<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:49:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312833" ref_strand="+" ref_description="SGN-U312833        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: ATPDIL1-1 | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 | chr1:7645690-7648830 FORWARD | Aliases: F8K7.19, F8K7_19, ATPDIL1-1, PDI-LIKE 1-1(evalue: 4e-15, score=78.6) genbank/nr: gi|47933777|gb|AAT39459.1| protein disulfide isomerase [Ipomoea batatas] (evalue: 2e-17, score=92.4)">
      <seq>agaaagaatgtgtagaattagaatcgggtttttagtataaaaatcagaaagaacggggtggacattttatctttgatgttatggatttcgttgttagagagatttttagtagaaaacatctgtaaagtgtatcaaaaaagaaggtttgtatggcttaaacacgattagcagttgtaatgcacaggacatgtatttgttgtcatttcctctcacctgcttcctcatttacaggacgcaaccgcaaatgatctcccgaaaggtgactttgatgttcagggattccctactatgtacttcagatccgcctctggtaacttgtcacagtacaatggtgagagaacaaaagaggctatcatcgaattcatcgagaagaatcgtggcaagcctgctcagtcagactctgccaaagtcgattcagcaaaggatgaactttagaggtttggttctcttccttaaagcatcaattgtgatatctgccattattggttctttgtgctacagtaattgtaatttatattgatctcctcttattcaggactctaggaacattgtgtactggtggattcaagttttgttggaagcattgtgtttctggtgaattcgacctcccaccggactactgctctctcccaacgcttccgttgtagtttttggagcttttcagcgccaataaaacggttgtatgtatccattttgtgtatcgaatgtagctggattatgagtttatattatatctattgagaagttctccaactttatagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="1260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="198" g_stop="970" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U312833" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="198" e_stop="970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTG</genome_strand>
        <mrna_strand>AGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336622" ref_strand="+" ref_description="SGN-U336622        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 8e-06, score=53.9)">
      <seq>ttacaaatgaaaattgagttacacatttaaggagtctcatgggaaaagaagaaacaaactatgttgtttgaactctcctaaaatatccctcggtgtttttgaagagtctgaacaatatagaaaacaagtgcatgttaactatccccttattagtctttagccttctctttacaatctcttttttcactatgtgtttcctttaatgctgcagaattacccttatctgaagtttgttcacttgcactaataggagtgactaaaatttcattcttgtcagttgaactggaagcaaaatttgtaacatcacttgtcttttcttgtttgttgttgttggtggtgttggaagacaccatagtggtcttgtttggtgattctacagagacttctttgaggctcattttagactcaactaatggggggggggggggggcttgaacttgaactttcacctatttgttcctccctgtcaaagttcaacagaaggccttgacctgttgaggacttttgttttgagttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28165" stop="26551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27865" g_stop="27463" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26963" g_stop="26855" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="514" r_length="111" r_score="0.817"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U336622" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27865" e_stop="27463"/>
          <exon e_start="26963" e_stop="26855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAGGTAAGTCCTCCTTCTTGACATCATTGTGATTAGTGGCTTCTTCATGAAACTTCTCTTCATCATTGGATGGTTTCTGTATAACGTTGCAATCAAAGACAAAGTATGAATTTCGTTAAGGATGTTCTAGATTCAACATACACGTATAGTTTATTATATATGCGGTTTATTTTTCCTGGCAAAGGATGTTCAACTAACCACCGTTGAGCCTATGTGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGCAGACTCAACTAAT-GAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGAC-TTTGGTTTGAG</genome_strand>
        <mrna_strand>TTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTAATGGGGGGGGGGGGGGGGCTTGAACTTGAACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAAGGCCTTGACCTGTTGAGGACTTTTGTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341543" ref_strand="+" ref_description="SGN-U341543        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgactccgtattacattattttcacaagcacaaaaatatgatataatgaatgtaacaagaaaagaccatctatttatgctgtttcaaagagagggtaagttttatgtactgataagtgcgaaaataggagaacctattctctaaagggtggtttggtttatcatactaacaaaaataatcctaccatactgtcagtatatataacttaagtaattgaaggtatcatttgatccagtctatataaacgtaccgttttagcatctgtatgatgaagttggtctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27551" stop="26666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27251" g_stop="26966" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U341543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27251" e_stop="26966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGC</genome_strand>
        <mrna_strand>TGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316037" ref_strand="+" ref_description="SGN-U316037        Tomato 200607 #1 [32 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl hydrolase family 3 protein, beta-D-glucan exohydrolase, Nicotiana tabacum, TREMBL:AB017502_1 | chr3:17324631-17327547 REVERSE | Aliases: F13I12.50(evalue: 0, score=827) genbank/nr: gi|15232707|ref|NP_190284.1| glycosyl hydrolase family 3 [Arabidopsis thaliana] gi|11264161|pir||T45636 beta-D-glucan exohydrolase-like protein - Arabidopsis thaliana gi|6522581|emb|CAB61946.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|17065280|gb|AAL32794.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|20259996|gb|AAM13345.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|20260350|gb|AAM13073.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|30725406|gb|AAP37725.1| At3g47000 [Arabidopsis thaliana](evalue: 0, score=827)">
      <seq>ctattccacttatcaccattttcttcatttctcaataatcccacttttaagttctttcccagttactattaacacaaatatttaagaaaaatctcaacttttttgttgaatacttgtaataagcagaaatggattttgtgtacaagaacccatcagctcttattgaggaaagagtaaaagatttgttgtctcggatgacacttgaagaaaaaataggccaaatgactcagatcgaacgcagtgttgctaccccctctgtcattactgacctttctatagggagtatactcagtgttggaggcagtgcgccatttgaggatgctccatcggaagcttgggcagatatggttgacggatttcaaaaggctgcgctggaatcacggcttgggattccgcttctttatggagttgacgctattcatggcaataacaatgtttatggtgctaccgtttttccacaaaatgtgggccttggagccaccagagatgcagacttggttcagaagattgggattgtgactgctcttgaagtcagggcttgtggcattaactatacttttgctccctgtgttgctgtatgtagagatcccaggtggggaagatgctatgagagttatggcgaagacaccgaacttattaggaagatgacctcaattgtcacaggcttgcaagggcaaccacctcctggatacccccaaaactatccttttctagctggaagagacaaggttgttgcctgtgcaaagcactttgttggagatgggggtactgaccgaggtataaatgagggaaataccatatcatcgtatgaagatctagagagaatacatattcccccatatattgactgtatttctcagggagtttgcacagtaatggcatcctactctaaatggaatggaagccacctgcattctagccactttcttcttactgaagttttgaaagggaagctcggatttaagggctttgttatttctgattccgaaggaattgaccgatttttccatcctcatggatctaactatgaccaaagtattttggcagcaatcaatgcagggattgacatggtgatggttccttttcggtatcaattatttctcgatcatttgaaatatcttgtggaatctgggaatattccaatgaccagaattgatgatgctgttgaaaggatcctgagagttaagtttgtttccggagcttttgagaaccctctgagtgataggtcattgttggataccgttggttgtcatcaacatcgcgaattagcacgtgaagcagttcgcaaatcactggttcttctaaagaatgggaaggatgtaacaaaaccatttcttccgctagataggaaggcaaagagaattcttgtagcaggaaaacatgctgacgaccttggattccaatgtggagggtggactaaaacatgggaaggaatgggcggaagaatcacgattggaacaactattctggaagctattaaagatgctgttggaggggaaacagaactggtatatgaagaaaatccttcaccagacacctttgcgagtcaagacttctcttattgcattgtagttgttggtgaacctccctattgtgaaagcggtggagacagccaagacctcagaattcctcttggcggagaagaactaataaacttggttgcagacagagttccaacgttggtgatattgatctccggaaggcctttacatatagagccttcgattctggagaaaatggatgccttcgttgctgcatggttaccgggcactgagggaactggtatcactgatgtcatattcggagattttgaattccatggaaccctccctatgacatggtttaagagtgtagatcaattacccctgcatcaagaacagaactcctatgaacctctctttccattcggctacggattaacaagtaaaaacaaggtgatctagacgagatgtgtcgaagaaaggtttagtgaaatagacatgtctataaagatgcggactatcagaaagactgtatgaagctttatgcaacctcttgtgtactttgtaccatttggtctctggcatatgatgttacattaagtccaaataattatatattatgtactattattaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttcatttaataacgatataaaatattcaacttattttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29669" stop="37473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29969" g_stop="30247" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31699" g_stop="31903" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="484" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31997" g_stop="32087" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="575" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32785" g_stop="32930" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="721" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33273" g_stop="33516" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="965" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34308" g_stop="34412" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="966" r_stop="1070" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34492" g_stop="34674" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1253" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35410" g_stop="35611" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1455" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36440" g_stop="37170" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1456" r_stop="2188" r_length="733" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U316037" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>2186</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29969" e_stop="30247"/>
          <exon e_start="31699" e_stop="31903"/>
          <exon e_start="31997" e_stop="32087"/>
          <exon e_start="32785" e_stop="32930"/>
          <exon e_start="33273" e_stop="33516"/>
          <exon e_start="34308" e_stop="34412"/>
          <exon e_start="34492" e_stop="34674"/>
          <exon e_start="35410" e_stop="35611"/>
          <exon e_start="36440" e_stop="37170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAGGTATGCCTTTTTTTCCCTCTTTGCCCTAAAAATAATAATGAAGGTTTCTGAGTTGGAGTCGGGATTTGAAGCTTATGAATTTGGGAAAATTTAGTTCATTTTAAGTTTTTGAGTTTGTAGGTTAGTAGGTAGTTGAGAATTGCCTTGTTTTTAAGGGTTTAGGTTTATTTGTGTCTGTCGTTGTATTAGCCGTATTAGCAGTTTTAGTTTTTGATATCTATCATCATTTGTTTGTTGTGTTTGTGTTACTGCACTGCTTTTCTCGTATTAGTGTTATGTTCTCTTGTTCTTTACATCTGAAATTGGTGAGGGTCTTTCGGGAACAACCTCTCTATCTTCACGGGACAGTGATGAAGTATGCTTATACTCTACTCTCCCTAAACCCCATGAGTGGGATTTCATTCGGTATGTTGTTGGTGTTGTTAAAGTATTGAGTTCTAAACGAAATTTACACATATTCATCAGACAAAAACGAAATTTGGATAAAAGCTATTGAGTTAGAACCAAAGTGCTAGGTCCACGCCAGTCAAGGTGATAGATTAAATTTGTTGTTGGAGTAGATATAAGTGTGATATTTAGAGCACTTTATTTAGCATTGGAATGAAATCAACCTGGATAGAGAATAATCAAGATAAATAATAGGTTTAAGTTATATACACTGACGAGGTAACATCAGTGTAGTTTAACCTGTTACATTAGGTTGCTTACCATTTGGTATAACTTATAAGTTACCAATGAATGATTATTAAGTAGAGTTACATGCAATGACCTGGTTGTGCAACTATTCTATTCCATGCCTGTGTATAGAACGAGAGCTCATAAATGGATTCATTTAGGCGTTATTAACTACCTTATAAGCATTGTGTTTAGCAGGCTTTATTTAAGCGTTTATCGGAAACATCTCTATCTCTACGAGGTAGGGTAAGGTCTGTATACACTCTACCCTTTCGAGATCCACTTGGTGGGATTGCATTTGGTATGTTGTTGTTGTAATTGCCTTATAAAAACTAAGGTGGTTCTAACTAGTTGGGTAAGTGTAAGATTTAGTTAACCCCTTACTCAGCATTGGATTGAAATGGACTTGAATAGAGTGGATGGGTATATAGGATGCATTTAGGTGATTCTAATTAGTTGGGATAAGCTAGTTATCCATGTAGAGGGACAAGTGTGAGATTCAGAGAATCCTTTATTTTGAATTGAATTGAAATGAGATGAAATGAACTGAATAGAGTGGAATGCATATAGATGACTCTTTTAGTTGATACTAACTGGTTGCTGTTAAACTAGCTATGTATTTAGGATAAGATTGGGACTTTGAGAACACTTATAAGACGAAATGGACCTAAATGGAGAGGAACAGGTATAGAGGATTCTATTCCCGGTCCTAAGATGTTCTGGAATTGTGACATATTGCTTTGCTGAAATTTATTTGAACCTTTTTCGTGGCGCAGGGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAGGTTGAATTAATGTCAAGCTTTGATCTTTATTACCAATTCTTATTGATAACTGGCATTTAAGATCAATACCTAAATTAGATAAATATCGAGCAGAGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCTGTAAGTTGAACGTGTTACTTGTCCCTTTATTGTCTTTGTTTTAGGTCAATTTCATGGATGAATGAAGTAAAGGAAACATAAGACGTTGGACATATGTACACTTAGAGCAAGATGGAAATAGGATACCCTAAGTATCACATCAAAATTTATAATTTGAATTCTTAATTGGTCCTTCCGTTACAAATTTTTTGTCCGGTTTTGACTGGGCATTGAGTTAAAGAAAGTTGCGAAAACTTACAAATCTTGTGGTCTTAAGCTATAAATATGTAGAATTTACCAAAATGCCCTTTAATATTGTGTTCTTAAACATGTCATGTGAGTGACAATTAAAGAGTTGTCAAAAAAGAAAAGATACATTCTTTTTGAAACGGACTAAAAAGAAAAGTAGGACAAACAAATTGAAACAGAGGGAGTAGTATGTTGCTAACTGAGACAAGAGAAACATGATTTGTCGTTTTTCTTTTTGGGAATTCTTGGTTAAAATTTTTATGTTCCCAGTACCTCGTAACTGCTATCTCTCTAGAAGTAGTACTTGTTTTTTTTTTGTTTGTTTGAGAAGATAAGCAGCTTGTATATTGATAAAGAGAAACTATGTAGTACCAAGCTGATGCTGAGCAATACCTCTCTAGTTGTTATCTCTTTTTAACTCTATTGTCTTGAGGCATCTTGACTTCTTCATTTAAATAATGTGAAACAGGTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAGGTAGTAGAAGTTGCCATAAAACAAGTTCCAAAATTTTGTATGCTTCTCTGAATATATATAAAATTTATTTCTCTTGTATTTTACAACCTATAATCTTAAGTCTTATGTGCATTCAAATGCTATTCCACATGTTGCAATTTTCAGCAGAAAAGTCATTAGGGAAGGAAAAGTAGAAGCATAGCTAGAGTTGAAAATAAAAAAATCAGTGTTGAAAAGTGTGTCTTAGCTATTATTACCTTATTGTTGATCATTCGCCAGATACTTCTACAGCTTTCTACTTTTGTATTTTTTGTTCTCCTAATGGCAAGGATCTCTTTGGACTGATTGATGAATTTACTCCAGAGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAGGTAAGGATTGCCTGTTCTCTTAATGCTCTATGGTTCATTTGAAGTCCAAATTTTGGACCATTAGTTCAACATAAAAATCCTCTAGATTGTTAGATGCTTTTCTCATTTCCTTACCATGCTTAGTAGGGGAAGTGATTGAACATATTGCGGTTCCAAAATGCTGAGTTTCAGGGCCCATTTTTGATCGGTATTGTTCTTTAAAATAATGTAGAAAACTAATCAAATTGGTCTGAAGCCTGCACATGTTTGGACTTTGTATTCAGCAAACACAAAAGATTCTCTCAGCAAAGAGCTAGAGAAGTTCATGTGGCTTGGAGTTTGTTCTACTTAGTTTAAACTTCACCAAGCCGAAAGTGTAAAAACTTGTTTCGATGTGCTTGCTTCAACTTACAAAGGAGTCGGTAAGGCAAAGAGAGTGGTAAGTACTCCTTTGTCCTTAACAAGAGGTCTAGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGAGTGCTTTACCCCAATGTGGGACTTTCCGACGCGAATCCGAATTTAGTCGGGCTCCAATGTGGGTAGGGGACACTGGATGGGAAACCAAAAAAAAAAGGTATGGTTAAGGGGATTAAGAAACAATGTCTCTCTTTTATCTGAATCTGGTTGCGTGGAATTTTGTTATTGTTTATTTATATTTTACCTCGATTTGAATGAAATGCTATGCACTAATGTTCTATTTGTTTGTCAAGTTGCTAGAATATGATTGGCTTAAAGATCACATACACTGCAAGAATCTGAATGCTAACTCTTGTAGGGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATGGTACATAAAACCTTGTTTTAAGAGTTATTTTGTCTTTGCATGAGTTATTTTTGTTCTTACTGTGTTAGATTTTTTGCAGGTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCATGTAAGTCCGTCTTGTCCATTTTGACAGATATTGGCAAAATATTTATCTTGAATTTTGACATTAAATAAGACCTTCATAAGTTTCATTCTATTCTGCCTTTTATCTCAACAACAAAGTGAACATCTGCTTCACATCCATGATGCACGGACTTCTCAAAATGATTGCAAGCACCCTTGTTGATGTGACATTGGTGTGGGTGTGGGATCCACGTGGGATTCGGTCAACTTATCTTGGATGCTTTGACTACATCTATGACCAAGAAGTATAGATTGATTGGCTAATTCATGAGATCTCTGAGTAAAACCCTATGTTTATAAAGAAATAAATTTTATTAGTTTTAATTCAATACCTTTAATTAATAGAAATAAATACTTTGTATAATGTTAAAATATACGTTTATTGGCCTTATCCCACTTCCCGTATCCGCTCTCGGATTCATACCCCCAAATCCTAAAAGTTCTGTGACGAAGAGTCCGACCTCTAGATGCGCACCCATAGTGGGCACCCAAACCCGAGTCTGAGCAACATAGCTTTTGCATTGCCCTTACAAAAGTTAAATTATGTGAGTTGGCAAACTGTTTTACCTGTTTTTACAATGTATATACTGCTAATTCTGTTTGTTTTGTAAAATTATACATTTTTAAAGAATGTAGGAGAGAGAGAGAGAGGAGTTATGTGCAATATATCAGTGCAGAGGCTTCATAGTAGTTTTCACCATTCTGATAATTGTTTCAGCAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTGGTAAGTTATGCTTCCTCTGTTCTAATTATATGACACTCATTCATATTTACTACATGAAAAAAACAATTTCAACTTTCTATATTGTGAAAACTCTGACTTTAGGTGTACCATTTTATTCTTAGTGACATACTCCTATAGATATAGAAATATTTGACATGTTTTAGTTCACGAGTTTTATGGGTACTTTTGGTATGTGTAGAAAGTCTTTGGTTTTTCTTAAATTTTGTGCCCAGCCAAGCACCGCCATATAAAATGGAGAGAGTAATGGAAAGATGGCATCAGTCGTTACTTATACTTTCATACAACTAGAGCATTATAGTTTAGAGTAGCATCTTTCTTTCCTTCTTTCTTACATGGACTCAAATTTACCACAAGTTTAGGAACAATATCTCAAGAGTTCCGCTCCCATTTCTTGTGGGTGATTTGTAAAAACCCTGTATGTTTGATTGTTTTCTCGCAAGAAATCTTAAGCTATAATGTCATAAAATGCCTGATATCGCCAGCTGATAGCATAATTTTGTATGACATATGTAAGCTAGTGCATACTCTTGTTAGCCTTGCACAAAGATCTTGATGTACTAGGAACCTCAATAGACCCAATGTAGTCCGGTCCTTCTGCGTACCATGCTCAAAACAGAAACTTAGTGCACTTGGCTGCCCTTAGGAACCTCAATAAGGATGAGGATTGGGATTAGACGTGCGTTGAGTCCTTTTGATAATGAGCTCATTTCTCTCAATAGGCCGATGATAATATAATGCATCTCTGAACTTAGTTTACCACTATTAATCACGGATCATTTACTACTTAAAACGGATAATTTGTTGTAGGTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACC--ATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAGC</genome_strand>
        <mrna_strand>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG.............................................................................................AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG......................................................................................................................................................................................................................................................................................................................................................AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG...............................................................................GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAACTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTCATTTAATAACGATATAAAATATTCAACTTATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318431" ref_strand="+" ref_description="SGN-U318431        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT3G47060.1 | Symbol: FTSH7 | encodes an FtsH protease that is localized to the chloroplast | chr3:17343970-17347951 FORWARD | Aliases: F13I12.110, FTSH7 (evalue: 8e-83, score=304) genbank/nr: gi|50911303|ref|XP_467060.1| putative cell division protein FtsH3 [Oryza sativa (japonica cultivar-group)] >gi|49388450|dbj|BAD25580.1| putative cell division protein FtsH3 [Oryza sativa (japonica cultivar-group)] (evalue: 5e-82, score=307)">
      <seq>atgaagcagggcacgcagtagttgggactgctgttgcaaatcttctttccgggcagccacgggttgagaagctgagcatattgccaagatctggaggggctttaggatttacttatattcctccaaccaatgaggacagatatctgctctttgttgatgaattgcgtgggaggttggtcactcttcttggtggacgtgctgcggaagaagtattgtactctggacgtgtatctactggtgctcttgatgatatacgcagagctacagacatggcctacaaggcagtggctgaatatggtcttagtcagaccattggccctatctcagtggcaacactttctggaggtgggatggatgatggtggatccatgtcctggggaagggaccaggggcatcttgttgatcttgttcaaagagaggtcaaggctttactgcagtctgcacttgatattgcactctgtgttgtacgtgctaatcccaaagttcttgaggggttgggagctcaattggaagagaatgagaaagtagaaggtgagcaactacaagaatggttgagcatggtcgttgcaccagcagaacttaattttttcataaagggcaaagaaggatctttacttccactgcaagcaggctctggatgacagaaagtgcaagcttaacccagtcaacagagtacaaaaacgaatttcgaataaggatttccacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtgttagtaaggtaaattgacagctacttaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctctagaggtgaaatgaaaataggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataaaaaaaaaaaattgacttgtgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40071" stop="43777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40371" g_stop="40438" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40439" i_stop="41755" i_length="1317">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41756" g_stop="42076" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="389" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42211" g_stop="42334" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="513" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42820" g_stop="43476" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="1170" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1171" polyA_stop="1182"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U318431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1170</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40371" e_stop="40438"/>
          <exon e_start="41756" e_stop="42076"/>
          <exon e_start="42211" e_stop="42334"/>
          <exon e_start="42820" e_stop="43476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAGGTGATCATTATTATCACTTTCTCTGAGAAATTCTTGTTCTTCCTGATTTACTGCAAGTTCGTGTTATTTGATTTGTGTTCCACTGGATAACATCTGACATCTAAAAAGAATTGATATGATAGAACTACTCTAGAAATAGAATTTCTTAAGTTTGTCATGTTTCAGAACAGGAAAATCAAATGTCTGCATGTCTTGAACAGCCTGGTTTTGACCTTTTCCAGGGACATTATGCATCAACAAAACCACTCCCCTGCATTTGGTATGGGACCTCTAATAGTGTTTAAATTGGGTTCACAGTTTGTTCTTGGGGTGATGGATTATGGAGAAATATTTGGATCATTGATCAATGCAGTCATCTGTGACCTATCCTTCTCAATGTAGTAGCACTGTTATTGAAGCAGAATAAAATAAAATATAAAAAATAGAAAATGGAGAAGTAGTGGCTTATTGGTGTCCTGTTGATTGATAAGAATGTCCAAAATGGAAAAATGCCTGTGTTTGGATCTAATACTTTATTCTAATAAAAAATGGGTGTCTGGATTTGATAAGGAATAGGAAATGACTTGGTTCTGATGTCAGACTTGGGTACAACTCAAATACGCTACTGATTGTTTGACCTTTATTTTCCCTAGAAAGGCAACTCTGGAAGAATGTTATATGTACATAATGACCTCACTTATCAGGAAAAAACAATATAAGGTTCTTTCTCCCTATCTCTCTCTTTTCTGGTGTTCTCCAGATTCATGGAAATATATTTTCTGGGTAAAAGGGTTGTATGCCTTCCTTAATGTTGTTTCTCCTCAACAAAAAAAGAAGAAATAGTATCATAGTTCTATATTTCTGGCTTGAGTAGGTGAGGTATTTTATTCCATGATTTTGGTGTTGGTAAATAGAGAGCGAGCGACTCACTCTCCAACCCCCCAACTTTGTTTTTCTCAATGTGAAAGTTGTTACTAATGAGAAATCTCAAGTGATTTTCCTTGTTATTTCCCCTTCCTCTCTTTCTTAATTTTGACGGCACCAGTTCATTTCTTTTACCTCCCCCAACTATCTGTTTCAAATGAACCATACCAACATGGTTCTGGAAGTGGTCTTCCTGCAAGTTCTCTCAATATCCTGATCCTTTTCATGGGAAAGTTTGCAAGTGAGGTCAGCCATTTCTATATTGGTACAGATGCTTAAAGTCTTTTGCTAAAATCAGTACTTTGCTTCTACTCAACCTTGCTTTTCTCAAACTATGATTGTTGCTTTTGTTGTACATAATTGGGATTAGTGCAGTTATGGTATTAATAACAGTTCTCTTTTTTCGCTAACCAGAAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAGGTCTTTCCGCTTTTGCCCCTTTCTTGTTTTCTGAATTCTCTGCTTTTTTCTGCTCTAACATTTAATCCCAACTTATGTTTCTAACTTGAAAATACCACATCTTTAGCAGAACTGAAAGTAAAATTATTCCACAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAGGTAATATGTTCAATGTCACTTTAGTAGTCAAATTTTTGGTATTCTTTAGTATTGCTTTCTTTCAATTAACTTCACAAGGTAATGATTTTGCATTAAAGATAAATAGAAGAATCTCATTTTATTTTTAATATGTCATATTTTTAATATGTTAATTAATAACAAAGATCTCTTTATGATATGTGATGTGTCTTTTCCTTTCAATCTCTTTACCTTTTTCTTTGTGGAAGGTGGATACTCTTTCTATTCCATTTTATGACATTGTTTTGGTTTAGTATGTGTTAAAAGTATGGCACTCTTTTATGTTTGGGAACTCTCTAATTCTATACTTCCTATTGTACTGTCAATGTGATGCTCTTTTCACTACAAAAATGACATGTTTAAGACCACAAGTTTTTATGGGTACTATATGCTCAGACCGACATATAAAATGAAACTGGAGTTTTATATTTGGTACTCTTTTATGGATTGATATTTCTTCCTCTCAGAGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</genome_strand>
        <mrna_strand>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG......................................................................................................................................GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318432" ref_strand="+" ref_description="SGN-U318432        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttcgaataaggatctgtacgccttcatctgtgctctctagggaaacaaagctatattcctgaaccagatgggcatcacttgctggcatccagacagcgtgattttgcatgtaattgacagctacgtaactcctacaaacaccattgttatataccacgatcacagattgttaactcgaagagaaggcatgcgcaaaagatctagccaagagtttcttggttctagaggtgaaatgaaaatagtttaggctcgtgatcagagtgatgtctgttggtattttcttctacatcacttgtacatgtgcccaattattcttagtaattacacaagaatcaataccttaatattgtaatatacatctgtactgcagcttacaaagaactaatccatgtctaatgttgtgggagaaggtgtgaaactgtgtatacaatgtaatctttctgattatgagacaaagtttcagtaggttgccataatctttgacttgtgtaaaattacaagtattggatgaggtaatagtgacaattccttgtgcttgtggttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42693" stop="43846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42993" g_stop="43546" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="569"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U318432" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42993" e_stop="43546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATG-AAA-A---TAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</genome_strand>
        <mrna_strand>TTCGAATAAGGATCTGTACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGC-------A-T---GT-AATTGACAGCTACGTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGG-T-TCTAGAGGTGAAATGAAAATAGTTTAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48025" stop="46618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47725" g_stop="46918" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47725" e_stop="46918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48684" stop="47436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48384" g_stop="47736" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48384" e_stop="47736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340965" ref_strand="+" ref_description="SGN-U340965        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G58870.1 | Symbol: FTSH9 | encodes an FtsH protease that is localized to the chloroplast | chr5:23787038-23791006 REVERSE | Aliases: K19M22.17, K19M22_17, FTSH9 (evalue: 7e-78, score=287) genbank/nr: gi|18424166|ref|NP_568892.1| FtsH protease, putative [Arabidopsis thaliana] gi|9759220|dbj|BAB09632.1| cell division protein FtsH [Arabidopsis thaliana] gi|16648973|gb|AAL24338.1| cell division protein FtsH [Arabidopsis thaliana](evalue: 5e-76, score=287)">
      <seq>ggaaagataattggtggtggtccaagggcaggaaattgaggtgggaaccgatagttcaagctcaagaaattggggttttgttattgcaattggggattgtgatgtttgttatgagattactaagacccggtttgccattacccgggtcggatcctagagctccgacaatgtttgtaactgttccatatagtgagtttttgagtaagataaatagtaatcaggtgcagaaagttgaggttgatggtgtacatataatgttcaaattgaagagtgaagtgagtagtagtgtaatagagactgaggttgtgaatgtgaatgaaaatggaaatagtaagttgcaagattctgaggcagtgataaggagtgtaactcctacaaagaaaattgtgtatactaccacgaggccgagtgatataaagaccccttatgagaaaatgcttgagaatgatgttgagtttggttctcccgataaacggtctggtggattcatgaactctgcactgataacattattttatattgctgtactagcggggcttcttcatcgcttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60306" stop="59194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60006" g_stop="59504" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U340965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60006" e_stop="59504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG</genome_strand>
        <mrna_strand>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312834" ref_strand="+" ref_description="SGN-U312834        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: ATPDIL1-2 | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. | chr1:29131544-29134506 FORWARD | Aliases: T5M16.10, T5M16_10, ATPDIL1-2, PDI-LIKE 1-2(evalue: 2e-92, score=335) genbank/nr: gi|47933777|gb|AAT39459.1| protein disulfide isomerase [Ipomoea batatas] (evalue: 3e-101, score=370)">
      <seq>caaaaatggcaaagagtggcattttggtaattgtttcagctcttgttgttcttgcagtttgtggtgtttttgctgaggagaacgaatatgtgttgactttggaccattctaacctcactgagactgttgctaagcacaacttcattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagagctgagtagtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagtacgagatccagggtttcccaactattaagatattgagagatggaggaaagaaagttcaagactataacggtcctcgtgaagcagctggtattgtatcctacttgaagaaacaagtgggtcctgcatctgctgaaatcaagtcgaaggaagatgccacaaaccttattgatgagaaaagtatctttgttgttggtatatttccagacccctccggagagaaattcgagaactatttaacgctagctgaaaaactgcgaggcgagttcgattttgctcacactgttgatgctaaacacctccctcggggtggaccagtcaacaagcccactcttcgtcttctaaagccatttgatgaactctttgttgattttgaggactttgatgtcgatgcaatggagaagttcatctcagaatctagtattcctggttgtactatttttgacaatgacccaaagcaccatcctttatgtaaacagttctttcgaggcaccaaacgccaggcattgctatttgtgaactttagctctgaagttgatgcttttaagtcaagntacacgatgttgctgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68468" stop="71645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68768" g_stop="68936" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="200" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70554" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="488" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70653" g_stop="70838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="674" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70954" g_stop="71079" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="800" r_length="126" r_score="0.873"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194">
            <donor d_prob="0.981" d_score="0.73"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71274" g_stop="71345" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="871" r_length="71" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U312834" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68768" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70554"/>
          <exon e_start="70653" e_stop="70838"/>
          <exon e_start="70954" e_stop="71079"/>
          <exon e_start="71274" e_stop="71345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTAAGTGGTGATACTTTTGATGTTTTACTTATCATTACTGAAGTTTATTTTCAGCATGCCATAGCTTCTTGCTGTCTAAAATCTTTCTGTTTCTTTAGGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGTATTACAGTTATCTGTGTATATTTTTATCTTTGATACTCATTGTATTATGGTTATGAGGCTCAACTCTGTCCTATGTTATCTTTTAATTGGCCATTGATTGTACATACTTGCAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCC-TTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGTACTTGATTCTGCGAGCTGTAATGCTTCAATTTGACCTTATATTTCAACGTCAAGCAATTCTAGGATCTTCTCATGAATTTTACAGTTATATGCTTGTACTTGTATTATTTTCTTTTCATTCACTAATATTTGACAATTAACTTCAAAGTTCTAAGAGATTGATTTGTTTTTTTGACATTTGCAAATCTACAGGCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATT</genome_strand>
        <mrna_strand>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT..................................................................................................GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG...................................................................................................................GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGGTTGTACTATTTTTGACAATGACCCAAAGCACCATCCTTTATGTAAAC-AGTTCTTTCGAGGCACCAAACGCCAG..................................................................................................................................................................................................GCATTGCTATTTGTGAACTTTAGCTCTGAAGTTGATGCTTTTAAGTCAAGNTAC-ACGATGTTGCTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333955" ref_strand="+" ref_description="SGN-U333955        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATPDIL1-2 | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. | chr1:29131544-29134506 FORWARD | Aliases: T5M16.10, T5M16_10, ATPDIL1-2, PDI-LIKE 1-2(evalue: 5e-43, score=171) genbank/nr: gi|47933777|gb|AAT39459.1| protein disulfide isomerase [Ipomoea batatas] (evalue: 2e-43, score=179)">
      <seq>tagtggcattaaggtaattgggggagctttgggtgttcttgcaggtcgcgcgtgttttcgctgaggagaacgaatatgtgtcgactttggaccattctaacctcactgagactgttgctaagcacaactttattgttgttgaattctatgcaccttggtgtggacactgtaagagtcttgctcctgagtatgaaaaagctgcctcagatctgagttgtcatgaccctccaattgttctagctaagtatgatgcaaatgatgaagccaatagagaactttcaaaacagttcgagatccatggtttcccaactattaagatattgagagatggatgaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68505" stop="70718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68781" g_stop="68936" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="188" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70267" g_stop="70418" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="340" r_length="152" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U333955" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68781" e_stop="68936"/>
          <exon e_start="70113" e_stop="70143"/>
          <exon e_start="70267" e_stop="70418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTG-GTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTAAGTCATCTGCTGTTTTTTTTTCTATTTATTTTCTTGAAAAAAGTTCATTTTTTTTGCTTGTTGAATCTGTATGTGCAGAATGTAATGAATGATTGGATGTAAGGGGTTTTGTTTTTGATCTGTTTTTTTTTTGTTATTTTAGTGAATTTTTGCTGTAATTTTTTTGTTTTCATAAGCTGTGTGAGGAATGCATCAAGATCAGTTCTTTATGTTAATTTGTCTTAAAGGGTTCATCAAGGACCCCTTTGGCTCTACTTTGCTGTTCCTGTTTTTTTTTTTTTTTTGGAGTTTTATCTTTTTGCTGGTTTCTCTGGCTTTAGAAACTGCATGTGCAGAAGATAATCAATGACTGGTTCTTTTTCTTTTGGGGAATTTAAGGTTTTGTTATGTAAATGGTTTTTTTTTCTGATTTTTCTGCTGTAATTTTTTATTTTACACATTGACTTGAATTTGTCTGAAAGGGTTTTTCAAGGATCCTTTTGTTGATGGATGTATTTTGATTTGTGGATTGATTGAGGTTTTAAGGCTTTTTCTGTAAAAAGCTTCTTCTTTTAATTCATGGTTGATGCTTCTAGAATCTGGATTTGCTTGATGAGTTCTAGGTTATAAGGTTTCCTCTTTTTATTTAATTTGCTGCTTGTTTTTTGGTATTTAAAATCTCTGTGTCCAGAATTTTACAAAAATATTAATAAATCTGGATTTGTCTTTGTGTTCTGTGTTGCTGCAAGTTAATGGTTTTTCCATTTCTGTGACAGTCTAGTCAATTGGAATGTAAAATCTGTTTTTCTATTTTTGTGTATGTATTTGGATCTATGTCAAGAGGTTCCAGTGATCTGTGTTAATAGAAGTGATTCTTTTAGCCAAATTGTCTTCTTGTTATGTGTAGTGGTGGATCCAATGTAATGGTACCAGGTTCATCTGAACCTAATAGTTTCGACTCGGAGCATAAATTTATGTGTAGGAATTCACTAAAATTGCAATAAATAGTAGACATGAATGATGTTGATGACGACATGCTTGAGATGGTTGTATTAATAGCTTGCATTAGTTTCGATCTTTTCTATGGTATCAATTCCCATAGTTATACGTTGTTGTCGAAATGTTTATTTAGTTATTCTTTGACATGAAATTTTTTTACTTTATGAGTAACTGATAATATACTTGCAATTACAGGTGTGGACACTGTAAGAGTCTTGCTCCTGAGGTACACTTTCTTCTATACAGTGCTTAATGAAGGAAGGAATATCATTTTTCTCTGTCATTATGTTTTTTCTTGGCATTTTCAATCTATGCAACTGATTTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAA</genome_strand>
        <mrna_strand>TAGTGGCATTAAGGTAATTGGGGGAGCTTTGGGTGTTCTTGCAGGTCGCGCGTGTTTTCGCTGAGGAGAACGAATATGTGTCGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTTATTGTTGTTGAATTCTATGCACCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACACTGTAAGAGTCTTGCTCCTGAG...........................................................................................................................TATGAAAAAGCTGCCTCAGATCTGAGTTGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTTCGAGATCCATGGTTTCCCAACTATTAAGATATTGAGAGATGGATGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318979" ref_strand="-" ref_description="SGN-U318979        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-64, score=244) genbank/nr: Integrase,(evalue: 0, score=853)">
      <seq>ttttttttttttttttttttttttttttttccaaaaaaaaaaaaaatattaaaaaatatatcatttcaaagtgtgtgtttatatgtttcatatagtggctatttatagccatacattaatgcatacaaggtcattagtgatgtcatattccacatgacactacaattattttacactacaattattttacaacactcccccttggatatctatgtaaaagaaagtacatagatatacataatacgctttatttgctgcctcattaaaaaccttaccaggaaaacccaacttgggacaaaaccatagttaaggaaaagagtacaacgcgtatttcactccccctgatgaaaactttacttgatatcttggagacggcgcattccaatcttgtatctcaacttctcaaacgttgatgttggcaatgcctttgtgaataaatcagcaagattatcacttgaacgaatttgttgaacttctatctcaccattttgttgaagatcatgcgtgaaaaagaactttggtgagatatgctttgtccggtctcctttgatgtatcctcctttcaattgagctatacatgcagcattatcttcgtacattgtggttggtatattctttttcaaagaaaaaccacacatttcctgaatatgatgggtcattgatctcaaccagacgcactctcgacttgcttcatggatggctattatttctgcatgatttgaagaagtggctaccaacgtttgcttcattgatcgccaagatattgccgtgtctccacatgtaaacaaatagcctgtttgtgatcgggctttatgcggatctgataaataccctgcatctgcgtaaccaatcagttctgatttggattcattggaatagaataaacccatgtccatggtccctcgaagatatcgaagtatgtgtttaacaccattccaatgtctttttgttggggaggaactgaatcttgccagtagacttactgcaaaacagatatctggtcgagtattgttagcaaggtacattagtgccccgatcgcactaagataaggagtttcatcaccaagaagctcttcatcattctcttgaggtcgaaatggatctgtattgatgtcaagcgatcttaccaccattggagtactcaatggatgtgagttatccatgtaaaaacgctttagtatcttttctgtgtacgttgattgatgaacaagtattccatttgacaaattctcaatctgtaggccaagacaaaattttgtcttgccgagatctttcatttcaaattcttttttcagacactcaatagcttctaaaagctctttaccagtgccaatgatgttcaaatcatcaacatacacagctattattacaaattcagaccccgaccgtttaataaaaatgcagggacaaatcgggtcatttttgtaccctttctttaacaaatattcactcagacgattgtaccacatccttcctgattgtttcaatccatacagagatttctgaagttttattgaacaagtttctcttgaatctttgtatgcttcaggaactttgaatgcttcaggaattttcatgaaaatgttgtggtccaatgagccatatagataggctgtgacaacgtccattagacgcatttcaagtttttcatgaactgccaaatttatgagatatctgaaggtgattgcatctaccactggagaatatgtctccatataatcaatgccaggtctttgagaaaaaccttgagcaacgagtcgggccttatatctcatgacttcatctttctcatttcttttccgtacaaaaacccatttgtaccccactggcttgataccttcaggtgttcggattatcggtccaaaaacttcacgtatttctagtgaagccaattcagcttgaattgcatccttccattttggccaatcatttctctgtctacattcgtgaacagattttggctcaaaatcttcatattgttgcattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13385" stop="89088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82503" g_stop="82556" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.685"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82557" i_stop="83398" i_length="842">
            <donor d_prob="0.106" d_score="0.66"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83399" g_stop="83428" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="81" r_length="29" r_score="0.733"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83429" i_stop="84377" i_length="949">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84378" g_stop="84390" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="94" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84391" i_stop="84656" i_length="266">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.144" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84657" g_stop="84727" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="155" r_length="61" r_score="0.606"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84728" i_stop="85120" i_length="393">
            <donor d_prob="0.951" d_score="0.62"/>
            <acceptor a_prob="0.430" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85121" g_stop="85130" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="164" r_length="9" r_score="0.600"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85131" i_stop="86904" i_length="1774">
            <donor d_prob="0.067" d_score="0.00"/>
            <acceptor a_prob="0.376" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86905" g_stop="86945" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="205" r_length="41" r_score="0.756"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86946" i_stop="87001" i_length="56">
            <donor d_prob="0.900" d_score="0.76"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87002" g_stop="88788" g_length="1787"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="1990" r_length="1785" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U318979" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>2006</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82503" e_stop="82556"/>
          <exon e_start="83399" e_stop="83428"/>
          <exon e_start="84378" e_stop="84390"/>
          <exon e_start="84657" e_stop="84727"/>
          <exon e_start="85121" e_stop="85130"/>
          <exon e_start="86905" e_stop="86945"/>
          <exon e_start="87002" e_stop="88788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATTATTGTTATTGTTATTGTGCACAAAAAACAAAAAAAAAAAACTAGGCAACCTTTGATGTTCCTAACTAAAATTCATTTATTTAAATTATTTGTCCATTCCGCATGTATTGAGAAAGAACTAAATGAGAAAATTTAAATTTGAGAGGAAGAGCAAAAAAGCAAAAAGACTAATCTATAGCATAATTAAAGTAATAAAATCTAATTAAATTAAGTATGTCAATTTAAGTTGAGAGAAGCAACTATAACCAGTGAAATCTGAAAAAGATAGATTGTACACAGACCTTATAACTATTTTACACAACTAGAAAGATTATTTCCGATATATATATATCAAATCAATCAAAAAGCTAAAAAAATAATTAAAAGAAAAACTTACAACACTAGAACCTTCAACTGATTCATATAAAAAACTTGGAGCTTCATGATCCTCTTCTTTCACCAAACATCGATACGCCAACACCGGAGTCAGATGATCGGAAAAAATGGTAGTGTACAGCGGAATCAAGTTTCCGGTTTTAGAAACTTCAATGAACCTCTTCTCATCAATAACTGAACAAAAAAAAAAAAAATTTATTTATTTACTCTCACACGATTTAATCAGTCAAATTAAGTCACATAAATTGAAATATATACCGTGACGAAGAGATGAAGAGCAGCAATGGAGACGAGCATAAGTTGAACTCCGAGAGATCGGCAGAATATTCCGATGACAGATAGGTAACAATTGCATTTTATAGTGTTCGAAAATTGAAGTGAAAGATTTTGGTGATAGTGACTTGGAAAATGGATCACTTATTTATACTCTCAAAAAAAAAAATTATAACAATGAAAGTTGATTTAATTAATTTTTTAAATTTGATAATAATATTGTTTGACTTCAAAAAAAAAAATTATAACAATGAAAAGTGGATGTTATAGTATCATATTTATTGACATTATATAAAAATAAACTATTTATTAATATAAAAAGTGTAATAAACACATTAAAAATAATTGTATCTTGTTAATTATATTTATTGAATTCATATAAAATTATATTCATTATACATGAAATACAATGTGTGCGTATAATTCGTTCTAATATATATATATTTGTTGAATGGTTCATTGTAAAATAAGTTCAAATATACGATAATTCATGATATAAAATATTCATTGTTACTTAAAGTCCGTTGGGATTGATTTAAAAATAGCTTTTAAATCAAAAATAAAAAAATAAATTTAGATGACTTTTAAATCAAAAGTAAAATGTATGGAGGGACATACTTTTGGTTTTTGACTTATTTCAAGTCATTTTAAACTTTTTTATGTTATTTTTAACCTTGTTAAATATTTTTTAACTTATTTTAAGTCATTTCGACTTATTTTAAGATATTTTTATATTTGTTAAAGACTTGCAGAAGTAAAAAAAAATGACTTAATTTAGGTTTGACTAACTTTTAAGTTAATCCAAACTCTCCCTTAATAATTAAATACTCTCAACATACTATTTTATATGTCATCTCTTTCTATAAATAGTTAAACCACAATACTTGTCATATTATAAAATTTAGGGAGAATACACAAATACCCTCTAGATTATAACCGAAATTTCAGAGACACACCTTAACTAAACTAAGGTCCTATTACTCTTAAATTTATTTTTCTTGTAATACCTTTTGTCTTACGTGGCACATTCTGTGACCCTACGCAATTGAGGCGCGTAGGAAATATTTGGATGCCACATAAGCCAAAAGGTGTACAAAATTATTAAAAAAATAAGTTCAAGGGGTAATAGGACCGTAATTTAGTTAAGTGTGTCACTGGATTTTGGTCATAATCTAGGGGGTACTTGTGCATTTTCTCTAAAATTTATGCATAAATTACCATGTTTCCTATTATAGCCTTGATAGAATAGTTGATTAATCTTGTCATTTATTAATAAAGTTGACTTAAGAAAATATTGAATAAGGCTAGAAAAACAAAGTTACATCATATCTTAATGCAATTGTAAATTAAAAATGTGACATATAAAATGGGACGAATGGAGTATTATTCATTGTATTTTTACTAAAATATTCAATGTATGATTGAGAGAAAATAAGTTATATAAGCAACATAGGAAATTTTTGAAACCATATTCAAAAATGGCTTCTCATTTAAAAGGTGTCACAAAATTAGCAATCACAAATCAAATACGTAAACTGTTATGTGAGTACGAAAAAATCATTCCACATGCACTTAAAAAGCCTTGCAGTCGTGGCAACATCGAAACTTTCGAATGCAATAAAAAAATTTAGAGATAAGCTTCAACTAACTAGATTCAAATTTCAACAACAAACAAAAAACACAATGGAATCATATTTCAATAAATTCTATTTGATATATGTGTACTTTCAAAGAATTTTAAATATATAATACTAACAAAATCATATATTTATATAAGGATCTTTTGAAAATATATTATCTTATCGAAATGCGTGATTTATTTCATTGATCCAAATCGAAATCTAGAGAAAAAGTTTTGTGCTAGAAAGATTATTAGTTTATCGAGTATTAATTTATTGAGATTTTAATGAATTTCTACTTTTCTTGGCCATACATAATGATTCACGTGTCTCAATTAATAGGGATAATATAGTAAAAGAAAAATACTCAAATACATTGAAATTTAAGAAAAATATCATCTACATCGTTCGTAAAAAACTTGGTTCATCGATATCATTTTCATTAGAGAAAAAATTCATCTATTCCGTTATTTGTTAAATGAAAAAGGTTTCAATTTCGCAAAATCATTTTTTATCTGTGGACAATTATAATTTGACATTGCTATTAAGTAAATCATTTTTTTATAAAAAAAAATGTCCAAATATGATATCAAACTTTGAAAAATAACTCATTTATGTCATCTGCTTAAAGTATGGTTAATCTATATAATTTCAATTAACAAACAATGGCATGGATAAGTCTTTACTTAAACAGATATGATATAAATAATGTATAATATAAAAAGTATTCTTTTAACGCTGGATAACCTATTTAAGCAGTTTTTCAATAATAAAATAATATAACAATTATTATTTTCTTAATAAATACGTCAAATTTAGATATAACTAAAAGTACACTAAAAAAGTAGTAACTAATTTAACTGCGACCGACTCCCAAATAATTGTGACAACTGTTCCTTTTTGCAGATAGGATAATTTATTATTTTGTTTTAAATTTCTTAACCTACTGGAATACTACTATTAACTCAAAACTGCTATTTGCATCATTGCCATAAATGAGGAATTTATGACGTGCAGGCAACCGTTAAATGACCACAATTATGGGACTAAAATATGAAAATAAATATTACCTTTTAAAAAGGATGATTTAATTTAATTTAAAATGGAGTTTAAAAAATGAGAGAATTTTTTTTAATTTTGTGGTTCAAAAGTAAAATTATATCAAATGTATCAAAATGTCCTTCAATTTTGTGGTCTTAAACATGTCACGTGAAAAGTTAAAGTGTTGCCAAATAAAAAAAGAGGTCATTATTTTTGAAACAAAATAAAAAGAAAATAAAGACATTTTTTTTTAAAACGGAGGGATTATAAAAAAATCAATATGATCCTTTTTTCTCCCAAACAGAGGCATTCAATGTTTATATTAAATTAATTTAATTTCGGGAAAATATATAAGTACCTTCTTGACAATGATCAAAATCTCAGAAACACATCTTAACTAAACTAAGATCCTACTACCTCTGATTTTTTTTTTTTTTGTAATTTATGCACCTTTTTGGCTTACGTGACATCCAAATATTTTCTAGCGCCTCAATTGCGTGGGGTCACGAAGAGTGTCATGTAAGACAAAAGATGTATATTATTACAAAAATAGAAGTTCAGGGGTAATAAAATCTTACTTTAATTAAGGTGTCTTTCTGAAATTCGGTCATAATCTAGGTGGTACTTGTGCTTTTTCCCTTTAATTTCTATTACAATGTAATTTAAGGAAGTAAAATTTATGTTATAAAATTTAAACATATGACAAATATGTATTGAATTGATATAAATATTTTGTGTGAATAAATTTTATCCCAGATAAAACTAAGTCATTAATATTCCTTTAAATTCTAAAAGTTCATATTACTTTACTCAATGGAAAAATAAATAAATATATTTTTGTTGCAAAGAAAGCTCAGAATATAAGATGAAAAAGACAAAAAGTATAAGATAGAGGAGATAATTTTCTTATTCAAGTATATCATACAATGGTGAATGATATCTCTATTTATAGTGTTGAGATATCATATTCAAAGGTCACCTTGAAATTTTACATAGTTATCATCAAGGTTCATATCACCTTGATATCTTATCACATTGGAAACACTAATACATGAATTCAATTAATTGTTGGATAACTCTAATAGATCATCCAGATATACAATGAATTTACAACACTCCCCCTTGGATATCCATAGATTATGTGCCTCATTAAAACCTTACTAGGAAAAACCCAGTGGGAAAAAGTCTAGTGAAGGAAAAAGAGTACACATATCT-CATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCATGAAAACCCAACTTGGGACAAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCGCTCCCCCTGATGAAAACTTTACTTGATATCTCGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAATGTTGATGTTGGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACCTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATACGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAACTATACATGCAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTTCTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCACGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATTGTCATGTCTCCACATGTAAACAAATATCCTGTTTGTGATCAAGCTTTATGAGGATCTGATAAATACCGTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTGCATGGTCCCTCGAAGATATCGAAATATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCTAGTAGACTTACTGCAAAATAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGATAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAACAGCTTTTAAAAGCTCTTTATGAGTGCCAATGATGTTCAAACCATCAACATACACAACTATTATTACAAATTAAGACCCCGACTGTTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGGCGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCTTCAGGCACTTTGAATGCTTTAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCGATTAGACGCATTTCAAGTTTTTCATGAACTACCAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATAAATGTTAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCACCTTTCTCATTTCTTTTTCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTTGGATTATCGGTCCAAAAACTTCACATTTTTCTAGTGAAGACAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCATCTTGTTGCATTATTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAAA-AAA-AAAAAATATTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATATCATTTCAAAGTGTGTGTT-TA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTTCATATA..........................................................................................................................................................................................................................................................................GTGGC-TATTTATAGCCAT-AC--AT-TAATGCATACAAGGTCAT-T-AGT--GATGTCAT-ATTCCACAT.........................................................................................................................................................................................................................................................................................................................................................................................................-GACACTACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTTACACTACAATTATTTTACAACACTCCCCCTTGG........................................................ATATCTA-TGTA--AAAGAAAGTACATAGATATACATAATACGCTTTATTTGCTGCCTCATTAAAAACCTTACCAGGAAAACCCAACTTGGGACAAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCACTCCCCCTGATGAAAACTTTACTTGATATCTTGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGCAATGCCTTTGTGAATAAATCAGCAAGATTATCACTTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACATGCAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTCCTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCTCGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATTGCCGTGTCTCCACATGTAAACAAATAGCCTGTTTGTGATCGGGCTTTATGCGGATCTGATAAATACCCTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTCCATGGTCCCTCGAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCAGTAGACTTACTGCAAAACAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGACAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAATAGCTTCTAAAAGCTCTTTACCAGTGCCAATGATGTTCAAATCATCAACATACACAGCTATTATTACAAATTCAGACCCCGACCGTTTAATAAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCTTCAGGAACTTTGAATGCTTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCCATTAGACGCATTTCAAGTTTTTCATGAACTGCCAAATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGCCAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCATCTTTCTCATTTCTTTTCCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTCGGATTATCGGTCCAAAAACTTCACGTATTTCTAGTGAAGCCAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCATATTGTTGCATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339613" ref_strand="+" ref_description="SGN-U339613        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 1e-44, score=182)">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90948" stop="89799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90644" g_stop="90099" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U339613" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90644" e_stop="90099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG---A-A-ATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGACCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90847" stop="89866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90534" g_stop="90166" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90534" e_stop="90166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332943" ref_strand="+" ref_description="SGN-U332943        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:12587406-12588456 FORWARD | Aliases: None(evalue: 7e-76, score=280) genbank/nr: gi|15144515|gb|AAK84482.1| unknown [Lycopersicon esculentum](evalue: 5e-123, score=443)">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92250" stop="90879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91942" g_stop="91179" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U332943" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91942" e_stop="91179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACCGTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGTAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAACAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGTATGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319960" ref_strand="+" ref_description="SGN-U319960        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:17554749-17555855 FORWARD | Aliases: F6G17.14(evalue: 2e-20, score=96.7) genbank/nr: expressed(evalue: 1e-32, score=143)">
      <seq>gacctaccaccaactcccaataatctcaaaatatctttgaaggaaaaaatatctaccccaaaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaatttatattagccaaatatcagctaagggggtgtgatggaatggttcgaataacctaaaccattaaccagaggtctcgaatttaaactgttgtgaacgaaaaatagcattataaaggatatccttttctttctgtgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117095" stop="120916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117394" g_stop="117827" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119014" g_stop="119106" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="527" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119835" g_stop="119969" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="662" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120300" g_stop="120610" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="973" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="977" polyA_stop="989"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U319960" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>973</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117394" e_stop="117827"/>
          <exon e_start="119014" e_stop="119106"/>
          <exon e_start="119835" e_stop="119969"/>
          <exon e_start="120300" e_stop="120610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATAATTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTCCTGT</genome_strand>
        <mrna_strand>GACCTACCACCAACTCCCAATAATCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344643" ref_strand="-" ref_description="SGN-U344643        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to HUA enhancer 2 (HEN2) / DExH-box RNA helicase, putative [Arabidopsis thaliana] (TAIR:At2g06990.1); similar to superkiller viralicidic activity 2-like (S. cerevisiae) [Homo sapiens] (GB:CAI41730.1); similar to superkiller viralicidic activity 2-like (S. cerevisiae) [Homo sapiens] (GB:CAI41863.1); similar to similar to putative DEAD/DEAH box helicase [Schizosaccharomyces pombe] [Dictyostelium discoideum] (GB:AAO51181.1); similar to superkiller viralicidic activity 2-like [Rattus norvegicus] (GB:NP_998724.1); similar to superkiller viralicidic activity 2-like [Mus musculus] (GB:NP_067312.1); contains InterPro domain Helicase, C-terminal (InterPro:IPR001650); contains InterPro domain DEAD/DEAH box helicase (InterPro:IPR001410) | chr3:17301878-17309052 REVERSE | Aliases: F13I12.10(evalue: 1e-67, score=253) genbank/nr: gi|6522577|emb|CAB61942.1| putative helicase [Arabidopsis thaliana] >gi|15232685|ref|NP_190280.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (evalue: 8e-66, score=253)">
      <seq>gctagatgacctgaaccagaagaggcagtggcgatcatgtctctttngtgtttcagcaaaaggagacttctgaatctttcctcacgccaaagctttctcaggctaaaaagagattacatgaaactgcaataagacttggggagcttcaggctcagtttaagctgccgattgacccaaaggagtatgcccaagagaaccttaagtttggtttggttgaagtggtatatgaatgggcaaaggggaccccatttgctgagatatgtgaactcacagatgtccctgaaggtgtgatagtgaggactattgttagattagacgagacttgtcgtgaatttagaaatgctgctgcaattatgggcaactctgcactgtacaagaaaatggaaactgcatctaatgtgatcaagcgcgatatcgtgtttgcagctagcttgtatattaccggagtttgattagaggtcaggaagccttgatttcatttgcaattctaaaggacctgacgatacacatgttgtaccctagaatatgttcgccaaggtgtggactttgagcaaggctaccctacaatttggctaatttgtacagaaattcaagtctttcaaatgtacatttagcaattgacagtagattacaccctgattagcacagagagatacatgaacttaaaaggatttactgtatgacattctcttaaaatttaggtatgattttgaagttctgcatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123651" stop="120506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123351" g_stop="123238" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123237" i_stop="121571" i_length="1667">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121570" g_stop="121444" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="239" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121443" i_stop="121290" i_length="154">
            <donor d_prob="0.097" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121289" g_stop="120807" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="725" r_length="486" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="737"/>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U344643" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344643" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="123351" e_stop="123238"/>
          <exon e_start="121570" e_stop="121444"/>
          <exon e_start="121289" e_stop="120807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAGGTTATTTTCTTCTCAAATATTTGGTGTGATATGCTCATGTTGACGTGTTGTCATTTTTCCTGTTCATCTATGATATATATATATTCAATTGTTTTTGGTATTTTTGGATAAAAGTTTTTATTGAAGATTTTTGATAAGATTTTGTGTTTGCGGTGTCTGAGTTTTTGAGGGATCAAACCTGTATATCAGCCATGTATATTTCTTGTAATGTTTCTTTAATGGATGGGCTTAAAAGACTGTGAAGACTTCTCCTCGTTATACATTAGGTTTAATGATAGAGAACTCATCAAAATTAATTGATGAGATGATTGGAATATGATATCTATAAAAGATGTACTTTCCTTTTTATCACTGCTTTGTTGGACAATTTAGGATTCTAACTTGGTATTTATATCTAGGATGGAATAAAATACATCATTCTTGTTTTTTATGAGAACAGAACATATCATGTTAAATGTATTCTCATGTTTCACAGAATTGCATATGCAAGTTGTACGGGATGCTAGTTACTAACTTGGGTGTATCTCAATAATTGGATTATAATATATCACATTTTTCACGGAATTGCACATCACAAGGTCACAGATCAAAGAGCTATGACACCTTTTCTTGATATAATAAAGTGGGTGCTGTGAAAGTAGAGATAAGAGTAAATGTGTGGTAAGCAATTTTTGTTTAGTGTCCCACGTTGATGGTGGAAATGGGCTGTTGTTTCTTATATGGTTTTGGGAAATCCTCATTGCATGAATTAACTTTTGGGGTTTAGTTAGGCCAAAGGTCCATTTCTCGTCATGGTATTAAAGCCAGACCTGTTCCTGTTCTTGGTTCACTCAGCATTGGGCCCCACTGTTTGTTGTTCGCTCTCCAATTATCCAGTCCTGAGCGTGTGAGTAATGTTAAATGTTCCACATTGGTGGTGAAAATGTGTTGTTGTCTCCTTATATGGTCCTGTGCGATTCTTACTTCATGAGTTTTGGAGTTGATTTAGGCTCAAGACTCATTTCTTATCAAGTTGTTTCTTCTTTATTATAGTGAATACACTTTTTAGAGGGAAACGAATTTTCTGGCCAGCTGCTAATTCTCTTATATTGTCAGTGTGTACTCTGCTTTTCCTTTATTGAAAGATTTTTTGAAAATGGGATTTGGTCAGATTTACGAATCAAGCATGTAGTGGTCTAAGACCTGGTTGCTGCTTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGGATGTCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTCAAAAAGTTACTGAACAACAGAGAATAGAGTTTTACACACTTCAGATCTTCCACAGAACATTTCTGTCAGTATTTGTGCCAACAAAGGCTGTTACTGTTTAAACGGTGTATGGCCAATTGGCTCTCTTTTACTTCTGAAGTCATGTCATCTCCTCCTTGCACTTGTCAATGTTGTCTACTTGTTTTTATTTGACTAGTGCAACTGTAGTTGTTGATTACGGTAATTTCATTCTTATAACTTCATTTGTACTTTTTCTTATTGTTTCAAGTCATTCTGATGTATTCTGTAGGTATTTTCTCATTAATTACCATGAGCTGTAACTTAACCCTGTTCTTTGATATTATAGTTTTTCTTTTTACTTTGTTCTCAATGACAATATCATTCTCGTGGCATTTCAGATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAGGTTCTCTCTCTCTCTCACTCACACACGCACACAAAAAAAATTAAGGATTTGCATGTGTGGTTGCGTATGACTTAATTATCATAATATCCTACCTGTTGCTTGATTCTTCCGTTCTTGAGTGTGGGGTGTCTCTAATTCTGCTTCCGTCTTGCAGGGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTATATATTACCGGAGTTTGATT--AGGTCCGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAAACTT-AAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</genome_strand>
        <mrna_strand>GCTAGATGACCT-GAACCAGAAGAGGCAGTGGCGATCATGTC-TCTTTNGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAG..........................................................................................................................................................GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTGATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTGTATATTACCGGAGTTTGATTAGAGGTCAGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACCCTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATTGACAGTAGATTACACCCTGATTAGCACAGAGAGATACATGAACTTAAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345275" ref_strand="+" ref_description="SGN-U345275        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G35710.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to many predicted protein kinases | chr1:13222152-13225893 FORWARD | Aliases: F14D7.1, F14D7_1 (evalue: 6e-35, score=144) genbank/nr: Leucine(evalue: 8e-38, score=160)">
      <seq>tcaacttgtgggggaataattttgacatcgattcaacattgagcttccttgaatcattgacaaactgtaggaatctaagagtactcacgcttggtggtaatccgttggatggtgttttgcctgcatctgttgggaatttctcaaactgcttgcaaatatgtgaagcatctaaatgtaaactgaatggtgtcatttcaaaacaaattactaatcttactggattgacaaggatgagtctgtcgaacaatcagttgataggccatattccaacaacagtgcaaggaatgctgaaccttcaagaactttacctatgaagcaacaagttagaaggagccataccagatgttatctgcagttgacagtatcttggtgcattagaattgtcagagaatcaattttctagtttcgttccaccatgcttagggaatgttactagtttgaggacactctatctagataacaacaagctggattctagattacctgcaagattggggggacttcaaaacatcatagagttcaatatttcatccaattatttgagtggagaaattccgctagagagcggaaacttgaatggtgcaacactgattgatctgtcaaataattatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="+" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="143629" stop="144845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143929" g_stop="144545" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="+" ref_id="SGN-U345275" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143929" e_stop="144545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</genome_strand>
        <mrna_strand>TCAACTTGTGGGGGAATAATTTTGACATCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGGAATTTCTCAAACTGCTTGCAAATATGTGAAGCATCTAAATGTAAACTGAATGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGCCATATTCCAACAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTATGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTGACAGTATCTTGGTGCATTAGAATTGTCAGAGAATCAATTTTCTAGTTTCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAATGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0054K13-M5sx5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0054K13.2" temp_strand="-" temp_description="C06HBa0054K13.2  AC211032.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0054K13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="151642" stop="150583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151342" g_stop="150884" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0054K13.2" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0054K13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151342" e_stop="150884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAA-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTA-AAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="198" PGL_stop="970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="198" e_stop="970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="198" e_stop="970" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="198" stop="970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAAAGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAGTAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGCAGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTACAGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTGATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTTATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTATCAGCAGTTG</gDNA_template>
            <first_frame> R  K  N  V  *  N  *  N  R  V  F  S  I  K  I  R  K  N  G  V  D  I  L  S  L  M  L  W  I  S  L  L  E  R  F  L  V  E  N  I  C  K  V  Y  Q  K  R  R  F  V  W  L  K  H  D  *  Q  L  *  C  T  G  H  V  F  V  V  I  S  S  H  L  L  P  H  L  Q  D  A  T  A  N  D  L  P  K  G  D  F  D  V  Q  G  F  P  T  M  Y  F  R  S  A  S  G  N  L  S  Q  Y  N  G  E  R  T  K  E  A  I  I  E  F  I  E  K  N  R  G  K  P  A  Q  S  D  S  A  K  V  D  S  A  K  D  E  L  *  R  F  G  S  L  P  *  S  I  N  C  D  I  C  H  Y  W  F  F  V  L  Q  *  L  *  F  I  L  I  S  S  Y  S  G  L  *  E  H  C  V  L  V  D  S  S  F  V  G  S  I  V  F  L  V  N  S  T  S  H  R  T  T  A  L  S  Q  R  F  R  C  S  F  W  S  F  S  A  P  I  K  R  L  Y  V  S  I  L  C  I  E  C  S  W  I  M  S  L  Y  Y  I  Y  *  E  V  L  Q  L  Y  S  I  S  S   </first_frame>
            <second_frame>  E  R  M  C  R  I  R  I  G  F  L  V  *  K  S  E  R  T  G  W  T  F  Y  L  *  C  Y  G  F  R  C  *  R  D  F  *  *  K  T  S  V  K  C  I  K  K  E  G  L  Y  G  L  N  T  I  S  S  C  N  A  Q  D  M  Y  L  L  S  F  P  L  T  C  F  L  I  Y  R  T  Q  P  Q  M  I  S  R  K  V  T  L  M  F  R  D  S  L  L  C  T  S  D  P  P  L  V  T  C  H  S  T  M  V  R  E  Q  K  R  L  S  S  N  S  S  R  R  I  V  A  S  L  L  S  Q  T  L  P  K  S  I  Q  Q  R  M  N  F  R  G  L  V  L  F  L  K  A  S  I  V  I  S  A  I  I  G  S  L  C  Y  S  N  C  N  L  Y  *  S  P  L  I  Q  D  S  R  N  I  V  Y  W  W  I  Q  V  L  L  E  A  L  C  F  W  *  I  R  P  P  T  G  L  L  L  S  P  N  A  S  V  V  V  F  G  A  F  Q  R  Q  *  N  G  C  M  Y  P  F  C  V  S  N  V  A  G  L  *  V  Y  I  I  S  I  E  K  F  S  N  F  I  V  S  A  V  </second_frame>
            <third_frame>   K  E  C  V  E  L  E  S  G  F  *  Y  K  N  Q  K  E  R  G  G  H  F  I  F  D  V  M  D  F  V  V  R  E  I  F  S  R  K  H  L  *  S  V  S  K  K  K  V  C  M  A  *  T  R  L  A  V  V  M  H  R  T  C  I  C  C  H  F  L  S  P  A  S  S  F  T  G  R  N  R  K  *  S  P  E  R  *  L  *  C  S  G  I  P  Y  Y  V  L  Q  I  R  L  W  *  L  V  T  V  Q  W  *  E  N  K  R  G  Y  H  R  I  H  R  E  E  S  W  Q  A  C  S  V  R  L  C  Q  S  R  F  S  K  G  *  T  L  E  V  W  F  S  S  L  K  H  Q  L  *  Y  L  P  L  L  V  L  C  A  T  V  I  V  I  Y  I  D  L  L  L  F  R  T  L  G  T  L  C  T  G  G  F  K  F  C  W  K  H  C  V  S  G  E  F  D  L  P  P  D  Y  C  S  L  P  T  L  P  L  *  F  L  E  L  F  S  A  N  K  T  V  V  C  I  H  F  V  Y  R  M  *  L  D  Y  E  F  I  L  Y  L  L  R  S  S  P  T  L  *  Y  Q  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="310" stop="717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSVKCIKKEGLYGLNTISSCNAQDMYLLSFPLTCFLIYRTQPQMISRKVTLMFRDSLLCTSDPPLVTCHSTMVREQKRLSSNSSRRIVASLLSQTLPKSIQQRMNFRGLVLFLKASIVISAIIGSLCYSNCNLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="741" stop="938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHCVLVDSSFVGSIVFLVNSTSHRTTALSQRFRCSFWSFSAPIKRLYVSILCIECSWIMSLYYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27865" PGL_stop="26855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27865" e_stop="27463"/>
            <exon e_start="26963" e_stop="26855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="0.817"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27865" e_stop="27463" e_length="403"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="27462" i_stop="26964" i_length="499"/>
          </intron>
          <exon e_serial="2" e_score="0.817">
            <gDNA_exon_boundary e_start="26963" e_stop="26855" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27865" stop="27463"/>
              <exon start="26963" stop="26855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACTATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAGAAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTTTTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG : ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACTTTGGTTTGAG</gDNA_template>
            <first_frame> L  Q  M  K  I  E  L  H  I  *  G  V  S  W  E  K  K  K  Q  T  M  L  F  E  L  S  *  N  I  P  R  C  F  *  R  V  *  T  I  *  K  T  S  A  C  *  L  S  P  Y  *  S  L  A  F  S  L  Q  S  L  F  S  L  C  V  S  F  N  A  A  E  L  P  L  S  E  V  C  S  L  A  L  I  G  V  T  K  I  S  F  L  S  V  E  L  E  A  K  F  V  T  S  L  V  F  S  C  L  L  L  L  V  V  L  E  D  T  I  V  V  L  F  G  D  S  T  E  T  S  L  R  L  I  L   : D  S  T  N  E  V  L  D  I  L  G  L  G  L  S  P  I  C  S  S  L  S  K  F  N  R  G  P  *  P  V  E  D  F  G  L   </first_frame>
            <second_frame>  Y  K  *  K  L  S  Y  T  F  K  E  S  H  G  K  R  R  N  K  L  C  C  L  N  S  P  K  I  S  L  G  V  F  E  E  S  E  Q  Y  R  K  Q  V  H  V  N  Y  P  L  I  S  L  *  P  S  L  Y  N  L  F  F  H  Y  V  F  P  L  M  L  Q  N  Y  P  Y  L  K  F  V  H  L  H  *  *  E  *  L  K  F  H  S  C  Q  L  N  W  K  Q  N  L  *  H  H  L  S  F  L  V  C  C  C  W  W  C  W  K  T  P  *  W  S  C  L  V  I  L  Q  R  L  L  *  G  S  F  *  :  T  Q  L  M  K  F  *  T  F  L  D  L  D  F  H  L  F  V  P  P  C  Q  S  S  T  E  G  L  D  L  L  R  T  L  V  *  </second_frame>
            <third_frame>   T  N  E  N  *  V  T  H  L  R  S  L  M  G  K  E  E  T  N  Y  V  V  *  T  L  L  K  Y  P  S  V  F  L  K  S  L  N  N  I  E  N  K  C  M  L  T  I  P  L  L  V  F  S  L  L  F  T  I  S  F  F  T  M  C  F  L  *  C  C  R  I  T  L  I  *  S  L  F  T  C  T  N  R  S  D  *  N  F  I  L  V  S  *  T  G  S  K  I  C  N  I  T  C  L  F  L  F  V  V  V  G  G  V  G  R  H  H  S  G  L  V  W  *  F  Y  R  D  F  F  E  A  H  F  R :   L  N  *  *  S  S  R  H  S  W  T  W  T  F  T  Y  L  F  L  P  V  K  V  Q  Q  R  A  L  T  C  *  G  L  W  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27712" stop="27463"/>
                    <exon start="26963" stop="26878"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLAFSLQSLFSLCVSFNAAELPLSEVCSLALIGVTKISFLSVELEAKFVTSLVFSCLLLLVVLEDTIVVLFGDSTETSLRLILDSTNEVLDILGLGLSPICSSLSKFNRGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27251" e_stop="26966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27251" e_stop="26966" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27251" stop="26966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGAAAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCGAAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATCCTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTATATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGC</gDNA_template>
            <first_frame> *  L  R  I  T  L  F  S  Q  A  Q  K  Y  D  I  M  N  V  T  R  K  D  H  L  F  M  L  F  Q  R  E  G  K  F  Y  V  L  I  S  A  K  I  G  E  P  I  L  *  R  V  V  W  F  I  I  L  T  K  I  I  L  P  Y  C  Q  Y  I  *  L  K  *  L  K  V  S  F  D  P  V  Y  I  N  V  P  F  *  H  L  Y  D  E  V  G  L  M  </first_frame>
            <second_frame>  D  S  V  L  H  Y  F  H  K  H  K  N  M  I  *  *  M  *  Q  E  K  T  I  Y  L  C  C  F  K  E  R  V  S  F  M  Y  *  *  V  R  K  *  E  N  L  F  S  K  G  W  F  G  L  S  Y  *  Q  K  *  S  Y  H  T  V  S  I  Y  N  L  S  N  *  R  Y  H  L  I  Q  S  I  *  T  Y  R  F  S  I  C  M  M  K  L  V  *  C </second_frame>
            <third_frame>   T  P  Y  Y  I  I  F  T  S  T  K  I  *  Y  N  E  C  N  K  K  R  P  S  I  Y  A  V  S  K  R  G  *  V  L  C  T  D  K  C  E  N  R  R  T  Y  S  L  K  G  G  L  V  Y  H  T  N  K  N  N  P  T  I  L  S  V  Y  I  T  *  V  I  E  G  I  I  *  S  S  L  Y  K  R  T  V  L  A  S  V  *  *  S  W  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0054K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29969" PGL_stop="37170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29969" e_stop="30247"/>
            <exon e_start="31699" e_stop="31903"/>
            <exon e_start="31997" e_stop="32087"/>
            <exon e_start="32785" e_stop="32930"/>
            <exon e_start="33273" e_stop="33516"/>
            <exon e_start="34308" e_stop="34412"/>
            <exon e_start="34492" e_stop="34674"/>
            <exon e_start="35410" e_stop="35611"/>
            <exon e_start="36440" e_stop="37170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29969" e_stop="30247" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30248" i_stop="31698" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31699" e_stop="31903" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.885">
            <gDNA_intron_boundary i_start="31904" i_stop="31996" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31997" e_stop="32087" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32088" i_stop="32784" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32930" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32931" i_stop="33272" i_length="342"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33516" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="33517" i_stop="34307" i_length="791"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34308" e_stop="34412" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34413" i_stop="34491" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34492" e_stop="34674" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.921" acc_prob="0.825">
            <gDNA_intron_boundary i_start="34675" i_stop="35409" i_length="735"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35410" e_stop="35611" e_length="202"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35612" i_stop="36439" i_length="828"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="36440" e_stop="37170" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29969" stop="30247"/>
              <exon start="31699" stop="31903"/>
              <exon start="31997" stop="32087"/>
              <exon start="32785" stop="32930"/>
              <exon start="33273" stop="33516"/>
              <exon start="34308" stop="34412"/>
              <exon start="34492" stop="34674"/>
              <exon start="35410" stop="35611"/>
              <exon start="36440" stop="37170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316037" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCCAGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAATAAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAGATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCAGTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG : GGAGTATACTCAGTGTTGGAGGCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTCAAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTCATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCACCAG : AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTTGTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAAGATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCACAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAAG : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTATAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCATATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATGGAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGATTTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATCGCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTTATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACCTCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGTTGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGGATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACGATATAAAATATTCAACTTATTTTAGC</gDNA_template>
            <first_frame> L  F  H  L  S  P  F  S  S  F  L  N  N  P  T  F  K  F  F  P  S  Y  Y  *  H  K  Y  L  R  K  I  S  T  F  L  L  N  T  C  N  K  Q  K  W  I  L  C  T  R  T  H  Q  L  L  L  R  K  E  *  K  I  C  C  L  G  *  H  L  K  K  K  *  A  K  *  L  R  S  N  A  V  L  L  P  P  L  S  L  L  T  F  L  *  :  G  V  Y  S  V  L  E  A  V  R  H  L  R  M  L  H  R  K  L  G  Q  I  W  L  T  D  F  K  R  L  R  W  N  H  G  L  G  F  R  F  F  M  E  L  T  L  F  M  A  I  T  M  F  M  V  L  P  F  F  H  K  M  W  A  L  E  P  P   : E  M  Q  T  W  F  R  R  L  G  L  *  L  L  L  K  S  G  L  V  A  L  T  I  L  L  L  P  V  L  L :   Y  V  E  I  P  G  G  E  D  A  M  R  V  M  A  K  T  P  N  L  L  G  R  *  P  Q  L  S  Q  A  C  K  G  N  H  L  L  D  T  P  K  T  I  L  F  *  L  E   : E  T  R  L  L  P  V  Q  S  T  L  L  E  M  G  V  L  T  E  V  *  M  R  E  I  P  Y  H  R  M  K  I  *  R  E  Y  I  F  P  H  I  L  T  V  F  L  R  E  F  A  Q  *  W  H  P  T  L  N  G  M  E  A  T  C  I  L  A  T  F  F  L  L  K  F  *  K  G  S  S  D  L  R :   A  L  L  F  L  I  P  K  E  L  T  D  F  S  I  L  M  D  L  T  M  T  K  V  F  W  Q  Q  S  M  Q  G  L  T  W :   *  W  F  L  F  G  I  N  Y  F  S  I  I  *  N  I  L  W  N  L  G  I  F  Q  *  P  E  L  M  M  L  L  K  G  S  *  E  L  S  L  F  P  E  L  L  R  T  L  *  V  I  G  H  C  W  I  P  L  V  V  I :   N  I  A  N  *  H  V  K  Q  F  A  N  H  W  F  F  *  R  M  G  R  M  *  Q  N  H  F  F  R  *  I  G  R  Q  R  E  F  L  *  Q  E  N  M  L  T  T  L  D  S  N  V  E  G  G  L  K  H  G  K  E  W  A  E  E  S  R  L  :  V  Q  L  F  W  K  L  L  K  M  L  L  E  G  K  Q  N  W  Y  M  K  K  I  L  H  Q  T  P  L  R  V  K  T  S  L  I  A  L  *  L  L  V  N  L  P  I  V  K  A  V  E  T  A  K  T  S  E  F  L  L  A  E  K  N  *  *  A  W  L  Q  T  E  F  Q  R  W  *  Y  *  S  P  E  G  L  Y  I  *  S  L  R  F  W  R  K  W  M  P  S  L  L  H  G  Y  R  A  L  R  E  L  V  S  L  M  S  Y  S  E  I  L  N  S  M  E  P  S  L  *  H  G  L  R  V  *  I  N  Y  P  C  I  K  N  R  T  P  M  N  L  S  F  H  S  A  T  D  *  Q  V  K  T  R  *  S  R  R  D  V  S  K  K  G  L  V  K  *  T  C  L  *  R  C  G  L  S  E  R  L  Y  E  A  L  C  N  L  L  C  T  L  Y  H  L  V  S  G  I  *  C  Y  I  K  S  K  *  L  Y  I  M  Y  Y  Y  Y  H  M  *  T  R  K  N  A  *  Q  F  H  L  I  T  I  *  N  I  Q  L  I  L   </first_frame>
            <second_frame>  Y  S  T  Y  H  H  F  L  H  F  S  I  I  P  L  L  S  S  F  P  V  T  I  N  T  N  I  *  E  K  S  Q  L  F  C  *  I  L  V  I  S  R  N  G  F  C  V  Q  E  P  I  S  S  Y  *  G  K  S  K  R  F  V  V  S  D  D  T  *  R  K  N  R  P  N  D  S  D  R  T  Q  C  C  Y  P  L  C  H  Y  *  P  F  Y  R :   E  Y  T  Q  C  W  R  Q  C  A  I  *  G  C  S  I  G  S  L  G  R  Y  G  *  R  I  S  K  G  C  A  G  I  T  A  W  D  S  A  S  L  W  S  *  R  Y  S  W  Q  *  Q  C  L  W  C  Y  R  F  S  T  K  C  G  P  W  S  H  Q  :  R  C  R  L  G  S  E  D  W  D  C  D  C  S  *  S  Q  G  L  W  H  *  L  Y  F  C  S  L  C  C   : C  M  *  R  S  Q  V  G  K  M  L  *  E  L  W  R  R  H  R  T  Y  *  E  D  D  L  N  C  H  R  L  A  R  A  T  T  S  W  I  P  P  K  L  S  F  S  S  W  K  :  R  Q  G  C  C  L  C  K  A  L  C  W  R  W  G  Y  *  P  R  Y  K  *  G  K  Y  H  I  I  V  *  R  S  R  E  N  T  Y  S  P  I  Y  *  L  Y  F  S  G  S  L  H  S  N  G  I  L  L  *  M  E  W  K  P  P  A  F  *  P  L  S  S  Y  *  S  F  E  R  E  A  R  I  *   : G  L  C  Y  F  *  F  R  R  N  *  P  I  F  P  S  S  W  I  *  L  *  P  K  Y  F  G  S  N  Q  C  R  D  *  H   : G  D  G  S  F  S  V  S  I  I  S  R  S  F  E  I  S  C  G  I  W  E  Y  S  N  D  Q  N  *  *  C  C  *  K  D  P  E  S  *  V  C  F  R  S  F  *  E  P  S  E  *  *  V  I  V  G  Y  R  W  L  S   : S  T  S  R  I  S  T  *  S  S  S  Q  I  T  G  S  S  K  E  W  E  G  C  N  K  T  I  S  S  A  R  *  E  G  K  E  N  S  C  S  R  K  T  C  *  R  P  W  I  P  M  W  R  V  D  *  N  M  G  R  N  G  R  K  N  H  D  W :   Y  N  Y  S  G  S  Y  *  R  C  C  W  R  G  N  R  T  G  I  *  R  K  S  F  T  R  H  L  C  E  S  R  L  L  L  L  H  C  S  C  W  *  T  S  L  L  *  K  R  W  R  Q  P  R  P  Q  N  S  S  W  R  R  R  T  N  K  L  G  C  R  Q  S  S  N  V  G  D  I  D  L  R  K  A  F  T  Y  R  A  F  D  S  G  E  N  G  C  L  R  C  C  M  V  T  G  H  *  G  N  W  Y  H  *  C  H  I  R  R  F  *  I  P  W  N  P  P  Y  D  M  V  *  E  C  R  S  I  T  P  A  S  R  T  E  L  L  *  T  S  L  S  I  R  L  R  I  N  K  *  K  Q  G  D  L  D  E  M  C  R  R  K  V  *  *  N  R  H  V  Y  K  D  A  D  Y  Q  K  D  C  M  K  L  Y  A  T  S  C  V  L  C  T  I  W  S  L  A  Y  D  V  T  L  S  P  N  N  Y  I  L  C  T  I  I  T  I  C  E  Q  G  K  M  R  N  S  F  I  *  *  R  Y  K  I  F  N  L  F  *  </second_frame>
            <third_frame>   I  P  L  I  T  I  F  F  I  S  Q  *  S  H  F  *  V  L  S  Q  L  L  L  T  Q  I  F  K  K  N  L  N  F  F  V  E  Y  L  *  *  A  E  M  D  F  V  Y  K  N  P  S  A  L  I  E  E  R  V  K  D  L  L  S  R  M  T  L  E  E  K  I  G  Q  M  T  Q  I  E  R  S  V  A  T  P  S  V  I  T  D  L  S  I   : G  S  I  L  S  V  G  G  S  A  P  F  E  D  A  P  S  E  A  W  A  D  M  V  D  G  F  Q  K  A  A  L  E  S  R  L  G  I  P  L  L  Y  G  V  D  A  I  H  G  N  N  N  V  Y  G  A  T  V  F  P  Q  N  V  G  L  G  A  T  R :   D  A  D  L  V  Q  K  I  G  I  V  T  A  L  E  V  R  A  C  G  I  N  Y  T  F  A  P  C  V  A  :  V  C  R  D  P  R  W  G  R  C  Y  E  S  Y  G  E  D  T  E  L  I  R  K  M  T  S  I  V  T  G  L  Q  G  Q  P  P  P  G  Y  P  Q  N  Y  P  F  L  A  G  R :   D  K  V  V  A  C  A  K  H  F  V  G  D  G  G  T  D  R  G  I  N  E  G  N  T  I  S  S  Y  E  D  L  E  R  I  H  I  P  P  Y  I  D  C  I  S  Q  G  V  C  T  V  M  A  S  Y  S  K  W  N  G  S  H  L  H  S  S  H  F  L  L  T  E  V  L  K  G  K  L  G  F  K  :  G  F  V  I  S  D  S  E  G  I  D  R  F  F  H  P  H  G  S  N  Y  D  Q  S  I  L  A  A  I  N  A  G  I  D  M  :  V  M  V  P  F  R  Y  Q  L  F  L  D  H  L  K  Y  L  V  E  S  G  N  I  P  M  T  R  I  D  D  A  V  E  R  I  L  R  V  K  F  V  S  G  A  F  E  N  P  L  S  D  R  S  L  L  D  T  V  G  C  H  :  Q  H  R  E  L  A  R  E  A  V  R  K  S  L  V  L  L  K  N  G  K  D  V  T  K  P  F  L  P  L  D  R  K  A  K  R  I  L  V  A  G  K  H  A  D  D  L  G  F  Q  C  G  G  W  T  K  T  W  E  G  M  G  G  R  I  T  I   : G  T  T  I  L  E  A  I  K  D  A  V  G  G  E  T  E  L  V  Y  E  E  N  P  S  P  D  T  F  A  S  Q  D  F  S  Y  C  I  V  V  V  G  E  P  P  Y  C  E  S  G  G  D  S  Q  D  L  R  I  P  L  G  G  E  E  L  I  S  L  V  A  D  R  V  P  T  L  V  I  L  I  S  G  R  P  L  H  I  E  P  S  I  L  E  K  M  D  A  F  V  A  A  W  L  P  G  T  E  G  T  G  I  T  D  V  I  F  G  D  F  E  F  H  G  T  L  P  M  T  W  F  K  S  V  D  Q  L  P  L  H  Q  E  Q  N  S  Y  E  P  L  F  P  F  G  Y  G  L  T  S  K  N  K  V  I  *  T  R  C  V  E  E  R  F  S  E  I  D  M  S  I  K  M  R  T  I  R  K  T  V  *  S  F  M  Q  P  L  V  Y  F  V  P  F  G  L  W  H  M  M  L  H  *  V  Q  I  I  I  Y  Y  V  L  L  L  P  Y  V  N  K  E  K  C  V  T  V  S  F  N  N  D  I  K  Y  S  T  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30091" stop="30247"/>
                    <exon start="31699" stop="31903"/>
                    <exon start="31997" stop="32087"/>
                    <exon start="32785" stop="32930"/>
                    <exon start="33273" stop="33516"/>
                    <exon start="34308" stop="34412"/>
                    <exon start="34492" stop="34674"/>
                    <exon start="35410" stop="35611"/>
                    <exon start="36440" stop="36927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEMDFVYKNPSALIEERVKDLLSRMTLEEKIGQMTQIERSVATPSVITDLSIGSILSVGGSAPFEDAPSEAWADMVDGFQKAALESRLGIPLLYGVDAIHGNNNVYGATVFPQNVGLGATRDADLVQKIGIVTALEVRACGINYTFAPCVAVCRDPRWGRCYESYGEDTELIRKMTSIVTGLQGQPPPGYPQNYPFLAGRDKVVACAKHFVGDGGTDRGINEGNTISSYEDLERIHIPPYIDCISQGVCTVMASYSKWNGSHLHSSHFLLTEVLKGKLGFKGFVISDSEGIDRFFHPHGSNYDQSILAAINAGIDMVMVPFRYQLFLDHLKYLVESGNIPMTRIDDAVERILRVKFVSGAFENPLSDRSLLDTVGCHQHRELAREAVRKSLVLLKNGKDVTKPFLPLDRKAKRILVAGKHADDLGFQCGGWTKTWEGMGGRITIGTTILEAIKDAVGGETELVYEENPSPDTFASQDFSYCIVVVGEPPYCESGGDSQDLRIPLGGEELISLVADRVPTLVILISGRPLHIEPSILEKMDAFVAAWLPGTEGTGITDVIFGDFEFHGTLPMTWFKSVDQLPLHQEQNSYEPLFPFGYGLTSKNKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40371" PGL_stop="43546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40371" e_stop="40438"/>
            <exon e_start="41756" e_stop="42076"/>
            <exon e_start="42211" e_stop="42334"/>
            <exon e_start="42820" e_stop="43546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40371" e_stop="40438" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40439" i_stop="41755" i_length="1317"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41756" e_stop="42076" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.710">
            <gDNA_intron_boundary i_start="42077" i_stop="42210" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42211" e_stop="42334" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42335" i_stop="42819" i_length="485"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42820" e_stop="43546" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40371" stop="40438"/>
              <exon start="41756" stop="42076"/>
              <exon start="42211" stop="42334"/>
              <exon start="42820" stop="43476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42993" stop="43546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCACGGGTTGAG : AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCACTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTGCTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATGGTGGATCCATGTCCTGGGGAAGGGACCAG : GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCAAAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG : AGAATGAGAAAGTAGAAGGTGAGCAACTACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCAAAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAACCCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCTCTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGACAGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACCATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCTAGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGATGTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTACACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAATCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGATTATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATTGGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA</gDNA_template>
            <first_frame> M  K  Q  G  T  Q  *  L  G  L  L  L  Q  I  F  F  P  G  S  H  G  L  R :   S  *  A  Y  C  Q  D  L  E  G  L  *  D  L  L  I  F  L  Q  P  M  R  T  D  I  C  S  L  L  M  N  C  V  G  G  W  S  L  F  L  V  D  V  L  R  K  K  Y  C  T  L  D  V  Y  L  L  V  L  L  M  I  Y  A  E  L  Q  T  W  P  T  R  Q  W  L  N  M  V  L  V  R  P  L  A  L  S  Q  W  Q  H  F  L  E  V  G  W  M  M  V  D  P  C  P  G  E  G  T  R :   G  I  L  L  I  L  F  K  E  R  S  R  L  Y  C  S  L  H  L  I  L  H  S  V  L  Y  V  L  I  P  K  F  L  R  G  W  E  L  N  W  K  :  R  M  R  K  *  K  V  S  N  Y  K  N  G  *  A  W  S  L  H  Q  Q  N  L  I  F  S  *  R  A  K  K  D  L  Y  F  H  C  K  Q  A  L  D  D  R  K  C  K  L  N  P  V  N  R  V  Q  K  R  I  S  N  K  D  F  H  A  F  I  C  A  L  *  G  N  K  A  I  F  L  N  Q  M  G  I  T  C  W  H  P  D  S  V  I  L  H  V  L  V  R  *  I  D  S  Y  L  T  P  T  N  T  I  V  I  Y  H  D  H  R  L  L  T  R  R  E  G  M  R  K  R  S  S  Q  E  F  L  G  S  L  E  V  K  *  K  *  A  R  D  Q  S  D  V  C  W  Y  F  L  L  H  H  L  Y  M  C  P  I  I  L  S  N  Y  T  R  I  N  T  L  I  L  *  Y  T  S  V  L  Q  L  T  K  N  *  S  M  S  N  V  V  G  E  G  V  K  L  C  I  Q  C  N  L  S  D  Y  E  T  K  F  Q  *  V  A  I  I  F  D  L  C  K  I  T  S  I  G  *  G  N  S  D  N  S  L  C  L  W  L  </first_frame>
            <second_frame>  *  S  R  A  R  S  S  W  D  C  C  C  K  S  S  F  R  A  A  T  G  *   : E  A  E  H  I  A  K  I  W  R  G  F  R  I  Y  L  Y  S  S  N  Q  *  G  Q  I  S  A  L  C  *  *  I  A  W  E  V  G  H  S  S  W  W  T  C  C  G  R  S  I  V  L  W  T  C  I  Y  W  C  S  *  *  Y  T  Q  S  Y  R  H  G  L  Q  G  S  G  *  I  W  S  *  S  D  H  W  P  Y  L  S  G  N  T  F  W  R  W  D  G  *  W  W  I  H  V  L  G  K  G  P   : G  A  S  C  *  S  C  S  K  R  G  Q  G  F  T  A  V  C  T  *  Y  C  T  L  C  C  T  C  *  S  Q  S  S  *  G  V  G  S  S  I  G  R :   E  *  E  S  R  R  *  A  T  T  R  M  V  E  H  G  R  C  T  S  R  T  *  F  F  H  K  G  Q  R  R  I  F  T  S  T  A  S  R  L  W  M  T  E  S  A  S  L  T  Q  S  T  E  Y  K  N  E  F  R  I  R  I  S  T  P  S  S  V  L  S  R  E  T  K  L  Y  S  *  T  R  W  A  S  L  A  G  I  Q  T  A  *  F  C  M  C  *  *  G  K  L  T  A  T  *  L  L  Q  T  P  L  L  Y  T  T  I  T  D  C  *  L  E  E  K  A  C  A  K  D  L  A  K  S  F  L  V  L  *  R  *  N  E  N  R  L  V  I  R  V  M  S  V  G  I  F  F  Y  I  T  C  T  C  A  Q  L  F  L  V  I  T  Q  E  S  I  P  *  Y  C  N  I  H  L  Y  C  S  L  Q  R  T  N  P  C  L  M  L  W  E  K  V  *  N  C  V  Y  N  V  I  F  L  I  M  R  Q  S  F  S  R  L  P  *  S  L  T  C  V  K  L  Q  V  L  D  E  V  I  V  T  I  P  C  A  C  G  * </second_frame>
            <third_frame>   E  A  G  H  A  V  V  G  T  A  V  A  N  L  L  S  G  Q  P  R  V  E  :  K  L  S  I  L  P  R  S  G  G  A  L  G  F  T  Y  I  P  P  T  N  E  D  R  Y  L  L  F  V  D  E  L  R  G  R  L  V  T  L  L  G  G  R  A  A  E  E  V  L  Y  S  G  R  V  S  T  G  A  L  D  D  I  R  R  A  T  D  M  A  Y  K  A  V  A  E  Y  G  L  S  Q  T  I  G  P  I  S  V  A  T  L  S  G  G  G  M  D  D  G  G  S  M  S  W  G  R  D  Q  :  G  H  L  V  D  L  V  Q  R  E  V  K  A  L  L  Q  S  A  L  D  I  A  L  C  V  V  R  A  N  P  K  V  L  E  G  L  G  A  Q  L  E   : E  N  E  K  V  E  G  E  Q  L  Q  E  W  L  S  M  V  V  A  P  A  E  L  N  F  F  I  K  G  K  E  G  S  L  L  P  L  Q  A  G  S  G  *  Q  K  V  Q  A  *  P  S  Q  Q  S  T  K  T  N  F  E  *  G  F  P  R  L  H  L  C  S  L  G  K  Q  S  Y  I  P  E  P  D  G  H  H  L  L  A  S  R  Q  R  D  F  A  C  V  S  K  V  N  *  Q  L  L  N  S  Y  K  H  H  C  Y  I  P  R  S  Q  I  V  N  S  K  R  R  H  A  Q  K  I  *  P  R  V  S  W  F  S  R  G  E  M  K  I  G  S  *  S  E  *  C  L  L  V  F  S  S  T  S  L  V  H  V  P  N  Y  S  *  *  L  H  K  N  Q  Y  L  N  I  V  I  Y  I  C  T  A  A  Y  K  E  L  I  H  V  *  C  C  G  R  R  C  E  T  V  Y  T  M  *  S  F  *  L  *  D  K  V  S  V  G  C  H  N  L  *  L  V  *  N  Y  K  Y  W  M  R  *  *  *  Q  F  L  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40373" stop="40438"/>
                    <exon start="41756" stop="42076"/>
                    <exon start="42211" stop="42334"/>
                    <exon start="42820" stop="42947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAGHAVVGTAVANLLSGQPRVEKLSILPRSGGALGFTYIPPTNEDRYLLFVDELRGRLVTLLGGRAAEEVLYSGRVSTGALDDIRRATDMAYKAVAEYGLSQTIGPISVATLSGGGMDDGGSMSWGRDQGHLVDLVQREVKALLQSALDIALCVVRANPKVLEGLGAQLEENEKVEGEQLQEWLSMVVAPAELNFFIKGKEGSLLPLQAGSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47725" PGL_stop="46918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47725" e_stop="46918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="47725" e_stop="46918" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47725" stop="46918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  R  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  R  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  I  S  *  R  V  Y  L  V  R  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  T  L  V  L  P  I  S  T  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  S  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  *  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  V  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  *  A  E  G  F  T  *  C  G  V  *  D  E  G  S  G  S  C  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  *  P  *  C  C  Q  Y  P  P  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  A  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  H  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  N  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  V  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47723" stop="46920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMAKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIHKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDNPSAANIHLTAMFAPQSEEEKEYMSRVPYASVVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48384" PGL_stop="47736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48384" e_stop="47736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="48384" e_stop="47736" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48384" stop="47736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  C  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  Y  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  C  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  A  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  I  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  V  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  M  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  *  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48383" stop="47736"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRCGFEDMVGYALQVAEEVDASEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYIARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="60006" PGL_stop="59504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60006" e_stop="59504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60006" e_stop="59504" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60006" stop="59504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAGCTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTACTAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTGTTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTGATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTGAGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAAGGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGACCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTGGTGGATTCATGAACTCTGCACTG</gDNA_template>
            <first_frame> G  K  I  I  G  G  G  P  R  A  G  N  *  G  G  N  R  *  F  K  L  K  K  L  G  F  C  Y  C  N  W  G  L  *  C  L  L  *  D  Y  *  D  P  V  C  H  Y  P  G  R  I  L  E  L  R  Q  C  L  *  L  F  H  I  V  S  F  *  V  R  *  I  V  I  R  C  R  K  L  R  L  M  V  Y  I  *  C  S  N  *  R  V  K  *  V  V  V  *  *  R  L  R  L  *  M  *  M  K  M  E  I  V  S  C  K  I  L  R  Q  *  *  G  V  *  L  L  Q  R  K  L  C  I  L  P  R  G  R  V  I  *  R  P  L  M  R  K  C  L  R  M  M  L  S  L  V  L  P  I  N  G  L  V  D  S  *  T  L  H   </first_frame>
            <second_frame>  E  R  *  L  V  V  V  Q  G  Q  E  I  E  V  G  T  D  S  S  S  S  R  N  W  G  F  V  I  A  I  G  D  C  D  V  C  Y  E  I  T  K  T  R  F  A  I  T  R  V  G  S  *  S  S  D  N  V  C  N  C  S  I  *  *  V  F  E  *  D  K  *  *  S  G  A  E  S  *  G  *  W  C  T  Y  N  V  Q  I  E  E  *  S  E  *  *  C  N  R  D  *  G  C  E  C  E  *  K  W  K  *  *  V  A  R  F  *  G  S  D  K  E  C  N  S  Y  K  E  N  C  V  Y  Y  H  E  A  E  *  Y  K  D  P  L  *  E  N  A  *  E  *  C  *  V  W  F  S  R  *  T  V  W  W  I  H  E  L  C  T  </second_frame>
            <third_frame>   K  D  N  W  W  W  S  K  G  R  K  L  R  W  E  P  I  V  Q  A  Q  E  I  G  V  L  L  L  Q  L  G  I  V  M  F  V  M  R  L  L  R  P  G  L  P  L  P  G  S  D  P  R  A  P  T  M  F  V  T  V  P  Y  S  E  F  L  S  K  I  N  S  N  Q  V  Q  K  V  E  V  D  G  V  H  I  M  F  K  L  K  S  E  V  S  S  S  V  I  E  T  E  V  V  N  V  N  E  N  G  N  S  K  L  Q  D  S  E  A  V  I  R  S  V  T  P  T  K  K  I  V  Y  T  T  T  R  P  S  D  I  K  T  P  Y  E  K  M  L  E  N  D  V  E  F  G  S  P  D  K  R  S  G  G  F  M  N  S  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60004" stop="59504"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDNWWWSKGRKLRWEPIVQAQEIGVLLLQLGIVMFVMRLLRPGLPLPGSDPRAPTMFVTVPYSEFLSKINSNQVQKVEVDGVHIMFKLKSEVSSSVIETEVVNVNENGNSKLQDSEAVIRSVTPTKKIVYTTTRPSDIKTPYEKMLENDVEFGSPDKRSGGFMNSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68768" PGL_stop="71345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68768" e_stop="68936"/>
            <exon e_start="70113" e_stop="70143"/>
            <exon e_start="70267" e_stop="70554"/>
            <exon e_start="70653" e_stop="70838"/>
            <exon e_start="70954" e_stop="71079"/>
            <exon e_start="71274" e_stop="71345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.965" e_score="0.873"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68768" e_stop="68936" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68937" i_stop="70112" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70113" e_stop="70143" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70144" i_stop="70266" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70267" e_stop="70554" e_length="288"/>
          </exon>
          <intron i_serial="3" don_prob="0.907" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70555" i_stop="70652" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70653" e_stop="70838" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70839" i_stop="70953" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.873">
            <gDNA_exon_boundary e_start="70954" e_stop="71079" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.965">
            <gDNA_intron_boundary i_start="71080" i_stop="71273" i_length="194"/>
          </intron>
          <exon e_serial="6" e_score="0.931">
            <gDNA_exon_boundary e_start="71274" e_stop="71345" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68768" stop="68936"/>
              <exon start="70113" stop="70143"/>
              <exon start="70267" stop="70554"/>
              <exon start="70653" stop="70838"/>
              <exon start="70954" stop="71079"/>
              <exon start="71274" stop="71345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68781" stop="68936"/>
              <exon start="70113" stop="70143"/>
              <exon start="70267" stop="70418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG : GTGTGGACACTGTAAGAGTCTTGCTCCTGAG : TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAGTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATTTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAATCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAG : GCATTGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATT</gDNA_template>
            <first_frame> Q  K  W  Q  R  V  A  F  W  *  L  F  Q  L  L  L  F  L  Q  F  V  V  F  L  L  R  R  T  N  M  C  *  L  W  T  I  L  T  S  L  R  L  L  L  S  T  T  S  L  L  L  N  S  M  H  L   : G  V  D  T  V  R  V  L  L  L  S :   M  K  K  L  P  Q  S  *  V  V  M  T  L  Q  L  F  *  L  S  M  M  Q  M  M  K  P  I  E  N  F  Q  N  S  T  R  S  R  V  S  Q  L  L  R  Y  *  E  M  E  E  R  K  F  K  T  I  T  V  L  V  K  Q  L  V  L  Y  P  T  *  R  N  K  W  V  L  H  L  L  K  S  S  R  R  K  M  P  Q  T  L  L  M  R  K  V  S  L  L :   L  V  Y  F  Q  T  P  P  E  R  N  S  R  T  I  *  R  *  L  K  N  C  E  A  S  S  I  L  L  T  L  L  M  L  N  T  S  L  G  V  D  Q  S  T  S  P  L  F  V  F  *  S  H  L  M  N  S  L  L  I  L  R :   T  L  M  S  M  Q  W  R  S  S  S  Q  N  L  V  F  L  L  L  L  F  L  T  M  T  Q  T  T  I  L  M  L  T  S  S  S  K  A  P  T  P  R :   H  C  Y  L  *  T  L  A  L  N  L  M  L  L  S  P  S  T  T  M  L  L  *   </first_frame>
            <second_frame>  K  N  G  K  E  W  H  F  G  N  C  F  S  S  C  C  S  C  S  L  W  C  F  C  *  G  E  R  I  C  V  D  F  G  P  F  *  P  H  *  D  C  C  *  A  Q  L  H  C  C  *  I  L  C  T  L  :  V  W  T  L  *  E  S  C  S  *   : V  *  K  S  C  L  R  A  E  *  S  *  P  S  N  C  S  S  *  V  *  C  K  *  *  S  Q  *  R  T  F  K  T  V  R  D  P  G  F  P  N  Y  *  D  I  E  R  W  R  K  E  S  S  R  L  *  R  S  S  *  S  S  W  Y  C  I  L  L  E  E  T  S  G  S  C  I  C  *  N  Q  V  E  G  R  C  H  K  P  Y  *  *  E  K  Y  L  C   : C  W  Y  I  S  R  P  L  R  R  E  I  R  E  L  F  N  A  S  *  K  T  A  R  R  V  R  F  C  S  H  C  *  C  *  T  P  P  S  G  W  T  S  Q  Q  A  H  S  S  S  S  K  A  I  *  *  T  L  C  *  F  *   : G  L  *  C  R  C  N  G  E  V  H  L  R  I  *  Y  S  C  C  Y  Y  F  *  Q  *  P  K  Q  P  S  L  C  *  Q  V  L  R  R  H  Q  R  Q   : G  I  A  I  C  E  L  *  L  *  I  *  C  F  *  V  Q  V  Q  R  C  C  C  D  </second_frame>
            <third_frame>   K  M  A  K  S  G  I  L  V  I  V  S  A  L  V  V  L  A  V  C  G  V  F  A  E  E  N  E  Y  V  L  T  L  D  H  S  N  L  T  E  T  V  A  K  H  N  F  I  V  V  E  F  Y  A  P  W :   C  G  H  C  K  S  L  A  P  E  :  Y  E  K  A  A  S  E  L  S  S  H  D  P  P  I  V  L  A  K  Y  D  A  N  D  E  A  N  R  E  L  S  K  Q  Y  E  I  Q  G  F  P  T  I  K  I  L  R  D  G  G  K  K  V  Q  D  Y  N  G  P  R  E  A  A  G  I  V  S  Y  L  K  K  Q  V  G  P  A  S  A  E  I  K  S  K  E  D  A  T  N  L  I  D  E  K  S  I  F  V  :  V  G  I  F  P  D  P  S  G  E  K  F  E  N  Y  L  T  L  A  E  K  L  R  G  E  F  D  F  A  H  T  V  D  A  K  H  L  P  R  G  G  P  V  N  K  P  T  L  R  L  L  K  P  F  D  E  L  F  V  D  F  E  :  D  F  D  V  D  A  M  E  K  F  I  S  E  S  S  I  P  V  V  T  I  F  D  N  D  P  N  N  H  P  Y  V  N  K  F  F  E  G  T  N  A  K  :  A  L  L  F  V  N  F  S  S  E  F  D  A  F  K  S  K  Y  N  D  V  A  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68770" stop="68936"/>
                    <exon start="70113" stop="70143"/>
                    <exon start="70267" stop="70554"/>
                    <exon start="70653" stop="70838"/>
                    <exon start="70954" stop="71079"/>
                    <exon start="71274" stop="71345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSGILVIVSALVVLAVCGVFAEENEYVLTLDHSNLTETVAKHNFIVVEFYAPWCGHCKSLAPEYEKAASELSSHDPPIVLAKYDANDEANRELSKQYEIQGFPTIKILRDGGKKVQDYNGPREAAGIVSYLKKQVGPASAEIKSKEDATNLIDEKSIFVVGIFPDPSGEKFENYLTLAEKLRGEFDFAHTVDAKHLPRGGPVNKPTLRLLKPFDELFVDFEDFDVDAMEKFISESSIPVVTIFDNDPNNHPYVNKFFEGTNAKALLFVNFSSEFDAFKSKYNDVAVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="82503" PGL_stop="88788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82503" e_stop="82556"/>
            <exon e_start="83399" e_stop="83428"/>
            <exon e_start="84378" e_stop="84390"/>
            <exon e_start="84657" e_stop="84727"/>
            <exon e_start="85121" e_stop="85130"/>
            <exon e_start="86905" e_stop="86945"/>
            <exon e_start="87002" e_stop="88788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.106" acc_prob="0.000" e_score="0.685"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.733"/>
          <exon-intron don_prob="0.900" acc_prob="0.144" e_score="0.769"/>
          <exon-intron don_prob="0.951" acc_prob="0.430" e_score="0.606"/>
          <exon-intron don_prob="0.067" acc_prob="0.376" e_score="0.600"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.756"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.685">
            <gDNA_exon_boundary e_start="82503" e_stop="82556" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.106" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82557" i_stop="83398" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="0.733">
            <gDNA_exon_boundary e_start="83399" e_stop="83428" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83429" i_stop="84377" i_length="949"/>
          </intron>
          <exon e_serial="3" e_score="0.769">
            <gDNA_exon_boundary e_start="84378" e_stop="84390" e_length="13"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.144">
            <gDNA_intron_boundary i_start="84391" i_stop="84656" i_length="266"/>
          </intron>
          <exon e_serial="4" e_score="0.606">
            <gDNA_exon_boundary e_start="84657" e_stop="84727" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.430">
            <gDNA_intron_boundary i_start="84728" i_stop="85120" i_length="393"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="85121" e_stop="85130" e_length="10"/>
          </exon>
          <intron i_serial="5" don_prob="0.067" acc_prob="0.376">
            <gDNA_intron_boundary i_start="85131" i_stop="86904" i_length="1774"/>
          </intron>
          <exon e_serial="6" e_score="0.756">
            <gDNA_exon_boundary e_start="86905" e_stop="86945" e_length="41"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86946" i_stop="87001" i_length="56"/>
          </intron>
          <exon e_serial="7" e_score="0.964">
            <gDNA_exon_boundary e_start="87002" e_stop="88788" e_length="1787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82503" stop="82556"/>
              <exon start="83399" stop="83428"/>
              <exon start="84378" stop="84390"/>
              <exon start="84657" stop="84727"/>
              <exon start="85121" stop="85130"/>
              <exon start="86905" stop="86945"/>
              <exon start="87002" stop="88788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318979" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTATTATTGTTATTGTTATTGTGCACAAAAAACAAAAAAAAAAAACTAG : AAATTATAACAATGAAAAGTGGATGTTATA : CATGTTTCCTATT : GTGTCACAAAATTAGCAATCACAAATCAAATACGTAAACTGTTATGTGAGTACGAAAAAATCATTCCACAT : GGATAATATA : ATCATCCAGATATACAATGAATTTACAACACTCCCCCTTGG : AAGTCTAGTGAAGGAAAAAGAGTACACATATCTCATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCATGAAAACCCAACTTGGGACAAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCGCTCCCCCTGATGAAAACTTTACTTGATATCTCGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAATGTTGATGTTGGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACCTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATACGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAACTATACATGCAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTTCTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCACGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATTGTCATGTCTCCACATGTAAACAAATATCCTGTTTGTGATCAAGCTTTATGAGGATCTGATAAATACCGTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTGCATGGTCCCTCGAAGATATCGAAATATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCTAGTAGACTTACTGCAAAATAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGATAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAACAGCTTTTAAAAGCTCTTTATGAGTGCCAATGATGTTCAAACCATCAACATACACAACTATTATTACAAATTAAGACCCCGACTGTTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGGCGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCTTCAGGCACTTTGAATGCTTTAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCGATTAGACGCATTTCAAGTTTTTCATGAACTACCAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATAAATGTTAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCACCTTTCTCATTTCTTTTTCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTTGGATTATCGGTCCAAAAACTTCACATTTTTCTAGTGAAGACAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCATCTTGTTGCATTATTT</gDNA_template>
            <first_frame> F  Y  Y  Y  C  Y  C  Y  C  A  Q  K  T  K  K  K  N  *  :  K  L  *  Q  *  K  V  D  V  I  :  H  V  S  Y   : C  V  T  K  L  A  I  T  N  Q  I  R  K  L  L  C  E  Y  E  K  I  I  P  H  :  G  *  Y   : N  H  P  D  I  Q  *  I  Y  N  T  P  P  W  :  K  S  S  E  G  K  R  V  H  I  S  H  N  T  L  *  M  L  P  R  *  K  P  Y  H  E  N  P  T  W  D  K  T  I  V  K  E  K  S  T  T  R  I  S  L  P  L  M  K  T  L  L  D  I  S  E  T  A  H  S  N  L  V  S  Q  L  L  K  C  *  C  W  Q  C  L  S  E  *  I  S  K  I  I  T  *  T  N  L  L  N  F  Y  L  T  I  L  L  K  I  I  R  E  K  E  L  W  *  D  M  L  C  P  V  S  F  D  V  S  S  F  Q  L  N  Y  T  C  S  I  I  F  V  H  C  G  W  Y  I  L  F  Q  R  K  T  T  H  F  L  N  M  M  G  H  *  S  Q  P  D  A  L  T  T  C  F  M  D  G  Y  Y  F  C  M  I  *  R  S  G  Y  Q  R  L  L  H  *  S  P  R  Y  C  H  V  S  T  C  K  Q  I  S  C  L  *  S  S  F  M  R  I  *  *  I  P  C  I  C  V  T  N  Q  F  *  F  G  F  I  G  I  E  *  T  H  V  H  G  P  S  K  I  S  K  Y  V  F  N  T  I  P  M  S  F  C  W  G  G  T  E  S  C  *  *  T  Y  C  K  I  D  I  W  S  S  I  V  S  K  V  H  *  C  P  D  R  T  K  I  R  S  F  I  T  K  K  L  F  I  I  L  L  R  S  K  W  I  C  I  D  V  K  R  S  Y  H  H  W  S  T  Q  W  M  *  V  I  H  V  K  T  L  *  Y  L  F  C  V  R  *  L  M  N  K  Y  S  I  *  Q  I  L  N  L  *  A  K  I  K  F  C  L  A  E  I  F  H  F  K  F  F  F  Q  T  L  N  S  F  *  K  L  F  M  S  A  N  D  V  Q  T  I  N  I  H  N  Y  Y  Y  K  L  R  P  R  L  F  N  E  N  A  G  T  N  R  V  I  F  V  P  F  L  *  Q  I  F  T  Q  A  I  V  P  H  P  S  *  L  F  Q  S  I  Q  R  F  L  K  F  Y  *  T  S  F  S  *  I  F  V  C  F  R  H  F  E  C  F  R  N  F  H  E  N  V  V  V  Q  *  A  I  *  I  G  C  D  N  V  D  *  T  H  F  K  F  F  M  N  Y  Q  I  Y  E  I  S  E  G  D  C  I  Y  H  W  R  I  C  L  H  I  I  N  V  R  S  L  R  K  T  L  S  N  E  S  G  L  I  S  H  D  F  T  F  L  I  S  F  S  Y  K  N  P  F  V  P  H  W  L  D  T  F  R  C  L  D  Y  R  S  K  N  F  T  F  F  *  *  R  Q  F  S  L  N  C  I  L  P  F  W  P  I  I  S  L  S  T  F  V  N  R  F  W  L  K  I  F  I  L  L  H  Y   </first_frame>
            <second_frame>  F  I  I  I  V  I  V  I  V  H  K  K  Q  K  K  K  T  R :   N  Y  N  N  E  K  W  M  L  Y :   M  F  P  I  :  V  S  Q  N  *  Q  S  Q  I  K  Y  V  N  C  Y  V  S  T  K  K  S  F  H  M :   D  N  I  :  I  I  Q  I  Y  N  E  F  T  T  L  P  L  G :   S  L  V  K  E  K  E  Y  T  Y  L  I  I  R  F  E  C  C  L  V  K  N  L  T  M  K  T  Q  L  G  T  K  P  *  L  R  K  R  V  Q  R  V  F  R  S  P  *  *  K  L  Y  L  I  S  R  R  R  R  I  P  I  L  Y  L  N  F  S  N  V  D  V  G  N  A  L  V  N  K  S  A  R  L  S  P  E  R  I  C  *  T  S  I  S  P  F  C  *  R  S  Y  V  K  K  N  F  G  E  I  C  F  V  R  S  P  L  M  Y  P  P  F  N  *  T  I  H  A  A  L  S  S  Y  I  V  V  G  I  F  F  F  K  E  K  P  H  I  F  *  I  *  W  V  I  D  L  N  Q  T  H  S  R  L  A  S  W  M  A  I  I  S  A  *  F  E  E  V  A  T  N  V  C  F  I  D  R  Q  D  I  V  M  S  P  H  V  N  K  Y  P  V  C  D  Q  A  L  *  G  S  D  K  Y  R  A  S  A  *  P  I  S  S  D  L  D  S  L  E  *  N  K  P  M  C  M  V  P  R  R  Y  R  N  M  C  L  T  P  F  Q  C  L  F  V  G  E  E  L  N  L  A  S  R  L  T  A  K  *  I  S  G  R  V  L  L  A  R  Y  I  S  A  P  I  A  L  R  *  G  V  S  S  P  R  S  S  S  S  F  S  *  G  R  N  G  S  V  L  M  S  S  D  L  T  T  I  G  V  L  N  G  C  E  L  S  M  *  K  R  F  S  I  F  S  V  Y  V  D  *  *  T  S  I  P  F  D  K  F  S  I  C  R  P  R  *  N  F  V  L  P  R  S  F  I  S  N  S  F  F  R  H  S  T  A  F  K  S  S  L  *  V  P  M  M  F  K  P  S  T  Y  T  T  I  I  T  N  *  D  P  D  C  L  M  K  M  Q  G  Q  I  G  S  F  L  Y  P  F  F  N  K  Y  S  L  R  R  L  Y  H  I  L  P  D  C  F  N  P  Y  R  D  F  *  S  F  I  E  Q  V  S  L  E  S  L  Y  A  S  G  T  L  N  A  L  G  I  F  M  K  M  L  W  S  N  E  P  Y  R  *  A  V  T  T  S  I  R  R  I  S  S  F  S  *  T  T  R  F  M  R  Y  L  K  V  I  A  S  T  T  G  E  Y  V  S  I  *  *  M  L  G  L  *  E  K  P  *  A  T  S  R  A  L  Y  L  M  T  S  P  F  S  F  L  F  R  T  K  T  H  L  Y  P  T  G  L  I  P  S  G  V  W  I  I  G  P  K  T  S  H  F  S  S  E  D  N  S  A  *  I  A  S  F  H  F  G  Q  S  F  L  C  L  H  S  *  T  D  F  G  S  K  S  S  S  C  C  I  I  </second_frame>
            <third_frame>   L  L  L  L  L  L  L  L  C  T  K  N  K  K  K  K  L   : E  I  I  T  M  K  S  G  C  Y   : T  C  F  L  L :   C  H  K  I  S  N  H  K  S  N  T  *  T  V  M  *  V  R  K  N  H  S  T   : W  I  I  * :   S  S  R  Y  T  M  N  L  Q  H  S  P  L   : E  V  *  *  R  K  K  S  T  H  I  S  *  Y  A  L  N  V  A  S  L  K  T  L  P  *  K  P  N  L  G  Q  N  H  S  *  G  K  E  Y  N  A  Y  F  A  P  P  D  E  N  F  T  *  Y  L  G  D  G  A  F  Q  S  C  I  S  T  S  Q  M  L  M  L  A  M  P  *  *  I  N  Q  Q  D  Y  H  L  N  E  F  V  E  L  L  S  H  H  F  V  E  D  H  T  *  K  R  T  L  V  R  Y  A  L  S  G  L  L  *  C  I  L  L  S  I  E  L  Y  M  Q  H  Y  L  R  T  L  W  L  V  Y  S  F  S  K  K  N  H  T  F  S  E  Y  D  G  S  L  I  S  T  R  R  T  H  D  L  L  H  G  W  L  L  F  L  H  D  L  K  K  W  L  P  T  F  A  S  L  I  A  K  I  L  S  C  L  H  M  *  T  N  I  L  F  V  I  K  L  Y  E  D  L  I  N  T  V  H  L  R  N  Q  S  V  L  I  W  I  H  W  N  R  I  N  P  C  A  W  S  L  E  D  I  E  I  C  V  *  H  H  S  N  V  F  L  L  G  R  N  *  I  L  L  V  D  L  L  Q  N  R  Y  L  V  E  Y  C  *  Q  G  T  L  V  P  R  S  H  *  D  K  E  F  H  H  Q  E  A  L  H  H  S  L  E  V  E  M  D  L  Y  *  C  Q  A  I  L  P  P  L  E  Y  S  M  D  V  S  Y  P  C  K  N  A  L  V  S  F  L  C  T  L  I  D  E  Q  V  F  H  L  T  N  S  Q  S  V  G  Q  D  K  I  L  S  C  R  D  L  S  F  Q  I  L  F  S  D  T  Q  Q  L  L  K  A  L  Y  E  C  Q  *  C  S  N  H  Q  H  T  Q  L  L  L  Q  I  K  T  P  T  V  *  *  K  C  R  D  K  S  G  H  F  C  T  L  S  L  T  N  I  H  S  G  D  C  T  T  S  F  L  I  V  S  I  H  T  E  I  S  E  V  L  L  N  K  F  L  L  N  L  C  M  L  Q  A  L  *  M  L  *  E  F  S  *  K  C  C  G  P  M  S  H  I  D  R  L  *  Q  R  R  L  D  A  F  Q  V  F  H  E  L  P  D  L  *  D  I  *  R  *  L  H  L  P  L  E  N  M  S  P  Y  N  K  C  *  V  F  E  K  N  L  E  Q  R  V  G  P  Y  I  S  *  L  H  L  S  H  F  F  F  V  Q  K  P  I  C  T  P  L  A  *  Y  L  Q  V  F  G  L  S  V  Q  K  L  H  I  F  L  V  K  T  I  Q  L  E  L  H  P  S  I  L  A  N  H  F  S  V  Y  I  R  E  Q  I  L  A  Q  N  L  H  L  V  A  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88430" stop="88681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THFKFFMNYQIYEISEGDCIYHWRICLHIINVRSLRKTLSNESGLISHDFTFLISFSYKNPFVPHWLDTFRCLDYRSKNFTFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87349" stop="87582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILLSIELYMQHYLRTLWLVYSFSKKNHTFSEYDGSLISTRRTHDLLHGWLLFLHDLKKWLPTFASLIAKILSCLHM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87910" stop="88134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQAILPPLEYSMDVSYPCKNALVSFLCTLIDEQVFHLTNSQSVGQDKILSCRDLSFQILFSDTQQLLKALYECQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84672" stop="84727"/>
                    <exon start="85121" stop="85130"/>
                    <exon start="86905" stop="86945"/>
                    <exon start="87002" stop="87104"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSQIKYVNCYVSTKKSFHMDNIIIQIYNEFTTLPLGSLVKEKEYTYLIIRFECCLVKNLTMKTQLGTKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="90644" PGL_stop="90099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90644" e_stop="90099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="90644" e_stop="90099" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90644" stop="90099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90534" stop="90166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGACCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  D  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  R  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  Y  L  A  *  P  V  G  P  S  Q  I  *  Y  D  A  Q  N  H  *  E  F  T  W  A  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  T  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  S  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  Q  L  G  H  P  R  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  H  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  S  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  L  F  G  M  T  S  W  A  I  P  D  L  I  *  C  A  K  S  L  R  I  H  M  G  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90643" stop="90101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETTNEGKVEYLYITTINVEKKIVHEKSPAFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDQLGHPRFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="91942" PGL_stop="91179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91942" e_stop="91179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="91942" e_stop="91179" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91942" stop="91179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACCGTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGTAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAACAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGTATGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  N  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  K  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  Y  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  Y  P  L  E  *  W  T  D  L  K  G  R  Y  D  H  R  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  W  F  Q  D  F  K  T  V  I  E  Y  N  R  V  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  N  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  *  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  V  W  G  R  G   </first_frame>
            <second_frame>  T  R  Y  Q  H  E  I  A  T  C  K  G  T  I  *  I  F  L  F  N  S  H  I  L  S  *  F  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  K  K  H  P  V  K  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  N  I  H  L  N  S  G  L  I  *  R  G  D  M  T  T  E  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  E  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  F  M  P  R  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  F  W  W  L  N  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  D  I  I  M  Y  G  D  V  A  </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  R  S  I  Q  S  R  *  G  E  G  Y  D  F  P  S  L  S  S  *  *  G  P  E  D  *  I  S  D  G  E  I  S  T  *  I  V  D  *  F  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  S  L  *  V  D  A  F  M  V  S  R  F  *  D  R  N  *  I  Q  Q  S  C  I  Q  D  N  L  P  V  E  I  M  W  G  D  Y  K  R  *  E  H  V  G  K  D  T  Y  Y  F  S  C  L  E  C  D  I  A  V  A  I  S  *  K  G  F  S  E  I  F  *  T  N  L  M  S  F  G  G  *  T  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  I  *  *  C  M  G  T  W  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91882" stop="91622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYSLIIFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLAAKGLDATITQGKEASSQDKAKAMIFLRYHLDEGLKIEYLTVKYPLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91621" stop="91391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTDLKGRYDHRKATVLPRARYEWMHLWFQDFKTVIEYNRVVFRITSQLKLCGETIKDENMLEKTLTTFHASNVILQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91390" stop="91181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNVWGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="117394" PGL_stop="120610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117394" e_stop="117827"/>
            <exon e_start="119014" e_stop="119106"/>
            <exon e_start="119835" e_stop="119969"/>
            <exon e_start="120300" e_stop="120610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="117394" e_stop="117827" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117828" i_stop="119013" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119014" e_stop="119106" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="119107" i_stop="119834" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119835" e_stop="119969" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119970" i_stop="120299" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="120300" e_stop="120610" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117394" stop="117827"/>
              <exon start="119014" stop="119106"/>
              <exon start="119835" stop="119969"/>
              <exon start="120300" stop="120610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG : ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG : GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTCCTGT</gDNA_template>
            <first_frame> Y  L  P  P  T  S  K  T  L  K  I  S  L  K  E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R :   Q  E  Q  D  L  S  K  W  R  I  M  R  T  L  L  I  *  E  L  I  I  L  L  I  Q  A  M  F  T  R  G  I  Q  L  L  M  I  G  F  L  L  L  L  M  R :   L  I  L  S  Q  E  N  H  T  E  V  I  T  E  I  E  S  L  I  K  T  V  S  A  Y  F  V  F  L  *  S  L  A  S  T  C  V  S  F  V  W  L  Y  L  N  N  M  L  Y  E  L  F  Q  T  I  L  M  K  N  L  Y  *  P  N  I  S  *  G  G  V  M  E  W  F  E  *  P  K  P  L  T  R  G  L  E  F  K  L  L  *  T  K  N  S  I  I  K  D  I  L  F  F  L  </first_frame>
            <second_frame>  T  Y  H  Q  L  P  K  L  S  K  Y  L  *  R  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H   : D  R  N  R  I  Y  Q  S  G  E  *  *  E  H  F  *  Y  R  S  *  L  Y  Y  *  S  K  P  C  L  Q  G  E  S  S  Y  *  *  L  D  S  F  C  C  *  *   : G  *  F  Y  L  R  K  T  T  Q  K  *  *  L  K  L  S  L  *  *  R  Q  Y  L  L  I  L  Y  F  C  E  A  W  L  Q  L  V  S  L  L  F  G  C  I  *  I  T  C  Y  M  N  Y  F  K  R  F  *  *  R  I  Y  I  S  Q  I  S  A  K  G  V  *  W  N  G  S  N  N  L  N  H  *  P  E  V  S  N  L  N  C  C  E  R  K  I  A  L  *  R  I  S  F  S  S  C </second_frame>
            <third_frame>   P  T  T  N  F  Q  N  S  Q  N  I  F  E  G  K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  :  T  G  T  G  F  I  K  V  E  N  N  E  N  T  F  N  I  G  A  D  Y  T  T  D  P  S  H  V  Y  K  G  N  P  A  T  N  D  W  I  P  S  A  V  D  E  :  V  N  F  I  S  G  K  P  H  R  S  D  N  *  N  *  V  F  D  K  D  S  I  C  L  F  C  I  S  V  K  L  G  F  N  L  C  L  F  C  L  V  V  F  E  *  H  A  I  *  I  I  S  N  D  F  N  E  E  F  I  L  A  K  Y  Q  L  R  G  C  D  G  M  V  R  I  T  *  T  I  N  Q  R  S  R  I  *  T  V  V  N  E  K  *  H  Y  K  G  Y  P  F  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117510" stop="117827"/>
                    <exon start="119014" stop="119106"/>
                    <exon start="119835" stop="119969"/>
                    <exon start="120300" stop="120341"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTTGTGFIKVENNENTFNIGADYTTDPSHVYKGNPATNDWIPSAVDEVNFISGKPHRSDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="123351" PGL_stop="120807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123351" e_stop="123238"/>
            <exon e_start="121570" e_stop="121444"/>
            <exon e_start="121289" e_stop="120807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="0.947"/>
          <exon-intron don_prob="0.097" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="123351" e_stop="123238" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="123237" i_stop="121571" i_length="1667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121570" e_stop="121444" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.097" acc_prob="0.989">
            <gDNA_intron_boundary i_start="121443" i_stop="121290" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="121289" e_stop="120807" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123351" stop="123238"/>
              <exon start="121570" stop="121444"/>
              <exon start="121289" stop="120807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344643" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG : ATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAG : GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTATATATTACCGGAGTTTGATTAGGTCCGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAAACTTAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</gDNA_template>
            <first_frame> A  *  *  P  G  A  R  R  G  S  G  D  H  V  F  L  C  V  S  A  K  G  D  F  *  I  F  P  H  A  K  A  F  S  G  *  K  E  :  I  T  *  N  C  N  K  T  W  G  A  S  G  S  V  *  A  A  D  *  P  K  G  V  C  P  R  E  P  *  V  W  F  G  *  S  G  I  *  M  G  K   : G  D  P  I  C  *  D  M  *  T  H  R  C  P  *  R  C  Y  S  E  D  Y  C  *  I  R  R  D  L  S  *  I  *  K  C  C  C  N  Y  G  Q  L  C  T  V  Q  E  N  G  N  C  I  *  C  D  Q  A  R  Y  R  V  C  S  *  L  I  Y  Y  R  S  L  I  R  S  G  S  L  D  F  I  C  N  S  K  G  P  D  D  T  H  V  V  H  *  N  M  F  A  K  V  W  T  L  S  K  A  T  L  Q  F  G  *  F  V  Q  K  F  K  S  F  K  C  T  F  S  N  R  Q  *  I  T  P  *  L  A  Q  R  D  T  *  T  *  R  I  Y  C  M  T  F  S  *  N  L  G  M  I  L  K  F  C  I  </first_frame>
            <second_frame>  L  D  D  L  E  P  E  E  A  V  A  I  M  S  S  F  V  F  Q  Q  K  E  T  S  E  S  F  L  T  P  K  L  S  Q  A  K  K  R :   L  H  E  T  A  I  R  L  G  E  L  Q  A  Q  F  K  L  P  I  D  P  K  E  Y  A  Q  E  N  L  K  F  G  L  V  E  V  V  Y  E  W  A  K  :  G  T  P  F  A  E  I  C  E  L  T  D  V  P  E  G  V  I  V  R  T  I  V  R  L  D  E  T  C  R  E  F  R  N  A  A  A  I  M  G  N  S  A  L  Y  K  K  M  E  T  A  S  N  V  I  K  R  D  I  V  F  A  A  S  L  Y  I  T  G  V  *  L  G  P  E  A  L  I  S  F  A  I  L  K  D  L  T  I  H  M  L  Y  T  R  I  C  S  P  R  C  G  L  *  A  R  L  P  Y  N  L  A  N  L  Y  R  N  S  S  L  S  N  V  H  L  A  I  D  S  R  L  H  H  D  *  H  R  E  I  H  K  L  K  G  F  T  V  *  H  S  L  K  I  *  V  *  F  *  S  S  A  S </second_frame>
            <third_frame>   L  M  T  W  S  Q  K  R  Q  W  R  S  C  L  P  L  C  F  S  K  R  R  L  L  N  L  S  S  R  Q  S  F  L  R  L  K  R   : D  Y  M  K  L  Q  *  D  L  G  S  F  R  L  S  L  S  C  R  L  T  Q  R  S  M  P  K  R  T  L  S  L  V  W  L  K  W  Y  M  N  G  Q  R :   G  P  H  L  L  R  Y  V  N  S  Q  M  S  L  K  V  L  *  *  G  L  L  L  D  *  T  R  L  V  V  N  L  E  M  L  L  Q  L  W  A  T  L  H  C  T  R  K  W  K  L  H  L  M  *  S  S  A  I  S  C  L  Q  L  A  Y  I  L  P  E  F  D  *  V  R  K  P  *  F  H  L  Q  F  *  R  T  *  R  Y  T  C  C  T  L  E  Y  V  R  Q  G  V  D  F  E  Q  G  Y  P  T  I  W  L  I  C  T  E  I  Q  V  F  Q  M  Y  I  *  Q  S  T  V  D  Y  T  M  I  S  T  E  R  Y  I  N  L  K  D  L  L  Y  D  I  L  L  K  F  R  Y  D  F  E  V  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123350" stop="123238"/>
                    <exon start="121570" stop="121444"/>
                    <exon start="121289" stop="121077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLHETAIRLGELQAQFKLPIDPKEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="143929" PGL_stop="144545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143929" e_stop="144545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="143929" e_stop="144545" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143929" stop="144545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</gDNA_template>
            <first_frame> S  T  C  G  G  I  I  L  S  A  I  Q  H  *  A  S  L  N  H  *  Q  T  V  G  I  *  E  Y  S  R  L  V  V  I  R  W  M  V  F  C  L  H  L  L  V  I  S  Q  T  P  C  K  F  L  K  H  L  N  V  N  *  R  V  S  F  Q  N  K  L  L  I  L  L  D  *  Q  G  *  V  C  R  T  I  S  *  *  V  I  F  Q  K  Q  C  K  E  C  *  T  F  K  N  F  T  *  E  A  T  S  *  K  E  P  Y  Q  M  L  S  A  V  Y  S  I  L  V  H  *  N  C  Q  K  I  N  F  L  V  P  F  H  H  A  *  G  M  L  L  V  *  G  H  S  I  *  I  T  T  S  W  I  L  D  Y  L  Q  D  W  G  D  F  K  T  S  *  S  S  I  F  H  P  I  I  *  V  E  K  F  R  *  R  A  E  T  *  R  V  Q  H  *  L  I  C  Q  I  I  I  F   </first_frame>
            <second_frame>  Q  L  V  G  E  *  F  C  Q  R  F  N  I  E  L  P  *  I  I  D  K  L  *  E  S  K  S  T  H  A  W  W  *  S  V  G  W  C  F  A  C  I  C  W  *  F  L  K  L  L  A  N  F  *  S  I  *  M  *  T  E  G  C  H  F  K  T  N  Y  *  S  Y  W  I  D  K  D  E  S  V  E  Q  S  V  D  R  S  Y  S  K  N  S  A  R  N  A  E  P  S  R  T  L  P  R  K  Q  Q  V  R  R  S  H  T  R  C  Y  L  Q  F  T  V  S  W  C  I  R  I  V  R  K  S  I  F  *  F  R  S  T  M  L  R  E  C  Y  *  F  E  D  T  L  S  R  *  Q  Q  A  G  F  *  I  T  C  K  I  G  G  T  S  K  H  H  R  V  Q  Y  F  I  Q  L  F  E  W  R  N  S  A  R  E  R  K  L  E  G  C  N  T  D  *  S  V  K  *  L  F  F  </second_frame>
            <third_frame>   N  L  W  G  N  N  F  V  S  D  S  T  L  S  F  L  E  S  L  T  N  C  R  N  L  R  V  L  T  L  G  G  N  P  L  D  G  V  L  P  A  S  V  G  N  F  S  N  S  L  Q  I  F  E  A  S  K  C  K  L  K  G  V  I  S  K  Q  I  T  N  L  T  G  L  T  R  M  S  L  S  N  N  Q  L  I  G  H  I  P  K  T  V  Q  G  M  L  N  L  Q  E  L  Y  L  G  S  N  K  L  E  G  A  I  P  D  V  I  C  S  L  Q  Y  L  G  A  L  E  L  S  E  N  Q  F  S  S  S  V  P  P  C  L  G  N  V  T  S  L  R  T  L  Y  L  D  N  N  K  L  D  S  R  L  P  A  R  L  G  G  L  Q  N  I  I  E  F  N  I  S  S  N  Y  L  S  G  E  I  P  L  E  S  G  N  L  K  G  A  T  L  I  D  L  S  N  N  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0054K13.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143931" stop="144545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWGNNFVSDSTLSFLESLTNCRNLRVLTLGGNPLDGVLPASVGNFSNSLQIFEASKCKLKGVISKQITNLTGLTRMSLSNNQLIGHIPKTVQGMLNLQELYLGSNKLEGAIPDVICSLQYLGALELSENQFSSSVPPCLGNVTSLRTLYLDNNKLDSRLPARLGGLQNIIEFNISSNYLSGEIPLESGNLKGATLIDLSNNYFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="151342" PGL_stop="150884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151342" e_stop="150884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="151342" e_stop="150884" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151342" stop="150884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAATTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  S  K  K  I  V  *  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  *  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  F  L  K  K  I  K  S  N  K  Y  K  F  K  I  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  N  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  E  L  Q  M  T  K  L  R  G  I  S  D  L  F  P  F  Y  I  *  L  * </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  V  K  K  *  F  N  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  N  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  F  *  K  K  L  K  V  I  N  I  N  L  K  *  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  Q  Q  G  *  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  M  S  S  K  *  Q  S  *  G  V  Y  Q  T  F  F  P  F  I  Y  N  Y   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  *  K  N  S  L  I  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  M  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  K  F  F  N  F  R  *  M  K  G  I  C  E  S  F  Y  N  S  R  G  K  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  L  Y  I  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0054K13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 175848 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 9255 bytes was the average size of a spliced alignment
$ 22976 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1531 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 37 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:51:10
-->
