAAGAGAAGTCTTGACTCGCAAAGGTGTCTGGTGAAGGATTTTCTTCATATACCAGTTCTGTTTCCCCTCCAACAGCATCTTTAATAGCTTCCAGAATAGTTGTACCTACAACAAATTATCCGTTTTAAGTAGTAAATGATCCGTGATTAAT</gDNA_template>
            <first_frame> Q  S  F  *  *  S  A  S  L  *  T  C  L  F  H  *  T  F  L  R  H  I  S  S  R  S  P  C  F  Y  L  L  I  R  S  R  M  E  R  E  V  H  R  S  S  V  L  D  A  G  V  I  D  L  H  S  *  T  M  S  *  G  G  F  H  G  I  Q  N  L  R  I  *  H  Q  *  Y  Q  F  P  Q  C  P  V  T  M  Q  Q  R  R  H  P  F  S  P  E  S  K  A  L  Y  V  K  A  F  R  R  S  I  S  P  T  L  E  L  C  L  Q  P  S  L  L  V  L  L  R  Q  E  E  F  *  G  L  G  C  L  H  R  F  H  N  R  E  V  H  Q  Q  L  Q  C  N  K  R  S  L  D  S  Q  R  C  L  V  K  D  F  L  H  I  P  V  L  F  P  L  Q  Q  H  L  *  *  L  P  E  *  L  Y  L  Q  Q  I  I  R  F  K  *  *  M  I  R  D  *  </first_frame>
            <second_frame>  S  L  S  D  S  P  H  L  Y  R  H  V  Y  F  T  K  P  F  F  D  T  S  R  L  D  H  L  V  F  T  C  *  S  V  A  E  W  K  E  R  F  I  G  V  L  F  L  M  Q  G  *  L  I  Y  T  L  K  P  C  H  R  E  G  S  M  E  F  K  I  S  E  Y  D  I  S  D  T  S  S  L  S  A  R  *  P  C  S  N  E  G  I  H  F  L  Q  N  R  R  L  Y  M  *  R  P  S  G  D  Q  Y  H  Q  R  W  N  S  V  C  N  Q  A  Y  *  F  F  S  A  K  R  N  S  E  V  L  A  V  S  T  A  F  T  I  G  R  F  T  N  N  Y  N  A  I  R  E  V  L  T  R  K  G  V  W  *  R  I  F  F  I  Y  Q  F  C  F  P  S  N  S  I  F  N  S  F  Q  N  S  C  T  Y  N  K  L  S  V  L  S  S  K  *  S  V  I  N </second_frame>
            <third_frame>   V  F  L  I  V  R  I  F  I  D  M  S  I  S  L  N  L  S  S  T  H  L  V  *  I  T  L  F  L  L  V  N  P  *  P  N  G  K  R  G  S  *  E  F  C  S  *  C  R  G  N  *  S  T  L  L  N  H  V  I  G  R  V  P  W  N  S  K  S  P  N  M  T  S  V  I  P  V  P  S  V  P  G  N  H  A  A  T  K  A  S  I  F  S  R  I  E  G  S  I  C  K  G  L  P  E  I  N  I  T  N  V  G  T  L  S  A  T  K  L  I  S  S  S  P  P  R  G  I  L  R  S  W  L  S  P  P  L  S  Q  *  G  G  S  P  T  T  T  M  Q  *  E  K  S  *  L  A  K  V  S  G  E  G  F  S  S  Y  T  S  S  V  S  P  P  T  A  S  L  I  A  S  R  I  V  V  P  T  T  N  Y  P  F  *  V  V  N  D  P  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36839" stop="36573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLLNHVIGRVPWNSKSPNMTSVIPVPSVPGNHAATKASIFSRIEGSICKGLPEINITNVGTLSATKLISSSPPRGILRSWLSPPLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40371" PGL_stop="43546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40371" e_stop="40438"/>
            <exon e_start="41756" e_stop="42076"/>
            <exon e_start="42211" e_stop="42334"/>
            <exon e_start="42820" e_stop="43546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40371" e_stop="40438" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40439" i_stop="41755" i_length="1317"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41756" e_stop="42076" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.710">
            <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42211" e_stop="42334" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="42820" e_stop="43546" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40371" stop="40438"/>
              <exon start="41756" stop="42058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="42967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41946" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41946" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41959" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41962" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41962" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41962" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41977" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="42966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42232" stop="42334"/>
              <exon start="42820" stop="43421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42232" stop="42334"/>
              <exon start="42820" stop="43171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42294" stop="42334"/>
              <exon start="42820" stop="43502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42313" stop="42334"/>
              <exon start="42820" stop="43519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42820" stop="43476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42988" stop="43409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42993" stop="43546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43074" stop="43476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43074" stop="43473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43102" stop="43546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43216" stop="43546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAG : AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG : GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG : AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</gDNA_template>
            <first_frame> M  K  Q  G  T  Q  *  L  G  L  L  L  Q  I  F  F  P  G  S  H  G  L  R :   S  *  A  Y  C  Q  D  L  E  G  L  *  D  L  L  I  F  L  Q  P  M  R  T  D  I  C  S  L  L  M  N  C  V  G  G  W  S  L  F  L  V  D  V  L  R  K  K  Y  C  T  L  D  V  Y  L  L  V  L  L  M  I  Y  A  E  L  Q  T  W  P  T  R  Q  W  L  N  M  V  L  V  R  P  L  A  L  S  Q  W  Q  H  F  L  E  V  G  W  M  M  V  D  P  C  P  G  E  G  T  R :   G  I  L  L  I  L  F  K  E  R  S  R  L  Y  C  S  L  H  L  I  L  H  S  V  L  Y  V  L  I  P  K  F  L  R  G  W  E  L  N  W  K  :  R  M  R  K  *  K  V  S  N  Y  K  N  G  *  A  W  S  L  H  Q  Q  N  L  I  F  S  *  R  A  K  K  D  L  Y  F  H  C  K  Q  A  L  D  D  R  K  C  K  L  N  P  V  N  R  V  Q  K  R  I  S  N  K  D  F  H  A  F  I  C  A  L  *  G  N  K  A  I  F  L  N  Q  M  G  I  T  C  W  H  P  D  S  V  I  L  H  V  L  V  R  *  I  D  S  Y  L  T  P  T  N  T  I  V  I  Y  H  D  H  R  L  L  T  R  R  E  G  M  R  K  R  S  S  Q  E  F  L  G  S  L  E  V  K  *  K  *  A  R  D  Q  S  D  V  C  W  Y  F  L  L  H  H  L  Y  M  C  P  I  I  L  S  N  Y  T  R  I  N  T  L  I  L  *  Y  T  S  V  L  Q  L  T  K  N  *  S  M  S  N  V  V  G  E  G  V  K  L  C  I  Q  C  N  L  S  D  Y  E  T  K  F  Q  *  V  A  I  I  F  D  L  C  K  I  T  S  I  G  *  G  N  S  D  N  S  L  C  L  W  L  </first_frame>
            <second_frame>  *  S  R  A  R  S  S  W  D  C  C  C  K  S  S  F  R  A  A  T  G  *   : E  A  E  H  I  A  K  I  W  R  G  F  R  I  Y  L  Y  S  S  N  Q  *  G  Q  I  S  A  L  C  *  *  I  A  W  E  V  G  H  S  S  W  W  T  C  C  G  R  S  I  V  L  W  T  C  I  Y  W  C  S  *  *  Y  T  Q  S  Y  R  H  G  L  Q  G  S  G  *  I  W  S  *  S  D  H  W  P  Y  L  S  G  N  T  F  W  R  W  D  G  *  W  W  I  H  V  L  G  K  G  P   : G  A  S  C  *  S  C  S  K  R  G  Q  G  F  T  A  V  C  T  *  Y  C  T  L  C  C  T  C  *  S  Q  S  S  *  G  V  G  S  S  I  G  R :   E  *  E  S  R  R  *  A  T  T  R  M  V  E  H  G  R  C  T  S  R  T  *  F  F  H  K  G  Q  R  R  I  F  T  S  T  A  S  R  L  W  M  T  E  S  A  S  L  T  Q  S  T  E  Y  K  N  E  F  R  I  R  I  S  T  P  S  S  V  L  S  R  E  T  K  L  Y  S  *  T  R  W  A  S  L  A  G  I  Q  T  A  *  F  C  M  C  *  *  G  K  L  T  A  T  *  L  L  Q  T  P  L  L  Y  T  T  I  T  D  C  *  L  E  E  K  A  C  A  K  D  L  A  K  S  F  L  V  L  *  R  *  N  E  N  R  L  V  I  R  V  M  S  V  G  I  F  F  Y  I  T  C  T  C  A  Q  L  F  L  V  I  T  Q  E  S  I  P  *  Y  C  N  I  H  L  Y  C  S  L  Q  R  T  N  P  C  L  M  L  W  E  K  V  *  N  C  V  Y  N  V  I  F  L  I  M  R  Q  S  F  S  R  L  P  *  S  L  T  C  V  K  L  Q  V  L  D  E  V  I  V  T  I  P  C  A  C  G  * </second_frame>
            <third_frame>   E  A  G  H  A  V  V  G  T  A  V  A  N  L  L  S  G  Q  P  R  V  E  :  K  L  S  I  L  P  R  S  G  G  A  L  G  F  T  Y  I  P  P  T  N  E  D  R  Y  L  L  F  V  D  E  L  R  G  R  L  V  T  L  L  G  G  R  A  A  E  E  V  L  Y  S  G  R  V  S  T  G  A  L  D  D  I  R  R  A  T  D  M  A  Y  K  A  V  A  E  Y  G  L  S  Q  T  I  G  P  I  S  V  A  T  L  S  G  G  G  M  D  D  G  G  S  M  S  W  G  R  D  Q  :  G  H  L  V  D  L  V  Q  R  E  V  K  A  L  L  Q  S  A  L  D  I  A  L  C  V  V  R  A  N  P  K  V  L  E  G  L  G  A  Q  L  E   : E  N  E  K  V  E  G  E  Q  L  Q  E  W  L  S  M  V  V  A  P  A  E  L  N  F  F  I  K  G  K  E  G  S  L  L  P  L  Q  A  G  S  G  *  Q  K  V  Q  A  *  P  S  Q  Q  S  T  K  T  N  F  E  *  G  F  P  R  L  H  L  C  S  L  G  K  Q  S  Y  I  P  E  P  D  G  H  H  L  L  A  S  R  Q  R  D  F  A  C  V  S  K  V  N  *  Q  L  L  N  S  Y  K  H  H  C  Y  I  P  R  S  Q  I  V  N  S  K  R  R  H  A  Q  K  I  *  P  R  V  S  W  F  S  R  G  E  M  K  I  G  S  *  S  E  *  C  L  L  V  F  S  S  T  S  L  V  H  V  P  N  Y  S  *  *  L  H  K  N  Q  Y  L  N  I  V  I  Y  I  C  T  A  A  Y  K  E  L  I  H  V  *  C  C  G  R  R  C  E  T  V  Y  T  M  *  S  F  *  L  *  D  K  V  S  V  G  C  H  N  L  *  L  V  *  N  Y  K  Y  W  M  R  *  *  *  Q  F  L  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40373" stop="40438"/>
                    <exon start="41756" stop="42076"/>
                    <exon start="42211" stop="42334"/>
                    <exon start="42820" stop="42947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAGHAVVGTAVANLLSGQPRVEKLSILPRSGGALGFTYIPPTNEDRYLLFVDELRGRLVTLLGGRAAEEVLYSGRVSTGALDDIRRATDMAYKAVAEYGLSQTIGPISVATLSGGGMDDGGSMSWGRDQGHLVDLVQREVKALLQSALDIALCVVRANPKVLEGLGAQLEENEKVEGEQLQEWLSMVVAPAELNFFIKGKEGSLLPLQAGSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47725" PGL_stop="46918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47725" e_stop="46918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="47725" e_stop="46918" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47725" stop="46918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  R  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  R  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  I  S  *  R  V  Y  L  V  R  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  T  L  V  L  P  I  S  T  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  S  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  *  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  V  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  *  A  E  G  F  T  *  C  G  V  *  D  E  G  S  G  S  C  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  *  P  *  C  C  Q  Y  P  P  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  A  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  H  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  N  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  V  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47723" stop="46920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMAKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIHKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDNPSAANIHLTAMFAPQSEEEKEYMSRVPYASVVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="48384" PGL_stop="47736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48384" e_stop="47736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="48384" e_stop="47736" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48384" stop="47736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="47999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  C  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  Y  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  C  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  A  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  I  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  V  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  M  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  *  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48383" stop="47736"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRCGFEDMVGYALQVAEEVDASEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYIARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="60006" PGL_stop="59504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60006" e_stop="59504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60006" e_stop="59504" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60006" stop="59504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG</gDNA_template>
            <first_frame> G  K  I  I  G  G  G  P  R  A  G  N  *  G  G  N  R  *  F  K  L  K  K  L  G  F  C  Y  C  N  W  G  L  *  C  L  L  *  D  Y  *  D  P  V  C  H  Y  P  G  R  I  L  E  L  R  Q  C  L  *  L  F  H  I  V  S  F  *  V  R  *  I  V  I  R  C  R  K  L  R  L  M  V  Y  I  *  C  S  N  *  R  V  K  *  V  V  V  *  *  R  L  R  L  *  M  *  M  K  M  E  I  V  S  C  K  I  L  R  Q  *  *  G  V  *  L  L  Q  R  K  L  C  I  L  P  R  G  R  V  I  *  R  P  L  M  R  K  C  L  R  M  M  L  S  L  V  L  P  I  N  G  L  V  D  S  *  T  L  H   </first_frame>
            <second_frame>  E  R  *  L  V  V  V  Q  G  Q  E  I  E  V  G  T  D  S  S  S  S  R  N  W  G  F  V  I  A  I  G  D  C  D  V  C  Y  E  I  T  K  T  R  F  A  I  T  R  V  G  S  *  S  S  D  N  V  C  N  C  S  I  *  *  V  F  E  *  D  K  *  *  S  G  A  E  S  *  G  *  W  C  T  Y  N  V  Q  I  E  E  *  S  E  *  *  C  N  R  D  *  G  C  E  C  E  *  K  W  K  *  *  V  A  R  F  *  G  S  D  K  E  C  N  S  Y  K  E  N  C  V  Y  Y  H  E  A  E  *  Y  K  D  P  L  *  E  N  A  *  E  *  C  *  V  W  F  S  R  *  T  V  W  W  I  H  E  L  C  T  </second_frame>
            <third_frame>   K  D  N  W  W  W  S  K  G  R  K  L  R  W  E  P  I  V  Q  A  Q  E  I  G  V  L  L  L  Q  L  G  I  V  M  F  V  M  R  L  L  R  P  G  L  P  L  P  G  S  D  P  R  A  P  T  M  F  V  T  V  P  Y  S  E  F  L  S  K  I  N  S  N  Q  V  Q  K  V  E  V  D  G  V  H  I  M  F  K  L  K  S  E  V  S  S  S  V  I  E  T  E  V  V  N  V  N  E  N  G  N  S  K  L  Q  D  S  E  A  V  I  R  S  V  T  P  T  K  K  I  V  Y  T  T  T  R  P  S  D  I  K  T  P  Y  E  K  M  L  E  N  D  V  E  F  G  S  P  D  K  R  S  G  G  F  M  N  S  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60004" stop="59504"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDNWWWSKGRKLRWEPIVQAQEIGVLLLQLGIVMFVMRLLRPGLPLPGSDPRAPTMFVTVPYSEFLSKINSNQVQKVEVDGVHIMFKLKSEVSSSVIETEVVNVNENGNSKLQDSEAVIRSVTPTKKIVYTTTRPSDIKTPYEKMLENDVEFGSPDKRSGGFMNSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="65662" PGL_stop="66904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65662" e_stop="65748"/>
            <exon e_start="65882" e_stop="65947"/>
            <exon e_start="66287" e_stop="66472"/>
            <exon e_start="66627" e_stop="66713"/>
            <exon e_start="66791" e_stop="66904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65662" e_stop="65748" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65749" i_stop="65881" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65882" e_stop="65947" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65948" i_stop="66286" i_length="339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66287" e_stop="66472" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66473" i_stop="66626" i_length="154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66627" e_stop="66713" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.882" acc_prob="0.992">
            <gDNA_intron_boundary i_start="66714" i_stop="66790" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="66791" e_stop="66904" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65662" stop="65748"/>
              <exon start="65882" stop="65947"/>
              <exon start="66287" stop="66472"/>
              <exon start="66627" stop="66713"/>
              <exon start="66791" stop="66904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAGGCTAAGGAGGAGCTAGAAGAAATTGTG : GAATTTCTTAGAAATCCAGATAAGTATGTACGGCTTGGTGCACGTCCTCCTCGTGGTGTTCTACTG : GTTGGTCTCCCCGGGACAGGAAAGACACTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGTGAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGGGCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAG : ATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTACTCACT : GAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAATCGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG</gDNA_template>
            <first_frame> T  K  V  S  E  L  G  E  T  I  T  F  A  D  V  A  G  V  D  E  A  K  E  E  L  E  E  I  V  :  E  F  L  R  N  P  D  K  Y  V  R  L  G  A  R  P  P  R  G  V  L  L  :  V  G  L  P  G  T  G  K  T  L  L  A  K  A  V  A  G  E  A  E  V  P  F  I  S  C  S  A  S  E  F  V  E  L  Y  V  G  M  G  A  S  R  V  R  D  L  F  A  R  A  K  K  E  A  P  S  I  I  F  I  D  E  :  I  D  A  V  A  K  S  R  D  G  K  F  R  I  V  S  N  D  E  R  E  Q  T  L  N  Q  L  L  T  :  E  M  D  G  F  D  S  N  S  A  V  I  V  L  G  A  T  N  R  S  D  V  L  D  P  A  L  R  R  P  G  R  F  D  R  V  V  M </first_frame>
            <second_frame>  Q  K  C  L  N  *  G  K  L  S  H  L  L  M  L  Q  A  L  T  R  L  R  R  S  *  K  K  L  W :   N  F  L  E  I  Q  I  S  M  Y  G  L  V  H  V  L  L  V  V  F  Y  W :   L  V  S  P  G  Q  E  R  H  F  *  Q  R  L  L  L  G  K  L  R  F  L  L  S  V  V  L  Q  V  S  L  *  N  C  M  *  E  W  E  H  H  A  S  V  T  C  L  H  G  Q  R  R  R  H  L  Q  *  F  L  S  M  R :   *  M  L  W  Q  K  A  V  M  E  N  S  A  L  *  A  M  M  K  E  S  R  H  *  T  N  Y  S  L :   R  W  T  D  L  T  V  I  L  L  *  L  F  L  E  Q  Q  I  A  L  M  S  *  T  L  L  F  A  D  L  G  D  L  T  V  L  *   </second_frame>
            <third_frame>   K  S  V  *  T  R  G  N  Y  H  I  C  *  C  C  R  R  *  R  G  *  G  G  A  R  R  N  C   : G  I  S  *  K  S  R  *  V  C  T  A  W  C  T  S  S  S  W  C  S  T   : G  W  S  P  R  D  R  K  D  T  S  S  K  G  C  C  W  G  S  *  G  S  F  Y  Q  L  F  C  K  *  V  C  R  I  V  C  R  N  G  S  I  T  R  P  *  P  V  C  T  G  K  E  G  G  T  F  N  N  F  Y  R  *   : D  R  C  C  G  K  K  P  *  W  K  I  P  H  C  K  Q  *  *  K  R  A  D  I  E  P  T  T  H   : *  D  G  R  I  *  Q  *  F  C  C  N  C  S  W  S  N  K  S  L  *  C  L  R  P  C  S  S  P  T  W  E  I  *  P  C  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65662" stop="65748"/>
                    <exon start="65882" stop="65947"/>
                    <exon start="66287" stop="66472"/>
                    <exon start="66627" stop="66713"/>
                    <exon start="66791" stop="66904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKVSELGETITFADVAGVDEAKEELEEIVEFLRNPDKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68760" PGL_stop="71986"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68760" e_stop="68936"/>
            <exon e_start="70113" e_stop="70143"/>
            <exon e_start="70267" e_stop="70554"/>
            <exon e_start="70653" e_stop="70838"/>
            <exon e_start="70954" e_stop="71079"/>
            <exon e_start="71274" e_stop="71408"/>
            <exon e_start="71504" e_stop="71623"/>
            <exon e_start="71749" e_stop="71866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
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              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70705" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70797" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70959" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70964" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70971" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71031" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71393" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG : GTGTGGACACTGTAAGAGTCTTGCTCCTGAG : TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG : GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG : TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG : GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</gDNA_template>
            <first_frame> C  S  D  K  N  G  K  E  W  H  F  G  N  C  F  S  S  C  C  S  C  S  L  W  C  F  C  *  G  E  R  I  C  V  D  F  G  P  F  *  P  H  *  D  C  C  *  A  Q  L  H  C  C  *  I  L  C  T  L  :  V  W  T  L  *  E  S  C  S  *   : V  *  K  S  C  L  R  A  E  *  S  *  P  S  N  C  S  S  *  V  *  C  K  *  *  S  Q  *  R  T  F  K  T  V  R  D  P  G  F  P  N  Y  *  D  I  E  R  W  R  K  E  S  S  R  L  *  R  S  S  *  S  S  W  Y  C  I  L  L  E  E  T  S  G  S  C  I  C  *  N  Q  V  E  G  R  C  H  K  P  Y  *  *  E  K  Y  L  C   : C  W  Y  I  S  R  P  L  R  R  E  I  R  E  L  F  N  A  S  *  K  T  A  R  R  V  R  F  C  S  H  C  *  C  *  T  P  P  S  G  W  T  S  Q  Q  A  H  S  S  S  S  K  A  I  *  *  T  L  C  *  F  *   : G  L  *  C  R  C  N  G  E  V  H  L  R  I  *  Y  S  C  C  Y  Y  F  *  Q  *  P  K  Q  P  S  L  C  *  Q  V  L  R  R  H  Q  R  Q   : G  I  A  I  C  E  L  *  L  *  I  *  C  F  *  V  Q  V  Q  R  C  C  C  D  L  Q  R  G  W  G  E  L  S  L  G  *  C  *  G  W  S  R  C  F  *   : V  L  R  T  E  A  G  T  G  T  C  D  H  H  N  G  R  *  *  T  K  V  Y  *  G  P  C  G  T  *  C  H  C  C  L  L  E  G  L  Q   : G  R  K  T  E  A  T  C  E  V  R  A  H  P  *  S  Q  *  R  T  C  *  G  G  C  *  G  Y  P  P  G  Y  G  L  Q  I  G  K  K   </first_frame>
            <second_frame>  V  Q  T  K  M  A  K  S  G  I  L  V  I  V  S  A  L  V  V  L  A  V  C  G  V  F  A  E  E  N  E  Y  V  L  T  L  D  H  S  N  L  T  E  T  V  A  K  H  N  F  I  V  V  E  F  Y  A  P  W :   C  G  H  C  K  S  L  A  P  E  :  Y  E  K  A  A  S  E  L  S  S  H  D  P  P  I  V  L  A  K  Y  D  A  N  D  E  A  N  R  E  L  S  K  Q  Y  E  I  Q  G  F  P  T  I  K  I  L  R  D  G  G  K  K  V  Q  D  Y  N  G  P  R  E  A  A  G  I  V  S  Y  L  K  K  Q  V  G  P  A  S  A  E  I  K  S  K  E  D  A  T  N  L  I  D  E  K  S  I  F  V  :  V  G  I  F  P  D  P  S  G  E  K  F  E  N  Y  L  T  L  A  E  K  L  R  G  E  F  D  F  A  H  T  V  D  A  K  H  L  P  R  G  G  P  V  N  K  P  T  L  R  L  L  K  P  F  D  E  L  F  V  D  F  E  :  D  F  D  V  D  A  M  E  K  F  I  S  E  S  S  I  P  V  V  T  I  F  D  N  D  P  N  N  H  P  Y  V  N  K  F  F  E  G  T  N  A  K  :  A  L  L  F  V  N  F  S  S  E  F  D  A  F  K  S  K  Y  N  D  V  A  V  I  Y  K  G  D  G  V  S  F  L  L  G  D  V  E  A  G  Q  G  A  F  E  :  Y  F  G  L  K  P  E  Q  A  P  V  I  I  I  M  D  A  D  E  Q  K  Y  I  K  D  H  V  E  P  D  A  I  A  A  Y  L  K  D  Y  K  :  E  G  K  L  K  P  H  V  K  S  E  P  I  P  E  V  N  D  E  P  V  K  V  V  V  R  D  T  L  Q  D  M  V  Y  K  S  G  K  N  </second_frame>
            <third_frame>   F  R  Q  K  W  Q  R  V  A  F  W  *  L  F  Q  L  L  L  F  L  Q  F  V  V  F  L  L  R  R  T  N  M  C  *  L  W  T  I  L  T  S  L  R  L  L  L  S  T  T  S  L  L  L  N  S  M  H  L   : G  V  D  T  V  R  V  L  L  L  S :   M  K  K  L  P  Q  S  *  V  V  M  T  L  Q  L  F  *  L  S  M  M  Q  M  M  K  P  I  E  N  F  Q  N  S  T  R  S  R  V  S  Q  L  L  R  Y  *  E  M  E  E  R  K  F  K  T  I  T  V  L  V  K  Q  L  V  L  Y  P  T  *  R  N  K  W  V  L  H  L  L  K  S  S  R  R  K  M  P  Q  T  L  L  M  R  K  V  S  L  L :   L  V  Y  F  Q  T  P  P  E  R  N  S  R  T  I  *  R  *  L  K  N  C  E  A  S  S  I  L  L  T  L  L  M  L  N  T  S  L  G  V  D  Q  S  T  S  P  L  F  V  F  *  S  H  L  M  N  S  L  L  I  L  R :   T  L  M  S  M  Q  W  R  S  S  S  Q  N  L  V  F  L  L  L  L  F  L  T  M  T  Q  T  T  I  L  M  L  T  S  S  S  K  A  P  T  P  R :   H  C  Y  L  *  T  L  A  L  N  L  M  L  L  S  P  S  T  T  M  L  L  *  F  T  K  G  M  G  *  A  F  S  W  V  M  L  R  L  V  K  V  L  L  S :   T  S  D  *  S  R  N  R  H  L  *  S  S  *  W  T  L  M  N  K  S  I  L  R  T  M  W  N  L  M  P  L  L  L  T  *  R  I  T  R :   K  E  N  *  S  H  M  *  S  Q  S  P  S  L  K  S  M  T  N  L  L  R  W  L  L  G  I  P  S  R  I  W  F  T  N  R  E  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68761" stop="68936"/>
                    <exon start="70113" stop="70143"/>
                    <exon start="70267" stop="70554"/>
                    <exon start="70653" stop="70838"/>
                    <exon start="70954" stop="71079"/>
                    <exon start="71274" stop="71408"/>
                    <exon start="71504" stop="71623"/>
                    <exon start="71749" stop="71865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQTKMAKSGILVIVSALVVLAVCGVFAEENEYVLTLDHSNLTETVAKHNFIVVEFYAPWCGHCKSLAPEYEKAASELSSHDPPIVLAKYDANDEANRELSKQYEIQGFPTIKILRDGGKKVQDYNGPREAAGIVSYLKKQVGPASAEIKSKEDATNLIDEKSIFVVGIFPDPSGEKFENYLTLAEKLRGEFDFAHTVDAKHLPRGGPVNKPTLRLLKPFDELFVDFEDFDVDAMEKFISESSIPVVTIFDNDPNNHPYVNKFFEGTNAKALLFVNFSSEFDAFKSKYNDVAVIYKGDGVSFLLGDVEAGQGAFEYFGLKPEQAPVIIIMDADEQKYIKDHVEPDAIAAYLKDYKEGKLKPHVKSEPIPEVNDEPVKVVVRDTLQDMVYKSGKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70240" e_stop="70554"/>
            <exon e_start="70653" e_stop="70838"/>
            <exon e_start="70954" e_stop="71079"/>
            <exon e_start="71274" e_stop="71408"/>
            <exon e_start="71504" e_stop="71623"/>
            <exon e_start="71749" e_stop="71866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70240" e_stop="70554" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70653" e_stop="70838" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70954" e_stop="71079" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.965">
            <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71274" e_stop="71408" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.858">
            <gDNA_intron_boundary i_start="71409" i_stop="71503" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71504" e_stop="71623" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71624" i_stop="71748" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71749" e_stop="71866" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70240" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70240" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="70962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70243" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70243" stop="70468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70271" stop="70554"/>
              <exon start="70653" stop="70834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294729" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70271" stop="70554"/>
              <exon start="70653" stop="70834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70271" stop="70554"/>
              <exon start="70653" stop="70832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70288" stop="70518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70345" stop="70554"/>
              <exon start="70653" stop="70676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70352" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70385" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70386" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70417" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70417" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70422" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70474" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70478" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70492" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70496" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70501" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70506" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70522" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70522" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70533" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70539" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70539" stop="70554"/>
              <exon start="70653" stop="70838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70549" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70549" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70660" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70667" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70684" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70697" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70705" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70705" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70797" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70959" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70964" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70971" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71031" stop="71079"/>
              <exon start="71274" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71393" stop="71408"/>
              <exon start="71504" stop="71623"/>
              <exon start="71749" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG : GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG : TACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG : GAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG</gDNA_template>
            <first_frame> L  M  L  N  Y  V  S  F  Q  Y  E  K  A  A  S  E  L  S  S  H  D  P  P  I  V  L  A  K  Y  D  A  N  D  E  A  N  R  E  L  S  K  Q  Y  E  I  Q  G  F  P  T  I  K  I  L  R  D  G  G  K  K  V  Q  D  Y  N  G  P  R  E  A  A  G  I  V  S  Y  L  K  K  Q  V  G  P  A  S  A  E  I  K  S  K  E  D  A  T  N  L  I  D  E  K  S  I  F  V  :  V  G  I  F  P  D  P  S  G  E  K  F  E  N  Y  L  T  L  A  E  K  L  R  G  E  F  D  F  A  H  T  V  D  A  K  H  L  P  R  G  G  P  V  N  K  P  T  L  R  L  L  K  P  F  D  E  L  F  V  D  F  E  :  D  F  D  V  D  A  M  E  K  F  I  S  E  S  S  I  P  V  V  T  I  F  D  N  D  P  N  N  H  P  Y  V  N  K  F  F  E  G  T  N  A  K  :  A  L  L  F  V  N  F  S  S  E  F  D  A  F  K  S  K  Y  N  D  V  A  V  I  Y  K  G  D  G  V  S  F  L  L  G  D  V  E  A  G  Q  G  A  F  E  :  Y  F  G  L  K  P  E  Q  A  P  V  I  I  I  M  D  A  D  E  Q  K  Y  I  K  D  H  V  E  P  D  A  I  A  A  Y  L  K  D  Y  K  :  E  G  K  L  K  P  H  V  K  S  E  P  I  P  E  V  N  D  E  P  V  K  V  V  V  R  D  T  L  Q  D  M  V  Y  K  S  G  K  N  </first_frame>
            <second_frame>  *  C  *  I  M  F  L  S  S  M  K  K  L  P  Q  S  *  V  V  M  T  L  Q  L  F  *  L  S  M  M  Q  M  M  K  P  I  E  N  F  Q  N  S  T  R  S  R  V  S  Q  L  L  R  Y  *  E  M  E  E  R  K  F  K  T  I  T  V  L  V  K  Q  L  V  L  Y  P  T  *  R  N  K  W  V  L  H  L  L  K  S  S  R  R  K  M  P  Q  T  L  L  M  R  K  V  S  L  L :   L  V  Y  F  Q  T  P  P  E  R  N  S  R  T  I  *  R  *  L  K  N  C  E  A  S  S  I  L  L  T  L  L  M  L  N  T  S  L  G  V  D  Q  S  T  S  P  L  F  V  F  *  S  H  L  M  N  S  L  L  I  L  R :   T  L  M  S  M  Q  W  R  S  S  S  Q  N  L  V  F  L  L  L  L  F  L  T  M  T  Q  T  T  I  L  M  L  T  S  S  S  K  A  P  T  P  R :   H  C  Y  L  *  T  L  A  L  N  L  M  L  L  S  P  S  T  T  M  L  L  *  F  T  K  G  M  G  *  A  F  S  W  V  M  L  R  L  V  K  V  L  L  S :   T  S  D  *  S  R  N  R  H  L  *  S  S  *  W  T  L  M  N  K  S  I  L  R  T  M  W  N  L  M  P  L  L  L  T  *  R  I  T  R :   K  E  N  *  S  H  M  *  S  Q  S  P  S  L  K  S  M  T  N  L  L  R  W  L  L  G  I  P  S  R  I  W  F  T  N  R  E  K  M </second_frame>
            <third_frame>   N  V  K  L  C  F  F  P  V  *  K  S  C  L  R  A  E  *  S  *  P  S  N  C  S  S  *  V  *  C  K  *  *  S  Q  *  R  T  F  K  T  V  R  D  P  G  F  P  N  Y  *  D  I  E  R  W  R  K  E  S  S  R  L  *  R  S  S  *  S  S  W  Y  C  I  L  L  E  E  T  S  G  S  C  I  C  *  N  Q  V  E  G  R  C  H  K  P  Y  *  *  E  K  Y  L  C   : C  W  Y  I  S  R  P  L  R  R  E  I  R  E  L  F  N  A  S  *  K  T  A  R  R  V  R  F  C  S  H  C  *  C  *  T  P  P  S  G  W  T  S  Q  Q  A  H  S  S  S  S  K  A  I  *  *  T  L  C  *  F  *   : G  L  *  C  R  C  N  G  E  V  H  L  R  I  *  Y  S  C  C  Y  Y  F  *  Q  *  P  K  Q  P  S  L  C  *  Q  V  L  R  R  H  Q  R  Q   : G  I  A  I  C  E  L  *  L  *  I  *  C  F  *  V  Q  V  Q  R  C  C  C  D  L  Q  R  G  W  G  E  L  S  L  G  *  C  *  G  W  S  R  C  F  *   : V  L  R  T  E  A  G  T  G  T  C  D  H  H  N  G  R  *  *  T  K  V  Y  *  G  P  C  G  T  *  C  H  C  C  L  L  E  G  L  Q   : G  R  K  T  E  A  T  C  E  V  R  A  H  P  *  S  Q  *  R  T  C  *  G  G  C  *  G  Y  P  P  G  Y  G  L  Q  I  G  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70240" stop="70554"/>
                    <exon start="70653" stop="70838"/>
                    <exon start="70954" stop="71079"/>
                    <exon start="71274" stop="71408"/>
                    <exon start="71504" stop="71623"/>
                    <exon start="71749" stop="71865"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMLNYVSFQYEKAASELSSHDPPIVLAKYDANDEANRELSKQYEIQGFPTIKILRDGGKKVQDYNGPREAAGIVSYLKKQVGPASAEIKSKEDATNLIDEKSIFVVGIFPDPSGEKFENYLTLAEKLRGEFDFAHTVDAKHLPRGGPVNKPTLRLLKPFDELFVDFEDFDVDAMEKFISESSIPVVTIFDNDPNNHPYVNKFFEGTNAKALLFVNFSSEFDAFKSKYNDVAVIYKGDGVSFLLGDVEAGQGAFEYFGLKPEQAPVIIIMDADEQKYIKDHVEPDAIAAYLKDYKEGKLKPHVKSEPIPEVNDEPVKVVVRDTLQDMVYKSGKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71492" e_stop="71986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="71492" e_stop="71986" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71492" stop="71986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCATTTCTTTACTAGTGTGT</gDNA_template>
            <first_frame> L  E  L  Q  Y  F  G  L  K  P  E  Q  A  P  V  I  I  I  M  D  A  D  E  Q  K  Y  I  K  D  H  V  E  P  D  A  I  A  A  Y  L  K  D  Y  K  V  M  H  P  L  L  F  L  G  Y  I  L  E  *  K  R  C  *  L  *  T  I  F  C  T  E  G  K  A  Y  *  P  F  S  S  N  F  P  H  C  Y  R  K  E  N  *  S  H  M  *  S  Q  S  P  S  L  K  S  M  T  N  L  L  R  W  L  L  G  I  P  S  R  I  W  F  T  N  R  E  K  M  V  R  V  C  Q  Y  F  N  L  Y  S  M  S  W  L  R  K  S  C  F  F  V  V  P  F  R  S  P  S  L  V  F  T  C  I  S  L  L  V  C </first_frame>
            <second_frame>  W  N  C  S  T  S  D  *  S  R  N  R  H  L  *  S  S  *  W  T  L  M  N  K  S  I  L  R  T  M  W  N  L  M  P  L  L  L  T  *  R  I  T  R  *  C  I  L  F  F  F  L  D  I  F  W  N  E  S  V  V  N  C  E  Q  Y  S  A  R  K  E  R  L  T  N  L  F  P  L  I  F  H  I  V  T  G  R  K  T  E  A  T  C  E  V  R  A  H  P  *  S  Q  *  R  T  C  *  G  G  C  *  G  Y  P  P  G  Y  G  L  Q  I  G  K  K  W  C  V  S  V  N  I  L  I  F  I  R  C  L  G  *  E  R  V  V  S  L  L  Y  H  F  V  L  P  L  W  C  L  L  A  F  L  Y  *  C   </second_frame>
            <third_frame>   G  I  A  V  L  R  T  E  A  G  T  G  T  C  D  H  H  N  G  R  *  *  T  K  V  Y  *  G  P  C  G  T  *  C  H  C  C  L  L  E  G  L  Q  G  D  A  S  S  S  F  S  W  I  Y  F  G  M  K  A  L  L  I  V  N  N  I  L  H  G  R  K  G  L  L  T  F  F  L  *  F  S  T  L  L  Q  E  G  K  L  K  P  H  V  K  S  E  P  I  P  E  V  N  D  E  P  V  K  V  V  V  R  D  T  L  Q  D  M  V  Y  K  S  G  K  N  G  A  C  L  S  I  F  *  S  L  F  D  V  L  V  K  K  E  L  F  L  C  C  T  I  S  F  S  L  F  G  V  Y  L  H  F  F  T  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71774" stop="71986"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQSPSLKSMTNLLRWLLGIPSRIWFTNREKMVRVCQYFNLYSMSWLRKSCFFVVPFRSPSLVFTCISLLVC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="88788" PGL_stop="87060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88788" e_stop="87060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="88788" e_stop="87060" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88788" stop="88078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88212" stop="87575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88172" stop="87545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88172" stop="87597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88122" stop="87570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87957" stop="87194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87930" stop="87360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87626" stop="87228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87440" stop="87060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGTCTTCACTAGAAAAATGTGAAGTTTTTGGACCGATAATCCAAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTAACATTTATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGTAGTTCATGAAAAACTTGAAATGCGTCTAATCGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTAAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGCCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACAGTCGGGGTCTTAATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCATGGTAAGGTTTTTAAC</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  C  L  H  *  K  N  V  K  F  L  D  R  *  S  K  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  T  F  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  S  D  I  S  *  I  W  *  F  M  K  N  L  K  C  V  *  S  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  N  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  A  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  S  R  G  L  N  L  *  *  *  L  C  M  L  M  V  *  T  S  L  A  L  I  K  S  F  *  K  L  L  S  V  *  K  K  N  L  K  *  K  I  S  A  R  Q  N  F  I  L  A  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  I  L  Q  *  V  Y  *  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  C  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  H  G  I  Y  Q  I  L  I  K  L  D  H  K  Q  D  I  C  L  H  V  E  T  *  Q  Y  L  G  D  Q  *  S  K  R  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  V  S  A  S  G  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  F  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  G  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  V  F  T  R  K  M  *  S  F  W  T  D  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  G  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  *  H  L  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  Q  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  R  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  T  S  E  I  S  V  W  I  E  T  I  R  K  D  V  V  Q  S  P  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  L  I  C  N  N  S  C  V  C  *  W  F  E  H  H  W  H  S  *  R  A  F  K  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  P  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  A  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  S  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  I  S  I  S  S  R  D  H  A  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  T  V  F  I  R  S  S  *  S  L  I  T  N  R  I  F  V  Y  M  W  R  H  D  N  I  L  A  I  N  E  A  N  V  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  *  V  R  L  V  E  I  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  V  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  R  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  G  F  H  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  S  S  L  E  K  C  E  V  F  G  P  I  I  Q  T  P  E  G  I  K  P  V  G  Y  K  W  V  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  N  I  Y  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  V  V  H  E  K  L  E  M  R  L  I  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  K  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  Q  S  G  S  *  F  V  I  I  V  V  Y  V  D  G  L  N  I  I  G  T  H  K  E  L  L  K  A  V  E  C  L  K  K  E  F  E  M  K  D  L  G  K  T  K  F  Y  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  Y  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  F  R  Y  L  R  G  T  M  H  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  R  Y  L  S  D  P  H  K  A  *  S  Q  T  G  Y  L  F  T  C  G  D  M  T  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  A  S  R  E  C  V  W  L  R  S  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  V  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  Y  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  G  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  W  V  F  M  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88786" stop="88172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELSSLEKCEVFGPIIQTPEGIKPVGYKWVFVRKRNEKGEVMRYKARLVAQGFSQRPNIYYMETYSPVVDAITFRYLINLVVHEKLEMRLIDVVTAYLYGSLDHNIFMKIPKAFKVPEAYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKQSGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88171" stop="87602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVIIVVYVDGLNIIGTHKELLKAVECLKKEFEMKDLGKTKFYLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDIYFAVSLLARFSSSPTKRHWNGVKHIFRYLRGTMHMGLFYSNESKSELIGYADARYLSDPHKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87601" stop="87152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQTGYLFTCGDMTISWRSMKQTLVATSSNHAEIIAIHEASRECVWLRSMTHHIQKMCGFSLKKNIPTTMYEDNAACIVQLKGGYIKGDRTKHISPKFFFTYDLQQNGEIEVQQIRSGDNLADLFTKALPTSTFEKLRYKIGMRRLRDIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="90644" PGL_stop="90099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90644" e_stop="90099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="90644" e_stop="90099" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90644" stop="90099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90534" stop="90166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGACCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  D  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  R  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  Y  L  A  *  P  V  G  P  S  Q  I  *  Y  D  A  Q  N  H  *  E  F  T  W  A  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  T  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  S  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  Q  L  G  H  P  R  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  H  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  S  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  L  F  G  M  T  S  W  A  I  P  D  L  I  *  C  A  K  S  L  R  I  H  M  G  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90643" stop="90101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETTNEGKVEYLYITTINVEKKIVHEKSPAFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDQLGHPRFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="91942" PGL_stop="91179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91942" e_stop="91179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="91942" e_stop="91179" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91942" stop="91179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACCGTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGTAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAACAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGTATGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  N  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  K  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  Y  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  Y  P  L  E  *  W  T  D  L  K  G  R  Y  D  H  R  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  W  F  Q  D  F  K  T  V  I  E  Y  N  R  V  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  N  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  *  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  V  W  G  R  G   </first_frame>
            <second_frame>  T  R  Y  Q  H  E  I  A  T  C  K  G  T  I  *  I  F  L  F  N  S  H  I  L  S  *  F  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  K  K  H  P  V  K  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  N  I  H  L  N  S  G  L  I  *  R  G  D  M  T  T  E  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  E  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  F  M  P  R  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  F  W  W  L  N  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  D  I  I  M  Y  G  D  V  A  </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  R  S  I  Q  S  R  *  G  E  G  Y  D  F  P  S  L  S  S  *  *  G  P  E  D  *  I  S  D  G  E  I  S  T  *  I  V  D  *  F  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  S  L  *  V  D  A  F  M  V  S  R  F  *  D  R  N  *  I  Q  Q  S  C  I  Q  D  N  L  P  V  E  I  M  W  G  D  Y  K  R  *  E  H  V  G  K  D  T  Y  Y  F  S  C  L  E  C  D  I  A  V  A  I  S  *  K  G  F  S  E  I  F  *  T  N  L  M  S  F  G  G  *  T  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  I  *  *  C  M  G  T  W  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91882" stop="91622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYSLIIFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLAAKGLDATITQGKEASSQDKAKAMIFLRYHLDEGLKIEYLTVKYPLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91621" stop="91391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTDLKGRYDHRKATVLPRARYEWMHLWFQDFKTVIEYNRVVFRITSQLKLCGETIKDENMLEKTLTTFHASNVILQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91390" stop="91181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNVWGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="117394" PGL_stop="120610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117394" e_stop="117827"/>
            <exon e_start="119014" e_stop="119106"/>
            <exon e_start="119835" e_stop="119969"/>
            <exon e_start="120300" e_stop="120610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="117394" e_stop="117827" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119014" e_stop="119106" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119835" e_stop="119969" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="120300" e_stop="120610" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117394" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117428" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117436" stop="117827"/>
              <exon start="119014" stop="119099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117480" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117515" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117516" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117516" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117532" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117574" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117579" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117583" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117599" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117652" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117652" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG : ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG : GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTCCTGT</gDNA_template>
            <first_frame> Y  L  P  P  T  S  K  T  L  K  I  S  L  K  E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R :   Q  E  Q  D  L  S  K  W  R  I  M  R  T  L  L  I  *  E  L  I  I  L  L  I  Q  A  M  F  T  R  G  I  Q  L  L  M  I  G  F  L  L  L  L  M  R :   L  I  L  S  Q  E  N  H  T  E  V  I  T  E  I  E  S  L  I  K  T  V  S  A  Y  F  V  F  L  *  S  L  A  S  T  C  V  S  F  V  W  L  Y  L  N  N  M  L  Y  E  L  F  Q  T  I  L  M  K  N  L  Y  *  P  N  I  S  *  G  G  V  M  E  W  F  E  *  P  K  P  L  T  R  G  L  E  F  K  L  L  *  T  K  N  S  I  I  K  D  I  L  F  F  L  </first_frame>
            <second_frame>  T  Y  H  Q  L  P  K  L  S  K  Y  L  *  R  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H   : D  R  N  R  I  Y  Q  S  G  E  *  *  E  H  F  *  Y  R  S  *  L  Y  Y  *  S  K  P  C  L  Q  G  E  S  S  Y  *  *  L  D  S  F  C  C  *  *   : G  *  F  Y  L  R  K  T  T  Q  K  *  *  L  K  L  S  L  *  *  R  Q  Y  L  L  I  L  Y  F  C  E  A  W  L  Q  L  V  S  L  L  F  G  C  I  *  I  T  C  Y  M  N  Y  F  K  R  F  *  *  R  I  Y  I  S  Q  I  S  A  K  G  V  *  W  N  G  S  N  N  L  N  H  *  P  E  V  S  N  L  N  C  C  E  R  K  I  A  L  *  R  I  S  F  S  S  C </second_frame>
            <third_frame>   P  T  T  N  F  Q  N  S  Q  N  I  F  E  G  K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  :  T  G  T  G  F  I  K  V  E  N  N  E  N  T  F  N  I  G  A  D  Y  T  T  D  P  S  H  V  Y  K  G  N  P  A  T  N  D  W  I  P  S  A  V  D  E  :  V  N  F  I  S  G  K  P  H  R  S  D  N  *  N  *  V  F  D  K  D  S  I  C  L  F  C  I  S  V  K  L  G  F  N  L  C  L  F  C  L  V  V  F  E  *  H  A  I  *  I  I  S  N  D  F  N  E  E  F  I  L  A  K  Y  Q  L  R  G  C  D  G  M  V  R  I  T  *  T  I  N  Q  R  S  R  I  *  T  V  V  N  E  K  *  H  Y  K  G  Y  P  F  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117510" stop="117827"/>
                    <exon start="119014" stop="119106"/>
                    <exon start="119835" stop="119969"/>
                    <exon start="120300" stop="120341"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTTGTGFIKVENNENTFNIGADYTTDPSHVYKGNPATNDWIPSAVDEVNFISGKPHRSDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117436" e_stop="117827"/>
            <exon e_start="119014" e_stop="119190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117436" e_stop="117827" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="119014" e_stop="119190" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117436" stop="117827"/>
              <exon start="119014" stop="119099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117548" stop="117827"/>
              <exon start="119014" stop="119190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTT</gDNA_template>
            <first_frame> E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R  L  L  L  S  L  T  L  I  T  L  L  L  P  K  K  S  N  Y  S  R  T  S  L  *  R  H  R   </first_frame>
            <second_frame>  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H  G  Y  Y  S  H  S  L  L  *  H  S  Y  Y  L  K  N  P  I  T  V  E  P  L  Y  D  D  I  V  </second_frame>
            <third_frame>   K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  V  T  T  L  T  H  S  Y  N  T  L  I  T  *  K  I  Q  L  Q  S  N  L  S  M  T  T  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117510" stop="117827"/>
                    <exon start="119014" stop="119148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTVTTLTHSYNTLIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="120767" PGL_stop="121274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120767" e_stop="121274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="120767" e_stop="121274" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120767" stop="121274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCAAGGTCTTGTGTAACAACTTTAAGACAAAACACATAGATGCAGAACTTCAAAATCATACCTAAATTTTAAGAGAATGTCATACAGTAAATCCTTTAAGTTTATGTATCTCTCTGTGCTAATCATGGTGTAATCTACTGTCGATTGCTAAATGTACATTTGAAAGACTTGAATTTCTGTACAAATTAGCCAAATTGTAGGGTAGCCTTGCTCAAAGTCCACACCTTGGCGAACATATTCTAGTGTACAACATGTGTATCGTCAGGTCCTTTAGAATTGCAAATGAAATCAAGGCTTCCGGACCTAATCAAACTCCGGTAATATATAAGCTAGCTGCAAACACGATATCGCGCTTGATCACATTAGATGCAGTTTCCATTTTCTTGTACAGTGCAGAGTTGCCCATAATTGCAGCAGCATTTCTAAATTCACGACAAGTCTCGTCTAATCTAACAATAGTCCTCACTATAACACCTTCAGGGACATCTGTGAGTTCACATATCTC</gDNA_template>
            <first_frame> N  S  R  S  C  V  T  T  L  R  Q  N  T  *  M  Q  N  F  K  I  I  P  K  F  *  E  N  V  I  Q  *  I  L  *  V  Y  V  S  L  C  A  N  H  G  V  I  Y  C  R  L  L  N  V  H  L  K  D  L  N  F  C  T  N  *  P  N  C  R  V  A  L  L  K  V  H  T  L  A  N  I  F  *  C  T  T  C  V  S  S  G  P  L  E  L  Q  M  K  S  R  L  P  D  L  I  K  L  R  *  Y  I  S  *  L  Q  T  R  Y  R  A  *  S  H  *  M  Q  F  P  F  S  C  T  V  Q  S  C  P  *  L  Q  Q  H  F  *  I  H  D  K  S  R  L  I  *  Q  *  S  S  L  *  H  L  Q  G  H  L  *  V  H  I  S  </first_frame>
            <second_frame>  T  Q  G  L  V  *  Q  L  *  D  K  T  H  R  C  R  T  S  K  S  Y  L  N  F  K  R  M  S  Y  S  K  S  F  K  F  M  Y  L  S  V  L  I  M  V  *  S  T  V  D  C  *  M  Y  I  *  K  T  *  I  S  V  Q  I  S  Q  I  V  G  *  P  C  S  K  S  T  P  W  R  T  Y  S  S  V  Q  H  V  Y  R  Q  V  L  *  N  C  K  *  N  Q  G  F  R  T  *  S  N  S  G  N  I  *  A  S  C  K  H  D  I  A  L  D  H  I  R  C  S  F  H  F  L  V  Q  C  R  V  A  H  N  C  S  S  I  S  K  F  T  T  S  L  V  *  S  N  N  S  P  H  Y  N  T  F  R  D  I  C  E  F  T  Y  L </second_frame>
            <third_frame>   L  K  V  L  C  N  N  F  K  T  K  H  I  D  A  E  L  Q  N  H  T  *  I  L  R  E  C  H  T  V  N  P  L  S  L  C  I  S  L  C  *  S  W  C  N  L  L  S  I  A  K  C  T  F  E  R  L  E  F  L  Y  K  L  A  K  L  *  G  S  L  A  Q  S  P  H  L  G  E  H  I  L  V  Y  N  M  C  I  V  R  S  F  R  I  A  N  E  I  K  A  S  G  P  N  Q  T  P  V  I  Y  K  L  A  A  N  T  I  S  R  L  I  T  L  D  A  V  S  I  F  L  Y  S  A  E  L  P  I  I  A  A  A  F  L  N  S  R  Q  V  S  S  N  L  T  I  V  L  T  I  T  P  S  G  T  S  V  S  S  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120970" stop="121272"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLAQSPHLGEHILVYNMCIVRSFRIANEIKASGPNQTPVIYKLAANTISRLITLDAVSIFLYSAELPIIAAAFLNSRQVSSNLTIVLTITPSGTSVSSHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="123351" PGL_stop="120807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122248" e_stop="121614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="122248" e_stop="121614" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122248" stop="121614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122248" stop="121820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGACTCATTTCTTATCAAGTTGTTTCTTCTTTATTATAGTGAATACACTTTTTAGAGGGAAACGAATTTTCTGGCCAGCTGCTAATTCTCTTATATTGTCAGTGTGTACTCTGCTTTTCCTTTATTGAAAGATTTTTTGAAAATGGGATTTGGTCAGATTTACGAATCAAGCATGTAGTGGTCTAAGACCTGGTTGCTGCTTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGGATGTCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTCAAAAAGTTACTGAACAACAGAGAATAGAGTTTTACACACTTCAGATCTTCCACAGAACATTTCTGTCAGTATTTGTGCCAACAAAGGCTGTTACTGTTTAAACGGTGTATGGCCAATTGGCTCTCTTTTACTTCTGAAGTCATGTCATCTCCTCCTTGCACTTGTCAATGTTGTCTACTTGTTTTTATTTGACTAGTGCAACTGTAGTTGTTGATTACGGTAATTTCATTCTTATAACTTCATTTGTACTTTTTCTTATTGTTTCAAGTCATTCTGATGTATTCTGTAGGTATTTTCTCATTAATTACCATGAGCTGTAACTTAACCCTGTTCTTTGATATTATAGTTTTTCTTT</gDNA_template>
            <first_frame> L  K  T  H  F  L  S  S  C  F  F  F  I  I  V  N  T  L  F  R  G  K  R  I  F  W  P  A  A  N  S  L  I  L  S  V  C  T  L  L  F  L  Y  *  K  I  F  *  K  W  D  L  V  R  F  T  N  Q  A  C  S  G  L  R  P  G  C  C  F  W  V  F  L  *  M  H  N  C  *  W  D  V  F  *  L  Q  N  I  Q  I  S  F  C  Q  K  V  T  E  Q  Q  R  I  E  F  Y  T  L  Q  I  F  H  R  T  F  L  S  V  F  V  P  T  K  A  V  T  V  *  T  V  Y  G  Q  L  A  L  F  Y  F  *  S  H  V  I  S  S  L  H  L  S  M  L  S  T  C  F  Y  L  T  S  A  T  V  V  V  D  Y  G  N  F  I  L  I  T  S  F  V  L  F  L  I  V  S  S  H  S  D  V  F  C  R  Y  F  L  I  N  Y  H  E  L  *  L  N  P  V  L  *  Y  Y  S  F  S   </first_frame>
            <second_frame>  S  R  L  I  S  Y  Q  V  V  S  S  L  L  *  *  I  H  F  L  E  G  N  E  F  S  G  Q  L  L  I  L  L  Y  C  Q  C  V  L  C  F  S  F  I  E  R  F  F  E  N  G  I  W  S  D  L  R  I  K  H  V  V  V  *  D  L  V  A  A  F  G  S  F  S  E  C  T  T  A  S  G  M  S  F  D  C  K  I  S  K  F  P  S  V  K  K  L  L  N  N  R  E  *  S  F  T  H  F  R  S  S  T  E  H  F  C  Q  Y  L  C  Q  Q  R  L  L  L  F  K  R  C  M  A  N  W  L  S  F  T  S  E  V  M  S  S  P  P  C  T  C  Q  C  C  L  L  V  F  I  *  L  V  Q  L  *  L  L  I  T  V  I  S  F  L  *  L  H  L  Y  F  F  L  L  F  Q  V  I  L  M  Y  S  V  G  I  F  S  L  I  T  M  S  C  N  L  T  L  F  F  D  I  I  V  F  L  </second_frame>
            <third_frame>   Q  D  S  F  L  I  K  L  F  L  L  Y  Y  S  E  Y  T  F  *  R  E  T  N  F  L  A  S  C  *  F  S  Y  I  V  S  V  Y  S  A  F  P  L  L  K  D  F  L  K  M  G  F  G  Q  I  Y  E  S  S  M  *  W  S  K  T  W  L  L  L  L  G  L  S  L  N  A  Q  L  L  V  G  C  L  L  T  A  K  Y  P  N  F  L  L  S  K  S  Y  *  T  T  E  N  R  V  L  H  T  S  D  L  P  Q  N  I  S  V  S  I  C  A  N  K  G  C  Y  C  L  N  G  V  W  P  I  G  S  L  L  L  L  K  S  C  H  L  L  L  A  L  V  N  V  V  Y  L  F  L  F  D  *  C  N  C  S  C  *  L  R  *  F  H  S  Y  N  F  I  C  T  F  S  Y  C  F  K  S  F  *  C  I  L  *  V  F  S  H  *  L  P  *  A  V  T  *  P  C  S  L  I  L  *  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0054K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123351" e_stop="123238"/>
            <exon e_start="121570" e_stop="121444"/>
            <exon e_start="121289" e_stop="120807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="0.947"/>
          <exon-intron don_prob="0.097" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="123351" e_stop="123238" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="123237" i_stop="121571" i_length="1667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121570" e_stop="121444" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.097" acc_prob="0.989">
            <gDNA_intron_boundary i_start="121443" i_stop="121290" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="121289" e_stop="120807" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123351" stop="123238"/>
              <exon start="121570" stop="121444"/>
              <exon start="121289" stop="120807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578306" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG : ATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAG : GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTATATATTACCGGAGTTTGATTAGGTCCGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAAACTTAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</gDNA_template>
            <first_frame> A  *  *  P  G  A  R  R  G  S  G  D  H  V  F  L  C  V  S  A  K  G  D  F  *  I  F  P  H  A  K  A  F  S  G  *  K  E  :  I  T  *  N  C  N  K  T  W  G  A  S  G  S  V  *  A  A  D  *  P  K  G  V  C  P  R  E  P  *  V  W  F  G  *  S  G  I  *  M  G  K   : G  D  P  I  C  *  D  M  *  T  H  R  C  P  *  R  C  Y  S  E  D  Y  C  *  I  R  R  D  L  S  *  I  *  K  C  C  C  N  Y  G  Q  L  C  T  V  Q  E  N  G  N  C  I  *  C  D  Q  A  R  Y  R  V  C  S  *  L  I  Y  Y  R  S  L  I  R  S  G  S  L  D  F  I  C  N  S  K  G  P  D  D  T  H  V  V  H  *  N  M  F  A  K  V  W  T  L  S  K  A  T  L  Q  F  G  *  F  V  Q  K  F  K  S  F  K  C  T  F  S  N  R  Q  *  I  T  P  *  L  A  Q  R  D  T  *  T  *  R  I  Y  C  M  T  F  S  *  N  L  G  M  I  L  K  F  C  I  </first_frame>
            <second_frame>  L  D  D  L  E  P  E  E  A  V  A  I  M  S  S  F  V  F  Q  Q  K  E  T  S  E  S  F  L  T  P  K  L  S  Q  A  K  K  R :   L  H  E  T  A  I  R  L  G  E  L  Q  A  Q  F  K  L  P  I  D  P  K  E  Y  A  Q  E  N  L  K  F  G  L  V  E  V  V  Y  E  W  A  K  :  G  T  P  F  A  E  I  C  E  L  T  D  V  P  E  G  V  I  V  R  T  I  V  R  L  D  E  T  C  R  E  F  R  N  A  A  A  I  M  G  N  S  A  L  Y  K  K  M  E  T  A  S  N  V  I  K  R  D  I  V  F  A  A  S  L  Y  I  T  G  V  *  L  G  P  E  A  L  I  S  F  A  I  L  K  D  L  T  I  H  M  L  Y  T  R  I  C  S  P  R  C  G  L  *  A  R  L  P  Y  N  L  A  N  L  Y  R  N  S  S  L  S  N  V  H  L  A  I  D  S  R  L  H  H  D  *  H  R  E  I  H  K  L  K  G  F  T  V  *  H  S  L  K  I  *  V  *  F  *  S  S  A  S </second_frame>
            <third_frame>   L  M  T  W  S  Q  K  R  Q  W  R  S  C  L  P  L  C  F  S  K  R  R  L  L  N  L  S  S  R  Q  S  F  L  R  L  K  R   : D  Y  M  K  L  Q  *  D  L  G  S  F  R  L  S  L  S  C  R  L  T  Q  R  S  M  P  K  R  T  L  S  L  V  W  L  K  W  Y  M  N  G  Q  R :   G  P  H  L  L  R  Y  V  N  S  Q  M  S  L  K  V  L  *  *  G  L  L  L  D  *  T  R  L  V  V  N  L  E  M  L  L  Q  L  W  A  T  L  H  C  T  R  K  W  K  L  H  L  M  *  S  S  A  I  S  C  L  Q  L  A  Y  I  L  P  E  F  D  *  V  R  K  P  *  F  H  L  Q  F  *  R  T  *  R  Y  T  C  C  T  L  E  Y  V  R  Q  G  V  D  F  E  Q  G  Y  P  T  I  W  L  I  C  T  E  I  Q  V  F  Q  M  Y  I  *  Q  S  T  V  D  Y  T  M  I  S  T  E  R  Y  I  N  L  K  D  L  L  Y  D  I  L  L  K  F  R  Y  D  F  E  V  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123350" stop="123238"/>
                    <exon start="121570" stop="121444"/>
                    <exon start="121289" stop="121077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLHETAIRLGELQAQFKLPIDPKEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="143929" PGL_stop="144545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143929" e_stop="144545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="143929" e_stop="144545" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143929" stop="144545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</gDNA_template>
            <first_frame> S  T  C  G  G  I  I  L  S  A  I  Q  H  *  A  S  L  N  H  *  Q  T  V  G  I  *  E  Y  S  R  L  V  V  I  R  W  M  V  F  C  L  H  L  L  V  I  S  Q  T  P  C  K  F  L  K  H  L  N  V  N  *  R  V  S  F  Q  N  K  L  L  I  L  L  D  *  Q  G  *  V  C  R  T  I  S  *  *  V  I  F  Q  K  Q  C  K  E  C  *  T  F  K  N  F  T  *  E  A  T  S  *  K  E  P  Y  Q  M  L  S  A  V  Y  S  I  L  V  H  *  N  C  Q  K  I  N  F  L  V  P  F  H  H  A  *  G  M  L  L  V  *  G  H  S  I  *  I  T  T  S  W  I  L  D  Y  L  Q  D  W  G  D  F  K  T  S  *  S  S  I  F  H  P  I  I  *  V  E  K  F  R  *  R  A  E  T  *  R  V  Q  H  *  L  I  C  Q  I  I  I  F   </first_frame>
            <second_frame>  Q  L  V  G  E  *  F  C  Q  R  F  N  I  E  L  P  *  I  I  D  K  L  *  E  S  K  S  T  H  A  W  W  *  S  V  G  W  C  F  A  C  I  C  W  *  F  L  K  L  L  A  N  F  *  S  I  *  M  *  T  E  G  C  H  F  K  T  N  Y  *  S  Y  W  I  D  K  D  E  S  V  E  Q  S  V  D  R  S  Y  S  K  N  S  A  R  N  A  E  P  S  R  T  L  P  R  K  Q  Q  V  R  R  S  H  T  R  C  Y  L  Q  F  T  V  S  W  C  I  R  I  V  R  K  S  I  F  *  F  R  S  T  M  L  R  E  C  Y  *  F  E  D  T  L  S  R  *  Q  Q  A  G  F  *  I  T  C  K  I  G  G  T  S  K  H  H  R  V  Q  Y  F  I  Q  L  F  E  W  R  N  S  A  R  E  R  K  L  E  G  C  N  T  D  *  S  V  K  *  L  F  F  </second_frame>
            <third_frame>   N  L  W  G  N  N  F  V  S  D  S  T  L  S  F  L  E  S  L  T  N  C  R  N  L  R  V  L  T  L  G  G  N  P  L  D  G  V  L  P  A  S  V  G  N  F  S  N  S  L  Q  I  F  E  A  S  K  C  K  L  K  G  V  I  S  K  Q  I  T  N  L  T  G  L  T  R  M  S  L  S  N  N  Q  L  I  G  H  I  P  K  T  V  Q  G  M  L  N  L  Q  E  L  Y  L  G  S  N  K  L  E  G  A  I  P  D  V  I  C  S  L  Q  Y  L  G  A  L  E  L  S  E  N  Q  F  S  S  S  V  P  P  C  L  G  N  V  T  S  L  R  T  L  Y  L  D  N  N  K  L  D  S  R  L  P  A  R  L  G  G  L  Q  N  I  I  E  F  N  I  S  S  N  Y  L  S  G  E  I  P  L  E  S  G  N  L  K  G  A  T  L  I  D  L  S  N  N  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143931" stop="144545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWGNNFVSDSTLSFLESLTNCRNLRVLTLGGNPLDGVLPASVGNFSNSLQIFEASKCKLKGVISKQITNLTGLTRMSLSNNQLIGHIPKTVQGMLNLQELYLGSNKLEGAIPDVICSLQYLGALELSENQFSSSVPPCLGNVTSLRTLYLDNNKLDSRLPARLGGLQNIIEFNISSNYLSGEIPLESGNLKGATLIDLSNNYFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="151342" PGL_stop="150884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151342" e_stop="150884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="151342" e_stop="150884" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151342" stop="150884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAATTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  S  K  K  I  V  *  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  *  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  F  L  K  K  I  K  S  N  K  Y  K  F  K  I  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  N  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  E  L  Q  M  T  K  L  R  G  I  S  D  L  F  P  F  Y  I  *  L  * </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  V  K  K  *  F  N  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  N  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  F  *  K  K  L  K  V  I  N  I  N  L  K  *  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  Q  Q  G  *  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  M  S  S  K  *  Q  S  *  G  V  Y  Q  T  F  F  P  F  I  Y  N  Y   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  *  K  N  S  L  I  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  M  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  K  F  F  N  F  R  *  M  K  G  I  C  E  S  F  Y  N  S  R  G  K  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  L  Y  I  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0054K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 347 chains have been computed
$ 
$ memory statistics:
$ 766360 bytes spliced alignments in total
$ 259 spliced alignments have been stored
$ 2958 bytes was the average size of a spliced alignment
$ 35488 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1774 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 382 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:49:15
-->
