<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:22:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393351" ref_strand="+" ref_description="SGN-E393351 [TUS-38-M9](-)">
      <seq>gaacaagagagtactcaaagacagttgcagtggaaccttatattgtgaactacaatggagctctcttccgtcagtatcctgggccttggcaggtgatgctgaaacagacagatggttcttttgtttgtgtggcagaaagcgcaactcgcttcactcttaacgaaaccaaggaagaactattgagagtcctcggattgcaagaagagaaaggaagctcacttgaatttctcagaagaggatacaagactgcgacctggtgggaagaagatattgatttagaagcatcctctgcatggcgtagttgaacagaagaagaagatggcgtgtggggtgcagatttatgacacactcaggtggtagaggaacaagctactaaattaccaaatttgttgatccagcattcccttctgaacaatgctttttgtatttattctactttatagtaacttgtacttcaactagaaagaaggtttgtcttaaagaagtccctagccatgaaagaaagaatttgtgtaacacttaaattctcttttagctctctcattgttcaactcgtgtaaaggttttccacggcaaaaagagccttcatcctctttgtttctttaattgtgcagctcatttgcacttctatccctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1078" stop="3313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1378" g_stop="1397" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1398" i_stop="1488" i_length="91">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1489" g_stop="1549" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="81" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1550" i_stop="2194" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2195" g_stop="2277" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="164" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2278" i_stop="2359" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2360" g_stop="2440" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="245" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2441" i_stop="2622" i_length="182">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2623" g_stop="3012" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="635" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="653"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E393351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1378" e_stop="1397"/>
          <exon e_start="1489" e_stop="1549"/>
          <exon e_start="2195" e_stop="2277"/>
          <exon e_start="2360" e_stop="2440"/>
          <exon e_start="2623" e_stop="3012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGAGAGTACTCAAAGGTGACAATTTTGTGATCTTGGTTTCATCTATATTATATCGACCTTGTAATTCTGTAATGCATAATTTCGTTTTTTCTTTTTCTCATGGAAGACAGTTGCAGTGGAACCTTATATTGTGAACTACAATGGAGCTCTCTTCCGTCAGTATCCTGGTAAGTTTTCATTCTTGTGGTTATACGCTTATTTAGGGGCTCTGTTACTACTGTTTCATTATTTCACTATATTTACCGACTTCCTCTTCTTGTTTCTCAATTGAATTTCCTTTTTTCTGATGTCAAAATATGAGTGCAGATTGTTTTCTTGTTGTTCACTCCAGTAGAACAATAGTGGAACAGAAATTTGAGGATAGAGTATACTAGTTGTTTAAGTAATTGAATATATGTGATTTGTAAATATTTCTGATCCTTCCAAGGTTATATGCCAAGTCTATATTAAGAGTGTAAAAAAGATCTGATCCTAGGAACTATCGTCATAAAATGAGGTGAGAGAAGAGAATGTAGATTAGGACGATCTACTGTCAAATAAATTCTTTGCTTGTTATAGTTATTTGTGGAACTCCACAATATTAAGAATAACTTCCCTTTTAAGAAAATTCAAATCCTCTAAATGAAACTGAAGTATTTGAAACTAGATATTTATAACATCACTTAAGAGTAATCGATGTAACATCTTTTTGTTTCATTAGAAGATTCTATGTCGTTTCTGATATTCAGGCTTCAGCACAGGTACTTCTGTAAGATTGCGTATGCACCAATATGGAATACCGACAACCTTTAGCTTTTGTTTCAATCTTGCAGGGCCTTGGCAGGTGATGCTGAAACAGACAGATGGTTCTTTTGTTTGTGTGGCAGAAAGCGCAACTCGCTTCACTCTTAACGAAGTAACTATACATCTGATTCACGCAACTTGTTTTTCTTAATAACTTGTATGGTAAATAAGTTGCAAAAAACATGTTATGGCAGACCAAGGAAGAACTATTGAGAGTCCTCGGATTGCAAGAAGAGAAAGGAAGCTCACTTGAATTTCTCAGAAGAGGATACAAGGTCTCTTCACAGTAATTTTGAACTTGCATAGTTTTTGTGCTCATTTGTCTTTTATCCATCAACAACTACAGTTTCTTTCATCAAACTAATCTCTTTCTCATTGCTTATATCCTATGAAGATAAGTGAAATACGCAATAGATTTGAGAATATGTTTGACTGATGCTTTAATGCCCTGCTGCAGACTGCGACCTGGTGGGAAGAAGATATTGATTTAGAAGCATCCTCTGCATGGCGTAGTTGAACAGAAGAAGAAGATGGCGTGTGGGGTGCAGATTTATGACACACTCAGGTGGTAGAGGAACAAGCTACTAAATTACCAAATTTGTTGATCCAGCATTCCCTTCTGAACAATGCTTTTTGTATTTATTCTACTTTATAGTAACTTGTACTTCAACTAGAAAGAAGGTTTGTCTTAAAGAAGTCCCTAGCCATGAAAGAAAGAATTTGTGTAACACTTAAATTCTCTTTTAGCTCTCTCATTGTTCAACTCGTGTAAAGGTTTTCCACGGCAAAAAGAGCCTTCATCCTCTTTGTTTCTTTAATTGTGCAGCTCATTTGCACTTCTATCCCT</genome_strand>
        <mrna_strand>GAACAAGAGAGTACTCAAAG...........................................................................................ACAGTTGCAGTGGAACCTTATATTGTGAACTACAATGGAGCTCTCTTCCGTCAGTATCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTGGCAGGTGATGCTGAAACAGACAGATGGTTCTTTTGTTTGTGTGGCAGAAAGCGCAACTCGCTTCACTCTTAACGAA..................................................................................ACCAAGGAAGAACTATTGAGAGTCCTCGGATTGCAAGAAGAGAAAGGAAGCTCACTTGAATTTCTCAGAAGAGGATACAAG......................................................................................................................................................................................ACTGCGACCTGGTGGGAAGAAGATATTGATTTAGAAGCATCCTCTGCATGGCGTAGTTGAACAGAAGAAGAAGATGGCGTGTGGGGTGCAGATTTATGACACACTCAGGTGGTAGAGGAACAAGCTACTAAATTACCAAATTTGTTGATCCAGCATTCCCTTCTGAACAATGCTTTTTGTATTTATTCTACTTTATAGTAACTTGTACTTCAACTAGAAAGAAGGTTTGTCTTAAAGAAGTCCCTAGCCATGAAAGAAAGAATTTGTGTAACACTTAAATTCTCTTTTAGCTCTCTCATTGTTCAACTCGTGTAAAGGTTTTCCACGGCAAAAAGAGCCTTCATCCTCTTTGTTTCTTTAATTGTGCAGCTCATTTGCACTTCTATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374540" ref_strand="+" ref_description="SGN-E374540 [TUS-38-P8](-)">
      <seq>ctcaaagacagttgcagtggaaccttatattgtgaactacaatggagctctcttccgtcagtatcctgggccttggcaggtgatgctgaaacagacagatggttcttttgtttgtgtggcagaaagcgcaactcgcttcactcttaacgaaaccaaggaagaactattgagagtcctcggattgcaagaagagaaaggaagctcacttgaatttctcagaagaggatacaagactgcgacctggtgggaagaagatattgatttagaagcatcctctgcatggcgtagttgaacagaagaagaagatggcgtgtggggtgcagatttatgacacactcaggtggtagaggaacaagctactaaattaccaaatttgttgatccagcattcccttctgaacaatgctttttgtatttattctactttatagtaacttgtacttcaactagaaagaaggtttgtcttaaagaagtccctagccatgaaagaaagaatttgtgtaacacttaaattctcttttagctctctcattgttcaactcgtgtaaaggttttccacggcaaaaagagccttcatcctctttgtttctttaattgtgcagctcatttgcacttctatccctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1186" stop="3313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1391" g_stop="1397" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1398" i_stop="1488" i_length="91">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1489" g_stop="1549" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="68" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1550" i_stop="2194" i_length="645">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2195" g_stop="2277" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="151" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2278" i_stop="2359" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2360" g_stop="2440" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="232" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2441" i_stop="2622" i_length="182">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2623" g_stop="3012" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="622" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="639"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E374540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1391" e_stop="1397"/>
          <exon e_start="1489" e_stop="1549"/>
          <exon e_start="2195" e_stop="2277"/>
          <exon e_start="2360" e_stop="2440"/>
          <exon e_start="2623" e_stop="3012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGGTGACAATTTTGTGATCTTGGTTTCATCTATATTATATCGACCTTGTAATTCTGTAATGCATAATTTCGTTTTTTCTTTTTCTCATGGAAGACAGTTGCAGTGGAACCTTATATTGTGAACTACAATGGAGCTCTCTTCCGTCAGTATCCTGGTAAGTTTTCATTCTTGTGGTTATACGCTTATTTAGGGGCTCTGTTACTACTGTTTCATTATTTCACTATATTTACCGACTTCCTCTTCTTGTTTCTCAATTGAATTTCCTTTTTTCTGATGTCAAAATATGAGTGCAGATTGTTTTCTTGTTGTTCACTCCAGTAGAACAATAGTGGAACAGAAATTTGAGGATAGAGTATACTAGTTGTTTAAGTAATTGAATATATGTGATTTGTAAATATTTCTGATCCTTCCAAGGTTATATGCCAAGTCTATATTAAGAGTGTAAAAAAGATCTGATCCTAGGAACTATCGTCATAAAATGAGGTGAGAGAAGAGAATGTAGATTAGGACGATCTACTGTCAAATAAATTCTTTGCTTGTTATAGTTATTTGTGGAACTCCACAATATTAAGAATAACTTCCCTTTTAAGAAAATTCAAATCCTCTAAATGAAACTGAAGTATTTGAAACTAGATATTTATAACATCACTTAAGAGTAATCGATGTAACATCTTTTTGTTTCATTAGAAGATTCTATGTCGTTTCTGATATTCAGGCTTCAGCACAGGTACTTCTGTAAGATTGCGTATGCACCAATATGGAATACCGACAACCTTTAGCTTTTGTTTCAATCTTGCAGGGCCTTGGCAGGTGATGCTGAAACAGACAGATGGTTCTTTTGTTTGTGTGGCAGAAAGCGCAACTCGCTTCACTCTTAACGAAGTAACTATACATCTGATTCACGCAACTTGTTTTTCTTAATAACTTGTATGGTAAATAAGTTGCAAAAAACATGTTATGGCAGACCAAGGAAGAACTATTGAGAGTCCTCGGATTGCAAGAAGAGAAAGGAAGCTCACTTGAATTTCTCAGAAGAGGATACAAGGTCTCTTCACAGTAATTTTGAACTTGCATAGTTTTTGTGCTCATTTGTCTTTTATCCATCAACAACTACAGTTTCTTTCATCAAACTAATCTCTTTCTCATTGCTTATATCCTATGAAGATAAGTGAAATACGCAATAGATTTGAGAATATGTTTGACTGATGCTTTAATGCCCTGCTGCAGACTGCGACCTGGTGGGAAGAAGATATTGATTTAGAAGCATCCTCTGCATGGCGTAGTTGAACAGAAGAAGAAGATGGCGTGTGGGGTGCAGATTTATGACACACTCAGGTGGTAGAGGAACAAGCTACTAAATTACCAAATTTGTTGATCCAGCATTCCCTTCTGAACAATGCTTTTTGTATTTATTCTACTTTATAGTAACTTGTACTTCAACTAGAAAGAAGGTTTGTCTTAAAGAAGTCCCTAGCCATGAAAGAAAGAATTTGTGTAACACTTAAATTCTCTTTTAGCTCTCTCATTGTTCAACTCGTGTAAAGGTTTTCCACGGCAAAAAGAGCCTTCATCCTCTTTGTTTCTTTAATTGTGCAGCTCATTTGCACTTCTATCCCT</genome_strand>
        <mrna_strand>CTCAAAG...........................................................................................ACAGTTGCAGTGGAACCTTATATTGTGAACTACAATGGAGCTCTCTTCCGTCAGTATCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTGGCAGGTGATGCTGAAACAGACAGATGGTTCTTTTGTTTGTGTGGCAGAAAGCGCAACTCGCTTCACTCTTAACGAA..................................................................................ACCAAGGAAGAACTATTGAGAGTCCTCGGATTGCAAGAAGAGAAAGGAAGCTCACTTGAATTTCTCAGAAGAGGATACAAG......................................................................................................................................................................................ACTGCGACCTGGTGGGAAGAAGATATTGATTTAGAAGCATCCTCTGCATGGCGTAGTTGAACAGAAGAAGAAGATGGCGTGTGGGGTGCAGATTTATGACACACTCAGGTGGTAGAGGAACAAGCTACTAAATTACCAAATTTGTTGATCCAGCATTCCCTTCTGAACAATGCTTTTTGTATTTATTCTACTTTATAGTAACTTGTACTTCAACTAGAAAGAAGGTTTGTCTTAAAGAAGTCCCTAGCCATGAAAGAAAGAATTTGTGTAACACTTAAATTCTCTTTTAGCTCTCTCATTGTTCAACTCGTGTAAAGGTTTTCCACGGCAAAAAGAGCCTTCATCCTCTTTGTTTCTTTAATTGTGCAGCTCATTTGCACTTCTATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541136" ref_strand="+" ref_description="SGN-E541136 [TUS-61-M10](-)">
      <seq>tgaaaaggggccaaaaataaagaggaggcggccatgaaaatgtggaaaccgacaagagtgatatgatttggatcaactttataaaatgagaaacgatagccataactttgcaagggtcacgtccacttccacagagatgaacccatttttgaggatgtgtccagagatagtagtaaaatggaaatggtgatatcactgctaaacatgcccataatcccattttcactgatacgattgtttctgtctttaacctcaatgctcaaagtccacaaaaaggaaagtccctttcaagtttcgacgacaactctaatgtgtcagcatattttctaaggtttgggccatattgttgggcttgctggaaattagttggtttttaatcgtataaatttaacgaatcccatagtgtaattcaataattacattctgtcccgataagtttaattaaattagaattgacaataatttgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5986" stop="4912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5686" g_stop="5205" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E541136" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5686" e_stop="5205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGGCCAAAAATAAAGAGGAGGCGGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTGAAATATCCGCAA</genome_strand>
        <mrna_strand>TGAAAAGGGGCCAAAAATAAAGAGGAGGCGGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548500" ref_strand="+" ref_description="SGN-E548500 [TUS-61-M10]">
      <seq>tgaaaaggggccaaaaataaagaggaggcggccatgaaaatgtggaaaccgacaagagtgatatgatttggatcaactttataaaatgagaaacgatagccataactttgcaagggtcacgtccacttccacagagatgaacccatttttgaggatgtgtccagagatagtagtaaaatggaaatggtgatatcactgctaaacatgcccataatcccattttcactgatacgattgtttctgtctttaacctcaatgctcaaagtccacaaaaaggaaagtccctttcaagtttcgacgacaactctaatgtgtcagcatattttctaaggtttgggccatattgttgggcttgctggaaattagttggtttttaatcgtataaatttaacgaatcccatagtgtaattcaataattacattctgtcccgataagtttaattaaattagaattgacaataatttgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5986" stop="4912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5686" g_stop="5205" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E548500" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5686" e_stop="5205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGGCCAAAAATAAAGAGGAGGCGGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTGAAATATCCGCAA</genome_strand>
        <mrna_strand>TGAAAAGGGGCCAAAAATAAAGAGGAGGCGGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295200" ref_strand="+" ref_description="SGN-E295200 [cLET-20-D12]">
      <seq>gaaaaggggccaaaaataaagaggaggctgccatgaaaatgtggaaaccgacaagagtgatatgatttggatcaactttataaaatgagaaacgatagccataactttgcaagggtcacgtccacttccacagagatgaacccatttttgaggatgtgtccagagatagtagtaaaatggaaatggtgatatcactgctaaacatgcccataatcccattttcactgatacgattgtttctgtctttaacctcaatgctcaaagtccacaaaaaggaaagtccctttcaagtttcgacgacaactctaatgtgtcagcatattttctaaggtttgggccatattgttgggcttgctggaaattagttggtttttaatcgtataaatttaacgaatcccatagtgtaattcaataattacattctgtcccgataagtttaattaaattagaattgacaataatttgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5985" stop="4912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5685" g_stop="5205" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E295200" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5685" e_stop="5205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGGGCCAAAAATAAAGAGGAGGCGGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTGAAATATCCGCAA</genome_strand>
        <mrna_strand>GAAAAGGGGCCAAAAATAAAGAGGAGGCTGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291060" ref_strand="+" ref_description="SGN-E291060 [cLET-8-I7]">
      <seq>tgggttactgatctttacctcccacctaattgtactcaactagactttgttctgaaagactaaaaatcaaggatattttggtgaagtccggttgggataggatagagaataaatattgaattttttgagtttagggtttagggttccagccaatcttcctgagtaattcgggtttcttctatgagtttaagttctgtatgatgaggtagtgattagtgaacctcatatcattactcttctatagctgcttatttactatagttagccaatatacatatattatgcactatggtcagatattttacatttgccggctacttttctgggtcggcgatatgtaagttaatttccctgtttaatatgtagattatttcagctcacagaagagtaatgattctgaggttcactgccaaacttaaaacgtagttcttatttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6650" stop="7689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6950" g_stop="7389" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E291060" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6950" e_stop="7389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTACTGATCTTTACCTCCCACCTAATTGTACTCAACTAGACTTTGTTCTGAAAGACTAAAAATCAAGGATATTTTGGTGAAGTCCGGTTGGGATAGGATAGAGAATAAATATTGAATTTTTTGAGTTTAGGGTTTAGGGTTCCAGCCAATCTTCCTGAGTAATTCGGGTTTCTTCTATGAGTTTAAGTTCTGTATGATGAGGTAGTGATTAGTGAACCTCATATCATTACTCTTCTATAGCTGCTTATTTACTATAGTTAGCCAATATACATATATTATGCACTATTATCATATATTTTACATTTGCCGGCTACTTTTCTGGGTCGGCGATATGTAAGTTAATTTCCCTGTTTAATATGTAGATTATTTCAGCTCACAGAAGAGTAATGATTCTGAGGTTCACTGCCAAACTTAAAACGTAGTTCTTATTTCTTAA</genome_strand>
        <mrna_strand>TGGGTTACTGATCTTTACCTCCCACCTAATTGTACTCAACTAGACTTTGTTCTGAAAGACTAAAAATCAAGGATATTTTGGTGAAGTCCGGTTGGGATAGGATAGAGAATAAATATTGAATTTTTTGAGTTTAGGGTTTAGGGTTCCAGCCAATCTTCCTGAGTAATTCGGGTTTCTTCTATGAGTTTAAGTTCTGTATGATGAGGTAGTGATTAGTGAACCTCATATCATTACTCTTCTATAGCTGCTTATTTACTATAGTTAGCCAATATACATATATTATGCACTATGGTCAGATATTTTACATTTGCCGGCTACTTTTCTGGGTCGGCGATATGTAAGTTAATTTCCCTGTTTAATATGTAGATTATTTCAGCTCACAGAAGAGTAATGATTCTGAGGTTCACTGCCAAACTTAAAACGTAGTTCTTATTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689231" ref_strand="+" ref_description="SGN-E689231 [t3_tus_80_K18]">
      <seq>cgttagagtggaagccaacacatcactcctttattaatctcctgtcatttcgttctttattgcaacaaagagcacactgtaaaccctttaattttcaaccaaacataccagtagaggaagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattactgaagcttcaaggcgatatacagtcctgtggatatgaggatgtacaggtgatgtgggaaatgcttggagggacggattcagagttgacatctcggcacatcaggcgtaaagcgccaacggttgtttaggcattttgaacggttagcgctaaaccatcctcctctccagatcacaccattgagatggtatgctgcactgcagaaataagagtatctgaagagtgaagagatgtatgttacttgtaattttcaagcccccaggtagatcgggggactttcatgacaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcactaaataaataaaaagaactatgaagagctcatttttttcctaanagaaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9249" stop="10673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9531" g_stop="9742" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9743" i_stop="9981" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9982" g_stop="10373" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="602" r_length="392" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="626"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E689231" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9531" e_stop="9742"/>
          <exon e_start="9982" e_stop="10373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA</genome_strand>
        <mrna_strand>CGTT-AGAGTGGAAGCCAA-CACATCACTCCTTTATTAATCTCCTGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACCAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAGGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATCGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734979" ref_strand="+" ref_description="SGN-E734979 [LB14AD10]">
      <seq>gctaaacacatcactcctttattaatctccagtcatttcgttctttattgcaacaaagagcacactgtaaaccctttaattttcaaccaaacatacaagtagaggaagaggagatggaggatttgtggcaaaaaatggtctttccggttagacgtgtttggggtgctgtttctgctcgtgtcaagcctcgtaaagatggtgctggattactgaagcttcaaggcgatatacagtcctgtggatatgaggatgtacaggtgatgtgggaaatgcttggagggacggattcagagttgacatctcggcacatcaagcgtaaagcgccaacggttgtttaggcattttgaacggttagcgctaaaccatcctcctctccagatcacaccattgagatggtatgctgcactgcagaaataagagtatctgaagagtgaagagatgtatgttacttgtaattttcaagcccccaggtagatagggggactttcatgacaacattatcagttgtaaatataccatcgccctgatgatgtatgaaaattcggcactaaataaataaaaagaactatgaagagctcatttttttcctannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9245" stop="10673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9545" g_stop="9742" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9743" i_stop="9981" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9982" g_stop="10373" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="590" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10374" i_stop="10454" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10455" g_stop="10471" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="607" r_length="17" r_score="0.471"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E734979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9545" e_stop="9742"/>
          <exon e_start="9982" e_stop="10373"/>
          <exon e_start="10455" e_stop="10471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATGGTTAGTCATAAAACTTACCTGCATTCGGTGTTTTTGAACATATAGGAAGAAGCTACATATGAATGAACTAGTTTTAGTTTTTTTAAATCAAAACCTCTCCCCCTGTTTTTTCTACAATCTAACTTTTTAAAAAGAGACACTGTCTCATAAGTAATGACTAAGATGCAATGAATTGTAGAGTCTCAAGGAAAGAGTGAAAAAAACAGCTTTGTGGATTACTTACTTTTTGTTAACATCAGGTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTACTTTCTTTGCTTAAGTCTGATATACAGAAACAAAAGATTACTAGAAGAATGAAATCTATACCTGTTTTGGTGGCCATGTAGACACAACTCTAATAAAT</genome_strand>
        <mrna_strand>GCTAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG...............................................................................................................................................................................................................................................GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA.................................................................................NNAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397873" ref_strand="+" ref_description="SGN-E397873 [TUS-35-D6](-)">
      <seq>aaattttgccatcagccgttacaacaattctttaggtgcaaaccctaatgacatgaatattcccatgcctaacacaaacaaagaagaaaagacatcgtcgtccgtcgtagactgcccggagacaccaccggaggtggagaaatgtaggaggattactacattcccagatgacatacaaacgtactttgactgccaagattccagtagtagctttgtggaggatagtcatattatttttggagatttagagtcatttgtgttgcctatgatgtttgaatcatgtcatcaacttgaggaatttttatctttttctccctattcagaatttgaactcgagacctctgattaaagttggagcaacctcacctcaccattgctccacaattggttacgtgaagggtatatcaattgtttcttagttttgatattttgaagaattaattattgagttctttatttcaagagaggtgagaaattaagggtatagagtagtattatttatgtttcctagtaataaggtggttgtttaaactttaatgtttagatgaatgaggctagtagagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17220" stop="16054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16920" g_stop="16355" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E397873" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16920" e_stop="16355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGACATCAGCCGTTACAACAATTCTTTAGGTGCAAACCCTAATGACATGAATATTCCCATGCCTAACACAAACAAAGAAGAAAAGACATCGTCGTCCGTCGTAGACTGCCCGGAGACACCACCGGAGGTGGAGAAATGTAGGAGGATTACTACATTCCCAGATGACATACAAACGTACTTTGACTGCCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGTAATTATGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGCTCGTAGAGTTT</genome_strand>
        <mrna_strand>AAATTTTGCCATCAGCCGTTACAACAATTCTTTAGGTGCAAACCCTAATGACATGAATATTCCCATGCCTAACACAAACAAAGAAGAAAAGACATCGTCGTCCGTCGTAGACTGCCCGGAGACACCACCGGAGGTGGAGAAATGTAGGAGGATTACTACATTCCCAGATGACATACAAACGTACTTTGACTGCCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTATTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCTCCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTTCTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCCTAGTAATAAGGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGCTAGTAGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394892" ref_strand="+" ref_description="SGN-E394892 [TUS-43-E9](-)">
      <seq>ccaagattccagtagtagcttaaaaaaaaatagtcatattatttttggagatttagagtcatttgtgttgcctatgatgtttgaatcatgtcatcaacttgaggaatttttatctttttctccctactcagaatttgaactcgagacctctgattaaagttggagcaacctcacctcaccattgcaccacaattggttacgtgaagggtatatcaattgtttcttagttttgatattttgaagaattaattattgagtactttatttcaagagaggtgagaaattaagggtatagagtagtattatttatgtttcttagtaaaagaggtggttgtttaaactttaatgtttagatgaatgaggatcgtagagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17028" stop="16054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16728" g_stop="16355" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="385"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E394892" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16728" e_stop="16355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGT-AATTATGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGCTCGTAGAGTTT</genome_strand>
        <mrna_strand>CCAAGATTCCAGTAGTAGCTTAAAAAAAAATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGTAAAAGAGGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGATCGTAGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298528" ref_strand="+" ref_description="SGN-E298528 [cLET-41-D1]">
      <seq>ccaccacaacaccagctaaccaaccaaccattgccatggctatggccatcaccacggccttacagttacagtcacttccttcttccttccctcttcttcgctctccctttatctctttttccttttccctttccctcatttgcccacgcttccactctcccaaaacctccgtaaaatcatcagtacttcccttgaagggaattcagtgcatcaagaatgaagtgggagctgacccaaaaaaaggtgtcagtgtttacaagcctaaatcataccaagtccttgtttctgatgccgcagattctctattttatgcccttaatgacggaaagaccagactcgaaattgacttcccgcccttgcccaccagcatttcttcttataaggggtcttcggatgagttcagtgatgccaatatccaacttgtactagctgttgttaagaagcttcaggaaaagatggaaactagagcttgtgtggtgtttcccgacaaaccagaaaagcgtagggccagcgatcttttcaaagcagctcttgactcgatagatgacattaccattggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21333" stop="18804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21033" g_stop="20682" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20681" i_stop="19559" i_length="1123">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19558" g_stop="19528" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="383" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19527" i_stop="19354" i_length="174">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19353" g_stop="19261" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="476" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19260" i_stop="19170" i_length="91">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19169" g_stop="19107" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="539" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E298528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21033" e_stop="20682"/>
          <exon e_start="19558" e_stop="19528"/>
          <exon e_start="19353" e_stop="19261"/>
          <exon e_start="19169" e_stop="19107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACAACACCAGCTAACCAACCAACCATTGCCATGGCTATGGCCATCACCACGGCCTTACAGTTACAGTCACTTCCTTCTTCCTTCCCTCTTCTTCGCTCTCCCTTTATCTCTTTTTCCTTTTCCCTTTCCCTCATTTGCCCACGCTTCCACTCTCCCAAAACCTCCGTAAAATCATCAGTACTTCCCTTGAAGGGAATTCAGTGCATCAAGAATGAAGTGGGAGCTGACCCAAAAAAAGGTGTCAGTGTTTACAAGCCTAAATCATACCAAGTCCTTGTTTCTGATGCCGCAGATTCTCTATTTTATGCCCTTAATGACGGAAAGACCAGACTCGAAATTGACTTCCCGTAATTCTCCATCTCATTCGTCATTACTACTGATTAATGCTTGTGTGGGTGTTTTCAAGATTCCTATTTAGTTTGCCTGATAATACTTGTGCTATAGCTGTTTGCTTCTTACTTTCAACAACTTCTCATAATTGTGTATTGGAATGAAATTGGGTCTGCTACTTTGGAATTTAGGTGTAGCAAAAGTAGTTACTTCGTCTGTGTATTTTCTGCTGCAAAGGTTCCTTATTTGTGCTTCTTTACTTGTTACTATGTACTATCTAGGAAAGTTGAAATTATTCCAACTCTAAATCACCCAAATGGAACACAAAGTTGAAATCTTTTGTATCAAAACACTGTCAAGGCAGTGGGGGATCAAGTGGTGGGCTGGACTTGTAATCACTTTTTATATGTAAAAAAAAGGGTCCAAATGAGCACCTTCCTCCCACCAGGGGAATTTTCCAGCATAAGGACAGAATGTCTACAAGTATAATTTGTAGGTTACATTTTTATACATATGAATAGGTGATCTAGATTCTGTTGCAATTCCTATTATTGTTTATTTGATAACTTTTTTAAGTGATGAATATGGTTCTTGTTATAGAAAATGACCAAAAGTAAAGGAAGTTGAGTGTTTATGTTTTGTTTTTATTAAAGCTGAAATTTATGCTAAAAGTGATGAACACTTGTCATAATCTAATCTAAAGTCTCATTTTTAAATCAGTTACAGATCATAGCGCCATCATATTTTAGATTGACGACTTAGGGTGTTAAGTTATATTTAATTTTCTCTGAAAATATTCAGCTGAATGTATCCTTTATTGGAAAATTTGTTATGTCCTTCTGTATTTGAACAGATCCATACTGTATTCTGGAATATGTTCGTATGAGGTCATGTAAAATGAGTTCCTTCTCCCAAAGATTAAGTCAGGTCGTGTTCCAAATCAGAACACTTCAAAGTTTTTCTGGTTGTTGTCAGCTGTGTATTAACTCTTGATGTTGAATTGTCAATACTTTCGTGAAGTTTGATAGGAATATAACCTTATTGATTACATGCTTATTATGTCAATAATAAGTTTGTCATAGCTTCTTTCCTGACAATGTTTCCTGTTTGTTTCAACGCTCCATTGGTTTACATCTTCAGGCCCTTGCCCACCAGCATTTCTTCTTATAAGGTATCATTTTAACTTGTCATAAATTTTGATATTTTAAGTACCTTGCTGATGACATCATATTGTTGTCGGTAGTCATTCTATTTTTCTGGATAACTATCATCTCTCATATTTTGCATATTTCTAATTATGTGACCTTGCAATGAGCTCATCTCTCAAATTCCTGAAAATGTGTAGGGGTCTTCGGATGAGTTCAGTGATGCCAATATCCAACTTGTACTAGCTGTTGTTAAGAAGCTTCAGGAAAAGATGGAAACTAGAGCTTGTGTGGTGAGAAGAAACTTTGTCATTCTGTCTTTGTACAGGCTATGATTCACTGAAATGCACAGAAGCAAATCTGATAGGATCCCTCAATTTGTAGGTGTTTCCCGACAAACCAGAAAAGCGTAGGGCCAGCGATCTTTTCAAAGCAGCTCTTGACTCG</genome_strand>
        <mrna_strand>CCACCACAACACCAGCTAACCAACCAACCATTGCCATGGCTATGGCCATCACCACGGCCTTACAGTTACAGTCACTTCCTTCTTCCTTCCCTCTTCTTCGCTCTCCCTTTATCTCTTTTTCCTTTTCCCTTTCCCTCATTTGCCCACGCTTCCACTCTCCCAAAACCTCCGTAAAATCATCAGTACTTCCCTTGAAGGGAATTCAGTGCATCAAGAATGAAGTGGGAGCTGACCCAAAAAAAGGTGTCAGTGTTTACAAGCCTAAATCATACCAAGTCCTTGTTTCTGATGCCGCAGATTCTCTATTTTATGCCCTTAATGACGGAAAGACCAGACTCGAAATTGACTTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTGCCCACCAGCATTTCTTCTTATAAG..............................................................................................................................................................................GGGTCTTCGGATGAGTTCAGTGATGCCAATATCCAACTTGTACTAGCTGTTGTTAAGAAGCTTCAGGAAAAGATGGAAACTAGAGCTTGTGTG...........................................................................................GTGTTTCCCGACAAACCAGAAAAGCGTAGGGCCAGCGATCTTTTCAAAGCAGCTCTTGACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554248" ref_strand="-" ref_description="SGN-E554248 [cTSC-3-L10]">
      <seq>agcatagcaagaagcaggcatgaaagcatgagaagttcggaaagtggcactgaaactcagagtatagaagaactggagatgctcttggaagcttattttgttgtcattgacagcaccctcaacaagttaacatcgttgaaggagtatattgatgataccgaagatttcatcaacattcaactggataatgtacggaatcagcttattcaatttgagttgctacttacaactgcaacctttgtggttgccatctttggggttgtggcaggaatttttgggatgaattttgaaatacccatgtttaatgaaccaaatgcattcaaatgggtcttaataattacaggtgtaactggagcagtgatattctttgcatttttatggttcttcaaatatagaagattgatgccactgtagattctcaacagcatggacggcctgctggtgatatttaaagccatttgacagtggatcctattaatgaaataaatacacgagcctacgagaaataagtgtatctgtcgatgttatgccagaaaaggtgatggatctactgaattatgtggtatctaatacgactggccgtatagcctaatagtagcttcaaagtttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22620" stop="21150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22320" g_stop="22186" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22185" i_stop="22108" i_length="78">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22107" g_stop="22060" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="183" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22059" i_stop="21880" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21879" g_stop="21450" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="613" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E554248" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22320" e_stop="22186"/>
          <exon e_start="22107" e_stop="22060"/>
          <exon e_start="21879" e_stop="21450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATAGCAAGAAGCAGGCATGAAAGCATGAGAAGTTCGGAAAGTGGCACTGAAACTCAGAGTATAGAAGAACTGGAGATGCTCTTGGAAGCTTATTTTGTTGTCATTGACAGCACCCTCAACAAGTTAACATCGGTATCTACTACAGTCTTACTGTGCATCCTTTCATCTTGTATTCCTTTTCTTAATCCAGCTTATTTTTTTCTGATACAGTTGAAGGAGTATATTGATGATACCGAAGATTTCATCAACATTCAACTGGTATGCATCATACATTCAAGTTGGTTTCAAATTGATTTTACTTTGCATTAAAACCTTGACTTGTTGAAACACACAGTTACTAATAGTTTGATTGTTTTGTTTTCATGTATCATGGAGAATTGTTGTTACAGTAACTGTGTACACGTCATATAAACTTGGTTGATGATATTTTATTTGCAGGATAATGTACGGAATCAGCTTATTCAATTTGAGTTGCTACTTACAACTGCAACCTTTGTGGTTGCCATCTTTGGGGTTGTGGCAGGAATTTTTGGGATGAATTTTGAAATACCCATGTTTAATGAACCAAATGCATTCAAATGGGTCTTAATAATTACAGGTGTAACTGGAGCAGTGATATTCTTTGCATTTTTATGGTTCTTCAAATATAGAAGATTGATGCCACTGTAGATTCTCAACAGCATGGACGGCCTGCTGGTGATATTTAAAGCCATTTGACAGTGGATCCTATTAATGAAATAAATACACGAGCCTACGAGAAATAAGTGTATCTGTCGATGTTATGCCAGAAAAGGTGATGGATCTACTGAATTATGTGGTATCTAATACGACTGGCCGTATAGCCTAATAGTAGCTTCAAAGTTTGTAG</genome_strand>
        <mrna_strand>AGCATAGCAAGAAGCAGGCATGAAAGCATGAGAAGTTCGGAAAGTGGCACTGAAACTCAGAGTATAGAAGAACTGGAGATGCTCTTGGAAGCTTATTTTGTTGTCATTGACAGCACCCTCAACAAGTTAACATCG..............................................................................TTGAAGGAGTATATTGATGATACCGAAGATTTCATCAACATTCAACTG....................................................................................................................................................................................GATAATGTACGGAATCAGCTTATTCAATTTGAGTTGCTACTTACAACTGCAACCTTTGTGGTTGCCATCTTTGGGGTTGTGGCAGGAATTTTTGGGATGAATTTTGAAATACCCATGTTTAATGAACCAAATGCATTCAAATGGGTCTTAATAATTACAGGTGTAACTGGAGCAGTGATATTCTTTGCATTTTTATGGTTCTTCAAATATAGAAGATTGATGCCACTGTAGATTCTCAACAGCATGGACGGCCTGCTGGTGATATTTAAAGCCATTTGACAGTGGATCCTATTAATGAAATAAATACACGAGCCTACGAGAAATAAGTGTATCTGTCGATGTTATGCCAGAAAAGGTGATGGATCTACTGAATTATGTGGTATCTAATACGACTGGCCGTATAGCCTAATAGTAGCTTCAAAGTTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287784" ref_strand="+" ref_description="SGN-E287784 [cLES-19-K7]">
      <seq>tcgtagattgaaaagcaggcttgttgctttgactcgtagagttcagaaggttagagatgagatagagcagcttatggatgatgatggagacatggctgagatgtacctcactgagaagaaaaggcggatggaattgtcttgctatggagatcaatcattgcttggctacaggtcaacagatggtgcattgtctttgtctgctccagtttcccctgtttcttcaccccctgagagcaggaggcttgaaaaaagcttgagcatagcaagaagcaggcatgaaagcatgagaagttcggaaagtggcactgaaactcagagtatagaagaactggagatgctcttggaagcttattttgttgtcattgacagcaccctcaacaagttaacatcgttgaaggagtatattgatgataccgaagatttcatcaacattcaactggataatgtacggaatcagcttattcaatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22963" stop="21547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22663" g_stop="22615" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22614" i_stop="22528" i_length="87">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22527" g_stop="22186" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="391" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22185" i_stop="22108" i_length="78">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22107" g_stop="22060" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="439" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22059" i_stop="21880" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21879" g_stop="21847" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="472" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E287784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22663" e_stop="22615"/>
          <exon e_start="22527" e_stop="22186"/>
          <exon e_start="22107" e_stop="22060"/>
          <exon e_start="21879" e_stop="21847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAGATTGAAAAGCAGGCTTGTTGCTTTGACTCGTAGAGTTCAGAAGGTATCCTAGTTATTTATTGTTTTTTTGGAATTTCCTAGCACAAGTTACTGATTATATTATCTTAACTTCCCACCATCTGTTATCTAGGTTAGAGATGAGATAGAGCAGCTTATGGATGATGATGGAGACATGGCTGAGATGTACCTCACTGAGAAGAAAAGGCGGATGGAATTGTCTTGCTATGGAGATCAATCATTGCTTGGCTACAGGTCAACAGATGGTGCATTGTCTTTGTCTGCTCCAGTTTCCCCTGTTTCTTCACCCCCTGAGAGCAGGAGGCTTGAAAAAAGCTTGAGCATAGCAAGAAGCAGGCATGAAAGCATGAGAAGTTCGGAAAGTGGCACTGAAACTCAGAGTATAGAAGAACTGGAGATGCTCTTGGAAGCTTATTTTGTTGTCATTGACAGCACCCTCAACAAGTTAACATCGGTATCTACTACAGTCTTACTGTGCATCCTTTCATCTTGTATTCCTTTTCTTAATCCAGCTTATTTTTTTCTGATACAGTTGAAGGAGTATATTGATGATACCGAAGATTTCATCAACATTCAACTGGTATGCATCATACATTCAAGTTGGTTTCAAATTGATTTTACTTTGCATTAAAACCTTGACTTGTTGAAACACACAGTTACTAATAGTTTGATTGTTTTGTTTTCATGTATCATGGAGAATTGTTGTTACAGTAACTGTGTACACGTCATATAAACTTGGTTGATGATATTTTATTTGCAGGATAATGTACGGAATCAGCTTATTCAATTTGAG</genome_strand>
        <mrna_strand>TCGTAGATTGAAAAGCAGGCTTGTTGCTTTGACTCGTAGAGTTCAGAAG.......................................................................................GTTAGAGATGAGATAGAGCAGCTTATGGATGATGATGGAGACATGGCTGAGATGTACCTCACTGAGAAGAAAAGGCGGATGGAATTGTCTTGCTATGGAGATCAATCATTGCTTGGCTACAGGTCAACAGATGGTGCATTGTCTTTGTCTGCTCCAGTTTCCCCTGTTTCTTCACCCCCTGAGAGCAGGAGGCTTGAAAAAAGCTTGAGCATAGCAAGAAGCAGGCATGAAAGCATGAGAAGTTCGGAAAGTGGCACTGAAACTCAGAGTATAGAAGAACTGGAGATGCTCTTGGAAGCTTATTTTGTTGTCATTGACAGCACCCTCAACAAGTTAACATCG..............................................................................TTGAAGGAGTATATTGATGATACCGAAGATTTCATCAACATTCAACTG....................................................................................................................................................................................GATAATGTACGGAATCAGCTTATTCAATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374743" ref_strand="+" ref_description="SGN-E374743 [TUS-14-P10](-)">
      <seq>aaatgttaaatttggggttacttgtgtttattcaccttttttaagtgatccgtacaaagaccttgaggattcaacctgatgcttttgaatttgatgttaaaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcaaaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgaaaggtgaaacaaaaaatgcagaaatggaaatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattatttgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatttggattagctcacatgcccgttttatgtattattttcgatcattatgtttttgtcaaataccctaaaacccatccatcattttcaaactcaaaaatggtttgaggtttttgtatatactcaaaggagggagttgtatattttgtacataaatggaaccgttccccctctgtatttatcaattttaatcatgtaatgatatcaatggaaaatatttttatatagttccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30595" stop="28377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30296" g_stop="30170" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="197" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28684" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="631" r_length="434" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="663"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E374743" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30296" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTAC-AAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTGTATATTTTGTACATAGATGGAACCGTTCCACCTCTGTATTTATCAATTCTAATCATGTAATGATATCAATGGAAAATATTATTATATA</genome_strand>
        <mrna_strand>AAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTTTTTAAGTGATCCGTACAAAGACCTTGAGGATTCAACCTGATGCTTTTGAATTTGATGTTAAAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAAAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAAAGGTGAAACAAAAAATGCAGAAATGGAAATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTTGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATTTGGATTAGCTCACATGCCCGTTTTATGTATTATTTTCGATCATTATGTTTTTGTCAAATACCCTAAAACCCATCCATCATTTTCAAACTCAAAAATGGTTTGAGGTTTTTGTATATACTCAAAGGAGGGAGTTGTATATTTTGTACATAAATGGAACCGTTCCCCCTCTGTATTTATCAATTTTAATCATGTAATGATATCAATGGAAAATATTTTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269815" ref_strand="-" ref_description="SGN-E269815 [cLEM-17-A22]">
      <seq>aatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatatactcaaaggagggagttgtatattttgtacatagatggaaccgttccacctctgtatttatcaattctaatcatgtaatgatatcaatggaaaatattattataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29431" stop="28384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29117" g_stop="28684" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="453" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E269815" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269815" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29117" e_stop="28684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTGTATATTTTGTACATAGATGGAACCGTTCCACCTCTGTATTTATCAATTCTAATCATGTAATGATATCAATGGAAAATATTATTATATA</genome_strand>
        <mrna_strand>ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTGTATATTTTGTACATAGATGGAACCGTTCCACCTCTGTATTTATCAATTCTAATCATGTAATGATATCAATGGAAAATATTATTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705488" ref_strand="+" ref_description="SGN-E705488 [FA27BB10]">
      <seq>tgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatatactcgaaggagggagttgtatattttgtacatagatggaaccgtttcacctctgtatttatcaattctaatcatgtaatgataatcatgggaaaatattattnatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30908" stop="28384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30608" g_stop="30170" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="508" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28689" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="938" r_length="430" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="944" polyA_stop="954"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E705488" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30608" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTGTATATTTTGTACATAGATGGAACCGTTCCACCTCTGTATTTATCAATTCTAATCATGTAATGAT-ATCAATGGAAAATATTATT</genome_strand>
        <mrna_strand>TGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCGAAGGAGGGAGTTGTATATTTTGTACATAGATGGAACCGTTTCACCTCTGTATTTATCAATTCTAATCATGTAATGATAATCATGGGAAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706193" ref_strand="+" ref_description="SGN-E706193 [FA29BB04]">
      <seq>gacggtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatatactcaaaggaagggagttgtatattttgtacatagatgggaaccgttccaccctcctgaattaatcaattcctaatcctggaaatgatatccatgggaaaatattatttataaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30909" stop="28384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30611" g_stop="30170" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="511" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28740" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="892" r_length="381" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="950" polyA_stop="960"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E706193" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30611" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCT-AAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGG-AGGGAGTTGTATATTTTGTACATAGAT-GGAACCGTTCCACC</genome_strand>
        <mrna_strand>GACGGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAAGGGAGTTGTATATTTTGTACATAGATGGGAACCGTTCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722196" ref_strand="+" ref_description="SGN-E722196 [FC16CB04]">
      <seq>atcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatatactcaaaggagggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30933" stop="28472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30633" g_stop="30170" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="533" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28772" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="879" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E722196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30633" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTG</genome_strand>
        <mrna_strand>ATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706964" ref_strand="+" ref_description="SGN-E706964 [FA31CG02]">
      <seq>attttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgccccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatatactccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30920" stop="28482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30620" g_stop="30170" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="520" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28782" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="858" r_length="338" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E706964" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30620" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATG-CCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCT-AAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAG</genome_strand>
        <mrna_strand>ATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722631" ref_strand="+" ref_description="SGN-E722631 [FC17DD08]">
      <seq>gatcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatatactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30933" stop="28485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30634" g_stop="30170" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="533" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28785" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="866" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E722631" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30634" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCA</genome_strand>
        <mrna_strand>GATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTT-AAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724384" ref_strand="+" ref_description="SGN-E724384 [FC23DH01]">
      <seq>atcggccgaattgatcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30933" stop="28489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30634" g_stop="30170" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="477" r_length="465" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="546" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28789" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="875" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E724384" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30634" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATA</genome_strand>
        <mrna_strand>GATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708323" ref_strand="+" ref_description="SGN-E708323 [FA35BG11]">
      <seq>cctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatcttcaaactcaaagatggtttgaggtttctgtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30897" stop="28490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30598" g_stop="30170" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="498" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28790" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="826" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E708323" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30598" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATAT</genome_strand>
        <mrna_strand>CCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725004" ref_strand="+" ref_description="SGN-E725004 [FC25DB09]">
      <seq>aatcggccgaattggcatcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaacccatccatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30935" stop="28525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30634" g_stop="30170" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="480" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="549" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28825" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="842" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E725004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30634" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATC</genome_strand>
        <mrna_strand>CATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697717" ref_strand="+" ref_description="SGN-E697717 [FA03DG06]">
      <seq>ggctgcaggttcccctgtttccctatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataatttttaaaaataaacgtggtggtatctggattagctcacatgcccgttttatgtattatcttcgatcattatgtttctgtcaaataccctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30914" stop="28538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30614" g_stop="30170" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="454" r_length="445" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="523" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28838" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="803" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E697717" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30614" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAA</genome_strand>
        <mrna_strand>TTCCCCTGTTTCCCTATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374744" ref_strand="+" ref_description="SGN-E374744 [TUS-14-P10]">
      <seq>attcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatccttatatataattttttaaaaaataaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30789" stop="28614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30489" g_stop="30170" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="389" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28914" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="595" r_length="206" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E374744" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30489" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAA-TTTTT-AAAAATAAACGTG</genome_strand>
        <mrna_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTTAAAAAATAAACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722447" ref_strand="+" ref_description="SGN-E722447 [FC17BC02]">
      <seq>gattagcctcgataagtcataaaatattcagatatattttaattatatttcttaaaattttagtgacacgtcatctcttcatcaaccactaccattctaccatatattattttttttctcttatccctttttcttctcttttacatacacttatttaaaccgactctgcttaacgctaacaagcatcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccagattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattattcgtctcacatcaatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31116" stop="28640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30817" g_stop="30170" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="717" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28940" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="895" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E722447" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30817" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGCCTCGATAAGTCATAAAATATTCAGATATATTTTAATTATATTTCTTAAAATTTTAGTGACACGTCATCTCTTCATCAACCACTACCATTCTACCATATATTATTTTTTTTCTCTTATCCCTTTTTCTTCTCTTTTACATACACTTATTTAAACCGACTCTGCTTAACGCTAACAAGCATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTT</genome_strand>
        <mrna_strand>GATTAGCCTCGATAAGTCATAAAATATTCAGATATATTTTAATTATATTTCTTAAAATTTTAGTGACACGTCATCTCTTCATCAACCACTACCATTCTACCATATATTATTTTTTTTCTCTTATCCCTTTTTCTTCTCTTTTACATACACTTATTTAAACCGACTCTGCTTAACGCTAACAAGCATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722958" ref_strand="+" ref_description="SGN-E722958 [FC18DE07]">
      <seq>aatcggccgaattgatcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaaaaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttaaacagcttgctcttcagtatcacccggatgtatgcaaaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatgacgatgaagccatgagaggagtgaatgatccaaattatgatatgtgggaagaatggatgggatgggaaggagcaggcattcgggattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30933" stop="28658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30634" g_stop="30170" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="478" r_length="465" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="547" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="28958" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="707" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E722958" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30634" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="28958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATT</genome_strand>
        <mrna_strand>GATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAAACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAAACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAAAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAAATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202178" ref_strand="+" ref_description="SGN-E202178 [cLEC-7-J11]">
      <seq>attcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttgagaggtgaaacaaagaatgcagaaatggagatttacgaagaatatgacgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30789" stop="28747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30489" g_stop="30170" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="389" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="29047" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="460" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E202178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30489" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="29047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGA</genome_strand>
        <mrna_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250884" ref_strand="+" ref_description="SGN-E250884 [cLEG-13-G13]">
      <seq>gctaacaagcatcttcctattctattttcttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcaccccgatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30943" stop="28800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30643" g_stop="30170" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="543" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="29100" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="561" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E250884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30643" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="29100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACAAGCATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTG</genome_strand>
        <mrna_strand>GCTAACAAGCATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCCGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202158" ref_strand="+" ref_description="SGN-E202158 [cLEC-7-O18]">
      <seq>attcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatactgtgatgagtaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30789" stop="28800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30489" g_stop="30170" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="389" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29117" g_stop="29100" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="407" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E202158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30489" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
          <exon e_start="29117" e_stop="29100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATGTAAGTTTATTTATTACCGATATCGACATTTTTTTTGGGTATACTAATTTATTTATTTCGTGTTTTATAGTAATTTATAAAATTTTGAATGATAGGTTGAGTTTAGCTTTAATTTTAATTTTAAACAAAAGAAGTTGTATGAATTAAAGCAGAGAATATAGGAACCAAATTGAGGAAGATAATGGTTGGATTCTTGATTGTGAGATTTGTATTGTTTTTAATGTTCTTCCTAATCTATGCTTATAATAATTAATTAACTAATTAATAGTAATAAGGAAAAGTGGGTTTTCATTTGCTCCACTAGATGAGCTTCAGGGGATTATAAAACTTTATTCAATAAACAAATACTTTAAGTAGGTATCAATCAATTCATATTTGGATTATTTAATCTTGTAGGGAACCTGTGAATATTTTTTAGGCCAAAAGTCCTTTTCACTTTTGTTTGTATAAGTTAAGAGGTGCCAATTACGTTATCTAATAATATGTCACTATCCCATTTTCAATTATTATTACGTACTAGAACTTGTTTGTAGGTCCCTTAATTCAATTATTTTCAAATCATGTTTTGTAATATGTTATCTGGACATATCAAACGTTTCAGCGTTAGGTTCATTTTTTTAGTTTATCTGATGACGTAGCTCATCTATCAATGTCTGCGCCCAATGTCCAATTTTGGACCATTTTTAGCTCATGGATTAGTTCTAATGTGTAATTTTTGATGCAGACTGTGATGAGTAACTTG</genome_strand>
        <mrna_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATGAGTAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291922" ref_strand="+" ref_description="SGN-E291922 [cLET-7-G13]">
      <seq>ttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggtgtaaaaaaatttnttttncatctgcgtaatttgaaagacgaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgtttgaagaatcgcgcaaacaaaaagaccaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccgtacaagaccttgaggattcaacctgatgcttctgaatctgatgttagaaaggcttttagacagcttgctcttcagtatcacccggatgtatgcagaggaagtaattgcggtatacaatttcaccaaatcaatgatgcatacgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30895" stop="29542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30595" g_stop="30170" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29910" g_stop="29842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="505" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E291922" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30595" e_stop="30170"/>
          <exon e_start="29910" e_stop="29842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGT-T--AAAAA------TT-CATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAGGTATATTTTCTCTCTCCCTTCTGTTATAAAATAACGTGCTGGTACGATAGACCAGATATCTCGTGAAATTATTGGCAGGATGAAGGAGAAACATGGGATTATAATAAAATTGAATTTTTTATCGAATAAAATAAAAGTTAAAATAATGAATCAATTGAATAGTTAAGATTTTTTTTAATTTTTCTTTGTTATACTATTTTAGTTTTTGTTGAGGCTCGACATTGTTAATTAACAAAATTGTTGTTTAATTGAATTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT</genome_strand>
        <mrna_strand>TTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTGTAAAAAAATTTNTTTTNCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACCAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG...................................................................................................................................................................................................................................................................TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298780" ref_strand="+" ref_description="SGN-E298780 [cLET-44-K21]">
      <seq>cttcccctgtttttccatctttttgacctttatatcaacaattattattcttttttaataaatatattagtctcattcatatttggtttgccgtatttgatcaggtctcgttgaatacttcaattaattcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagacgaatttttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggttctgcctctgcttcatggattcgcttgaagaatcgcgcagacaaaaagacgaagaggagtgagaatgttaaatttggggttacttgtgtttattcaccttctctgagtgatccggacaagaccttgaggattcaacctgatgcttctgaatctgatgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30915" stop="29898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30615" g_stop="30198" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E298780" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30615" e_stop="30198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAA-TTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAG</genome_strand>
        <mrna_strand>CTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGCTTGAAGAATCGCGCAGACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGGACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374737" ref_strand="+" ref_description="SGN-E374737 [TUS-14-N12]">
      <seq>attcataatctatttaaacatcctaatctgtcggttaaaaattcatctgcgtaatttgaaagactaattttttttaaaaaaaatcaatggcgacggctatgggaatgatgaggaatgttgggggttatggatctgcctctgcttcatggattcgtttgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30789" stop="30027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30489" g_stop="30327" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E374737" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30489" e_stop="30327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAA</genome_strand>
        <mrna_strand>ATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACTAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGATCTGCCTCTGCTTCATGGATTCGTTTGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540806" ref_strand="+" ref_description="SGN-E540806 [TUS-61-E10](-)">
      <seq>ctatatgataccagcattagctttagacttcagtatggcaccagcagtcgctttagttattcagctgactatttattacttggttgttttggatatcatgattcatatctgaatgaagctatgccttggttccatcttatcaagagtgactgctatgttagacgtgcactcctatcgcttgtccgtgttttacattcagttcttcactctatgagggctcatggatgtattaatttacaaaactgcagggtttaccaacttttgggagaagatggcacttactatggtgtacgatttgggaagaatatcccttgggtaacagagtttccttttggagtaataagagatcctcagtatgtcggcagcattttgagtttgctagcttgcctctcttgggttcctttcttgtatattttcttatgggtattgggatatgcatttatgatacaaattgaatccaaggaagatccagctactcgtgcaaagccgctttcttgagtctagagaagatacatctgccaacttgaaggaactagtgctgcttgcttctgcattccagagatggaatcctctttaataaagttcttgcatcaatggtttcttgagttcttgattccttttttaaaatcagactcacgcaatattttggatgattctgtaagtttttttagtttttctaaatagccagcatagctttagaccctatgtcttttaggatttgaataaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35216" stop="36436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35406" g_stop="36135" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="753"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E540806" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35406" e_stop="36135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAAGCTATGCCTTGGTTCCATCTTATCAAGAGTGACTGCTATGTTAGACGTGCACTCCTATCGCTTGTCCGTGTTTTACATTCAGTTCTTCACTCTATGAGGGCTCATGGATGTATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCA-GCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAA</genome_strand>
        <mrna_strand>CTATATG-ATACCAGCATTAGCTTTAGACTTCAGTATGGCACCAGCAGTCGCTTTAGTTATTCAGCTGACTATTTATTACTTGGTTGTTTTGGATATCATGATTCATATCTGAATGAAGCTATGCCTTGGTTCCATCTTATCAAGAGTGACTGCTATGTTAGACGTGCACTCCTATCGCTTGTCCGTGTTTTACATTCAGTTCTTCACTCTATGAGGGCTCATGGATGTATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCACGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254469" ref_strand="+" ref_description="SGN-E254469 [cLEG-27-L4]">
      <seq>ccttttcatctttggccatgttccttaattttagggtttaccaacttttgggagaagatggcacttactatggtgtacgatttgggaagaatatcccttgggtaacagagtttccttttggagtaataagagatcctcagtatgtcggcagcattttgagtttgctagcttgcctctcttgggttcctttcttgtatattttcttatgggtattgggatatgcatttatgatacaaattgaatccaaggaagatccagctactcgtgcaaagccgctttcttgagtctagagaagatacatctgccaacttgaaggaactagtgctgcttgcttctgcattccagagatggaatcctctttaataaagttcttgcatcaatggtttcttgagttcttgattccttttttaaaatcagactcagcaatattttggatgattctgtaagtttttttagtttttctaaatagccagcatagctttagaccctatgtcttttaggatttgaataaaaaaatccaggcaataaagagcaattttttttgtgtgaatggttgttgagaacacttgtatgttctattttgacacagaaaaactgaatgatttgtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5379" stop="36531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35412" g_stop="35445" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35446" i_stop="35654" i_length="209">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35655" g_stop="36231" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="611" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E254469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35412" e_stop="35445"/>
          <exon e_start="35655" e_stop="36231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAAGCTATGCCTTGGTTCCATCTTATCAAGAGTGACTGCTATGTTAGACGTGCACTCCTATCGCTTGTCCGTGTTTTACATTCAGTTCTTCACTCTATGAGGGCTCATGGATGTATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGAATGGTTGTTGAGAACACTTGTATGTTCTATTTTGACACAGAAAAACTGAATGATTTGTCAGC</genome_strand>
        <mrna_strand>CCTTTTCATCTTTGGCCATGTTCCTTAATTTTAG.................................................................................................................................................................................................................GGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGAATGGTTGTTGAGAACACTTGTATGTTCTATTTTGACACAGAAAAACTGAATGATTTGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254241" ref_strand="+" ref_description="SGN-E254241 [cLEG-27-O19]">
      <seq>ccttttcatctttggccagttccttaattttagggtttaccaacttttgggagaagatggcacttactatggtgtacgatttgggaagaatatcccttgggtaacagagtttccttttggagtaataagagatcctcagtatgtcggcagcattttgagtttgctagcttgcctctcttgggttcctttcttgtatattttcttatgggtattgggatatgcatttatgatacaaattgaatccaaggaagatccagctactcgtgcaaagccgctttcttgagtctagagaagatacatctgccaacttgaaggaactagtgctgcttgcttctgcattccagagatggaatcctctttaataaagttcttgcatcaatggtttcttgagttcttgattccttttttaaaatcagactcagcaatattttggatgattctgtaagtttttttagtttttctaaatagccagcatagctttagaccctatgtcttttaggatttgaataaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5379" stop="36437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35412" g_stop="35444" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35445" i_stop="35654" i_length="210">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35655" g_stop="36137" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="516" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E254241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35412" e_stop="35444"/>
          <exon e_start="35655" e_stop="36137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAAGCTATGCCTTGGTTCCATCTTATCAAGAGTGACTGCTATGTTAGACGTGCACTCCTATCGCTTGTCCGTGTTTTACATTCAGTTCTTCACTCTATGAGGGCTCATGGATGTATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAAT</genome_strand>
        <mrna_strand>CCTTTTCATCTTTGGCCAGTTCCTTAATTTTAG..................................................................................................................................................................................................................GGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375548" ref_strand="+" ref_description="SGN-E375548 [TUS-34-H4]">
      <seq>ccttttcatctttggccagttccttaattttagggtttaccaacttttgggagaagatggcacttactatggtgtacgatttgggaagaatatcccttgggtaacagagtttccttttggagtaataagagatcctcagtatgtcggcagcattttgagtttgctagcttgcctctcttgggttcctttcttgtatattttcttatgggtattgggatatgcatttatgatacaaattgaatccaaggaagatccagctactcgtgcaaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5379" stop="36194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35412" g_stop="35444" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35445" i_stop="35654" i_length="210">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35655" g_stop="35894" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="273" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E375548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35412" e_stop="35444"/>
          <exon e_start="35655" e_stop="35894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAAGCTATGCCTTGGTTCCATCTTATCAAGAGTGACTGCTATGTTAGACGTGCACTCCTATCGCTTGTCCGTGTTTTACATTCAGTTCTTCACTCTATGAGGGCTCATGGATGTATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCC</genome_strand>
        <mrna_strand>CCTTTTCATCTTTGGCCAGTTCCTTAATTTTAG..................................................................................................................................................................................................................GGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375547" ref_strand="+" ref_description="SGN-E375547 [TUS-34-H4](-)">
      <seq>ggccagttccttaattttagggtttaccaacttttgggagaagatggcacttactatggtgtacgatttgggaagaatatcccttgggtaacagagtttccttttggagtaataagagatcctcagtatgtcggcagcattttgagtttgctagcttgcctctcttgggttccttttttgtatatttttttatgggtattgggatatgcatttatgatacaaattgaatccaaggaagatccagctactcgtgcaaagccgcttttttgagtttaaagaagatacatttgccaacttgaaggaactagtgctgcttgcttttgcattccaaagatggaatcctctttaataaagtttttgcatcaatggttttttgagtttttgattccttttttaaaatcagactcagcaatattttggatgattctgtaagtttttttagtttttttaaatagccagcatagctttagaccctatgttttttaggatttgaataaaaaaatccaggcaataaagagcaattttttttgtgtgaatggttgttgagaacacttgtatgttttattttgacacagaaaaactgaatgatttgtcagctgtttgtgcaaaatttttgaagtagcaaccttcgggtttgatgtggaggtaaaaataatgcagatatgatgtgatttatgattttagagaaaatataaggtaatttgaaaggtcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5392" stop="36647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35635" g_stop="36346" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="737"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E375547" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35635" e_stop="36346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGAATGGTTGTTGAGAACACTTGTATGTTCTATTTTGACACAGAAAAACTGAATGATTTGTCAGCTGTTTGTGCAAAATTTTCGAAGTAGCAACCTTCGGGTTTGATGTGGAGGTAAAAATAATGCAGATATGATGTGATTTATGATTTTAGAGAAAATATAAGGTAATTTGAAAGGTCA</genome_strand>
        <mrna_strand>GGCCAGTTCCTTAATTTTAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTTTTGTATATTTTTTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTTTTGAGTTTAAAGAAGATACATTTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTTTGCATTCCAAAGATGGAATCCTCTTTAATAAAGTTTTTGCATCAATGGTTTTTTGAGTTTTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTTTAAATAGCCAGCATAGCTTTAGACCCTATGTTTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGAATGGTTGTTGAGAACACTTGTATGTTTTATTTTGACACAGAAAAACTGAATGATTTGTCAGCTGTTTGTGCAAAATTTTTGAAGTAGCAACCTTCGGGTTTGATGTGGAGGTAAAAATAATGCAGATATGATGTGATTTATGATTTTAGAGAAAATATAAGGTAATTTGAAAGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250034" ref_strand="+" ref_description="SGN-E250034 [cLEG-4-H22]">
      <seq>gcttgggtaacagagtttccttttggagtaataagagatcctcagtatgtcggcagcattttgagtttgctagcttgcctctcttgggttcctttcttgtatattttcttatgggtattgggatatgcatttatgatacaaattgaatccaaggaagatccagctactcgtgcaaagccgctttcttgagtctagagaagatacatctgccaacttgaaggaactagtgctgcttgcttctgcattccagagatggaatcctctttaataaagttcttgcatcaatggtttcttgagttcttgattccttttttaaaatcagactcagcaatattttggatgattctgtaagtttttttagtttttctaaatagccagcatagctttagaccctatgtcttttaggatttgaataaaaaaatccaggcaataaagagcaattttttttgtgtgaaaaaaaaaaaaaaagcaattgatgcatctggaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35417" stop="36470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35716" g_stop="36169" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="469"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E250034" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35716" e_stop="36169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGA</genome_strand>
        <mrna_strand>GCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263531" ref_strand="-" ref_description="SGN-E263531 [cLEG-60-C12]">
      <seq>agccagggagatggtaaccaaaagtccagcagagcagtcaattactttgtatagccaattgttcaatattttccaacttgactcatatcaaaagttcttaggaggaaaaaggaaccacaaattattgttcaaatgtaaatccaggaaaagttagtaacatttggaccgcaaagttggactcggagatgcacgtgagaatgggatcttactagactcttaagaaattttcaacagcagccatactgggtcccctgcagaatggacttgctctgagttggctagattgagactgaattgtcctagaagcatttaagttgttgaatttgacaactttgtagaatactgagatgagattatgaaatatacaacttactgttctgttcactgactttatacaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37678" stop="36681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37378" g_stop="36981" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="415"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E263531" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263531" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37378" e_stop="36981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTCTGTTCACTGACTTTATACAA</genome_strand>
        <mrna_strand>AGCCAGGGAGATGGTAACCAAAAGTCCAGCAGAGCAGTCAATTACTTTGTATAGCCAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAACCACAAATTATTGTTCAAATGTAAATCCAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTCTGTTCACTGACTTTATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578154" ref_strand="-" ref_description="SGN-E578154 [LE08EH05]">
      <seq>ctactacttcagtcccttgctctaccactctcaattcctcaggacaaaccattactctcgatcttactgcnccgaaaacagtggaaaagcgcgatatgaagatgaatcacagtactactagtcctaccagtggcaatagcattagaacaacaacaacaacatcagcagcaggaggtgaatatcaaaataggccagagtttcaacagttcttgatagaacaaatggctacttccttgaccaaagatccaagtttcaaagcagcacttgctgccgccatatcaggaaaaatcctccaccataataatcagacagggagatggtaaacaaaagtccagcagagcagtcaactactttgtatagacaattgttcaatattttccaacttgactcatatcaaaagttcttaggaggaaaaaggaaacacaaattattgttcaaatgtaaatacaggaaaagttagtaacatttggaccgcaaagttggactcggagatgcacgtgagaatgggatcttactagactcttaagaaattttcaacagcagccatactgggtcccctgcagaatggacttgctctgagttggctagattgagactgaattgtcctagaagcatttaagttgttgaatttgacaactttgtagaatactgagatgagattatgaaatatacaacttactgttctgttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37984" stop="36695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37684" g_stop="36995" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="710"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E578154" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578154" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37684" e_stop="36995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTCTGTTCA</genome_strand>
        <mrna_strand>CTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACAAACCATTACTCTCGATCTTACTGCNCCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCACCATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTCTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249559" ref_strand="-" ref_description="SGN-E249559 [cLEF-56-H20]">
      <seq>aacatcagcagcaggaggtgaatatcaaaataggccagagtttcaacagttcttgatagaacaaatggctacttccttgaccaaagatccaagtttcaaagcagcacttgctgccgccatatcaggaaaaatcctccaacataataatcagacagggagatggtaaacaaaagtccagcagagcagtcaactactttgtatagacaattgttcaatattttccaacttgactcatatcaaaagttcttaggaggaaaaaggaaacacaaattattgttcaaatgtaaatacaggaaaagttagtaacatttggaccgcaaagttggactcggagatgcacgtgagaatgggatcttactagactcttaagaaattttcaacagcagccatactgggtcccctgcagaatggacttgctctgagttggctagattgagactgaattgtcctagaagcatttaagttgttgaatttgacaactttgtagaatactgagatgagattatgaaatatacaacttactgttatgtcccttgacttaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37827" stop="36681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37527" g_stop="37000" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="563"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E249559" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249559" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37527" e_stop="37000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTCT</genome_strand>
        <mrna_strand>AACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341768" ref_strand="+" ref_description="SGN-E341768 [cTOF-9-K19]">
      <seq>tcaaaaccagaatcaggtccaagtactaatacttccacagccagccgattaaatgtgacaactatcgcgggcactactacttcagtcccttgctctaccactctcaattcctcaggaccaaccattactctcgatcttactgcaccgaaaacagtggaaaagcgcgatatgaagatgaatcacagtactactagtcctaccagtggcaatagcattagaacaacaacaacaacatcagcagcaggaggtgaatatcaaaataggccagagtttcaacagttcttgatagaacaaatggctacttccttgaccaaagatccaagtttcaaagcagcacttgctgccgccatatcaggaaaaatcctccaacataataatcagacagggagatggtaaacaaaagtccagcagagcagtcaactactttgtatagacaattgttcaatattttccaacttgactcatatcaaaagttcttaggaggaaaaaggaaacacaaattattgttcaaatgtaaatacaggaaaagttagtaacatttggaccgcaaagttggactcggagatgcacgtgagaattgggatcttactagactcttaagaaattttcaacagcagccatactgggtcccctgcagaatggaccttgctctgagttggctagattgagactggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38057" stop="36782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37757" g_stop="37082" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E341768" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37757" e_stop="37082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAA-TGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGA-CTTGCTCTGAGTTGGCTAGATTGAGACT-GAATTG</genome_strand>
        <mrna_strand>TCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATTGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACCTTGCTCTGAGTTGGCTAGATTGAGACTGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347961" ref_strand="+" ref_description="SGN-E347961 [cTOF-31-P3]">
      <seq>caagagcttacttcagatgctcatttgcacctggttgccctgtcaagaaaaaggttcagagaagcattgaagatcagtctattgtggtagcaacatatgaaggagaacataaccatccacaaacctcaaaaccagaatcaggtccaagtactaatacttccacagccagccgattaaatgtgacaactatcgcgggcactactacttcagtcccttgctctaccactctcaattcctcaggaccaaccattactctcgatcttactgcaccgaaaacagtggaaaagcgcgatatgaagatgaatcacagtactactagtcctaccagtggcaatagcattagaacaacaacaacaacatcagcagcaggaggtgaatatcaaaataggccagagtttcaacagttcttgatagaacaaatggctacttccttgaccaaagatccaagtttcaaagcagcacttgctgccgccatatcaggaaaaatcctccaacataataatcagacagggagatggtaaacaaaagtccagcagagcagtcaactactttgtatagacaattgttcaatattttccaacttgactcatatcaaaagttcttaggaggaaaaaggaaacacaaattattgttcaaatgtaaatacaggaaaagttagtaacatttggaccgcaaagttggactcggagatgcacgtgagaatgggatcttactagactcttaagaaattttcaacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38288" stop="36842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37988" g_stop="37936" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37935" i_stop="37830" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37829" g_stop="37142" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="741" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E347961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37988" e_stop="37936"/>
          <exon e_start="37829" e_stop="37142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAGGTAAATTAAAACCCTAATTTGAGTGTTGACAATCATTGTAAAGAAAGAATTTGTCATGTTCATGTTTGCGCGCACGTTCTAATAGTGCATTTGGCATTTTTGACAGGTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAG</genome_strand>
        <mrna_strand>CAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAG..........................................................................................................GTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303885" ref_strand="+" ref_description="SGN-E303885 [cLEX-4-M5]">
      <seq>aagagtcctgttgcaagaaactcagagaggagcacataaaagcgaaagttacaattgtttctatgaagactgatgcatctgatacctctcttattgtaaaggatggttatcagtggagaaagtatggtcagaaagtaactagagacaacccttgtccaagagcttacttcagatgctcatttgcacctggttgccctgtcaagaaaaaggttcagagaagcattgaagatcagtctattgtggtagcaacatatgaaggagaacataaccatccacaaacctcaaaaccagaatcaggtccaagtactaatacttccacagccagccgattaaatgtgacaactatcgcgggcactactacttcagtcccttgctctaccactctcaattcctcaggaccaaccattactctcgatcttactgcaccgaaaacagtggaaaaagcgcgatatgaagatgaatcacagtactactagtcctaccagtggcaatagcattagaacaacaacaacaacatcagcagcaggaggtgaatatcaaaataagccagagtttcaacagttcttgatagaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38544" stop="37162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38244" g_stop="38153" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38152" i_stop="38053" i_length="100">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38052" g_stop="37936" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="209" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37935" i_stop="37830" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37829" g_stop="37462" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="578" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E303885" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38244" e_stop="38153"/>
          <exon e_start="38052" e_stop="37936"/>
          <exon e_start="37829" e_stop="37462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTTGTAAGTACATACTCTTATGAGAATGACACTGAGATACAGTTTAAGCTGTTAGTGAGAGCATACGACTAATTATGTCTTGGGATGTTAACTTATTTTGCAGATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGTCCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAGGTAAATTAAAACCCTAATTTGAGTGTTGACAATCATTGTAAAGAAAGAATTTGTCATGTTCATGTTTGCGCGCACGTTCTAATAGTGCATTTGGCATTTTTGACAGGTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGG-AAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAAT</genome_strand>
        <mrna_strand>AAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTT....................................................................................................ATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGTCCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAG..........................................................................................................GTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAAGCCAGAGTTTCAACAGTTCTTGATAGAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334070" ref_strand="+" ref_description="SGN-E334070 [cTOD-24-J17]">
      <seq>ttgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcagaaagcagttcgagtgacgaagagtcctgttgcaagaaactcagagaggagcacataaaagcgaaagttacaattgtttctatgaagactgatgcatctgatacctctcttattgtaaaggatggttatcagtggagaaagtatggtcagaaagtaactagagacaacccttgtccaagagcttacttcagatgctcatttgcacctggttgccctgtcaagaaaaaggttcagagaagcattgaagatcagtctattgtggtagcaacatatgaaggagaacataaccatccacaaacctcaaaaccagaatcaggtccaagtactaatacttccacagccagccgattaaatgtgacaactatcgcgggcactactacttcagtcccttgctctaccactctcaattcctcaggaccaaccattactctcgatcttactgcaccgaaaacagtggaaaagcgcgatatgaagatgaatcacagtactactagtcctaccagtgggcatagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38854" stop="37242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38554" g_stop="38153" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38152" i_stop="38053" i_length="100">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38052" g_stop="37936" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="519" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37935" i_stop="37830" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37829" g_stop="37542" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="807" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E334070" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38554" e_stop="38153"/>
          <exon e_start="38052" e_stop="37936"/>
          <exon e_start="37829" e_stop="37542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTTGTAAGTACATACTCTTATGAGAATGACACTGAGATACAGTTTAAGCTGTTAGTGAGAGCATACGACTAATTATGTCTTGGGATGTTAACTTATTTTGCAGATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGTCCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAGGTAAATTAAAACCCTAATTTGAGTGTTGACAATCATTGTAAAGAAAGAATTTGTCATGTTCATGTTTGCGCGCACGTTCTAATAGTGCATTTGGCATTTTTGACAGGTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATT</genome_strand>
        <mrna_strand>TTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTT....................................................................................................ATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGTCCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAG..........................................................................................................GTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGGCATAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210621" ref_strand="+" ref_description="SGN-E210621 [cLEC-68-A16]">
      <seq>ttttgaggagataaaaagaaagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcagaaagcagttcgagtgacgaagagtcctgttgcaagaaactcagagaggagcacataaaagcgaaagttacaattgtttctatgaagactgatgcatctgatacctctcttattgtaaaggatggttatcagtggagaaagtatggtcagaaagtaactagagacaacccttgntcaagagcttacttcagatgctcatttgcacctggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39187" stop="37652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38887" g_stop="38708" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38153" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="612" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38152" i_stop="38053" i_length="100">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38052" g_stop="37952" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="713" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E210621" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38887" e_stop="38708"/>
          <exon e_start="38584" e_stop="38153"/>
          <exon e_start="38052" e_stop="37952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTTGTAAGTACATACTCTTATGAGAATGACACTGAGATACAGTTTAAGCTGTTAGTGAGAGCATACGACTAATTATGTCTTGGGATGTTAACTTATTTTGCAGATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGTCCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTG</genome_strand>
        <mrna_strand>TTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTT....................................................................................................ATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGNTCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214367" ref_strand="+" ref_description="SGN-E214367 [cLEC-77-O15]">
      <seq>aagaaagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcagaaagcagttcgagtgacgaagagtcctgttgcaagaaactcagagaggagcacataaaagcgaaagttacaattgtttctatgaagactgatgcatctgatacctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39172" stop="37854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38872" g_stop="38708" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38154" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="596" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E214367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38872" e_stop="38708"/>
          <exon e_start="38584" e_stop="38154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCT</genome_strand>
        <mrna_strand>AAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283137" ref_strand="+" ref_description="SGN-E283137 [cLER-17-A6]">
      <seq>tttgtttctttaacttatacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagtatagaaagagagaatatggtggtgaaaaatgaggccggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcagaaagcagttcgagtgacgaagagtcctgttgcaagaaactcagagaggagcacataaaagcgaaagtttcaattgtttctatgaagactgatgcatctgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39163" stop="37859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38863" g_stop="38708" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38159" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="582" r_length="426" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E283137" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38863" e_stop="38708"/>
          <exon e_start="38584" e_stop="38159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACC</genome_strand>
        <mrna_strand>TTTGTTTCTTTAACTTATACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGTATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCCGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTTCAATTGTTTCTATGAAGACTGATGCATCTGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205149" ref_strand="+" ref_description="SGN-E205149 [cLEC-16-O12]">
      <seq>ttgaggagataaaaagaaagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcagaaagcagttcgagtgacgaagagtcctgttgcaagaaactcagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39185" stop="37917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38885" g_stop="38708" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38217" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="546" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E205149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38885" e_stop="38708"/>
          <exon e_start="38584" e_stop="38217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGA</genome_strand>
        <mrna_strand>TTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244527" ref_strand="+" ref_description="SGN-E244527 [cLED-38-M21]">
      <seq>aagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcaaaaagcagttcgagtgacgaagagtcctgttgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39168" stop="37928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38868" g_stop="38708" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38228" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="518" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E244527" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38868" e_stop="38708"/>
          <exon e_start="38584" e_stop="38228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAG</genome_strand>
        <mrna_strand>AAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAAAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212535" ref_strand="+" ref_description="SGN-E212535 [cLEC-74-K12]">
      <seq>agattttgaggagataaaaagaaagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaatcctgttaacaacaacaacaataataataacaatatggatgttgttcatggacgttcatcagaaagcagttcgagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39190" stop="37947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38890" g_stop="38708" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38247" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="521" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E212535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38890" e_stop="38708"/>
          <exon e_start="38584" e_stop="38247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGA</genome_strand>
        <mrna_strand>AGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289364" ref_strand="+" ref_description="SGN-E289364 [cLES-18-P4]">
      <seq>agattttgaggagataaaaagaaagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaggggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaagtatctctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39190" stop="38024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38890" g_stop="38708" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38324" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="444" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E289364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38890" e_stop="38708"/>
          <exon e_start="38584" e_stop="38324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAAT</genome_strand>
        <mrna_strand>AGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242822" ref_strand="+" ref_description="SGN-E242822 [cLED-31-B12]">
      <seq>agattttgaggagataaaaagaaagtgtttgtttctttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaattacaatggaatttaccagtttggttgatacttcattggatttgagctttaggcctcgtcaaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagcatagaaagagagaatatggtggtgaaaaatgaggcaagggatttgttagaggaactaaacagagtgagtagtgaaaacaagaagttaacagagatgcttactgtaatttgtgaaaattacaatgctttaagaaaccaaatgatggagtatatgagcacacaaaatggtgtagctgaagatactagtgcagggtcaaggaaaagaaaagctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39190" stop="38034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38890" g_stop="38708" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38334" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="434" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E242822" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38890" e_stop="38708"/>
          <exon e_start="38584" e_stop="38334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAG</genome_strand>
        <mrna_strand>AGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAAGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAATTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358270" ref_strand="+" ref_description="SGN-E358270 [cLHT-28-M18]">
      <seq>tcaatttaatatttatccccttttccttgagtttcttcccaccttcctacaacttggtcagctggtcttctaaagccctttggtatatttatatacatcttttattatcttcatttctaataccatcatcagattttgaggagaaaaaaaaaagtgtttgtttcttaacttaaacacacctgaagaaagactacaactttgttgattcttggaattttcatacatcaaagaagatattaatatctatggaatttaccagtttggttgatacgtcattggatttgagctttaggcctcgtcgaaaagtcctgaaacaagaagtgcagagtgatttcactggattgagtattgaaagagagaatatggtggtgaaaaatgaagcaggggatttgtttgaggaactaaacagagtgagtagtgaaaacaagaagtttacagagatgcttactgtagtttgtgaaaattacaatgctttaagaaaccaaatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39319" stop="38104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39019" g_stop="38708" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38584" g_stop="38404" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="492" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E358270" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39019" e_stop="38708"/>
          <exon e_start="38584" e_stop="38404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTAATATTTATCCCCCTTTTCCTTGATTTTCTTCCCACCTTCCTACAACTTGGTCAGCTGGTCTTCTAAAGCCCTTTGGTAT-T-TATATACACCTTTTATTATCTTTATTTCTAATACCATCATCAGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTGGTAAGATTTTTGGACTATGCCCAAATGTATAATTATATTTTTACTATTGATGTTTTTCGGTGGTAACAGGGGATATATGTTATTAGTATTGATATGTTTTTTTTTGTTGTTGTTGGGTTTCAGAAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGG</genome_strand>
        <mrna_strand>TCAATTTAATATTTATC-CCCTTTTCCTTGAGTTTCTTCCCACCTTCCTACAACTTGGTCAGCTGGTCTTCTAAAGCCCTTTGGTATATTTATATACATCTTTTATTATCTTCATTTCTAATACCATCATCAGATTTTGAGGAGA-AAAAAAAAAGTGTTTGTTTC-TTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATATCTATGGAATTTACCAGTTTGGTTGATACGTCATTGGATTTGAGCTTTAGGCCTCGTCGAAAAGTCCTG...........................................................................................................................AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGTATTGAAAGAGAGAATATGGTGGTGAAAAATGAAGCAGGGGATTTGTTTGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTTACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273960" ref_strand="+" ref_description="SGN-E273960 [cLEN-7-H18]">
      <seq>ttaatgtgtttaatgggggagttttatggttacgcaattttgacgtgcttaagttccatatatctgaatattttgtgcatactttttgacttacgagacattcaaatatctagctcaagaaacgagtacacttcaaactgtatttttaaaaaagaataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45439" stop="44679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45139" g_stop="44979" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E273960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45139" e_stop="44979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTGTTTAATGGGGGAGTTTTATGGTTACGCAATTTTGACGTGCTTAAGTTCCATATATCTGAATATTTTGTGCATACTTTTTGACTTACGAGACATTCAAATATCTAGCTCAAGAAACGAGTACACTTCAAACTGTATTTTTAAAAAAGAATAAAC</genome_strand>
        <mrna_strand>TTAATGTGTTTAATGGGGGAGTTTTATGGTTACGCAATTTTGACGTGCTTAAGTTCCATATATCTGAATATTTTGTGCATACTTTTTGACTTACGAGACATTCAAATATCTAGCTCAAGAAACGAGTACACTTCAAACTGTATTTTTAAAAAAGAATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689319" ref_strand="+" ref_description="SGN-E689319 [t3_tus_84_B16]">
      <seq>ccaaaacacaaattgctttctctttcatctcataagcgtgactttcactggaattttccaactctactcagcacggctctgatatttttggtatttgtcttactcactcaatctgaaactcttttttgtcgttttctcatgcatccctcgaggaattacaccggcgaagcgccgtcggagttgcggtggcagagggggaaaatgttgccggtgaagagggaggtagaccttgaaaacttttccgatgaagaacgctgcaaactcgacaagcgattcaagctttcctcttctctgcaacagcaactgggtgaaggagcttgtaattttactgtttcatcatcgttcatgtcggtagatgaacccagtccattaggtttgcggctaagaaagaccccatcactgttggatatgttccaaacgatgcttgggggcacctccatggtggaaagtcttggaaagaaggagcagaaaagaagcactgcaatgatagaaaagctcaaggcctcgaattttcctggttcagttctgagaattggaacctgggagtataagtcgagatatgaaggagatttggttgcaaaatgttactttgccaagcataaacttgtatgggaagtccttgatggtggtctcaagaataagatagagatccagtggtctgatattatagggttgaaggcaaattacccagatgatgcaccaggaaccttggatatagtgctggcaaggcaacctcttttctttagggagacagatccccaacccagaaagcacacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76295" stop="78433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76595" g_stop="76891" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76892" i_stop="77427" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.036" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77428" g_stop="77676" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="546" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77763" g_stop="77936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="720" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77937" i_stop="78073" i_length="137">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78074" g_stop="78133" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="780" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E689319" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76595" e_stop="76891"/>
          <exon e_start="77428" e_stop="77676"/>
          <exon e_start="77763" e_stop="77936"/>
          <exon e_start="78074" e_stop="78133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAAGTAGGTTTTTCTCTCTCTTTGTTGTTCTAATTTAAAAGCGATGTTTCTCTATTTGATTTGTGCAATTTTTCTTCTTCCAACACTTTTGTCTGTGTGCATCTTGTTATCTATTACCTTATGCTCTGAATTTGACTACACATAGAGTTTATGGTGTTAGTTTGACTTACTATTGAATTACATCAAACATTTAGGGACTTACCAAATTGAGAAGTGCTTGGTAATAAATGAAGTAAAGGAATATAAATAACCATTTTAGAAATGTTTGTAGGAGAATTATCAATTACCAAATTGGGAATAAGAACTTGGCTTATCAGTATTGATGCCTTGATATTGATTAAGGAGATTCCAGTGAATTTTACGTCTATTGTTATCTTCTGAGGTATTTCTTTCTAACTGTTCTGGAAAACGATTATCGGAAAAACCTCTCTACAGCGCGAAGGTAGGGGTAAGGTCTGCGTGTACACCCTATCGTAGGACTATACCGAGTATGCAATTGTATTATCTTCTCTGAGATCTAAATCAAGGATATTTTGCAGCAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAGGTATACACAGTTCTTTTTTTGATGATTTGTAAATAATGTTCAGTCTAAATGTTCCACAAGTGAATGTAATTCTATTGTCTCTACAGTATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTGGTAAGGGGTAAAACAATTTTGTTTTTGCTATTGTCTTTGTGAAGTTATTTCCTTAACTGCATTAGCAGAATAGGCTCCAGTGTTGCTTTCCTTATCAACCTTAGTTGATGAGGGTGCTATGTATCCTTGTATTGCAGCTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTT</genome_strand>
        <mrna_strand>CCAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG......................................................................................TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG.........................................................................................................................................CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCCCAACCCAGAAAGCACACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332524" ref_strand="+" ref_description="SGN-E332524 [cTOD-18-C1]">
      <seq>caaaacacaaattgctttctctttcatctcataagcgtgactttcactggaattttccaactctactcagcacggctctgatatttttggtatttgtcttactcactcaatctgaaactcttttttgtcgttttctcatgcatccctcgaggaattacaccggcgaagcgccgtcggagttgcggtggcagagggggaaaatgttgccggtgaagagggaggtagaccttgaaaacttttccgatgaagaacgctgcaaactcgacaagcgattcaagctttcctcttctctgcaacagcaactgggtgaaggagcttgtaattttactgtttcatcatcgttcatgtcggtagatgaacccagtccattaggtttgcggctaagaaagaccccatcactgttggatatgttccaaacgatgcttgggggcacctccatggtggaaagtcttggaaagaaggagcagaaaagaagcactgcaatgatagaaaagctcaaggcctcgaattttcctggttcagttctgagaattggaacctgngagtataagtcgagatatgaaggagatttggttngcaaatgttacttttgcaagcataaacttgtatgggaagtccttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76296" stop="78141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76596" g_stop="76891" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76892" i_stop="77427" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.036" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77428" g_stop="77676" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="545" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77763" g_stop="77841" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="624" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E332524" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76596" e_stop="76891"/>
          <exon e_start="77428" e_stop="77676"/>
          <exon e_start="77763" e_stop="77841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAAGTAGGTTTTTCTCTCTCTTTGTTGTTCTAATTTAAAAGCGATGTTTCTCTATTTGATTTGTGCAATTTTTCTTCTTCCAACACTTTTGTCTGTGTGCATCTTGTTATCTATTACCTTATGCTCTGAATTTGACTACACATAGAGTTTATGGTGTTAGTTTGACTTACTATTGAATTACATCAAACATTTAGGGACTTACCAAATTGAGAAGTGCTTGGTAATAAATGAAGTAAAGGAATATAAATAACCATTTTAGAAATGTTTGTAGGAGAATTATCAATTACCAAATTGGGAATAAGAACTTGGCTTATCAGTATTGATGCCTTGATATTGATTAAGGAGATTCCAGTGAATTTTACGTCTATTGTTATCTTCTGAGGTATTTCTTTCTAACTGTTCTGGAAAACGATTATCGGAAAAACCTCTCTACAGCGCGAAGGTAGGGGTAAGGTCTGCGTGTACACCCTATCGTAGGACTATACCGAGTATGCAATTGTATTATCTTCTCTGAGATCTAAATCAAGGATATTTTGCAGCAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAGGTATACACAGTTCTTTTTTTGATGATTTGTAAATAATGTTCAGTCTAAATGTTCCACAAGTGAATGTAATTCTATTGTCTCTACAGTATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATG</genome_strand>
        <mrna_strand>CAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGNGAG......................................................................................TATAAGTCGAGATATGAAGGAGATTTGGTTNGCAAATGTTACTTTTGCAAGCATAAACTTGTATGGGAAGTCCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334941" ref_strand="+" ref_description="SGN-E334941 [cTOE-9-A16]">
      <seq>ttactcactcaatctgaaactcttttttgtcgttttctcatgcatccctcgaggaattacaccggcgaagcgccgtcggagttgcggtggcagagggggaaaatgttgccggtgaagagggaggtagaccttgaaaacttttccgatgaagaacgctgcaaactcgacaagcgattcaagctttcctcttctctgcaacaactgggtgaaggagcttgtaattttactgtttcatcatcgttcatgtcggtagatgaacccagtccattaggtttgcggctaagaaagaccccatcactgttggatatgttccaaacgatgcttgggggcacctccatggtggaaagtcttggaaagaaggagcagaaaagaagcactgcaatgatagaaaagctcaaggcctcgaattttcctggttcagttctgagaattggaacctgggagtataagtcgagatatgaaggagatttggttgcaaaatgttactttgccaagcataaacttgtatgggaagtccttgatggtggtctcaagaataagatagagatccagtggtctgatattatagggttgaaggcaaattacccagatgatgcaccaggaaccttggatatagtgctggcaaggcaacctcttttctttanggagacagatccacaacccagaaagcacacactttggcaagctacttcagattttactgacggacaggctagtatacacaggcgacattacttagagtgtccgcatggattgttgggaaagcatattgaaaagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76394" stop="80220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76694" g_stop="76891" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76892" i_stop="77430" i_length="539">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77431" g_stop="77676" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="444" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77763" g_stop="77936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="618" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77937" i_stop="78073" i_length="137">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78074" g_stop="78180" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="725" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78181" i_stop="79862" i_length="1682">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79863" g_stop="79920" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="783" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E334941" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76694" e_stop="76891"/>
          <exon e_start="77431" e_stop="77676"/>
          <exon e_start="77763" e_stop="77936"/>
          <exon e_start="78074" e_stop="78180"/>
          <exon e_start="79863" e_stop="79920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAAGTAGGTTTTTCTCTCTCTTTGTTGTTCTAATTTAAAAGCGATGTTTCTCTATTTGATTTGTGCAATTTTTCTTCTTCCAACACTTTTGTCTGTGTGCATCTTGTTATCTATTACCTTATGCTCTGAATTTGACTACACATAGAGTTTATGGTGTTAGTTTGACTTACTATTGAATTACATCAAACATTTAGGGACTTACCAAATTGAGAAGTGCTTGGTAATAAATGAAGTAAAGGAATATAAATAACCATTTTAGAAATGTTTGTAGGAGAATTATCAATTACCAAATTGGGAATAAGAACTTGGCTTATCAGTATTGATGCCTTGATATTGATTAAGGAGATTCCAGTGAATTTTACGTCTATTGTTATCTTCTGAGGTATTTCTTTCTAACTGTTCTGGAAAACGATTATCGGAAAAACCTCTCTACAGCGCGAAGGTAGGGGTAAGGTCTGCGTGTACACCCTATCGTAGGACTATACCGAGTATGCAATTGTATTATCTTCTCTGAGATCTAAATCAAGGATATTTTGCAGCAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAGGTATACACAGTTCTTTTTTTGATGATTTGTAAATAATGTTCAGTCTAAATGTTCCACAAGTGAATGTAATTCTATTGTCTCTACAGTATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTGGTAAGGGGTAAAACAATTTTGTTTTTGCTATTGTCTTTGTGAAGTTATTTCCTTAACTGCATTAGCAGAATAGGCTCCAGTGTTGCTTTCCTTATCAACCTTAGTTGATGAGGGTGCTATGTATCCTTGTATTGCAGCTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAGGTCTTACTATTATCCCTGCAGTTCTTTTCTTCCTCAAGTAATAATTACGCCATTGTTACTTGTTAGTCGTTAGCCAATTTTATCTTATATTCTTGACATCTCCTCGGACATCTACTCTAGCCTTTTAACCCTTCCTTTTTCCCCCACTTTGGTGAGTACTTTAAATTACTTGTTTGATCAACGTAGTTAGTGAATTAAAATAATGAGAGAAAACTAAATCCAGAAAGAGGTTTGCCCAGCATGACTCAACTCTATTGACAGATGGATTTATATGATAAGTAGTGGTCTTATTAGATTTGGAATTTCATCTAGCAAGCAGTAATTGTTGATATGGAGAAGGCCAAGAAACACCATTTTCTTAATTTGAACTTTTTAAAATGTCTTGCGGTGGGGGTTTGGGAAGGATGAGAAGACTGTAGAATACATTATTCATGCAGAAACTCTCTCTTTCCTATCTAGTTTATTTTACGTTAGAAGAGGCGAGACAGAAACTTTAGATCGAGGCTTAGTGATTTTTGACGAGAAGAGAGGCAATACTAGAAAGATAAGGTAGAGTGGGGCACTCATTTAGTGCCTAATGGTTAATGCTTGTTGGGATGGCAACATGGTGGGGCAGGTTAAGGTTATGCGGGATGTATGGGTTTAAACTTATGGGTAGTGGGTGGGTTCAAGCGTGTTTTTTAAAACTTCAAAGCCGTTGAGGGTTAGCACTTTGGACCAATTACAAATTAGCTAAATTTCTGCAACTTCAATCAATCACTTATTGCAGATGTCTGGACTTGCAAAATGTTAGCATAAAAATGATGATTTTCAAACACTTTTTATGACTCTGCCAAGGAACAGAGTAATTCATTTTTATATGTTAATTGAAAACATGAAGAAGGTAGCAATTTTTAGGAGGCACTGAGGCAGTACTGGTCAGGGAGGTGGGGGCAAAACTGGAGAACAGAAGTGAGAAAATATAAATGAAATGAATGCATTATTCTTCATCGAATTTATTCATCCAAGTTTTGAATGGAAGAGCTTGACATTTCTTATGATTTTTTTTGCTTATCGTCGGGTTTATTATCTTAGTTCCAAACCAATCTTTAAGATGTAATAACAGTTCATTTATCACATTCTTGTGTGATAAACAAATCATGGGACAAATGTTTTGAACTATCCCATGCTTTGAATTAAGTAGCTATGTGGCAGGGCAGATTTATGTGGGTTTGGGGGGGGGGGTATGGGGAGGGACAGGTTTGAAATAGAAGGTTTTCTGTGCGGAGCGGTGCGCATGGGTTAAAGTCTTTCGGGTGAATGCTGAACCTGCGTGGCAAACTCCCTGCCTTTCCCCGTTGCTATTCTACTTAATGATTCTCCGTGTGGCCTACTGCAGTTCTGAAAGAGCATTTTAGTGTTGCAACCGAATGGAATATTTCAGTAGATGCAGCTTTGAATCTAAAATGCCCAACTAAATTTCCCAATTTCAGTTTAATCTGTTGTAAAAAGCTAATTTTTGAAGCATGTTGCACCTATAGTAGCTTTTATATTGTATCATAGTGATTGCAAGTATGTTGGGTTTTTAAGTTCTGCTGGTTGTAGGGTGTGTTTGGTCTGTTTACAATTTCTAGGATTTCCTTGCTTGTCTTCATGTGGTTCAGTTTTGATGTAAAAACTCTTCAAATTTTCTTTGGTTGTAGGCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTG</genome_strand>
        <mrna_strand>TTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG......................................................................................TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG.........................................................................................................................................CTGGCAAGGCAACCTCTTTTCTTTANGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333222" ref_strand="+" ref_description="SGN-E333222 [cTOD-20-O2]">
      <seq>ggaggtagaccttgaaaacttttccgatgaagaacgctgcaaactcgacaagcgattcaagctttcctcttctctgcaacaactgggtgaaggagcttgtaattttactgtttcatcatcgttcatgtcggtagatgaacccagtccattaggtttgcggctaagaaagaccccatcactgttggatatgttccaaacgatgcttgggggcacctccatggtggaaagtcttggaaagaaggagcagaaaagaagcactgcaatgatagaaaagctcaaggcctcgaattttcctggttcagttctgagaattggaacctgggagtataagtcgagatatgaaggagatttggttgcaaaatgttactttgccaagcataaacttgtatgggaagtccttgatggtggtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76513" stop="78150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76813" g_stop="76887" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76888" i_stop="77427" i_length="540">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.036" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77428" g_stop="77676" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="325" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77763" g_stop="77850" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="413" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E333222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76813" e_stop="76887"/>
          <exon e_start="77428" e_stop="77676"/>
          <exon e_start="77763" e_stop="77850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCT-GCAAGTAGGTTTTTCTCTCTCTTTGTTGTTCTAATTTAAAAGCGATGTTTCTCTATTTGATTTGTGCAATTTTTCTTCTTCCAACACTTTTGTCTGTGTGCATCTTGTTATCTATTACCTTATGCTCTGAATTTGACTACACATAGAGTTTATGGTGTTAGTTTGACTTACTATTGAATTACATCAAACATTTAGGGACTTACCAAATTGAGAAGTGCTTGGTAATAAATGAAGTAAAGGAATATAAATAACCATTTTAGAAATGTTTGTAGGAGAATTATCAATTACCAAATTGGGAATAAGAACTTGGCTTATCAGTATTGATGCCTTGATATTGATTAAGGAGATTCCAGTGAATTTTACGTCTATTGTTATCTTCTGAGGTATTTCTTTCTAACTGTTCTGGAAAACGATTATCGGAAAAACCTCTCTACAGCGCGAAGGTAGGGGTAAGGTCTGCGTGTACACCCTATCGTAGGACTATACCGAGTATGCAATTGTATTATCTTCTCTGAGATCTAAATCAAGGATATTTTGCAGCAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAGGTATACACAGTTCTTTTTTTGATGATTTGTAAATAATGTTCAGTCTAAATGTTCCACAAGTGAATGTAATTCTATTGTCTCTACAGTATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCA</genome_strand>
        <mrna_strand>GGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG......................................................................................TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262467" ref_strand="+" ref_description="SGN-E262467 [cLEG-56-P19]">
      <seq>agatttggttgcaaaatgttactttgccaagcataaacttgtatgggaagtccttgatggtggtctcaagaataagatagagatccagtggtctgatattatagggttgaaggcaaattacccagatgatgcaccaggaaccttggatatagtgctggcaaggcaacctcttttctttagggagacagatccacaacccagaaagcacacactttggcaagctacttcagattttactgacggacaggctagtatacacaggcgacattacttagagtgtccgcatggattgttgggaaagcatattgaaaagcttgtgcaatgtgatcctcgtctcaactttctgagtcaacaagcagagatgactctagattctccttattttgaatcccagatgtcaggttttgaagacacacatgaaagggaccgtgaatttgatctgaataatgaagggagtccgaattttattggctatacttcaccttctggagctcagtgttcctccaaaagtaagcaagatcctagacctttggaatgtattcaccaagaaaagccatccccaagatcaggtaattatgtattttatctgagaagtgcatttaagttttcttgaattgagttgtatggtgagtatgtctttgaagatgtcgatgatcatcccttatcccccacctttttgacaaaaagacaaattgatcgtcattttcttttcagagagtggagaggaagttcgctacccattcccttgattttattgtagtcatgtcttggtgttacagttgtgagtttcttgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77483" stop="80700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77783" g_stop="77936" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77937" i_stop="78073" i_length="137">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78074" g_stop="78180" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="261" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78181" i_stop="79862" i_length="1682">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79863" g_stop="80400" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="799" r_length="538" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E262467" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77783" e_stop="77936"/>
          <exon e_start="78074" e_stop="78180"/>
          <exon e_start="79863" e_stop="80400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTGGTAAGGGGTAAAACAATTTTGTTTTTGCTATTGTCTTTGTGAAGTTATTTCCTTAACTGCATTAGCAGAATAGGCTCCAGTGTTGCTTTCCTTATCAACCTTAGTTGATGAGGGTGCTATGTATCCTTGTATTGCAGCTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAGGTCTTACTATTATCCCTGCAGTTCTTTTCTTCCTCAAGTAATAATTACGCCATTGTTACTTGTTAGTCGTTAGCCAATTTTATCTTATATTCTTGACATCTCCTCGGACATCTACTCTAGCCTTTTAACCCTTCCTTTTTCCCCCACTTTGGTGAGTACTTTAAATTACTTGTTTGATCAACGTAGTTAGTGAATTAAAATAATGAGAGAAAACTAAATCCAGAAAGAGGTTTGCCCAGCATGACTCAACTCTATTGACAGATGGATTTATATGATAAGTAGTGGTCTTATTAGATTTGGAATTTCATCTAGCAAGCAGTAATTGTTGATATGGAGAAGGCCAAGAAACACCATTTTCTTAATTTGAACTTTTTAAAATGTCTTGCGGTGGGGGTTTGGGAAGGATGAGAAGACTGTAGAATACATTATTCATGCAGAAACTCTCTCTTTCCTATCTAGTTTATTTTACGTTAGAAGAGGCGAGACAGAAACTTTAGATCGAGGCTTAGTGATTTTTGACGAGAAGAGAGGCAATACTAGAAAGATAAGGTAGAGTGGGGCACTCATTTAGTGCCTAATGGTTAATGCTTGTTGGGATGGCAACATGGTGGGGCAGGTTAAGGTTATGCGGGATGTATGGGTTTAAACTTATGGGTAGTGGGTGGGTTCAAGCGTGTTTTTTAAAACTTCAAAGCCGTTGAGGGTTAGCACTTTGGACCAATTACAAATTAGCTAAATTTCTGCAACTTCAATCAATCACTTATTGCAGATGTCTGGACTTGCAAAATGTTAGCATAAAAATGATGATTTTCAAACACTTTTTATGACTCTGCCAAGGAACAGAGTAATTCATTTTTATATGTTAATTGAAAACATGAAGAAGGTAGCAATTTTTAGGAGGCACTGAGGCAGTACTGGTCAGGGAGGTGGGGGCAAAACTGGAGAACAGAAGTGAGAAAATATAAATGAAATGAATGCATTATTCTTCATCGAATTTATTCATCCAAGTTTTGAATGGAAGAGCTTGACATTTCTTATGATTTTTTTTGCTTATCGTCGGGTTTATTATCTTAGTTCCAAACCAATCTTTAAGATGTAATAACAGTTCATTTATCACATTCTTGTGTGATAAACAAATCATGGGACAAATGTTTTGAACTATCCCATGCTTTGAATTAAGTAGCTATGTGGCAGGGCAGATTTATGTGGGTTTGGGGGGGGGGGTATGGGGAGGGACAGGTTTGAAATAGAAGGTTTTCTGTGCGGAGCGGTGCGCATGGGTTAAAGTCTTTCGGGTGAATGCTGAACCTGCGTGGCAAACTCCCTGCCTTTCCCCGTTGCTATTCTACTTAATGATTCTCCGTGTGGCCTACTGCAGTTCTGAAAGAGCATTTTAGTGTTGCAACCGAATGGAATATTTCAGTAGATGCAGCTTTGAATCTAAAATGCCCAACTAAATTTCCCAATTTCAGTTTAATCTGTTGTAAAAAGCTAATTTTTGAAGCATGTTGCACCTATAGTAGCTTTTATATTGTATCATAGTGATTGCAAGTATGTTGGGTTTTTAAGTTCTGCTGGTTGTAGGGTGTGTTTGGTCTGTTTACAATTTCTAGGATTTCCTTGCTTGTCTTCATGTGGTTCAGTTTTGATGTAAAAACTCTTCAAATTTTCTTTGGTTGTAGGCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATG</genome_strand>
        <mrna_strand>AGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG.........................................................................................................................................CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGGCTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGACAAAAAGACAAATTGATCGTCATTTTCTTTTCAGAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGAGTTTCTTGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302007" ref_strand="+" ref_description="SGN-E302007 [cLEX-3-E8]">
      <seq>cagagatgactctagattctccttattttgaatcccagatgtcaggttttgaagacacacatgaaagggaccgtgaatttgatctgaataatgaagggagtccgaattttattgactatacttcaccttctggagctcagtgttcctccaaaagtaagcaagatcctagacctttggaatgtattcaccaagaaaagccatccccaagatcaggtaattatgtattttatctgagaagtgcatttaagttttcttgaattgagttgtatggtgagtatgtctttgaagatgtcgatgatcatcccttatcccccacctttttgaaaaaaagacaaattgatcgtcattttcttttcaaagagtggagaggaagttcgctacccattcccttgattttattgtagtcatgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79658" stop="80671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79958" g_stop="80371" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E302007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79958" e_stop="80371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTG</genome_strand>
        <mrna_strand>CAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253657" ref_strand="+" ref_description="SGN-E253657 [cLEG-32-M22]">
      <seq>aggttttgaagacacacatgaaagggaccgtgaatttgatctgaataatgaagggagtccgaattttattgactatacttcaccttctggagctcagtgttcctccaaaagtaagcaagatcctagacctttggaatgtattcaccaagaaaagccatccccaagatcaggtaattatgtattttatctgagaagtgcatttaagttttcttgaattgagttgtatggtgagtatgtctttgaagatgtcgatgatcatcccttatcccccacctttttgaaaaaaagacaaattgatcgtcattttcttttcaaagagtggagaggaagttcgctacccattcccttgattttattgtagtcatgtcttggtgttacagttgtgtgtttcttgaacatgatccacattgagggggttgtctctgttcaaaaagaggaatatgaccgtaatgcagaattgggttatggacatgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79701" stop="80778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80001" g_stop="80478" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E253657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80001" e_stop="80478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</genome_strand>
        <mrna_strand>AGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226176" ref_strand="+" ref_description="SGN-E226176 [cLEL-31-O10](-)">
      <seq>aggatcctgcaacagttcaagcgagtgagaactgtggtgatgtgtcggataaaagaagagttaatgaaataaatttcattcccaccgcaccgcttggaagaaaagatgaagaagattcttctatgccagaggatgaatcagctgatctctctagttgcaagccgacttcaacaatgtcaaggaaggactctgttggtgatctgttgctgaatcttcctaggatagcatcactgccccactttttgttcttatgcgatgattctacaggtaaccaggctagatagtcttagctcaagtctacatcaggtaaccatcgcaaaggatggctgtagttctcttgtatatattgaaaagctatgttagcaacagtactgtccagtttaggacttgaaactttgatgcatcattatagaactgttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80651" stop="81671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80951" g_stop="81370" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E226176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80951" e_stop="81370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCCTGCAACAGTTCAAGCGAGTGAGAACTGTGGTGATGTGTCGGATGAAAGAAGAGTTAATGAAATAAATTTCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTC</genome_strand>
        <mrna_strand>AGGATCCTGCAACAGTTCAAGCGAGTGAGAACTGTGGTGATGTGTCGGATAAAAGAAGAGTTAATGAAATAAATTTCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226080" ref_strand="+" ref_description="SGN-E226080 [cLEL-31-O10](-)">
      <seq>tcattcccaccgcaccgcttggaagaaaagatgaagaagattcttctatgccagaggatgaatcagctgatctctctagttgcaagccgacttcaacaatgtcaaggaaggactctgttggtgatctgttgctgaatcttcctaggatagcatcactgccccactttttgttcttatgcgatgattctacaggtaaccaggctagatagtcttagctcaagtctacatcaggtaaccatcgcaaaggatggctgtagttctcttgtatatattgaaaagctatgttagcaacagtactgtccagtttaggacttgaaactttgatgcatcattatagaactgttcacggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80726" stop="81685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81026" g_stop="81374" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E226080" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81026" e_stop="81374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTCATGG</genome_strand>
        <mrna_strand>TCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTCACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698112" ref_strand="+" ref_description="SGN-E698112 [FA05BB09]">
      <seq>gaataatcatcagtagctaaaatgatcagcttcttcagagctttctttcttataataattatcagctttctcattttcgtaggagctcaagcaagaactttactaggaaattaccatgatgatgagatgctgatagagttgaagttggaaagtggtaattatggaaggacaccatataagacacctccaccaccaacatcatcttcaccaacacatcaagaaatagttaatggaagacatgatagtgtattaccacctccttctcccaagactgatccaattattggtcaactcacaacaattactactactcctcatcatgacgacaccgtcgcggcgccgcctgttggtgggaggcacgattatgtagcctcaccaccaccaccaaagccacaagatgaacaaaggcagatcattatcacatcctcttcttctactttgcctcttcaagcttcctattaagctagcatcggaactttataatataatatatgttcactactaagtgtagtattttttattttatgttattaaagtagctacatgtataatctggttttagttcacttgatgagttaattaactcaagaataatatgtgtaatagacgtattgtaatggagtattaacaacgtatgtacgtagtaaatgaatttgagggagtgatatgtggtttttaacttattaatcaataacataatgcagtattgttatncaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86613" stop="84783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86313" g_stop="86208" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86207" i_stop="85700" i_length="508">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="85077" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="729" r_length="623" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E698112" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86313" e_stop="86208"/>
          <exon e_start="85699" e_stop="85077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAGGTACCTACTACTAATTTAATTTAATTTAATTATTCTTTAGTTACCTACTCTATTATATTTACTTAAACATTAGTATTCATTAATTATTCTTTTTAGTTAATCCACTTGAAAATTATTGTTATGGTGGGCTGCATGGATGAGAAAGTAATTAATATAAATTCATAACGTTGTAATTAGAAGATAGTATGCCACTTTTTTTTTTATGAAACACTTCTTTTCTCATACTTATATATGATTTGAGCTAAAATTAATCTACATCTACTTGAGGAAATTAATCAACCTAATCATATACTATCTTTCAGTTTAGTGCACCAAGCATCCATTATTCGCACGTAATCTCATTTCAAAGAGTGTGACATAGACAACCTGTCTTAATATAGCATTAGAGATTTGCTTCATTTTATCTTATAGGTCACGCAGAGACAACCTTAGCGTTGCGTTTTCCCTTTCTATTACTCTAATTAACTTTGAGAAGTTAATAAATAATGTTGCTTACTTGGTTGATCAGGAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTATCAAACCAGAATTTATA</genome_strand>
        <mrna_strand>GAATAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTATNCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716868" ref_strand="+" ref_description="SGN-E716868 [FB18BA12]">
      <seq>ccattaagaaaaatcatcagtagctaaaatgatcagcttcttcagagctttctttcttataataattatcagctttctcattttcgtaggagctcaagcaagaactttactaggaaattaccatgatgatgagatgctgatagagttgaagttggaaagtggtaattatggaaggacaccatataagacacctccaccaccaacatcatcttcaccaacacatcaagaaatagttaatggaagacatgatagtgtattaccacctccttctcccaagactgatccaattattggtcaactcacaacaattactactactcctcatcatgacgacaccgtcgcggcgccgcctgttggtgggaggcacgattatgtagcctcaccaccaccaccaaagccacaagatgaacaaaggcagatcattatcacatcctcttcttctactttgcctcttcaagcttcctattaagctagcatcggaactttataatataatatatgttcactactaagtgtagtattttttattttatgttattaaagtagctacatgtataatctggttttagttcacttgatgagttaattaactcaagaataatatgtgtaatagacgtattgtaatggagtattaacaacgtatgtacgtagtaaatgaatttgagggagtgatatgtggtttttaacttattaatcaataacataatgcagtattgttatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86620" stop="84783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86320" g_stop="86208" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86207" i_stop="85700" i_length="508">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="85079" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="734" r_length="621" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E716868" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86320" e_stop="86208"/>
          <exon e_start="85699" e_stop="85079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAGAAAAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAGGTACCTACTACTAATTTAATTTAATTTAATTATTCTTTAGTTACCTACTCTATTATATTTACTTAAACATTAGTATTCATTAATTATTCTTTTTAGTTAATCCACTTGAAAATTATTGTTATGGTGGGCTGCATGGATGAGAAAGTAATTAATATAAATTCATAACGTTGTAATTAGAAGATAGTATGCCACTTTTTTTTTTATGAAACACTTCTTTTCTCATACTTATATATGATTTGAGCTAAAATTAATCTACATCTACTTGAGGAAATTAATCAACCTAATCATATACTATCTTTCAGTTTAGTGCACCAAGCATCCATTATTCGCACGTAATCTCATTTCAAAGAGTGTGACATAGACAACCTGTCTTAATATAGCATTAGAGATTTGCTTCATTTTATCTTATAGGTCACGCAGAGACAACCTTAGCGTTGCGTTTTCCCTTTCTATTACTCTAATTAACTTTGAGAAGTTAATAAATAATGTTGCTTACTTGGTTGATCAGGAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTATCAAACCAGAATTTA</genome_strand>
        <mrna_strand>CCATTAAGAAAAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTATCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716300" ref_strand="+" ref_description="SGN-E716300 [FB16CF11]">
      <seq>gctaaaatgatcagcttcttcagagctttctttcttataataattatcagctttctcattttcgtaggagctcaagcaagaactttactaggaaattaccatgatgatgagatgctgatagagttgaagttggaaagtggtaattatggaaggacaccatataagacacctccaccaccaacatcatcttcaccaacacatcaagaaatagttaatggaagacatgatagtgtattaccacctccttctcccaagactgatccaattattggtcaactcacaacaattactactactcctcatcatgacgacaccgtcgcggcgccgcctgttggtgggaggcacgattatgtagcctcaccaccaccaccaaagccacaagatgaacaaaggcagatcattatcacatcctcttcttctactttgcctcttcaagcttcctattaagctagcatcggaactttataatataatatatgttcactactaagtgtagtattttttattttatgttattaaagtagctacatgtataatctggttttagttcacttgatgagttaattaactcaagaataatatgtgtaatagacgtattgtaatggagtattaacaacgtatgtacgtagtaaatgaatttgagggagtgatatgtggtttttaacttattaatcaataacataatgcagtattgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86598" stop="84793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86298" g_stop="86208" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86207" i_stop="85700" i_length="508">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="85093" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="698" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E716300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86298" e_stop="86208"/>
          <exon e_start="85699" e_stop="85093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAGGTACCTACTACTAATTTAATTTAATTTAATTATTCTTTAGTTACCTACTCTATTATATTTACTTAAACATTAGTATTCATTAATTATTCTTTTTAGTTAATCCACTTGAAAATTATTGTTATGGTGGGCTGCATGGATGAGAAAGTAATTAATATAAATTCATAACGTTGTAATTAGAAGATAGTATGCCACTTTTTTTTTTATGAAACACTTCTTTTCTCATACTTATATATGATTTGAGCTAAAATTAATCTACATCTACTTGAGGAAATTAATCAACCTAATCATATACTATCTTTCAGTTTAGTGCACCAAGCATCCATTATTCGCACGTAATCTCATTTCAAAGAGTGTGACATAGACAACCTGTCTTAATATAGCATTAGAGATTTGCTTCATTTTATCTTATAGGTCACGCAGAGACAACCTTAGCGTTGCGTTTTCCCTTTCTATTACTCTAATTAACTTTGAGAAGTTAATAAATAATGTTGCTTACTTGGTTGATCAGGAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTAT</genome_strand>
        <mrna_strand>GCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239266" ref_strand="+" ref_description="SGN-E239266 [cLEL-9-F1](-)">
      <seq>accaccaaagccccaagatgaacaaaggcagatcattatcacatcctcttcttttactttgcctcttcaagcttcctattaagctagcatcggaactttataatataatatatgttcactactaagggtagaattttttactttatgttattaaagcagctacatgtataatctggttttagttcccttgatgagttaattaactcaagaataatatgtgtaataaacgtattgtaatggagtattaacaacgtatgtacgtagtaaatgaatttgagggagtgatatgtggtttttaacttattaatcaataacataatgcagtattgttatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85725" stop="84783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85425" g_stop="85095" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="364"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E239266" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85425" e_stop="85095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTT</genome_strand>
        <mrna_strand>ACCACCAAAGCCCCAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTTTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGGGTAGAATTTTTTACTTTATGTTATTAAAGCAGCTACATGTATAATCTGGTTTTAGTTCCCTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAAACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747502" ref_strand="+" ref_description="SGN-E747502 [GI|33440357]">
      <seq>ggcacgaggaaaaatcatcagtagctaaaatgatcagcttcttcagagctttctttcttataataattatcagctttctcattttcgtaggagctcaagcaagaactttactaggaaattaccatgatgatgagatgctgatagagttgaagttggaaagtggtaattatggaaggacaccatataagacacctccaccaccaacatcatcttcaccaacacatcaagaaatagttaatggaagacatgatagtgtattaccacctccttctcccaagactgatccaattattggtcaactcacaacaattactactactcctcatcatgacgacaccgtcgcggcgccgcctgttggtgggaggcacgattatgtagcctcaccaccaccaccaaagccacaagatgaacaaaggcagatcattatcacatcctcttcttctactttgcctcttcaagcttcctattaagctagcatcggaactttataatataatatatgttcactactaagtgtagtattttttattttatgttattaaagtagctacatgtataatctggttttagttcacttgatgagttaattaactcaagaataatatgtgtaatagacgtattgtaatggagtattaacaacgtatgtacgtagtaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86615" stop="84854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86321" g_stop="86208" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86207" i_stop="85700" i_length="508">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="85155" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="659" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="675"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E747502" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86321" e_stop="86208"/>
          <exon e_start="85699" e_stop="85155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAAGAAAAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAGGTACCTACTACTAATTTAATTTAATTTAATTATTCTTTAGTTACCTACTCTATTATATTTACTTAAACATTAGTATTCATTAATTATTCTTTTTAGTTAATCCACTTGAAAATTATTGTTATGGTGGGCTGCATGGATGAGAAAGTAATTAATATAAATTCATAACGTTGTAATTAGAAGATAGTATGCCACTTTTTTTTTTATGAAACACTTCTTTTCTCATACTTATATATGATTTGAGCTAAAATTAATCTACATCTACTTGAGGAAATTAATCAACCTAATCATATACTATCTTTCAGTTTAGTGCACCAAGCATCCATTATTCGCACGTAATCTCATTTCAAAGAGTGTGACATAGACAACCTGTCTTAATATAGCATTAGAGATTTGCTTCATTTTATCTTATAGGTCACGCAGAGACAACCTTAGCGTTGCGTTTTCCCTTTCTATTACTCTAATTAACTTTGAGAAGTTAATAAATAATGTTGCTTACTTGGTTGATCAGGAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGA</genome_strand>
        <mrna_strand>GGCACGAGGAAAAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736253" ref_strand="+" ref_description="SGN-E736253 [LC04DG03]">
      <seq>tctacgtgaagtgctaaagggtttagaataccttcatgatcatggctacattcatcgggatgtcaaagctggaaatattctcattgattcacgtggtggaataaagttgggagatttcggtgtatcggcctacatgtttgattcaggtgacaggcagcatatgcggaatacatttgctggaactccttgttggatggcaccggaggtcatggagcaagtgcatggttacgatttcaaagctgatatttggtcttttggcataactgctttagagcttgctcatggacatgctcctttctcaaaataccctccaatgaaggtgttgctaatgacattgaaaaatgaacctccacgccttgattctgagagggacaggaagttctcgaagtcctttaggcaaatgattgctagttgcttggtaaaagatccttcaaaaaggcctacagccaaaaagttgttgaagcatcctttctttaaaaaagctaggtccaatgattatgtagcaagaacattgttggaaggcttgccatctcttggtgatcgcatgcaagaattgaagaggaaagaagaagaattgctagcacaaaagaagatgccagatgggcagaaagaagaaatgtcacagaatgaatataaacgtgggattagctgctggagctttgatgttgaagatttgaaggcacaggcttccttgattccagatgaggaaattattggtgagaatgaccacggggggagttcagatgcgctcgcaggagttgacaccaaggaaaccggcttcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91374" stop="94941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91674" g_stop="91740" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91741" i_stop="92113" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92114" g_stop="92238" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="192" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92239" i_stop="92466" i_length="228">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92467" g_stop="92511" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="237" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92512" i_stop="92615" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92616" g_stop="92697" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="319" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92698" i_stop="92780" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92781" g_stop="92849" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="388" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92850" i_stop="92923" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92924" g_stop="93094" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="559" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93095" i_stop="93217" i_length="123">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93218" g_stop="93283" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="625" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93284" i_stop="94192" i_length="909">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94193" g_stop="94261" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="694" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94262" i_stop="94549" i_length="288">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94550" g_stop="94641" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="785" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E736253" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91674" e_stop="91740"/>
          <exon e_start="92114" e_stop="92238"/>
          <exon e_start="92467" e_stop="92511"/>
          <exon e_start="92616" e_stop="92697"/>
          <exon e_start="92781" e_stop="92849"/>
          <exon e_start="92924" e_stop="93094"/>
          <exon e_start="93218" e_stop="93283"/>
          <exon e_start="94193" e_stop="94261"/>
          <exon e_start="94550" e_stop="94641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGTGAAGTGCTAAAGGGTTTAGAATACCTTCATGATCATGGCTACATTCATCGGGATGTCAAAGTATGTCCATCTGTTACATAAGTTTCTTTTCATTAGCCTTTATTAAAGAAATTGATGAGATACATCTTCAAGCATGAGGTTTCTGTAAAAAGTCTTCTGCCCTATTACATAGGGTGTCTATTGGACTTCTATTGCAACTTGCTAATTAATTTCATTTGAGGATCTCTTTGGAGTTTGGACATGGAACCAACAAAGAATATTTAGGATATGTTTGGTGTTTAACATCGCATGTGAATATAACAAAGGACAAATTCTTTACTTCTAGTGGTAATTTTAACCACATGGGCAGTTGAACATCATTAAGCTGTTCAGGACAATTACTTTTCTGGAACATTTGGAACTTGAGGTCACCATACTTGTATGGTTATTGTAGGCTGGAAATATTCTCATTGATTCACGTGGTGGAATAAAGTTGGGAGATTTCGGTGTATCGGCCTACATGTTTGATTCAGGTGACAGGCAGCATATGCGGAATACATTTGCTGGAACTCCTTGTTGGTATGCTTTAATTCAGAGATTGCTTCTGTCTTTTTCCCTATTCAGCTTATGTAATGCATATAATAGTTGATTAAGTGTTGAAGAACATTGGCATGTGTATACATAACACTGAGAATATTTTGCAATAGATGTGTGTACATTCAGTAAACTTGGACATTAAAAATACTGATAAGTTCAGATTCAAAGTACAAGTTGTTGTTTCTCCATAGTTTTATATTTCTTTTACAGGATGGCACCGGAGGTCATGGAGCAAGTGCATGGTTACGATTTCAAGTATCATTTCTGTGCATTTGAATATTCTGATTTTCTTGTACTTTTAAATTATATATTGGAAGTATTTTGTTTTTAAAATATATATTTTGAATGGTTCCCCACAGAGCTGATATTTGGTCTTTTGGCATAACTGCTTTAGAGCTTGCTCATGGACATGCTCCTTTCTCAAAATACCCTCCAATGAAGGTACCGACAGTCACATCCTACATATCCTTTCCTTGTGGATCCTTTCTGACCACAAATGCATTGCTTTTTTTTTCATTTTGCAGGTGTTGCTAATGACATTGAAAAATGAACCTCCACGCCTTGATTCTGAGAGGGACAGGAAGTTCTCGAAGGTATTTATCATACTATCAATGTTTATCCTTCAATGATGTTGTTAACATCTGTGCTATTCTTTTTTCCTTCTCAGTCCTTTAGGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAAAGGCCTACAGCCAAAAAGTTGTTGAAGCATCCTTTCTTTAAAAAAGCTAGGTCCAATGATTATGTAGCAAGAACATTGTTGGAAGGCTTGCCATCTCTTGGTGATCGCATGCAAGAATTGAAGGTCTGTTGCCATTCCATAATAAGATTCAAAATTCCCTCGTTTTTGAGGTCATATATGTTTCCATCTAAATGACAGCATAGCCTCAGTATTTCTATGGATACAACCACCTTTTCTTAATTGTAGAGGAAAGAAGAAGAATTGCTAGCACAAAAGAAGATGCCAGATGGGCAGAAAGAAGAAATGTCACAGGTTGGTGCGTCATAACCATAGCAATATCACTAGTTGACGACTCTGATGGTTTGATATATGTATACTATGATATTATATATTACAAGTGGCATTTGTGATTCTATAATCATAAGGATTTTTAGACCTGCATGAGCAATAATATATGATTGCTATACACACTGTTTCTAGAGTATGCATTCAGTATCCTGCTTGTTTTTATTCACACCCACATACATGTATATATATGCTAGGCTTGCATTTGACAATTAGATGGTTCCTTTTCTATTAAAAGTTCTTATTTCTCGTAAATATGTAACAGAAACAGAAAAGGAGAAAATCAGAAGTACAAGTGGCAACTCATACAACTCACTGGGTTAAATTGATATAGCAGATGAACTTATGTAATACTACTTTTTAGTGATTTAGACTTAAAACAGGATACTGGCAGTTTGCTGGGAAAAGAGATTGAGGGATTTTATTTAGTTTGGCATGCATAGTATTTTGCTATACTTTGTGCCTAATATAACATCATTTTCCACACAGTTCCAATAGATCTACTTCTAGGAATTTAAACAATACCACACCTATGTTTTCCCAGAAAAAGCTTCACTAGAATTTTAGGATTGCCACTTTATGGGAAAAGCCTTTTCTTAACTTGGAGGTTACTATTTGATAATTCAACCCAGACAGAGATCTATAGTACTAAGATACAACTTCTAGCTGACAGTAAAACAGAAAAGAACTTAACTACGTCTGATACAATAAATATGAAGAATTACGCTTAAAGCAAAGAAAAGAAACAAACTTAAAATCGTAATTGTTCCCAGCCATTTTTCTTTTTTTTTTCTGGCCTATAGTTAAGGTACATGTTTTGAAAGTCCCTTTTAACATCATAATTTGAACCTTACTCTGCTTCAACATCATGTGCAGAATGAATATAAACGTGGGATTAGCTGCTGGAGCTTTGATGTTGAAGATTTGAAGGCACAGGCTTCCTTGGTATTTGAACCTATATTTTATTGCACTTGTTCTAATAAAATATTCATACAAGTGTGCTTTAGCCTTTGATTTTCGATAAGAAATGCATGTGATGTGAAGAGGGCATAGTGGCGCTCTGGTTTTCTCAAACACAAATTTGTCAAGTCTTTTAAATATTAATGATTCACCTTCGCAACTGCTATAAGACGACTTCACATCTGGATTATCCTTTGTGGATTTTTTTCCCCCTAAAAGCAAGGGATATGCAAGTTTGCAACCAATATCATTTTTTCCTCTTTTTACTTTTAGATTCCAGATGAGGAAATTATTGGTGAGAATGACCACGGGGGGAGTTCAGATGCGCTCGCAGGAGTTGACAACCAAGGAAACCGGCTTCAATA</genome_strand>
        <mrna_strand>TCTACGTGAAGTGCTAAAGGGTTTAGAATACCTTCATGATCATGGCTACATTCATCGGGATGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................GCTGGAAATATTCTCATTGATTCACGTGGTGGAATAAAGTTGGGAGATTTCGGTGTATCGGCCTACATGTTTGATTCAGGTGACAGGCAGCATATGCGGAATACATTTGCTGGAACTCCTTGTTG....................................................................................................................................................................................................................................GATGGCACCGGAGGTCATGGAGCAAGTGCATGGTTACGATTTCAA........................................................................................................AGCTGATATTTGGTCTTTTGGCATAACTGCTTTAGAGCTTGCTCATGGACATGCTCCTTTCTCAAAATACCCTCCAATGAAG...................................................................................GTGTTGCTAATGACATTGAAAAATGAACCTCCACGCCTTGATTCTGAGAGGGACAGGAAGTTCTCGAAG..........................................................................TCCTTTAGGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAAAGGCCTACAGCCAAAAAGTTGTTGAAGCATCCTTTCTTTAAAAAAGCTAGGTCCAATGATTATGTAGCAAGAACATTGTTGGAAGGCTTGCCATCTCTTGGTGATCGCATGCAAGAATTGAAG...........................................................................................................................AGGAAAGAAGAAGAATTGCTAGCACAAAAGAAGATGCCAGATGGGCAGAAAGAAGAAATGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAATATAAACGTGGGATTAGCTGCTGGAGCTTTGATGTTGAAGATTTGAAGGCACAGGCTTCCTTG................................................................................................................................................................................................................................................................................................ATTCCAGATGAGGAAATTATTGGTGAGAATGACCACGGGGGGAGTTCAGATGCGCTCGCAGGAGTTGAC-ACCAAGGAAACCGGCTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377495" ref_strand="+" ref_description="SGN-E377495 [TUS-20-L7](-)">
      <seq>ttaacaggcaagattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattacatcctgcatccatggcaaggttagctgaacagatgaagttagacctttcatatagataagatacacaaaaattcaagaggcattagttgctgcacctgtggagtcggccacttgcctcattgcactaagaatactctcctgttaaaataaaaacagttttacaacgtttttaagcagaacaaaaaaacttagcaagtcataattttagatccattcttactcttccaataatagttgcctgtaaagcattctgcaacactgggaatatggactgggaagaatgattagctggtgtaggatcactcggcaatggttgagtagcagtcagattttctggagtcgcctgcataatccataacttcttttcataaaaacaataaagaaaacggaaaagaagctgagataagatcagtggtttaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97987" stop="96683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97687" g_stop="96993" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="719"/>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E377495" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97687" e_stop="96993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTCTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</genome_strand>
        <mrna_strand>TTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTTTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377496" ref_strand="+" ref_description="SGN-E377496 [TUS-20-L7]">
      <seq>agaaacaagtataaaaaaaaggggggaaaaggcaaccctagtgctggagttgaactcagttggaaagcagcccataccttcaccctaaaagtgggatgaaatttaaatctgttaactctggtatctcatttacaaagtcagttatctcctacactttgatgtagacttcacacaaatttttgtcactttgggcttttgttttctgttttatatttttgaagctcttcctgggaacgctcgagcctacacatcaagtaaacagacgcttcaagactactatttatgatatccaaaattaacaggcaagattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattacatcctgcatccatggcaaggttagctgaacagatgaagttagacctttcatatagataagatacacaaaaattcaagaggcattagttgctgcacctgtggagtcggccacttgcctcattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98282" stop="96983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97982" g_stop="97283" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E377496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97982" e_stop="97283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCA</genome_strand>
        <mrna_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231959" ref_strand="+" ref_description="SGN-E231959 [cLED-7-C19]">
      <seq>agaaacaagtataaaaaaaaggggggaaaaggcaaccctagtgctggagttgaactcagttggaaagcagcccataccttcaccctaaaagtgggatgaaatttaaatctgttaactctggtatctcatttacaaagtcagttatctcctacactttgatgtagacttcacacaaatttttgtcactttgggcttttgttttctgttttatatttttgaagctcttcctgggaacgctcgagcctacacatcaagtaaacagacgcttcaagactactatttatgatatcccaaatttaacaggcaggattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98282" stop="97106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97982" g_stop="97406" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E231959" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97982" e_stop="97406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATAT-CCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACA</genome_strand>
        <mrna_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCCAAATTTAACAGGCAGGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257865" ref_strand="+" ref_description="SGN-E257865 [cLEG-39-J7]">
      <seq>cgagtttttttttttttttttttttagagaatatcattcttggtgatattaattcatatttctatttaaaacctttacaagaatttgccccgtttttcttggttgcgccatcggaaagattgtcgtgggaggtaaaataccttttttattaaagtgtatttttctacacgtagtttcagtagctaaattaacctcagttaagattggctcactcgaatgggttgagattcttccatattttggtgacttgaatctctcttgctaaccattatcatgcttctccgctagttcgtgccttgatgtactttccttgtccctggttctacttttcgcctaaaatacactaggagctgagttgaagaaatcttagtgccatgggatgcttaccttcagagagttgatcaggctttataatttccacaatgtccccatcaaccagcaggcacactatatcagctattctctgtatttgcttgatgctatgagaaactatcacaattgtcatcttctgatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="+" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61827" stop="98822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98004" g_stop="98522" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="+" ref_id="SGN-E257865" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98004" e_stop="98522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGAGTACATGTTGAAGTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTAGCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATCTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</genome_strand>
        <mrna_strand>CGAGTTT-TTTTTTTTTTTTTTTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTACCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATGTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259979" ref_strand="+" ref_description="SGN-E259979 [cLEG-51-N7]">
      <seq>ctgtgtgcagataattaagtaactacactgaatctcagtttggtaactcacataccatggagatatcacaaagttggagcaaaattagtcctcagctccatagctcacactccttggagatttcattaggagaaagagggcatctactagcagtggaaatgaatgatattaaaggtgcaacagaaactaagattgaggttagggaactgaacaaggtatcagataagggtgattctatactgaagagtgttagagttgacataacaagaggagtaatcatggggattattggccccagtggtagcggaaaatcaacaattttacgagcgctaaatcgattatgggaacccctaagggcactgtttttcttgatggtactgatatttgtgatctggatgtgctctgtcttcgtcgtaaggttggcatgttgttccagcttccagttctctttgaaggtatggttgttaaattgctaagatcaaactaaaaacgctaacctattagtaaattagacagacttgaacttgaccaatttgaaagttcactgtgtctgatacnatcacagtaactactgatgcttgattcatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100112" stop="98573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99812" g_stop="99684" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99683" i_stop="99337" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99336" g_stop="98873" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="593" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E259979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99812" e_stop="99684"/>
          <exon e_start="99336" e_stop="98873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAGGTATGTTGAAGCAAAACTCATCATCTATATGATTCTAGTGTACGTTATAATTAAAAAAAGGATCTAGTTAATCCATTTCAAGACTTCTTTTGGGGGGCCTTAGATAAATTCAGATTCACCATGAAAATTCTCACTTTTGATGGAATAGTTTGGGTGTGCCTCAACTAATTTTACGAATATGTGCTACCTCTAACCTTTCTTTTAATGTTTCATCAAAATGCTTTAACATAGATTATTTTCCTGCTAAGTAAAATAAAATGTTTTGTTGATGAATGATGAAATGTAATTGGACTTTAGAATTGTATAGTCATTTTTTCTTTCTTGAAATCTGTGACAATGGTGAGCAGGAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACAATCACAGTAACTACTGATGCTTGATTCATGAATAT</genome_strand>
        <mrna_strand>CTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG...........................................................................................................................................................................................................................................................................................................................................................GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACNATCACAGTAACTACTGATGCTTGATTCATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246975" ref_strand="+" ref_description="SGN-E246975 [cLEF-41-K19]">
      <seq>aaagacttgtcttcttcatttggcacttctgtgtgcagataattaagtaactacactgaatctcagtttggtaactcacataccatggagatatcacaaagttggagcaaaattagtcctcagctccatagctcacactccttggagatttcattaggagaaagagggcatctactagcagtggaaatgaatgatattaaaggtgcaacagaaactaagattgaggttagggaactgaacaaggtatcagataagggtgattctatactgaagagtgttagagttgacataacaagaggagtaatcatggggattattggccccagtggtagcggaaaatcaacaattttacgagcgctaaatcgattatgggaacccctaagggcactgtttttcttgatggtactgatatttgtgatctggatgtgctctgtcttcgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066A20-jzGSx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0066A20.1" temp_strand="-" temp_description="C06HBa0066A20.1  AC211035.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100140" stop="98751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99840" g_stop="99684" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99683" i_stop="99337" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99336" g_stop="99051" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="443" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066A20.1" gen_strand="-" ref_id="SGN-E246975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99840" e_stop="99684"/>
          <exon e_start="99336" e_stop="99051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAGGTATGTTGAAGCAAAACTCATCATCTATATGATTCTAGTGTACGTTATAATTAAAAAAAGGATCTAGTTAATCCATTTCAAGACTTCTTTTGGGGGGCCTTAGATAAATTCAGATTCACCATGAAAATTCTCACTTTTGATGGAATAGTTTGGGTGTGCCTCAACTAATTTTACGAATATGTGCTACCTCTAACCTTTCTTTTAATGTTTCATCAAAATGCTTTAACATAGATTATTTTCCTGCTAAGTAAAATAAAATGTTTTGTTGATGAATGATGAAATGTAATTGGACTTTAGAATTGTATAGTCATTTTTTCTTTCTTGAAATCTGTGACAATGGTGAGCAGGAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGT</genome_strand>
        <mrna_strand>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG...........................................................................................................................................................................................................................................................................................................................................................GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>77</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1378" PGL_stop="3012"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1378" e_stop="1397"/>
            <exon e_start="1489" e_stop="1549"/>
            <exon e_start="2195" e_stop="2277"/>
            <exon e_start="2360" e_stop="2440"/>
            <exon e_start="2623" e_stop="3012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1378" e_stop="1397" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.945">
            <gDNA_intron_boundary i_start="1398" i_stop="1488" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1489" e_stop="1549" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="1550" i_stop="2194" i_length="645"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2195" e_stop="2277" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="2278" i_stop="2359" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2360" e_stop="2440" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.964">
            <gDNA_intron_boundary i_start="2441" i_stop="2622" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2623" e_stop="3012" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1378" stop="1397"/>
              <exon start="1489" stop="1549"/>
              <exon start="2195" stop="2277"/>
              <exon start="2360" stop="2440"/>
              <exon start="2623" stop="3012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1391" stop="1397"/>
              <exon start="1489" stop="1549"/>
              <exon start="2195" stop="2277"/>
              <exon start="2360" stop="2440"/>
              <exon start="2623" stop="3012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAAGAGAGTACTCAAAG : ACAGTTGCAGTGGAACCTTATATTGTGAACTACAATGGAGCTCTCTTCCGTCAGTATCCTG : GGCCTTGGCAGGTGATGCTGAAACAGACAGATGGTTCTTTTGTTTGTGTGGCAGAAAGCGCAACTCGCTTCACTCTTAACGAA : ACCAAGGAAGAACTATTGAGAGTCCTCGGATTGCAAGAAGAGAAAGGAAGCTCACTTGAATTTCTCAGAAGAGGATACAAG : ACTGCGACCTGGTGGGAAGAAGATATTGATTTAGAAGCATCCTCTGCATGGCGTAGTTGAACAGAAGAAGAAGATGGCGTGTGGGGTGCAGATTTATGACACACTCAGGTGGTAGAGGAACAAGCTACTAAATTACCAAATTTGTTGATCCAGCATTCCCTTCTGAACAATGCTTTTTGTATTTATTCTACTTTATAGTAACTTGTACTTCAACTAGAAAGAAGGTTTGTCTTAAAGAAGTCCCTAGCCATGAAAGAAAGAATTTGTGTAACACTTAAATTCTCTTTTAGCTCTCTCATTGTTCAACTCGTGTAAAGGTTTTCCACGGCAAAAAGAGCCTTCATCCTCTTTGTTTCTTTAATTGTGCAGCTCATTTGCACTTCTATCCCT</gDNA_template>
            <first_frame> E  Q  E  S  T  Q  R :   Q  L  Q  W  N  L  I  L  *  T  T  M  E  L  S  S  V  S  I  L  :  G  L  G  R  *  C  *  N  R  Q  M  V  L  L  F  V  W  Q  K  A  Q  L  A  S  L  L  T  K :   P  R  K  N  Y  *  E  S  S  D  C  K  K  R  K  E  A  H  L  N  F  S  E  E  D  T  R :   L  R  P  G  G  K  K  I  L  I  *  K  H  P  L  H  G  V  V  E  Q  K  K  K  M  A  C  G  V  Q  I  Y  D  T  L  R  W  *  R  N  K  L  L  N  Y  Q  I  C  *  S  S  I  P  F  *  T  M  L  F  V  F  I  L  L  Y  S  N  L  Y  F  N  *  K  E  G  L  S  *  R  S  P  *  P  *  K  K  E  F  V  *  H  L  N  S  L  L  A  L  S  L  F  N  S  C  K  G  F  P  R  Q  K  E  P  S  S  S  L  F  L  *  L  C  S  S  F  A  L  L  S   </first_frame>
            <second_frame>  N  K  R  V  L  K   : D  S  C  S  G  T  L  Y  C  E  L  Q  W  S  S  L  P  S  V  S  W :   A  L  A  G  D  A  E  T  D  R  W  F  F  C  L  C  G  R  K  R  N  S  L  H  S  *  R   : N  Q  G  R  T  I  E  S  P  R  I  A  R  R  E  R  K  L  T  *  I  S  Q  K  R  I  Q   : D  C  D  L  V  G  R  R  Y  *  F  R  S  I  L  C  M  A  *  L  N  R  R  R  R  W  R  V  G  C  R  F  M  T  H  S  G  G  R  G  T  S  Y  *  I  T  K  F  V  D  P  A  F  P  S  E  Q  C  F  L  Y  L  F  Y  F  I  V  T  C  T  S  T  R  K  K  V  C  L  K  E  V  P  S  H  E  R  K  N  L  C  N  T  *  I  L  F  *  L  S  H  C  S  T  R  V  K  V  F  H  G  K  K  S  L  H  P  L  C  F  F  N  C  A  A  H  L  H  F  Y  P  </second_frame>
            <third_frame>   T  R  E  Y  S  K  :  T  V  A  V  E  P  Y  I  V  N  Y  N  G  A  L  F  R  Q  Y  P   : G  P  W  Q  V  M  L  K  Q  T  D  G  S  F  V  C  V  A  E  S  A  T  R  F  T  L  N  E  :  T  K  E  E  L  L  R  V  L  G  L  Q  E  E  K  G  S  S  L  E  F  L  R  R  G  Y  K  :  T  A  T  W  W  E  E  D  I  D  L  E  A  S  S  A  W  R  S  *  T  E  E  E  D  G  V  W  G  A  D  L  *  H  T  Q  V  V  E  E  Q  A  T  K  L  P  N  L  L  I  Q  H  S  L  L  N  N  A  F  C  I  Y  S  T  L  *  *  L  V  L  Q  L  E  R  R  F  V  L  K  K  S  L  A  M  K  E  R  I  C  V  T  L  K  F  S  F  S  S  L  I  V  Q  L  V  *  R  F  S  T  A  K  R  A  F  I  L  F  V  S  L  I  V  Q  L  I  C  T  S  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1380" stop="1397"/>
                    <exon start="1489" stop="1549"/>
                    <exon start="2195" stop="2277"/>
                    <exon start="2360" stop="2440"/>
                    <exon start="2623" stop="2682"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TREYSKTVAVEPYIVNYNGALFRQYPGPWQVMLKQTDGSFVCVAESATRFTLNETKEELLRVLGLQEEKGSSLEFLRRGYKTATWWEEDIDLEASSAWRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5686" PGL_stop="5205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5686" e_stop="5205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="5686" e_stop="5205" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5686" stop="5205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5686" stop="5205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5685" stop="5205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAAGGGGCCAAAAATAAAGAGGAGGCGGCCATGAAAATGTGGAAACCGACAAGAGTGATATGATTTGGATCAACTTTATAAAATGAGAAACGATAGCCATAACTTTGCAAGGGTCACGTCCACTTCCACAGAGATGAACCCATTTTTGAGGATGTGTCCAGAGATAGTAGTAAAATGGAAATGGTGATATCACTGCTAAACATGCCCATAATCCCATTTTCACTGATACGATTGTTTCTGTCTTTAACCTCAATGCTCAAAGTCCACAAAAAGGAAAGTCCCTTTCAAGTTTCGACGACAACTCTAATGTGTCAGCATATTTTCTAAGGTTTGGGCCATATTGTTGGGCTTGCTGGAAATTAGTTGGTTTTTAATCGTATAAATTTAACGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTAATTAAATTAGAATTGACAATAATTTGGGTGAAATATCCGCAA</gDNA_template>
            <first_frame> *  K  G  A  K  N  K  E  E  A  A  M  K  M  W  K  P  T  R  V  I  *  F  G  S  T  L  *  N  E  K  R  *  P  *  L  C  K  G  H  V  H  F  H  R  D  E  P  I  F  E  D  V  S  R  D  S  S  K  M  E  M  V  I  S  L  L  N  M  P  I  I  P  F  S  L  I  R  L  F  L  S  L  T  S  M  L  K  V  H  K  K  E  S  P  F  Q  V  S  T  T  T  L  M  C  Q  H  I  F  *  G  L  G  H  I  V  G  L  A  G  N  *  L  V  F  N  R  I  N  L  T  N  P  I  V  *  F  N  N  Y  I  L  S  R  *  V  *  L  N  *  N  *  Q  *  F  G  *  N  I  R   </first_frame>
            <second_frame>  E  K  G  P  K  I  K  R  R  R  P  *  K  C  G  N  R  Q  E  *  Y  D  L  D  Q  L  Y  K  M  R  N  D  S  H  N  F  A  R  V  T  S  T  S  T  E  M  N  P  F  L  R  M  C  P  E  I  V  V  K  W  K  W  *  Y  H  C  *  T  C  P  *  S  H  F  H  *  Y  D  C  F  C  L  *  P  Q  C  S  K  S  T  K  R  K  V  P  F  K  F  R  R  Q  L  *  C  V  S  I  F  S  K  V  W  A  I  L  L  G  L  L  E  I  S  W  F  L  I  V  *  I  *  R  I  P  *  C  N  S  I  I  T  F  C  P  D  K  F  N  *  I  R  I  D  N  N  L  G  E  I  S  A  </second_frame>
            <third_frame>   K  R  G  Q  K  *  R  G  G  G  H  E  N  V  E  T  D  K  S  D  M  I  W  I  N  F  I  K  *  E  T  I  A  I  T  L  Q  G  S  R  P  L  P  Q  R  *  T  H  F  *  G  C  V  Q  R  *  *  *  N  G  N  G  D  I  T  A  K  H  A  H  N  P  I  F  T  D  T  I  V  S  V  F  N  L  N  A  Q  S  P  Q  K  G  K  S  L  S  S  F  D  D  N  S  N  V  S  A  Y  F  L  R  F  G  P  Y  C  W  A  C  W  K  L  V  G  F  *  S  Y  K  F  N  E  S  H  S  V  I  Q  *  L  H  S  V  P  I  S  L  I  K  L  E  L  T  I  I  W  V  K  Y  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5581" stop="5357"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCKGHVHFHRDEPIFEDVSRDSSKMEMVISLLNMPIIPFSLIRLFLSLTSMLKVHKKESPFQVSTTTLMCQHIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5510" stop="5310"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGNGDITAKHAHNPIFTDTIVSVFNLNAQSPQKGKSLSSFDDNSNVSAYFLRFGPYCWACWKLVGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6950" PGL_stop="7389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6950" e_stop="7389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6950" e_stop="7389" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6950" stop="7389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGTTACTGATCTTTACCTCCCACCTAATTGTACTCAACTAGACTTTGTTCTGAAAGACTAAAAATCAAGGATATTTTGGTGAAGTCCGGTTGGGATAGGATAGAGAATAAATATTGAATTTTTTGAGTTTAGGGTTTAGGGTTCCAGCCAATCTTCCTGAGTAATTCGGGTTTCTTCTATGAGTTTAAGTTCTGTATGATGAGGTAGTGATTAGTGAACCTCATATCATTACTCTTCTATAGCTGCTTATTTACTATAGTTAGCCAATATACATATATTATGCACTATTATCATATATTTTACATTTGCCGGCTACTTTTCTGGGTCGGCGATATGTAAGTTAATTTCCCTGTTTAATATGTAGATTATTTCAGCTCACAGAAGAGTAATGATTCTGAGGTTCACTGCCAAACTTAAAACGTAGTTCTTATTTCTTAA</gDNA_template>
            <first_frame> W  V  T  D  L  Y  L  P  P  N  C  T  Q  L  D  F  V  L  K  D  *  K  S  R  I  F  W  *  S  P  V  G  I  G  *  R  I  N  I  E  F  F  E  F  R  V  *  G  S  S  Q  S  S  *  V  I  R  V  S  S  M  S  L  S  S  V  *  *  G  S  D  *  *  T  S  Y  H  Y  S  S  I  A  A  Y  L  L  *  L  A  N  I  H  I  L  C  T  I  I  I  Y  F  T  F  A  G  Y  F  S  G  S  A  I  C  K  L  I  S  L  F  N  M  *  I  I  S  A  H  R  R  V  M  I  L  R  F  T  A  K  L  K  T  *  F  L  F  L   </first_frame>
            <second_frame>  G  L  L  I  F  T  S  H  L  I  V  L  N  *  T  L  F  *  K  T  K  N  Q  G  Y  F  G  E  V  R  L  G  *  D  R  E  *  I  L  N  F  L  S  L  G  F  R  V  P  A  N  L  P  E  *  F  G  F  L  L  *  V  *  V  L  Y  D  E  V  V  I  S  E  P  H  I  I  T  L  L  *  L  L  I  Y  Y  S  *  P  I  Y  I  Y  Y  A  L  L  S  Y  I  L  H  L  P  A  T  F  L  G  R  R  Y  V  S  *  F  P  C  L  I  C  R  L  F  Q  L  T  E  E  *  *  F  *  G  S  L  P  N  L  K  R  S  S  Y  F  L  </second_frame>
            <third_frame>   G  Y  *  S  L  P  P  T  *  L  Y  S  T  R  L  C  S  E  R  L  K  I  K  D  I  L  V  K  S  G  W  D  R  I  E  N  K  Y  *  I  F  *  V  *  G  L  G  F  Q  P  I  F  L  S  N  S  G  F  F  Y  E  F  K  F  C  M  M  R  *  *  L  V  N  L  I  S  L  L  F  Y  S  C  L  F  T  I  V  S  Q  Y  T  Y  I  M  H  Y  Y  H  I  F  Y  I  C  R  L  L  F  W  V  G  D  M  *  V  N  F  P  V  *  Y  V  D  Y  F  S  S  Q  K  S  N  D  S  E  V  H  C  Q  T  *  N  V  V  L  I  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066A20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9531" PGL_stop="10471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9531" e_stop="9742"/>
            <exon e_start="9982" e_stop="10373"/>
            <exon e_start="10455" e_stop="10471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.962" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.471"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="9531" e_stop="9742" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.962">
            <gDNA_intron_boundary i_start="9743" i_stop="9981" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9982" e_stop="10373" e_length="392"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="10374" i_stop="10454" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.471">
            <gDNA_exon_boundary e_start="10455" e_stop="10471" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9531" stop="9742"/>
              <exon start="9982" stop="10373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9545" stop="9742"/>
              <exon start="9982" stop="10373"/>
              <exon start="10455" stop="10471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAAGAGTGGAAGCAAAACACATCACTCCTTTATTAATCTCCAGTCATTTCGTTCTTTATTGCAACAAAGAGCACACTGTAAACCCTTTAATTTTCAACCAAACATACAAGTAGAGGAAGAGGAGATGGAGGATTTGTGGCAAAAAATGGTCTTTCCGGTTAGACGTGTTTGGGGTGCTGTTTCTGCTCGTGTCAAGCCTCGTAAAGATG : GTGCTGGATTACTGAAGCTTCAAGGCGATATACAGTCCTGTGGATATGAGGATGTACAGGTGATGTGGGAAATGCTTGGAGGGACGGATTCAGAGTTGACATCTCGGCACATCAAGCGTAAAGCGCCAACGGTTGTTTAGGCATTTTGAACGGTTAGCGCTAAACCATCCTCCTCTCCAGATCACACCATTGAGATGGTATGCTGCACTGCAGAAATAAGAGTATCTGAAGAGTGAAGAGATGTATGTTACTTGTAATTTTCAAGCCCCCAGGTAGATAGGGGGACTTTCATGACAACATTATCAGTTGTAAATATACCATCGCCCTGATGATGTATGAAAATTCGGCACTAAATAAATAAAAAGAACTATGAAGAGCTCATTTTTTTCCTA : ACACAACTCTAATAAAT</gDNA_template>
            <first_frame> H  Q  E  W  K  Q  N  T  S  L  L  Y  *  S  P  V  I  S  F  F  I  A  T  K  S  T  L  *  T  L  *  F  S  T  K  H  T  S  R  G  R  G  D  G  G  F  V  A  K  N  G  L  S  G  *  T  C  L  G  C  C  F  C  S  C  Q  A  S  *  R  W :   C  W  I  T  E  A  S  R  R  Y  T  V  L  W  I  *  G  C  T  G  D  V  G  N  A  W  R  D  G  F  R  V  D  I  S  A  H  Q  A  *  S  A  N  G  C  L  G  I  L  N  G  *  R  *  T  I  L  L  S  R  S  H  H  *  D  G  M  L  H  C  R  N  K  S  I  *  R  V  K  R  C  M  L  L  V  I  F  K  P  P  G  R  *  G  D  F  H  D  N  I  I  S  C  K  Y  T  I  A  L  M  M  Y  E  N  S  A  L  N  K  *  K  E  L  *  R  A  H  F  F  P   : N  T  T  L  I  N </first_frame>
            <second_frame>  I  K  S  G  S  K  T  H  H  S  F  I  N  L  Q  S  F  R  S  L  L  Q  Q  R  A  H  C  K  P  F  N  F  Q  P  N  I  Q  V  E  E  E  E  M  E  D  L  W  Q  K  M  V  F  P  V  R  R  V  W  G  A  V  S  A  R  V  K  P  R  K  D   : G  A  G  L  L  K  L  Q  G  D  I  Q  S  C  G  Y  E  D  V  Q  V  M  W  E  M  L  G  G  T  D  S  E  L  T  S  R  H  I  K  R  K  A  P  T  V  V  *  A  F  *  T  V  S  A  K  P  S  S  S  P  D  H  T  I  E  M  V  C  C  T  A  E  I  R  V  S  E  E  *  R  D  V  C  Y  L  *  F  S  S  P  Q  V  D  R  G  T  F  M  T  T  L  S  V  V  N  I  P  S  P  *  *  C  M  K  I  R  H  *  I  N  K  K  N  Y  E  E  L  I  F  F  L  :  T  Q  L  *  *   </second_frame>
            <third_frame>   S  R  V  E  A  K  H  I  T  P  L  L  I  S  S  H  F  V  L  Y  C  N  K  E  H  T  V  N  P  L  I  F  N  Q  T  Y  K  *  R  K  R  R  W  R  I  C  G  K  K  W  S  F  R  L  D  V  F  G  V  L  F  L  L  V  S  S  L  V  K  M  :  V  L  D  Y  *  S  F  K  A  I  Y  S  P  V  D  M  R  M  Y  R  *  C  G  K  C  L  E  G  R  I  Q  S  *  H  L  G  T  S  S  V  K  R  Q  R  L  F  R  H  F  E  R  L  A  L  N  H  P  P  L  Q  I  T  P  L  R  W  Y  A  A  L  Q  K  *  E  Y  L  K  S  E  E  M  Y  V  T  C  N  F  Q  A  P  R  *  I  G  G  L  S  *  Q  H  Y  Q  L  *  I  Y  H  R  P  D  D  V  *  K  F  G  T  K  *  I  K  R  T  M  K  S  S  F  F  S  * :   H  N  S  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9532" stop="9742"/>
                    <exon start="9982" stop="10121"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSGSKTHHSFINLQSFRSLLQQRAHCKPFNFQPNIQVEEEEMEDLWQKMVFPVRRVWGAVSARVKPRKDGAGLLKLQGDIQSCGYEDVQVMWEMLGGTDSELTSRHIKRKAPTVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="16920" PGL_stop="16355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16920" e_stop="16355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="16920" e_stop="16355" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16920" stop="16355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16728" stop="16355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTGACATCAGCCGTTACAACAATTCTTTAGGTGCAAACCCTAATGACATGAATATTCCCATGCCTAACACAAACAAAGAAGAAAAGACATCGTCGTCCGTCGTAGACTGCCCGGAGACACCACCGGAGGTGGAGAAATGTAGGAGGATTACTACATTCCCAGATGACATACAAACGTACTTTGACTGCCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGTAATTATGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGCTCGTAGAGTTT</gDNA_template>
            <first_frame> K  F  *  H  Q  P  L  Q  Q  F  F  R  C  K  P  *  *  H  E  Y  S  H  A  *  H  K  Q  R  R  K  D  I  V  V  R  R  R  L  P  G  D  T  T  G  G  G  E  M  *  E  D  Y  Y  I  P  R  *  H  T  N  V  L  *  L  P  R  F  Q  *  *  L  C  G  G  *  S  Y  Y  F  W  R  F  R  V  I  C  V  A  Y  D  V  *  I  M  S  S  T  *  G  I  F  I  F  F  S  L  L  R  I  *  T  R  D  L  *  L  K  L  E  Q  P  H  L  T  I  A  P  Q  L  V  T  *  R  V  Y  Q  L  F  L  S  F  D  I  L  K  N  *  L  L  S  T  L  F  Q  E  R  *  E  I  K  G  I  E  *  Y  Y  L  C  F  L  V  I  M  W  L  F  K  L  *  C  L  D  E  *  G  S  *  S   </first_frame>
            <second_frame>  N  F  D  I  S  R  Y  N  N  S  L  G  A  N  P  N  D  M  N  I  P  M  P  N  T  N  K  E  E  K  T  S  S  S  V  V  D  C  P  E  T  P  P  E  V  E  K  C  R  R  I  T  T  F  P  D  D  I  Q  T  Y  F  D  C  Q  D  S  S  S  S  F  V  E  D  S  H  I  I  F  G  D  L  E  S  F  V  L  P  M  M  F  E  S  C  H  Q  L  E  E  F  L  S  F  S  P  Y  S  E  F  E  L  E  T  S  D  *  S  W  S  N  L  T  S  P  L  H  H  N  W  L  R  E  G  Y  I  N  C  F  L  V  L  I  F  *  R  I  N  Y  *  V  L  Y  F  K  R  G  E  K  L  R  V  *  S  S  I  I  Y  V  S  *  *  L  C  G  C  L  N  F  N  V  *  M  N  E  A  R  R  V  </second_frame>
            <third_frame>   I  L  T  S  A  V  T  T  I  L  *  V  Q  T  L  M  T  *  I  F  P  C  L  T  Q  T  K  K  K  R  H  R  R  P  S  *  T  A  R  R  H  H  R  R  W  R  N  V  G  G  L  L  H  S  Q  M  T  Y  K  R  T  L  T  A  K  I  P  V  V  A  L  W  R  I  V  I  L  F  L  E  I  *  S  H  L  C  C  L  *  C  L  N  H  V  I  N  L  R  N  F  Y  L  F  L  P  T  Q  N  L  N  S  R  P  L  I  K  V  G  A  T  S  P  H  H  C  T  T  I  G  Y  V  K  G  I  S  I  V  S  *  F  *  Y  F  E  E  L  I  I  E  Y  F  I  S  R  E  V  R  N  *  G  Y  R  V  V  L  F  M  F  L  S  N  Y  V  V  V  *  T  L  M  F  R  *  M  R  L  V  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16919" stop="16572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFDISRYNNSLGANPNDMNIPMPNTNKEEKTSSSVVDCPETPPEVEKCRRITTFPDDIQTYFDCQDSSSSFVEDSHIIFGDLESFVLPMMFESCHQLEEFLSFSPYSEFELETSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="21033" PGL_stop="19107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21033" e_stop="20682"/>
            <exon e_start="19558" e_stop="19528"/>
            <exon e_start="19353" e_stop="19261"/>
            <exon e_start="19169" e_stop="19107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.878" acc_prob="0.465" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21033" e_stop="20682" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.878" acc_prob="0.465">
            <gDNA_intron_boundary i_start="20681" i_stop="19559" i_length="1123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19558" e_stop="19528" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="19527" i_stop="19354" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19353" e_stop="19261" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.951">
            <gDNA_intron_boundary i_start="19260" i_stop="19170" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19169" e_stop="19107" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21033" stop="20682"/>
              <exon start="19558" stop="19528"/>
              <exon start="19353" stop="19261"/>
              <exon start="19169" stop="19107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACCACAACACCAGCTAACCAACCAACCATTGCCATGGCTATGGCCATCACCACGGCCTTACAGTTACAGTCACTTCCTTCTTCCTTCCCTCTTCTTCGCTCTCCCTTTATCTCTTTTTCCTTTTCCCTTTCCCTCATTTGCCCACGCTTCCACTCTCCCAAAACCTCCGTAAAATCATCAGTACTTCCCTTGAAGGGAATTCAGTGCATCAAGAATGAAGTGGGAGCTGACCCAAAAAAAGGTGTCAGTGTTTACAAGCCTAAATCATACCAAGTCCTTGTTTCTGATGCCGCAGATTCTCTATTTTATGCCCTTAATGACGGAAAGACCAGACTCGAAATTGACTTCCC : GCCCTTGCCCACCAGCATTTCTTCTTATAAG : GGGTCTTCGGATGAGTTCAGTGATGCCAATATCCAACTTGTACTAGCTGTTGTTAAGAAGCTTCAGGAAAAGATGGAAACTAGAGCTTGTGTG : GTGTTTCCCGACAAACCAGAAAAGCGTAGGGCCAGCGATCTTTTCAAAGCAGCTCTTGACTCG</gDNA_template>
            <first_frame> P  P  Q  H  Q  L  T  N  Q  P  L  P  W  L  W  P  S  P  R  P  Y  S  Y  S  H  F  L  L  P  S  L  F  F  A  L  P  L  S  L  F  P  F  P  F  P  S  F  A  H  A  S  T  L  P  K  P  P  *  N  H  Q  Y  F  P  *  R  E  F  S  A  S  R  M  K  W  E  L  T  Q  K  K  V  S  V  F  T  S  L  N  H  T  K  S  L  F  L  M  P  Q  I  L  Y  F  M  P  L  M  T  E  R  P  D  S  K  L  T  S   : R  P  C  P  P  A  F  L  L  I  R :   G  L  R  M  S  S  V  M  P  I  S  N  L  Y  *  L  L  L  R  S  F  R  K  R  W  K  L  E  L  V  W :   C  F  P  T  N  Q  K  S  V  G  P  A  I  F  S  K  Q  L  L  T   </first_frame>
            <second_frame>  H  H  N  T  S  *  P  T  N  H  C  H  G  Y  G  H  H  H  G  L  T  V  T  V  T  S  F  F  L  P  S  S  S  L  S  L  Y  L  F  F  L  F  P  F  P  H  L  P  T  L  P  L  S  Q  N  L  R  K  I  I  S  T  S  L  E  G  N  S  V  H  Q  E  *  S  G  S  *  P  K  K  R  C  Q  C  L  Q  A  *  I  I  P  S  P  C  F  *  C  R  R  F  S  I  L  C  P  *  *  R  K  D  Q  T  R  N  *  L  P  :  A  L  A  H  Q  H  F  F  L  *   : G  V  F  G  *  V  Q  *  C  Q  Y  P  T  C  T  S  C  C  *  E  A  S  G  K  D  G  N  *  S  L  C   : G  V  S  R  Q  T  R  K  A  *  G  Q  R  S  F  Q  S  S  S  *  L  </second_frame>
            <third_frame>   T  T  T  P  A  N  Q  P  T  I  A  M  A  M  A  I  T  T  A  L  Q  L  Q  S  L  P  S  S  F  P  L  L  R  S  P  F  I  S  F  S  F  S  L  S  L  I  C  P  R  F  H  S  P  K  T  S  V  K  S  S  V  L  P  L  K  G  I  Q  C  I  K  N  E  V  G  A  D  P  K  K  G  V  S  V  Y  K  P  K  S  Y  Q  V  L  V  S  D  A  A  D  S  L  F  Y  A  L  N  D  G  K  T  R  L  E  I  D  F  P :   P  L  P  T  S  I  S  S  Y  K  :  G  S  S  D  E  F  S  D  A  N  I  Q  L  V  L  A  V  V  K  K  L  Q  E  K  M  E  T  R  A  C  V  :  V  F  P  D  K  P  E  K  R  R  A  S  D  L  F  K  A  A  L  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21031" stop="20682"/>
                    <exon start="19558" stop="19528"/>
                    <exon start="19353" stop="19261"/>
                    <exon start="19169" stop="19107"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTPANQPTIAMAMAITTALQLQSLPSSFPLLRSPFISFSFSLSLICPRFHSPKTSVKSSVLPLKGIQCIKNEVGADPKKGVSVYKPKSYQVLVSDAADSLFYALNDGKTRLEIDFPPLPTSISSYKGSSDEFSDANIQLVLAVVKKLQEKMETRACVVFPDKPEKRRASDLFKAALDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="22663" PGL_stop="21450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22663" e_stop="22615"/>
            <exon e_start="22527" e_stop="22186"/>
            <exon e_start="22107" e_stop="22060"/>
            <exon e_start="21879" e_stop="21450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22663" e_stop="22615" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22614" i_stop="22528" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22527" e_stop="22186" e_length="342"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.978">
            <gDNA_intron_boundary i_start="22185" i_stop="22108" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22107" e_stop="22060" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22059" i_stop="21880" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21879" e_stop="21450" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22663" stop="22615"/>
              <exon start="22527" stop="22186"/>
              <exon start="22107" stop="22060"/>
              <exon start="21879" stop="21847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22320" stop="22186"/>
              <exon start="22107" stop="22060"/>
              <exon start="21879" stop="21450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554248" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTAGATTGAAAAGCAGGCTTGTTGCTTTGACTCGTAGAGTTCAGAAG : GTTAGAGATGAGATAGAGCAGCTTATGGATGATGATGGAGACATGGCTGAGATGTACCTCACTGAGAAGAAAAGGCGGATGGAATTGTCTTGCTATGGAGATCAATCATTGCTTGGCTACAGGTCAACAGATGGTGCATTGTCTTTGTCTGCTCCAGTTTCCCCTGTTTCTTCACCCCCTGAGAGCAGGAGGCTTGAAAAAAGCTTGAGCATAGCAAGAAGCAGGCATGAAAGCATGAGAAGTTCGGAAAGTGGCACTGAAACTCAGAGTATAGAAGAACTGGAGATGCTCTTGGAAGCTTATTTTGTTGTCATTGACAGCACCCTCAACAAGTTAACATCG : TTGAAGGAGTATATTGATGATACCGAAGATTTCATCAACATTCAACTG : GATAATGTACGGAATCAGCTTATTCAATTTGAGTTGCTACTTACAACTGCAACCTTTGTGGTTGCCATCTTTGGGGTTGTGGCAGGAATTTTTGGGATGAATTTTGAAATACCCATGTTTAATGAACCAAATGCATTCAAATGGGTCTTAATAATTACAGGTGTAACTGGAGCAGTGATATTCTTTGCATTTTTATGGTTCTTCAAATATAGAAGATTGATGCCACTGTAGATTCTCAACAGCATGGACGGCCTGCTGGTGATATTTAAAGCCATTTGACAGTGGATCCTATTAATGAAATAAATACACGAGCCTACGAGAAATAAGTGTATCTGTCGATGTTATGCCAGAAAAGGTGATGGATCTACTGAATTATGTGGTATCTAATACGACTGGCCGTATAGCCTAATAGTAGCTTCAAAGTTTGTAG</gDNA_template>
            <first_frame> S  *  I  E  K  Q  A  C  C  F  D  S  *  S  S  E   : G  *  R  *  D  R  A  A  Y  G  *  *  W  R  H  G  *  D  V  P  H  *  E  E  K  A  D  G  I  V  L  L  W  R  S  I  I  A  W  L  Q  V  N  R  W  C  I  V  F  V  C  S  S  F  P  C  F  F  T  P  *  E  Q  E  A  *  K  K  L  E  H  S  K  K  Q  A  *  K  H  E  K  F  G  K  W  H  *  N  S  E  Y  R  R  T  G  D  A  L  G  S  L  F  C  C  H  *  Q  H  P  Q  Q  V  N  I   : V  E  G  V  Y  *  *  Y  R  R  F  H  Q  H  S  T   : G  *  C  T  E  S  A  Y  S  I  *  V  A  T  Y  N  C  N  L  C  G  C  H  L  W  G  C  G  R  N  F  W  D  E  F  *  N  T  H  V  *  *  T  K  C  I  Q  M  G  L  N  N  Y  R  C  N  W  S  S  D  I  L  C  I  F  M  V  L  Q  I  *  K  I  D  A  T  V  D  S  Q  Q  H  G  R  P  A  G  D  I  *  S  H  L  T  V  D  P  I  N  E  I  N  T  R  A  Y  E  K  *  V  Y  L  S  M  L  C  Q  K  R  *  W  I  Y  *  I  M  W  Y  L  I  R  L  A  V  *  P  N  S  S  F  K  V  C   </first_frame>
            <second_frame>  R  R  L  K  S  R  L  V  A  L  T  R  R  V  Q  K  :  V  R  D  E  I  E  Q  L  M  D  D  D  G  D  M  A  E  M  Y  L  T  E  K  K  R  R  M  E  L  S  C  Y  G  D  Q  S  L  L  G  Y  R  S  T  D  G  A  L  S  L  S  A  P  V  S  P  V  S  S  P  P  E  S  R  R  L  E  K  S  L  S  I  A  R  S  R  H  E  S  M  R  S  S  E  S  G  T  E  T  Q  S  I  E  E  L  E  M  L  L  E  A  Y  F  V  V  I  D  S  T  L  N  K  L  T  S  :  L  K  E  Y  I  D  D  T  E  D  F  I  N  I  Q  L  :  D  N  V  R  N  Q  L  I  Q  F  E  L  L  L  T  T  A  T  F  V  V  A  I  F  G  V  V  A  G  I  F  G  M  N  F  E  I  P  M  F  N  E  P  N  A  F  K  W  V  L  I  I  T  G  V  T  G  A  V  I  F  F  A  F  L  W  F  F  K  Y  R  R  L  M  P  L  *  I  L  N  S  M  D  G  L  L  V  I  F  K  A  I  *  Q  W  I  L  L  M  K  *  I  H  E  P  T  R  N  K  C  I  C  R  C  Y  A  R  K  G  D  G  S  T  E  L  C  G  I  *  Y  D  W  P  Y  S  L  I  V  A  S  K  F  V  </second_frame>
            <third_frame>   V  D  *  K  A  G  L  L  L  *  L  V  E  F  R  R :   L  E  M  R  *  S  S  L  W  M  M  M  E  T  W  L  R  C  T  S  L  R  R  K  G  G  W  N  C  L  A  M  E  I  N  H  C  L  A  T  G  Q  Q  M  V  H  C  L  C  L  L  Q  F  P  L  F  L  H  P  L  R  A  G  G  L  K  K  A  *  A  *  Q  E  A  G  M  K  A  *  E  V  R  K  V  A  L  K  L  R  V  *  K  N  W  R  C  S  W  K  L  I  L  L  S  L  T  A  P  S  T  S  *  H  R :   *  R  S  I  L  M  I  P  K  I  S  S  T  F  N  W :   I  M  Y  G  I  S  L  F  N  L  S  C  Y  L  Q  L  Q  P  L  W  L  P  S  L  G  L  W  Q  E  F  L  G  *  I  L  K  Y  P  C  L  M  N  Q  M  H  S  N  G  S  *  *  L  Q  V  *  L  E  Q  *  Y  S  L  H  F  Y  G  S  S  N  I  E  D  *  C  H  C  R  F  S  T  A  W  T  A  C  W  *  Y  L  K  P  F  D  S  G  S  Y  *  *  N  K  Y  T  S  L  R  E  I  S  V  S  V  D  V  M  P  E  K  V  M  D  L  L  N  Y  V  V  S  N  T  T  G  R  I  A  *  *  *  L  Q  S  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22662" stop="22615"/>
                    <exon start="22527" stop="22186"/>
                    <exon start="22107" stop="22060"/>
                    <exon start="21879" stop="21649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSCYGDQSLLGYRSTDGALSLSAPVSPVSSPPESRRLEKSLSIARSRHESMRSSESGTETQSIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFNEPNAFKWVLIITGVTGAVIFFAFLWFFKYRRLMPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="30817" PGL_stop="28684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30817" e_stop="30170"/>
            <exon e_start="29910" e_stop="29842"/>
            <exon e_start="29117" e_stop="28684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="0.998"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30817" e_stop="30170" e_length="648"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="30169" i_stop="29911" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29910" e_stop="29842" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29841" i_stop="29118" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="29117" e_stop="28684" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30817" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30643" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="29100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30634" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30634" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30634" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30634" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30633" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30620" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30615" stop="30198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30614" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30611" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30608" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30598" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30595" stop="30170"/>
              <exon start="29910" stop="29842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30489" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30489" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="29047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30489" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="29100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30489" stop="30327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30296" stop="30170"/>
              <exon start="29910" stop="29842"/>
              <exon start="29117" stop="28684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29117" stop="28684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269815" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTAGCCTCGATAAGTCATAAAATATTCAGATATATTTTAATTATATTTCTTAAAATTTTAGTGACACGTCATCTCTTCATCAACCACTACCATTCTACCATATATTATTTTTTTTCTCTTATCCCTTTTTCTTCTCTTTTACATACACTTATTTAAACCGACTCTGCTTAACGCTAACAAGCATCTTCCTATTCTATTTTCTTCCCCTGTTTTTCCATCTTTTTGACCTTTATATCAACAATTATTATTCTTTTTTAATAAATATATTAGTCTCATTCATATTTGGTTTGCCGTATTTGATCAGGTCTCGTTGAATACTTCAATTAATTCATAATCTATTTAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGATGAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAATTTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCTTTTAGACAGCTTGCTCTTCAG : TATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGAT : ACTGTGATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATCCAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTAAAAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTTCGATCATTATGTTTCTGTCAAATACCCTAAAACCCATCCATCATCTTCAAACTCAAAGATGGTTTGAGGTTTCTGTATATACTCAAAGGAGGGAGTTGTATATTTTGTACATAGATGGAACCGTTCCACCTCTGTATTTATCAATTCTAATCATGTAATGATATCAATGGAAAATATTATTATATA</gDNA_template>
            <first_frame> Y  *  P  R  *  V  I  K  Y  S  D  I  F  *  L  Y  F  L  K  F  *  *  H  V  I  S  S  S  T  T  T  I  L  P  Y  I  I  F  F  L  L  S  L  F  L  L  F  Y  I  H  L  F  K  P  T  L  L  N  A  N  K  H  L  P  I  L  F  S  S  P  V  F  P  S  F  *  P  L  Y  Q  Q  L  L  F  F  F  N  K  Y  I  S  L  I  H  I  W  F  A  V  F  D  Q  V  S  L  N  T  S  I  N  S  *  S  I  *  T  S  *  S  V  G  *  K  F  I  C  V  I  *  K  T  N  F  F  *  K  K  S  M  A  T  A  M  G  M  M  R  N  V  G  G  Y  G  S  A  S  A  S  W  I  R  L  K  N  R  A  N  K  K  T  K  R  S  E  N  V  K  F  G  V  T  C  V  Y  S  P  S  L  S  D  P  Y  K  T  L  R  I  Q  P  D  A  S  E  S  D  V  R  K  A  F  R  Q  L  A  L  Q  :  Y  H  P  D  V  C  R  G  S  N  C  G  I  Q  F  H  Q  I  N  D  A  Y  D  :  T  V  M  S  N  L  R  G  E  T  K  N  A  E  M  E  I  Y  E  E  Y  D  D  D  D  E  A  M  R  G  V  N  D  P  D  Y  D  M  W  E  E  W  M  G  W  E  G  A  G  I  R  D  Y  S  S  H  I  N  P  Y  I  *  F  L  K  I  N  V  V  V  S  G  L  A  H  M  P  V  L  C  I  I  F  D  H  Y  V  S  V  K  Y  P  K  T  H  P  S  S  S  N  S  K  M  V  *  G  F  C  I  Y  S  K  E  G  V  V  Y  F  V  H  R  W  N  R  S  T  S  V  F  I  N  S  N  H  V  M  I  S  M  E  N  I  I  I   </first_frame>
            <second_frame>  I  S  L  D  K  S  *  N  I  Q  I  Y  F  N  Y  I  S  *  N  F  S  D  T  S  S  L  H  Q  P  L  P  F  Y  H  I  L  F  F  F  S  Y  P  F  F  F  S  F  T  Y  T  Y  L  N  R  L  C  L  T  L  T  S  I  F  L  F  Y  F  L  P  L  F  F  H  L  F  D  L  Y  I  N  N  Y  Y  S  F  L  I  N  I  L  V  S  F  I  F  G  L  P  Y  L  I  R  S  R  *  I  L  Q  L  I  H  N  L  F  K  H  P  N  L  S  V  K  N  S  S  A  *  F  E  R  R  I  F  F  K  K  N  Q  W  R  R  L  W  E  *  *  G  M  L  G  V  M  V  L  P  L  L  H  G  F  V  *  R  I  A  Q  T  K  R  R  R  G  V  R  M  L  N  L  G  L  L  V  F  I  H  L  L  *  V  I  R  T  R  P  *  G  F  N  L  M  L  L  N  L  M  L  E  R  L  L  D  S  L  L  F  S :   I  T  R  M  Y  A  E  E  V  I  A  V  Y  N  F  T  K  S  M  M  H  T  I :   L  *  *  V  T  *  E  V  K  Q  R  M  Q  K  W  R  F  T  K  N  M  T  M  T  M  K  P  *  E  E  *  M  I  Q  I  M  I  C  G  K  N  G  W  D  G  K  E  Q  A  F  G  I  I  R  L  T  S  I  L  I  Y  N  F  *  K  *  T  W  W  Y  L  D  *  L  T  C  P  F  Y  V  L  S  S  I  I  M  F  L  S  N  T  L  K  P  I  H  H  L  Q  T  Q  R  W  F  E  V  S  V  Y  T  Q  R  R  E  L  Y  I  L  Y  I  D  G  T  V  P  P  L  Y  L  S  I  L  I  M  *  *  Y  Q  W  K  I  L  L  Y  </second_frame>
            <third_frame>   L  A  S  I  S  H  K  I  F  R  Y  I  L  I  I  F  L  K  I  L  V  T  R  H  L  F  I  N  H  Y  H  S  T  I  Y  Y  F  F  S  L  I  P  F  S  S  L  L  H  T  L  I  *  T  D  S  A  *  R  *  Q  A  S  S  Y  S  I  F  F  P  C  F  S  I  F  L  T  F  I  S  T  I  I  I  L  F  *  *  I  Y  *  S  H  S  Y  L  V  C  R  I  *  S  G  L  V  E  Y  F  N  *  F  I  I  Y  L  N  I  L  I  C  R  L  K  I  H  L  R  N  L  K  D  E  F  F  L  K  K  I  N  G  D  G  Y  G  N  D  E  E  C  W  G  L  W  F  C  L  C  F  M  D  S  F  E  E  S  R  K  Q  K  D  E  E  E  *  E  C  *  I  W  G  Y  L  C  L  F  T  F  S  E  *  S  V  Q  D  L  E  D  S  T  *  C  F  *  I  *  C  *  K  G  F  *  T  A  C  S  S   : V  S  P  G  C  M  Q  R  K  *  L  R  Y  T  I  S  P  N  Q  *  C  I  R   : Y  C  D  E  *  L  E  R  *  N  K  E  C  R  N  G  D  L  R  R  I  *  R  *  R  *  S  H  E  R  S  E  *  S  R  L  *  Y  V  G  R  M  D  G  M  G  R  S  R  H  S  G  L  F  V  S  H  Q  S  L  Y  I  I  F  K  N  K  R  G  G  I  W  I  S  S  H  A  R  F  M  Y  Y  L  R  S  L  C  F  C  Q  I  P  *  N  P  S  I  I  F  K  L  K  D  G  L  R  F  L  Y  I  L  K  G  G  S  C  I  F  C  T  *  M  E  P  F  H  L  C  I  Y  Q  F  *  S  C  N  D  I  N  G  K  Y  Y  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30412" stop="30170"/>
                    <exon start="29910" stop="29842"/>
                    <exon start="29117" stop="28932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSMATAMGMMRNVGGYGSASASWIRLKNRANKKTKRSENVKFGVTCVYSPSLSDPYKTLRIQPDASESDVRKAFRQLALQYHPDVCRGSNCGIQFHQINDAYDTVMSNLRGETKNAEMEIYEEYDDDDEAMRGVNDPDYDMWEEWMGWEGAGIRDYSSHINPYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30762" stop="30502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSDTSSLHQPLPFYHILFFFSYPFFFSFTYTYLNRLCLTLTSIFLFYFLPLFFHLFDLYINNYYSFLINILVSFIFGLPYLIRSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="35406" PGL_stop="36346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35406" e_stop="36346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="35406" e_stop="36346" e_length="941"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35406" stop="36135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35635" stop="36346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35716" stop="36169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAAGCTATGCCTTGGTTCCATCTTATCAAGAGTGACTGCTATGTTAGACGTGCACTCCTATCGCTTGTCCGTGTTTTACATTCAGTTCTTCACTCTATGAGGGCTCATGGATGTATTAATTTACAAAACTGCAGGGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGAATGGTTGTTGAGAACACTTGTATGTTCTATTTTGACACAGAAAAACTGAATGATTTGTCAGCTGTTTGTGCAAAATTTTCGAAGTAGCAACCTTCGGGTTTGATGTGGAGGTAAAAATAATGCAGATATGATGTGATTTATGATTTTAGAGAAAATATAAGGTAATTTGAAAGGTCA</gDNA_template>
            <first_frame> L  K  A  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  E  *  S  Y  A  L  V  P  S  Y  Q  E  *  L  L  C  *  T  C  T  P  I  A  C  P  C  F  T  F  S  S  S  L  Y  E  G  S  W  M  Y  *  F  T  K  L  Q  G  L  P  T  F  G  R  R  W  H  L  L  W  C  T  I  W  E  E  Y  P  L  G  N  R  V  S  F  W  S  N  K  R  S  S  V  C  R  Q  H  F  E  F  A  S  L  P  L  L  G  S  F  L  V  Y  F  L  M  G  I  G  I  C  I  Y  D  T  N  *  I  Q  G  R  S  S  Y  S  C  K  A  A  F  L  S  L  E  K  I  H  L  P  T  *  R  N  *  C  C  L  L  L  H  S  R  D  G  I  L  F  N  K  V  L  A  S  M  V  S  *  V  L  D  S  F  F  K  I  R  L  S  N  I  L  D  D  S  V  S  F  F  S  F  S  K  *  P  A  *  L  *  T  L  C  L  L  G  F  E  *  K  N  P  G  N  K  E  Q  F  F  L  C  E  W  L  L  R  T  L  V  C  S  I  L  T  Q  K  N  *  M  I  C  Q  L  F  V  Q  N  F  R  S  S  N  L  R  V  *  C  G  G  K  N  N  A  D  M  M  *  F  M  I  L  E  K  I  *  G  N  L  K  G   </first_frame>
            <second_frame>  *  K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  N  E  A  M  P  W  F  H  L  I  K  S  D  C  Y  V  R  R  A  L  L  S  L  V  R  V  L  H  S  V  L  H  S  M  R  A  H  G  C  I  N  L  Q  N  C  R  V  Y  Q  L  L  G  E  D  G  T  Y  Y  G  V  R  F  G  K  N  I  P  W  V  T  E  F  P  F  G  V  I  R  D  P  Q  Y  V  G  S  I  L  S  L  L  A  C  L  S  W  V  P  F  L  Y  I  F  L  W  V  L  G  Y  A  F  M  I  Q  I  E  S  K  E  D  P  A  T  R  A  K  P  L  S  *  V  *  R  R  Y  I  C  Q  L  E  G  T  S  A  A  C  F  C  I  P  E  M  E  S  S  L  I  K  F  L  H  Q  W  F  L  E  F  L  I  P  F  L  K  S  D  S  A  I  F  W  M  I  L  *  V  F  L  V  F  L  N  S  Q  H  S  F  R  P  Y  V  F  *  D  L  N  K  K  I  Q  A  I  K  S  N  F  F  C  V  N  G  C  *  E  H  L  Y  V  L  F  *  H  R  K  T  E  *  F  V  S  C  L  C  K  I  F  E  V  A  T  F  G  F  D  V  E  V  K  I  M  Q  I  *  C  D  L  *  F  *  R  K  Y  K  V  I  *  K  V  </second_frame>
            <third_frame>   K  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  M  K  L  C  L  G  S  I  L  S  R  V  T  A  M  L  D  V  H  S  Y  R  L  S  V  F  Y  I  Q  F  F  T  L  *  G  L  M  D  V  L  I  Y  K  T  A  G  F  T  N  F  W  E  K  M  A  L  T  M  V  Y  D  L  G  R  I  S  L  G  *  Q  S  F  L  L  E  *  *  E  I  L  S  M  S  A  A  F  *  V  C  *  L  A  S  L  G  F  L  S  C  I  F  S  Y  G  Y  W  D  M  H  L  *  Y  K  L  N  P  R  K  I  Q  L  L  V  Q  S  R  F  L  E  S  R  E  D  T  S  A  N  L  K  E  L  V  L  L  A  S  A  F  Q  R  W  N  P  L  *  *  S  S  C  I  N  G  F  L  S  S  *  F  L  F  *  N  Q  T  Q  Q  Y  F  G  *  F  C  K  F  F  *  F  F  *  I  A  S  I  A  L  D  P  M  S  F  R  I  *  I  K  K  S  R  Q  *  R  A  I  F  F  V  *  M  V  V  E  N  T  C  M  F  Y  F  D  T  E  K  L  N  D  L  S  A  V  C  A  K  F  S  K  *  Q  P  S  G  L  M  W  R  *  K  *  C  R  Y  D  V  I  Y  D  F  R  E  N  I  R  *  F  E  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35410" stop="35904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLNEAMPWFHLIKSDCYVRRALLSLVRVLHSVLHSMRAHGCINLQNCRVYQLLGEDGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWVPFLYIFLWVLGYAFMIQIESKEDPATRAKPLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35412" e_stop="35444"/>
            <exon e_start="35655" e_stop="36169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.894" e_score="0.750"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="35412" e_stop="35444" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="35445" i_stop="35654" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35655" e_stop="36169" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35412" stop="35444"/>
              <exon start="35655" stop="36137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35412" stop="35444"/>
              <exon start="35655" stop="35894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35716" stop="36169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : GGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGA</gDNA_template>
            <first_frame> A  F  F  F  F  F  F  F  F  F  F  :  G  L  P  T  F  G  R  R  W  H  L  L  W  C  T  I  W  E  E  Y  P  L  G  N  R  V  S  F  W  S  N  K  R  S  S  V  C  R  Q  H  F  E  F  A  S  L  P  L  L  G  S  F  L  V  Y  F  L  M  G  I  G  I  C  I  Y  D  T  N  *  I  Q  G  R  S  S  Y  S  C  K  A  A  F  L  S  L  E  K  I  H  L  P  T  *  R  N  *  C  C  L  L  L  H  S  R  D  G  I  L  F  N  K  V  L  A  S  M  V  S  *  V  L  D  S  F  F  K  I  R  L  S  N  I  L  D  D  S  V  S  F  F  S  F  S  K  *  P  A  *  L  *  T  L  C  L  L  G  F  E  *  K  N  P  G  N  K  E  Q  F  F  L  C   </first_frame>
            <second_frame>  L  F  F  F  F  F  F  F  F  F  L :   V  Y  Q  L  L  G  E  D  G  T  Y  Y  G  V  R  F  G  K  N  I  P  W  V  T  E  F  P  F  G  V  I  R  D  P  Q  Y  V  G  S  I  L  S  L  L  A  C  L  S  W  V  P  F  L  Y  I  F  L  W  V  L  G  Y  A  F  M  I  Q  I  E  S  K  E  D  P  A  T  R  A  K  P  L  S  *  V  *  R  R  Y  I  C  Q  L  E  G  T  S  A  A  C  F  C  I  P  E  M  E  S  S  L  I  K  F  L  H  Q  W  F  L  E  F  L  I  P  F  L  K  S  D  S  A  I  F  W  M  I  L  *  V  F  L  V  F  L  N  S  Q  H  S  F  R  P  Y  V  F  *  D  L  N  K  K  I  Q  A  I  K  S  N  F  F  C  V  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F   : W  F  T  N  F  W  E  K  M  A  L  T  M  V  Y  D  L  G  R  I  S  L  G  *  Q  S  F  L  L  E  *  *  E  I  L  S  M  S  A  A  F  *  V  C  *  L  A  S  L  G  F  L  S  C  I  F  S  Y  G  Y  W  D  M  H  L  *  Y  K  L  N  P  R  K  I  Q  L  L  V  Q  S  R  F  L  E  S  R  E  D  T  S  A  N  L  K  E  L  V  L  L  A  S  A  F  Q  R  W  N  P  L  *  *  S  S  C  I  N  G  F  L  S  S  *  F  L  F  *  N  Q  T  Q  Q  Y  F  G  *  F  C  K  F  F  *  F  F  *  I  A  S  I  A  L  D  P  M  S  F  R  I  *  I  K  K  S  R  Q  *  R  A  I  F  F  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35413" stop="35444"/>
                    <exon start="35655" stop="35904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFFFFFFFFFLVYQLLGEDGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWVPFLYIFLWVLGYAFMIQIESKEDPATRAKPLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35412" stop="35444"/>
                    <exon start="35655" stop="35861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFFFFFFFFFFGLPTFGRRWHLLWCTIWEEYPLGNRVSFWSNKRSSVCRQHFEFASLPLLGSFLVYFLMGIGICIYDTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="35412" e_stop="35445"/>
            <exon e_start="35655" e_stop="36231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.894" e_score="0.750"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="35412" e_stop="35445" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="35446" i_stop="35654" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35655" e_stop="36231" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35412" stop="35445"/>
              <exon start="35655" stop="36231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35716" stop="36169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : GGTTTACCAACTTTTGGGAGAAGATGGCACTTACTATGGTGTACGATTTGGGAAGAATATCCCTTGGGTAACAGAGTTTCCTTTTGGAGTAATAAGAGATCCTCAGTATGTCGGCAGCATTTTGAGTTTGCTAGCTTGCCTCTCTTGGGTTCCTTTCTTGTATATTTTCTTATGGGTATTGGGATATGCATTTATGATACAAATTGAATCCAAGGAAGATCCAGCTACTCGTGCAAAGCCGCTTTCTTGAGTCTAGAGAAGATACATCTGCCAACTTGAAGGAACTAGTGCTGCTTGCTTCTGCATTCCAGAGATGGAATCCTCTTTAATAAAGTTCTTGCATCAATGGTTTCTTGAGTTCTTGATTCCTTTTTTAAAATCAGACTCAGCAATATTTTGGATGATTCTGTAAGTTTTTTTAGTTTTTCTAAATAGCCAGCATAGCTTTAGACCCTATGTCTTTTAGGATTTGAATAAAAAAATCCAGGCAATAAAGAGCAATTTTTTTTGTGTGAATGGTTGTTGAGAACACTTGTATGTTCTATTTTGACACAGAAAAACTGAATGATTTGTCAGC</gDNA_template>
            <first_frame> A  F  F  F  F  F  F  F  F  F  F   : W  F  T  N  F  W  E  K  M  A  L  T  M  V  Y  D  L  G  R  I  S  L  G  *  Q  S  F  L  L  E  *  *  E  I  L  S  M  S  A  A  F  *  V  C  *  L  A  S  L  G  F  L  S  C  I  F  S  Y  G  Y  W  D  M  H  L  *  Y  K  L  N  P  R  K  I  Q  L  L  V  Q  S  R  F  L  E  S  R  E  D  T  S  A  N  L  K  E  L  V  L  L  A  S  A  F  Q  R  W  N  P  L  *  *  S  S  C  I  N  G  F  L  S  S  *  F  L  F  *  N  Q  T  Q  Q  Y  F  G  *  F  C  K  F  F  *  F  F  *  I  A  S  I  A  L  D  P  M  S  F  R  I  *  I  K  K  S  R  Q  *  R  A  I  F  F  V  *  M  V  V  E  N  T  C  M  F  Y  F  D  T  E  K  L  N  D  L  S   </first_frame>
            <second_frame>  L  F  F  F  F  F  F  F  F  F  F  :  G  L  P  T  F  G  R  R  W  H  L  L  W  C  T  I  W  E  E  Y  P  L  G  N  R  V  S  F  W  S  N  K  R  S  S  V  C  R  Q  H  F  E  F  A  S  L  P  L  L  G  S  F  L  V  Y  F  L  M  G  I  G  I  C  I  Y  D  T  N  *  I  Q  G  R  S  S  Y  S  C  K  A  A  F  L  S  L  E  K  I  H  L  P  T  *  R  N  *  C  C  L  L  L  H  S  R  D  G  I  L  F  N  K  V  L  A  S  M  V  S  *  V  L  D  S  F  F  K  I  R  L  S  N  I  L  D  D  S  V  S  F  F  S  F  S  K  *  P  A  *  L  *  T  L  C  L  L  G  F  E  *  K  N  P  G  N  K  E  Q  F  F  L  C  E  W  L  L  R  T  L  V  C  S  I  L  T  Q  K  N  *  M  I  C  Q  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  L :   V  Y  Q  L  L  G  E  D  G  T  Y  Y  G  V  R  F  G  K  N  I  P  W  V  T  E  F  P  F  G  V  I  R  D  P  Q  Y  V  G  S  I  L  S  L  L  A  C  L  S  W  V  P  F  L  Y  I  F  L  W  V  L  G  Y  A  F  M  I  Q  I  E  S  K  E  D  P  A  T  R  A  K  P  L  S  *  V  *  R  R  Y  I  C  Q  L  E  G  T  S  A  A  C  F  C  I  P  E  M  E  S  S  L  I  K  F  L  H  Q  W  F  L  E  F  L  I  P  F  L  K  S  D  S  A  I  F  W  M  I  L  *  V  F  L  V  F  L  N  S  Q  H  S  F  R  P  Y  V  F  *  D  L  N  K  K  I  Q  A  I  K  S  N  F  F  C  V  N  G  C  *  E  H  L  Y  V  L  F  *  H  R  K  T  E  *  F  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35414" stop="35445"/>
                    <exon start="35655" stop="35904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFLVYQLLGEDGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWVPFLYIFLWVLGYAFMIQIESKEDPATRAKPLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35413" stop="35445"/>
                    <exon start="35655" stop="35861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFFFFFFFFFFGLPTFGRRWHLLWCTIWEEYPLGNRVSFWSNKRSSVCRQHFEFASLPLLGSFLVYFLMGIGICIYDTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="39019" PGL_stop="36981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39019" e_stop="38708"/>
            <exon e_start="38584" e_stop="38153"/>
            <exon e_start="38052" e_stop="37936"/>
            <exon e_start="37829" e_stop="36981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.949"/>
          <exon-intron don_prob="0.772" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="39019" e_stop="38708" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38707" i_stop="38585" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38584" e_stop="38153" e_length="432"/>
          </exon>
          <intron i_serial="2" don_prob="0.772" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38152" i_stop="38053" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38052" e_stop="37936" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="37935" i_stop="37830" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37829" e_stop="36981" e_length="849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39019" stop="38708"/>
              <exon start="38584" stop="38404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38708"/>
              <exon start="38584" stop="38247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38708"/>
              <exon start="38584" stop="38324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38708"/>
              <exon start="38584" stop="38334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38887" stop="38708"/>
              <exon start="38584" stop="38153"/>
              <exon start="38052" stop="37952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38885" stop="38708"/>
              <exon start="38584" stop="38217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38872" stop="38708"/>
              <exon start="38584" stop="38154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38868" stop="38708"/>
              <exon start="38584" stop="38228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38863" stop="38708"/>
              <exon start="38584" stop="38159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38554" stop="38153"/>
              <exon start="38052" stop="37936"/>
              <exon start="37829" stop="37542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38244" stop="38153"/>
              <exon start="38052" stop="37936"/>
              <exon start="37829" stop="37462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37988" stop="37936"/>
              <exon start="37829" stop="37142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37757" stop="37082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37684" stop="36995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37527" stop="37000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249559" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37378" stop="36981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263531" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTTAATATTTATCCCCCTTTTCCTTGATTTTCTTCCCACCTTCCTACAACTTGGTCAGCTGGTCTTCTAAAGCCCTTTGGTATTTATATACACCTTTTATTATCTTTATTTCTAATACCATCATCAGATTTTGAGGAGATAAAAAGAAAGTGTTTGTTTCTTTAACTTAAACACACCTGAAGAAAGACTACAACTTTGTTGATTCTTGGAATTTTCATACATCAAAGAAGATATTAATTACAATGGAATTTACCAGTTTGGTTGATACTTCATTGGATTTGAGCTTTAGGCCTCGTCAAAAAGTCCTG : AAACAAGAAGTGCAGAGTGATTTCACTGGATTGAGCATAGAAAGAGAGAATATGGTGGTGAAAAATGAGGCAGGGGATTTGTTAGAGGAACTAAACAGAGTGAGTAGTGAAAACAAGAAGTTAACAGAGATGCTTACTGTAGTTTGTGAAAATTACAATGCTTTAAGAAACCAAATGATGGAGTATATGAGCACACAAAATGGTGTAGCTGAAGATACTAGTGCAGGGTCAAGGAAAAGAAAAGCTGAAAGTATCTCTAATCCTGTTAACAACAACAACAATAATAATAACAATATGGATGTTGTTCATGGACGTTCATCAGAAAGCAGTTCGAGTGACGAAGAGTCCTGTTGCAAGAAACTCAGAGAGGAGCACATAAAAGCGAAAGTTACAATTGTTTCTATGAAGACTGATGCATCTGATACCTCTCTT : ATTGTAAAGGATGGTTATCAGTGGAGAAAGTATGGTCAGAAAGTAACTAGAGACAACCCTTGTCCAAGAGCTTACTTCAGATGCTCATTTGCACCTGGTTGCCCTGTCAAGAAAAAG : GTTCAGAGAAGCATTGAAGATCAGTCTATTGTGGTAGCAACATATGAAGGAGAACATAACCATCCACAAACCTCAAAACCAGAATCAGGTCCAAGTACTAATACTTCCACAGCCAGCCGATTAAATGTGACAACTATCGCGGGCACTACTACTTCAGTCCCTTGCTCTACCACTCTCAATTCCTCAGGACCAACCATTACTCTCGATCTTACTGCACCGAAAACAGTGGAAAAGCGCGATATGAAGATGAATCACAGTACTACTAGTCCTACCAGTGGCAATAGCATTAGAACAACAACAACAACATCAGCAGCAGGAGGTGAATATCAAAATAGGCCAGAGTTTCAACAGTTCTTGATAGAACAAATGGCTACTTCCTTGACCAAAGATCCAAGTTTCAAAGCAGCACTTGCTGCCGCCATATCAGGAAAAATCCTCCAACATAATAATCAGACAGGGAGATGGTAAACAAAAGTCCAGCAGAGCAGTCAACTACTTTGTATAGACAATTGTTCAATATTTTCCAACTTGACTCATATCAAAAGTTCTTAGGAGGAAAAAGGAAACACAAATTATTGTTCAAATGTAAATACAGGAAAAGTTAGTAACATTTGGACCGCAAAGTTGGACTCGGAGATGCACGTGAGAATGGGATCTTACTAGACTCTTAAGAAATTTTCAACAGCAGCCATACTGGGTCCCCTGCAGAATGGACTTGCTCTGAGTTGGCTAGATTGAGACTGAATTGTCCTAGAAGCATTTAAGTTGTTGAATTTGACAACTTTGTAGAATACTGAGATGAGATTATGAAATATACAACTTACTGTTCTGTTCACTGACTTTATACAA</gDNA_template>
            <first_frame> S  I  *  Y  L  S  P  F  S  L  I  F  F  P  P  S  Y  N  L  V  S  W  S  S  K  A  L  W  Y  L  Y  T  P  F  I  I  F  I  S  N  T  I  I  R  F  *  G  D  K  K  K  V  F  V  S  L  T  *  T  H  L  K  K  D  Y  N  F  V  D  S  W  N  F  H  T  S  K  K  I  L  I  T  M  E  F  T  S  L  V  D  T  S  L  D  L  S  F  R  P  R  Q  K  V  L  :  K  Q  E  V  Q  S  D  F  T  G  L  S  I  E  R  E  N  M  V  V  K  N  E  A  G  D  L  L  E  E  L  N  R  V  S  S  E  N  K  K  L  T  E  M  L  T  V  V  C  E  N  Y  N  A  L  R  N  Q  M  M  E  Y  M  S  T  Q  N  G  V  A  E  D  T  S  A  G  S  R  K  R  K  A  E  S  I  S  N  P  V  N  N  N  N  N  N  N  N  N  M  D  V  V  H  G  R  S  S  E  S  S  S  S  D  E  E  S  C  C  K  K  L  R  E  E  H  I  K  A  K  V  T  I  V  S  M  K  T  D  A  S  D  T  S  L  :  I  V  K  D  G  Y  Q  W  R  K  Y  G  Q  K  V  T  R  D  N  P  C  P  R  A  Y  F  R  C  S  F  A  P  G  C  P  V  K  K  K  :  V  Q  R  S  I  E  D  Q  S  I  V  V  A  T  Y  E  G  E  H  N  H  P  Q  T  S  K  P  E  S  G  P  S  T  N  T  S  T  A  S  R  L  N  V  T  T  I  A  G  T  T  T  S  V  P  C  S  T  T  L  N  S  S  G  P  T  I  T  L  D  L  T  A  P  K  T  V  E  K  R  D  M  K  M  N  H  S  T  T  S  P  T  S  G  N  S  I  R  T  T  T  T  T  S  A  A  G  G  E  Y  Q  N  R  P  E  F  Q  Q  F  L  I  E  Q  M  A  T  S  L  T  K  D  P  S  F  K  A  A  L  A  A  A  I  S  G  K  I  L  Q  H  N  N  Q  T  G  R  W  *  T  K  V  Q  Q  S  S  Q  L  L  C  I  D  N  C  S  I  F  S  N  L  T  H  I  K  S  S  *  E  E  K  G  N  T  N  Y  C  S  N  V  N  T  G  K  V  S  N  I  W  T  A  K  L  D  S  E  M  H  V  R  M  G  S  Y  *  T  L  K  K  F  S  T  A  A  I  L  G  P  L  Q  N  G  L  A  L  S  W  L  D  *  D  *  I  V  L  E  A  F  K  L  L  N  L  T  T  L  *  N  T  E  M  R  L  *  N  I  Q  L  T  V  L  F  T  D  F  I  Q </first_frame>
            <second_frame>  Q  F  N  I  Y  P  P  F  P  *  F  S  S  H  L  P  T  T  W  S  A  G  L  L  K  P  F  G  I  Y  I  H  L  L  L  S  L  F  L  I  P  S  S  D  F  E  E  I  K  R  K  C  L  F  L  *  L  K  H  T  *  R  K  T  T  T  L  L  I  L  G  I  F  I  H  Q  R  R  Y  *  L  Q  W  N  L  P  V  W  L  I  L  H  W  I  *  A  L  G  L  V  K  K  S  * :   N  K  K  C  R  V  I  S  L  D  *  A  *  K  E  R  I  W  W  *  K  M  R  Q  G  I  C  *  R  N  *  T  E  *  V  V  K  T  R  S  *  Q  R  C  L  L  *  F  V  K  I  T  M  L  *  E  T  K  *  W  S  I  *  A  H  K  M  V  *  L  K  I  L  V  Q  G  Q  G  K  E  K  L  K  V  S  L  I  L  L  T  T  T  T  I  I  I  T  I  W  M  L  F  M  D  V  H  Q  K  A  V  R  V  T  K  S  P  V  A  R  N  S  E  R  S  T  *  K  R  K  L  Q  L  F  L  *  R  L  M  H  L  I  P  L  L :   L  *  R  M  V  I  S  G  E  S  M  V  R  K  *  L  E  T  T  L  V  Q  E  L  T  S  D  A  H  L  H  L  V  A  L  S  R  K  R :   F  R  E  A  L  K  I  S  L  L  W  *  Q  H  M  K  E  N  I  T  I  H  K  P  Q  N  Q  N  Q  V  Q  V  L  I  L  P  Q  P  A  D  *  M  *  Q  L  S  R  A  L  L  L  Q  S  L  A  L  P  L  S  I  P  Q  D  Q  P  L  L  S  I  L  L  H  R  K  Q  W  K  S  A  I  *  R  *  I  T  V  L  L  V  L  P  V  A  I  A  L  E  Q  Q  Q  Q  H  Q  Q  Q  E  V  N  I  K  I  G  Q  S  F  N  S  S  *  *  N  K  W  L  L  P  *  P  K  I  Q  V  S  K  Q  H  L  L  P  P  Y  Q  E  K  S  S  N  I  I  I  R  Q  G  D  G  K  Q  K  S  S  R  A  V  N  Y  F  V  *  T  I  V  Q  Y  F  P  T  *  L  I  S  K  V  L  R  R  K  K  E  T  Q  I  I  V  Q  M  *  I  Q  E  K  L  V  T  F  G  P  Q  S  W  T  R  R  C  T  *  E  W  D  L  T  R  L  L  R  N  F  Q  Q  Q  P  Y  W  V  P  C  R  M  D  L  L  *  V  G  *  I  E  T  E  L  S  *  K  H  L  S  C  *  I  *  Q  L  C  R  I  L  R  *  D  Y  E  I  Y  N  L  L  F  C  S  L  T  L  Y   </second_frame>
            <third_frame>   N  L  I  F  I  P  L  F  L  D  F  L  P  T  F  L  Q  L  G  Q  L  V  F  *  S  P  L  V  F  I  Y  T  F  Y  Y  L  Y  F  *  Y  H  H  Q  I  L  R  R  *  K  E  S  V  C  F  F  N  L  N  T  P  E  E  R  L  Q  L  C  *  F  L  E  F  S  Y  I  K  E  D  I  N  Y  N  G  I  Y  Q  F  G  *  Y  F  I  G  F  E  L  *  A  S  S  K  S  P   : E  T  R  S  A  E  *  F  H  W  I  E  H  R  K  R  E  Y  G  G  E  K  *  G  R  G  F  V  R  G  T  K  Q  S  E  *  *  K  Q  E  V  N  R  D  A  Y  C  S  L  *  K  L  Q  C  F  K  K  P  N  D  G  V  Y  E  H  T  K  W  C  S  *  R  Y  *  C  R  V  K  E  K  K  S  *  K  Y  L  *  S  C  *  Q  Q  Q  Q  *  *  *  Q  Y  G  C  C  S  W  T  F  I  R  K  Q  F  E  *  R  R  V  L  L  Q  E  T  Q  R  G  A  H  K  S  E  S  Y  N  C  F  Y  E  D  *  C  I  *  Y  L  S   : Y  C  K  G  W  L  S  V  E  K  V  W  S  E  S  N  *  R  Q  P  L  S  K  S  L  L  Q  M  L  I  C  T  W  L  P  C  Q  E  K   : G  S  E  K  H  *  R  S  V  Y  C  G  S  N  I  *  R  R  T  *  P  S  T  N  L  K  T  R  I  R  S  K  Y  *  Y  F  H  S  Q  P  I  K  C  D  N  Y  R  G  H  Y  Y  F  S  P  L  L  Y  H  S  Q  F  L  R  T  N  H  Y  S  R  S  Y  C  T  E  N  S  G  K  A  R  Y  E  D  E  S  Q  Y  Y  *  S  Y  Q  W  Q  *  H  *  N  N  N  N  N  I  S  S  R  R  *  I  S  K  *  A  R  V  S  T  V  L  D  R  T  N  G  Y  F  L  D  Q  R  S  K  F  Q  S  S  T  C  C  R  H  I  R  K  N  P  P  T  *  *  S  D  R  E  M  V  N  K  S  P  A  E  Q  S  T  T  L  Y  R  Q  L  F  N  I  F  Q  L  D  S  Y  Q  K  F  L  G  G  K  R  K  H  K  L  L  F  K  C  K  Y  R  K  S  *  *  H  L  D  R  K  V  G  L  G  D  A  R  E  N  G  I  L  L  D  S  *  E  I  F  N  S  S  H  T  G  S  P  A  E  W  T  C  S  E  L  A  R  L  R  L  N  C  P  R  S  I  *  V  V  E  F  D  N  F  V  E  Y  *  D  E  I  M  K  Y  T  T  Y  C  S  V  H  *  L  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38845" stop="38708"/>
                    <exon start="38584" stop="38153"/>
                    <exon start="38052" stop="37936"/>
                    <exon start="37829" stop="37362"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THLKKDYNFVDSWNFHTSKKILITMEFTSLVDTSLDLSFRPRQKVLKQEVQSDFTGLSIERENMVVKNEAGDLLEELNRVSSENKKLTEMLTVVCENYNALRNQMMEYMSTQNGVAEDTSAGSRKRKAESISNPVNNNNNNNNNMDVVHGRSSESSSSDEESCCKKLREEHIKAKVTIVSMKTDASDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFRCSFAPGCPVKKKVQRSIEDQSIVVATYEGEHNHPQTSKPESGPSTNTSTASRLNVTTIAGTTTSVPCSTTLNSSGPTITLDLTAPKTVEKRDMKMNHSTTSPTSGNSIRTTTTTSAAGGEYQNRPEFQQFLIEQMATSLTKDPSFKAALAAAISGKILQHNNQTGRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="45139" PGL_stop="44979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45139" e_stop="44979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45139" e_stop="44979" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45139" stop="44979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATGTGTTTAATGGGGGAGTTTTATGGTTACGCAATTTTGACGTGCTTAAGTTCCATATATCTGAATATTTTGTGCATACTTTTTGACTTACGAGACATTCAAATATCTAGCTCAAGAAACGAGTACACTTCAAACTGTATTTTTAAAAAAGAATAAAC</gDNA_template>
            <first_frame> L  M  C  L  M  G  E  F  Y  G  Y  A  I  L  T  C  L  S  S  I  Y  L  N  I  L  C  I  L  F  D  L  R  D  I  Q  I  S  S  S  R  N  E  Y  T  S  N  C  I  F  K  K  E  *   </first_frame>
            <second_frame>  *  C  V  *  W  G  S  F  M  V  T  Q  F  *  R  A  *  V  P  Y  I  *  I  F  C  A  Y  F  L  T  Y  E  T  F  K  Y  L  A  Q  E  T  S  T  L  Q  T  V  F  L  K  K  N  K  </second_frame>
            <third_frame>   N  V  F  N  G  G  V  L  W  L  R  N  F  D  V  L  K  F  H  I  S  E  Y  F  V  H  T  F  *  L  T  R  H  S  N  I  *  L  K  K  R  V  H  F  K  L  Y  F  *  K  R  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066A20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76595" PGL_stop="80478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76595" e_stop="76891"/>
            <exon e_start="77428" e_stop="77676"/>
            <exon e_start="77763" e_stop="77936"/>
            <exon e_start="78074" e_stop="78180"/>
            <exon e_start="79863" e_stop="80478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.036" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76595" e_stop="76891" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.036">
            <gDNA_intron_boundary i_start="76892" i_stop="77427" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77428" e_stop="77676" e_length="249"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77763" e_stop="77936" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77937" i_stop="78073" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78074" e_stop="78180" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78181" i_stop="79862" i_length="1682"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="79863" e_stop="80478" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76595" stop="76891"/>
              <exon start="77428" stop="77676"/>
              <exon start="77763" stop="77936"/>
              <exon start="78074" stop="78133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76596" stop="76891"/>
              <exon start="77428" stop="77676"/>
              <exon start="77763" stop="77841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77783" stop="77936"/>
              <exon start="78074" stop="78180"/>
              <exon start="79863" stop="80400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79958" stop="80371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80001" stop="80478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA : CAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG : TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG : CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG : GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</gDNA_template>
            <first_frame> P  K  H  K  L  L  S  L  S  S  H  K  R  D  F  H  W  N  F  P  T  L  L  S  T  A  L  I  F  L  V  F  V  L  L  T  Q  S  E  T  L  F  C  R  F  L  M  H  P  S  R  N  Y  T  G  E  A  P  S  E  L  R  W  Q  R  G  K  M  L  P  V  K  R  E  V  D  L  E  N  F  S  D  E  E  R  C  K  L  D  K  R  F  K  L  S  S  S  L  Q  :  Q  Q  L  G  E  G  A  C  N  F  T  V  S  S  S  F  M  S  V  D  E  P  S  P  L  G  L  R  L  R  K  T  P  S  L  L  D  M  F  Q  T  M  L  G  G  T  S  M  V  E  S  L  G  K  K  E  Q  K  R  S  T  A  M  I  E  K  L  K  A  S  N  F  P  G  S  V  L  R  I  G  T  W  E  :  Y  K  S  R  Y  E  G  D  L  V  A  K  C  Y  F  A  K  H  K  L  V  W  E  V  L  D  G  G  L  K  N  K  I  E  I  Q  W  S  D  I  I  G  L  K  A  N  Y  P  D  D  A  P  G  T  L  D  I  V  :  L  A  R  Q  P  L  F  F  R  E  T  D  P  Q  P  R  K  H  T  L  W  Q  A  T  S  D  F  T  D  G  Q  A  S  I  H  R :   R  H  Y  L  E  C  P  H  G  L  L  G  K  H  I  E  K  L  V  Q  C  D  P  R  L  N  F  L  S  Q  Q  A  E  M  T  L  D  S  P  Y  F  E  S  Q  M  S  G  F  E  D  T  H  E  R  D  R  E  F  D  L  N  N  E  G  S  P  N  F  I  D  Y  T  S  P  S  G  A  Q  C  S  S  K  S  K  Q  D  P  R  P  L  E  C  I  H  Q  E  K  P  S  P  R  S  G  N  Y  V  F  Y  L  R  S  A  F  K  F  S  *  I  E  L  Y  G  E  Y  V  F  E  D  V  D  D  H  P  L  S  P  T  F  L  K  K  R  Q  I  D  R  H  F  L  F  K  E  W  R  G  S  S  L  P  I  P  L  I  L  L  *  S  C  L  G  V  T  V  V  C  F  L  N  M  I  H  I  E  G  V  V  S  V  Q  K  E  E  Y  D  R  N  A  E  L  G  Y  G  H  V  I </first_frame>
            <second_frame>  Q  N  T  N  C  F  L  F  H  L  I  S  V  T  F  T  G  I  F  Q  L  Y  S  A  R  L  *  Y  F  W  Y  L  S  Y  S  L  N  L  K  L  F  F  V  V  F  S  C  I  P  R  G  I  T  P  A  K  R  R  R  S  C  G  G  R  G  G  K  C  C  R  *  R  G  R  *  T  L  K  T  F  P  M  K  N  A  A  N  S  T  S  D  S  S  F  P  L  L  C  N :   S  N  W  V  K  E  L  V  I  L  L  F  H  H  R  S  C  R  *  M  N  P  V  H  *  V  C  G  *  E  R  P  H  H  C  W  I  C  S  K  R  C  L  G  A  P  P  W  W  K  V  L  E  R  R  S  R  K  E  A  L  Q  *  *  K  S  S  R  P  R  I  F  L  V  Q  F  *  E  L  E  P  G  S :   I  S  R  D  M  K  E  I  W  L  Q  N  V  T  L  P  S  I  N  L  Y  G  K  S  L  M  V  V  S  R  I  R  *  R  S  S  G  L  I  L  *  G  *  R  Q  I  T  Q  M  M  H  Q  E  P  W  I  *  C :   W  Q  G  N  L  F  S  L  G  R  Q  I  H  N  P  E  S  T  H  F  G  K  L  L  Q  I  L  L  T  D  R  L  V  Y  T   : G  D  I  T  *  S  V  R  M  D  C  W  E  S  I  L  K  S  L  C  N  V  I  L  V  S  T  F  *  V  N  K  Q  R  *  L  *  I  L  L  I  L  N  P  R  C  Q  V  L  K  T  H  M  K  G  T  V  N  L  I  *  I  M  K  G  V  R  I  L  L  T  I  L  H  L  L  E  L  S  V  P  P  K  V  S  K  I  L  D  L  W  N  V  F  T  K  K  S  H  P  Q  D  Q  V  I  M  Y  F  I  *  E  V  H  L  S  F  L  E  L  S  C  M  V  S  M  S  L  K  M  S  M  I  I  P  Y  P  P  P  F  *  K  K  D  K  L  I  V  I  F  F  S  K  S  G  E  E  V  R  Y  P  F  P  *  F  Y  C  S  H  V  L  V  L  Q  L  C  V  S  *  T  *  S  T  L  R  G  L  S  L  F  K  K  R  N  M  T  V  M  Q  N  W  V  M  D  M  L   </second_frame>
            <third_frame>   K  T  Q  I  A  F  S  F  I  S  *  A  *  L  S  L  E  F  S  N  S  T  Q  H  G  S  D  I  F  G  I  C  L  T  H  S  I  *  N  S  F  L  S  F  S  H  A  S  L  E  E  L  H  R  R  S  A  V  G  V  A  V  A  E  G  E  N  V  A  G  E  E  G  G  R  P  *  K  L  F  R  *  R  T  L  Q  T  R  Q  A  I  Q  A  F  L  F  S  A   : T  A  T  G  *  R  S  L  *  F  Y  C  F  I  I  V  H  V  G  R  *  T  Q  S  I  R  F  A  A  K  K  D  P  I  T  V  G  Y  V  P  N  D  A  W  G  H  L  H  G  G  K  S  W  K  E  G  A  E  K  K  H  C  N  D  R  K  A  Q  G  L  E  F  S  W  F  S  S  E  N  W  N  L  G   : V  *  V  E  I  *  R  R  F  G  C  K  M  L  L  C  Q  A  *  T  C  M  G  S  P  *  W  W  S  Q  E  *  D  R  D  P  V  V  *  Y  Y  R  V  E  G  K  L  P  R  *  C  T  R  N  L  G  Y  S   : A  G  K  A  T  S  F  L  *  G  D  R  S  T  T  Q  K  A  H  T  L  A  S  Y  F  R  F  Y  *  R  T  G  *  Y  T  Q  :  A  T  L  L  R  V  S  A  W  I  V  G  K  A  Y  *  K  A  C  A  M  *  S  S  S  Q  L  S  E  S  T  S  R  D  D  S  R  F  S  L  F  *  I  P  D  V  R  F  *  R  H  T  *  K  G  P  *  I  *  S  E  *  *  R  E  S  E  F  Y  *  L  Y  F  T  F  W  S  S  V  F  L  Q  K  *  A  R  S  *  T  F  G  M  Y  S  P  R  K  A  I  P  K  I  R  *  L  C  I  L  S  E  K  C  I  *  V  F  L  N  *  V  V  W  *  V  C  L  *  R  C  R  *  S  S  L  I  P  H  L  F  E  K  K  T  N  *  S  S  F  S  F  Q  R  V  E  R  K  F  A  T  H  S  L  D  F  I  V  V  M  S  W  C  Y  S  C  V  F  L  E  H  D  P  H  *  G  G  C  L  C  S  K  R  G  I  *  P  *  C  R  I  G  L  W  T  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76595" stop="76891"/>
                    <exon start="77428" stop="77676"/>
                    <exon start="77763" stop="77936"/>
                    <exon start="78074" stop="78180"/>
                    <exon start="79863" stop="80214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKHKLLSLSSHKRDFHWNFPTLLSTALIFLVFVLLTQSETLFCRFLMHPSRNYTGEAPSELRWQRGKMLPVKREVDLENFSDEERCKLDKRFKLSSSLQQQLGEGACNFTVSSSFMSVDEPSPLGLRLRKTPSLLDMFQTMLGGTSMVESLGKKEQKRSTAMIEKLKASNFPGSVLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIIGLKANYPDDAPGTLDIVLARQPLFFRETDPQPRKHTLWQATSDFTDGQASIHRRHYLECPHGLLGKHIEKLVQCDPRLNFLSQQAEMTLDSPYFESQMSGFEDTHERDREFDLNNEGSPNFIDYTSPSGAQCSSKSKQDPRPLECIHQEKPSPRSGNYVFYLRSAFKFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76813" e_stop="76887"/>
            <exon e_start="77428" e_stop="77676"/>
            <exon e_start="77763" e_stop="77936"/>
            <exon e_start="78074" e_stop="78180"/>
            <exon e_start="79863" e_stop="80478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.036" e_score="0.973"/>
          <exon-intron don_prob="0.997" acc_prob="0.917" e_score="0.996"/>
          <exon-intron don_prob="0.981" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="76813" e_stop="76887" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.036">
            <gDNA_intron_boundary i_start="76888" i_stop="77427" i_length="540"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="77428" e_stop="77676" e_length="249"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77763" e_stop="77936" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77937" i_stop="78073" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78074" e_stop="78180" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78181" i_stop="79862" i_length="1682"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="79863" e_stop="80478" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76813" stop="76887"/>
              <exon start="77428" stop="77676"/>
              <exon start="77763" stop="77850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77783" stop="77936"/>
              <exon start="78074" stop="78180"/>
              <exon start="79863" stop="80400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79958" stop="80371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80001" stop="80478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCT : CAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG : TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG : CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG : GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</gDNA_template>
            <first_frame> G  G  R  P  *  K  L  F  R  *  R  T  L  Q  T  R  Q  A  I  Q  A  F  L  F  S  :  Q  Q  L  G  E  G  A  C  N  F  T  V  S  S  S  F  M  S  V  D  E  P  S  P  L  G  L  R  L  R  K  T  P  S  L  L  D  M  F  Q  T  M  L  G  G  T  S  M  V  E  S  L  G  K  K  E  Q  K  R  S  T  A  M  I  E  K  L  K  A  S  N  F  P  G  S  V  L  R  I  G  T  W  E  :  Y  K  S  R  Y  E  G  D  L  V  A  K  C  Y  F  A  K  H  K  L  V  W  E  V  L  D  G  G  L  K  N  K  I  E  I  Q  W  S  D  I  I  G  L  K  A  N  Y  P  D  D  A  P  G  T  L  D  I  V  :  L  A  R  Q  P  L  F  F  R  E  T  D  P  Q  P  R  K  H  T  L  W  Q  A  T  S  D  F  T  D  G  Q  A  S  I  H  R :   R  H  Y  L  E  C  P  H  G  L  L  G  K  H  I  E  K  L  V  Q  C  D  P  R  L  N  F  L  S  Q  Q  A  E  M  T  L  D  S  P  Y  F  E  S  Q  M  S  G  F  E  D  T  H  E  R  D  R  E  F  D  L  N  N  E  G  S  P  N  F  I  D  Y  T  S  P  S  G  A  Q  C  S  S  K  S  K  Q  D  P  R  P  L  E  C  I  H  Q  E  K  P  S  P  R  S  G  N  Y  V  F  Y  L  R  S  A  F  K  F  S  *  I  E  L  Y  G  E  Y  V  F  E  D  V  D  D  H  P  L  S  P  T  F  L  K  K  R  Q  I  D  R  H  F  L  F  K  E  W  R  G  S  S  L  P  I  P  L  I  L  L  *  S  C  L  G  V  T  V  V  C  F  L  N  M  I  H  I  E  G  V  V  S  V  Q  K  E  E  Y  D  R  N  A  E  L  G  Y  G  H  V  I </first_frame>
            <second_frame>  E  V  D  L  E  N  F  S  D  E  E  R  C  K  L  D  K  R  F  K  L  S  S  S  L :   S  N  W  V  K  E  L  V  I  L  L  F  H  H  R  S  C  R  *  M  N  P  V  H  *  V  C  G  *  E  R  P  H  H  C  W  I  C  S  K  R  C  L  G  A  P  P  W  W  K  V  L  E  R  R  S  R  K  E  A  L  Q  *  *  K  S  S  R  P  R  I  F  L  V  Q  F  *  E  L  E  P  G  S :   I  S  R  D  M  K  E  I  W  L  Q  N  V  T  L  P  S  I  N  L  Y  G  K  S  L  M  V  V  S  R  I  R  *  R  S  S  G  L  I  L  *  G  *  R  Q  I  T  Q  M  M  H  Q  E  P  W  I  *  C :   W  Q  G  N  L  F  S  L  G  R  Q  I  H  N  P  E  S  T  H  F  G  K  L  L  Q  I  L  L  T  D  R  L  V  Y  T   : G  D  I  T  *  S  V  R  M  D  C  W  E  S  I  L  K  S  L  C  N  V  I  L  V  S  T  F  *  V  N  K  Q  R  *  L  *  I  L  L  I  L  N  P  R  C  Q  V  L  K  T  H  M  K  G  T  V  N  L  I  *  I  M  K  G  V  R  I  L  L  T  I  L  H  L  L  E  L  S  V  P  P  K  V  S  K  I  L  D  L  W  N  V  F  T  K  K  S  H  P  Q  D  Q  V  I  M  Y  F  I  *  E  V  H  L  S  F  L  E  L  S  C  M  V  S  M  S  L  K  M  S  M  I  I  P  Y  P  P  P  F  *  K  K  D  K  L  I  V  I  F  F  S  K  S  G  E  E  V  R  Y  P  F  P  *  F  Y  C  S  H  V  L  V  L  Q  L  C  V  S  *  T  *  S  T  L  R  G  L  S  L  F  K  K  R  N  M  T  V  M  Q  N  W  V  M  D  M  L   </second_frame>
            <third_frame>   R  *  T  L  K  T  F  P  M  K  N  A  A  N  S  T  S  D  S  S  F  P  L  L   : S  A  T  G  *  R  S  L  *  F  Y  C  F  I  I  V  H  V  G  R  *  T  Q  S  I  R  F  A  A  K  K  D  P  I  T  V  G  Y  V  P  N  D  A  W  G  H  L  H  G  G  K  S  W  K  E  G  A  E  K  K  H  C  N  D  R  K  A  Q  G  L  E  F  S  W  F  S  S  E  N  W  N  L  G   : V  *  V  E  I  *  R  R  F  G  C  K  M  L  L  C  Q  A  *  T  C  M  G  S  P  *  W  W  S  Q  E  *  D  R  D  P  V  V  *  Y  Y  R  V  E  G  K  L  P  R  *  C  T  R  N  L  G  Y  S   : A  G  K  A  T  S  F  L  *  G  D  R  S  T  T  Q  K  A  H  T  L  A  S  Y  F  R  F  Y  *  R  T  G  *  Y  T  Q  :  A  T  L  L  R  V  S  A  W  I  V  G  K  A  Y  *  K  A  C  A  M  *  S  S  S  Q  L  S  E  S  T  S  R  D  D  S  R  F  S  L  F  *  I  P  D  V  R  F  *  R  H  T  *  K  G  P  *  I  *  S  E  *  *  R  E  S  E  F  Y  *  L  Y  F  T  F  W  S  S  V  F  L  Q  K  *  A  R  S  *  T  F  G  M  Y  S  P  R  K  A  I  P  K  I  R  *  L  C  I  L  S  E  K  C  I  *  V  F  L  N  *  V  V  W  *  V  C  L  *  R  C  R  *  S  S  L  I  P  H  L  F  E  K  K  T  N  *  S  S  F  S  F  Q  R  V  E  R  K  F  A  T  H  S  L  D  F  I  V  V  M  S  W  C  Y  S  C  V  F  L  E  H  D  P  H  *  G  G  C  L  C  S  K  R  G  I  *  P  *  C  R  I  G  L  W  T  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76843" stop="76887"/>
                    <exon start="77428" stop="77676"/>
                    <exon start="77763" stop="77936"/>
                    <exon start="78074" stop="78180"/>
                    <exon start="79863" stop="80214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTLQTRQAIQAFLFSQQLGEGACNFTVSSSFMSVDEPSPLGLRLRKTPSLLDMFQTMLGGTSMVESLGKKEQKRSTAMIEKLKASNFPGSVLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIIGLKANYPDDAPGTLDIVLARQPLFFRETDPQPRKHTLWQATSDFTDGQASIHRRHYLECPHGLLGKHIEKLVQCDPRLNFLSQQAEMTLDSPYFESQMSGFEDTHERDREFDLNNEGSPNFIDYTSPSGAQCSSKSKQDPRPLECIHQEKPSPRSGNYVFYLRSAFKFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76694" e_stop="76891"/>
            <exon e_start="77431" e_stop="77676"/>
            <exon e_start="77763" e_stop="77936"/>
            <exon e_start="78074" e_stop="78180"/>
            <exon e_start="79863" e_stop="80478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76694" e_stop="76891" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76892" i_stop="77430" i_length="539"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77431" e_stop="77676" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.917">
            <gDNA_intron_boundary i_start="77677" i_stop="77762" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77763" e_stop="77936" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77937" i_stop="78073" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78074" e_stop="78180" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78181" i_stop="79862" i_length="1682"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="79863" e_stop="80478" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76694" stop="76891"/>
              <exon start="77431" stop="77676"/>
              <exon start="77763" stop="77936"/>
              <exon start="78074" stop="78180"/>
              <exon start="79863" stop="79920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77783" stop="77936"/>
              <exon start="78074" stop="78180"/>
              <exon start="79863" stop="80400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79958" stop="80371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80001" stop="80478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA : CAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG : TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG : CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG : GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</gDNA_template>
            <first_frame> L  L  T  Q  S  E  T  L  F  C  R  F  L  M  H  P  S  R  N  Y  T  G  E  A  P  S  E  L  R  W  Q  R  G  K  M  L  P  V  K  R  E  V  D  L  E  N  F  S  D  E  E  R  C  K  L  D  K  R  F  K  L  S  S  S  L  Q  :  Q  L  G  E  G  A  C  N  F  T  V  S  S  S  F  M  S  V  D  E  P  S  P  L  G  L  R  L  R  K  T  P  S  L  L  D  M  F  Q  T  M  L  G  G  T  S  M  V  E  S  L  G  K  K  E  Q  K  R  S  T  A  M  I  E  K  L  K  A  S  N  F  P  G  S  V  L  R  I  G  T  W  E  :  Y  K  S  R  Y  E  G  D  L  V  A  K  C  Y  F  A  K  H  K  L  V  W  E  V  L  D  G  G  L  K  N  K  I  E  I  Q  W  S  D  I  I  G  L  K  A  N  Y  P  D  D  A  P  G  T  L  D  I  V  :  L  A  R  Q  P  L  F  F  R  E  T  D  P  Q  P  R  K  H  T  L  W  Q  A  T  S  D  F  T  D  G  Q  A  S  I  H  R :   R  H  Y  L  E  C  P  H  G  L  L  G  K  H  I  E  K  L  V  Q  C  D  P  R  L  N  F  L  S  Q  Q  A  E  M  T  L  D  S  P  Y  F  E  S  Q  M  S  G  F  E  D  T  H  E  R  D  R  E  F  D  L  N  N  E  G  S  P  N  F  I  D  Y  T  S  P  S  G  A  Q  C  S  S  K  S  K  Q  D  P  R  P  L  E  C  I  H  Q  E  K  P  S  P  R  S  G  N  Y  V  F  Y  L  R  S  A  F  K  F  S  *  I  E  L  Y  G  E  Y  V  F  E  D  V  D  D  H  P  L  S  P  T  F  L  K  K  R  Q  I  D  R  H  F  L  F  K  E  W  R  G  S  S  L  P  I  P  L  I  L  L  *  S  C  L  G  V  T  V  V  C  F  L  N  M  I  H  I  E  G  V  V  S  V  Q  K  E  E  Y  D  R  N  A  E  L  G  Y  G  H  V  I </first_frame>
            <second_frame>  Y  S  L  N  L  K  L  F  F  V  V  F  S  C  I  P  R  G  I  T  P  A  K  R  R  R  S  C  G  G  R  G  G  K  C  C  R  *  R  G  R  *  T  L  K  T  F  P  M  K  N  A  A  N  S  T  S  D  S  S  F  P  L  L  C  N :   N  W  V  K  E  L  V  I  L  L  F  H  H  R  S  C  R  *  M  N  P  V  H  *  V  C  G  *  E  R  P  H  H  C  W  I  C  S  K  R  C  L  G  A  P  P  W  W  K  V  L  E  R  R  S  R  K  E  A  L  Q  *  *  K  S  S  R  P  R  I  F  L  V  Q  F  *  E  L  E  P  G  S :   I  S  R  D  M  K  E  I  W  L  Q  N  V  T  L  P  S  I  N  L  Y  G  K  S  L  M  V  V  S  R  I  R  *  R  S  S  G  L  I  L  *  G  *  R  Q  I  T  Q  M  M  H  Q  E  P  W  I  *  C :   W  Q  G  N  L  F  S  L  G  R  Q  I  H  N  P  E  S  T  H  F  G  K  L  L  Q  I  L  L  T  D  R  L  V  Y  T   : G  D  I  T  *  S  V  R  M  D  C  W  E  S  I  L  K  S  L  C  N  V  I  L  V  S  T  F  *  V  N  K  Q  R  *  L  *  I  L  L  I  L  N  P  R  C  Q  V  L  K  T  H  M  K  G  T  V  N  L  I  *  I  M  K  G  V  R  I  L  L  T  I  L  H  L  L  E  L  S  V  P  P  K  V  S  K  I  L  D  L  W  N  V  F  T  K  K  S  H  P  Q  D  Q  V  I  M  Y  F  I  *  E  V  H  L  S  F  L  E  L  S  C  M  V  S  M  S  L  K  M  S  M  I  I  P  Y  P  P  P  F  *  K  K  D  K  L  I  V  I  F  F  S  K  S  G  E  E  V  R  Y  P  F  P  *  F  Y  C  S  H  V  L  V  L  Q  L  C  V  S  *  T  *  S  T  L  R  G  L  S  L  F  K  K  R  N  M  T  V  M  Q  N  W  V  M  D  M  L   </second_frame>
            <third_frame>   T  H  S  I  *  N  S  F  L  S  F  S  H  A  S  L  E  E  L  H  R  R  S  A  V  G  V  A  V  A  E  G  E  N  V  A  G  E  E  G  G  R  P  *  K  L  F  R  *  R  T  L  Q  T  R  Q  A  I  Q  A  F  L  F  S  A   : T  T  G  *  R  S  L  *  F  Y  C  F  I  I  V  H  V  G  R  *  T  Q  S  I  R  F  A  A  K  K  D  P  I  T  V  G  Y  V  P  N  D  A  W  G  H  L  H  G  G  K  S  W  K  E  G  A  E  K  K  H  C  N  D  R  K  A  Q  G  L  E  F  S  W  F  S  S  E  N  W  N  L  G   : V  *  V  E  I  *  R  R  F  G  C  K  M  L  L  C  Q  A  *  T  C  M  G  S  P  *  W  W  S  Q  E  *  D  R  D  P  V  V  *  Y  Y  R  V  E  G  K  L  P  R  *  C  T  R  N  L  G  Y  S   : A  G  K  A  T  S  F  L  *  G  D  R  S  T  T  Q  K  A  H  T  L  A  S  Y  F  R  F  Y  *  R  T  G  *  Y  T  Q  :  A  T  L  L  R  V  S  A  W  I  V  G  K  A  Y  *  K  A  C  A  M  *  S  S  S  Q  L  S  E  S  T  S  R  D  D  S  R  F  S  L  F  *  I  P  D  V  R  F  *  R  H  T  *  K  G  P  *  I  *  S  E  *  *  R  E  S  E  F  Y  *  L  Y  F  T  F  W  S  S  V  F  L  Q  K  *  A  R  S  *  T  F  G  M  Y  S  P  R  K  A  I  P  K  I  R  *  L  C  I  L  S  E  K  C  I  *  V  F  L  N  *  V  V  W  *  V  C  L  *  R  C  R  *  S  S  L  I  P  H  L  F  E  K  K  T  N  *  S  S  F  S  F  Q  R  V  E  R  K  F  A  T  H  S  L  D  F  I  V  V  M  S  W  C  Y  S  C  V  F  L  E  H  D  P  H  *  G  G  C  L  C  S  K  R  G  I  *  P  *  C  R  I  G  L  W  T  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76694" stop="76891"/>
                    <exon start="77431" stop="77676"/>
                    <exon start="77763" stop="77936"/>
                    <exon start="78074" stop="78180"/>
                    <exon start="79863" stop="80214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTQSETLFCRFLMHPSRNYTGEAPSELRWQRGKMLPVKREVDLENFSDEERCKLDKRFKLSSSLQQLGEGACNFTVSSSFMSVDEPSPLGLRLRKTPSLLDMFQTMLGGTSMVESLGKKEQKRSTAMIEKLKASNFPGSVLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIIGLKANYPDDAPGTLDIVLARQPLFFRETDPQPRKHTLWQATSDFTDGQASIHRRHYLECPHGLLGKHIEKLVQCDPRLNFLSQQAEMTLDSPYFESQMSGFEDTHERDREFDLNNEGSPNFIDYTSPSGAQCSSKSKQDPRPLECIHQEKPSPRSGNYVFYLRSAFKFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80951" PGL_stop="81374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80951" e_stop="81374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="80951" e_stop="81374" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80951" stop="81370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81026" stop="81374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATCCTGCAACAGTTCAAGCGAGTGAGAACTGTGGTGATGTGTCGGATGAAAGAAGAGTTAATGAAATAAATTTCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTCATGG</gDNA_template>
            <first_frame> R  I  L  Q  Q  F  K  R  V  R  T  V  V  M  C  R  M  K  E  E  L  M  K  *  I  S  F  P  P  H  R  L  E  E  K  M  K  K  I  L  L  C  Q  R  M  N  Q  L  I  S  L  V  A  S  R  L  Q  Q  C  Q  G  R  T  L  L  V  I  C  C  *  I  F  L  G  *  H  H  C  P  T  F  C  S  Y  A  M  I  L  Q  V  T  R  L  D  S  L  S  S  S  L  H  Q  V  T  I  A  K  D  G  C  S  S  L  V  Y  I  E  K  L  C  *  Q  Q  Y  C  P  V  *  D  L  K  L  *  C  I  I  I  E  L  F  M  </first_frame>
            <second_frame>  G  S  C  N  S  S  S  E  *  E  L  W  *  C  V  G  *  K  K  S  *  *  N  K  F  H  S  H  R  T  A  W  K  K  R  *  R  R  F  F  Y  A  R  G  *  I  S  *  S  L  *  L  Q  A  D  F  N  N  V  K  E  G  L  C  W  *  S  V  A  E  S  S  *  D  S  I  T  A  P  L  F  V  L  M  R  *  F  Y  R  *  P  G  *  I  V  L  A  Q  V  Y  I  R  *  P  S  Q  R  M  A  V  V  L  L  Y  I  L  K  S  Y  V  S  N  S  T  V  Q  F  R  T  *  N  F  D  A  S  L  *  N  C  S  W </second_frame>
            <third_frame>   D  P  A  T  V  Q  A  S  E  N  C  G  D  V  S  D  E  R  R  V  N  E  I  N  F  I  P  T  A  P  L  G  R  K  D  E  E  D  S  S  M  P  E  D  E  S  A  D  L  S  S  C  K  P  T  S  T  M  S  R  K  D  S  V  G  D  L  L  L  N  L  P  R  I  A  S  L  P  H  F  L  F  L  C  D  D  S  T  G  N  Q  A  R  *  S  *  L  K  S  T  S  G  N  H  R  K  G  W  L  *  F  S  C  I  Y  *  K  A  M  L  A  T  V  L  S  S  L  G  L  E  T  L  M  H  H  Y  R  T  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80953" stop="81234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPATVQASENCGDVSDERRVNEINFIPTAPLGRKDEEDSSMPEDESADLSSCKPTSTMSRKDSVGDLLLNLPRIASLPHFLFLCDDSTGNQAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="86321" PGL_stop="85077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86321" e_stop="86208"/>
            <exon e_start="85699" e_stop="85077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86321" e_stop="86208" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86207" i_stop="85700" i_length="508"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85699" e_stop="85077" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86321" stop="86208"/>
              <exon start="85699" stop="85155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86320" stop="86208"/>
              <exon start="85699" stop="85079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86313" stop="86208"/>
              <exon start="85699" stop="85077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86298" stop="86208"/>
              <exon start="85699" stop="85093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85425" stop="85095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAATAAGAAAAATCATCAGTAGCTAAAATGATCAGCTTCTTCAGAGCTTTCTTTCTTATAATAATTATCAGCTTTCTCATTTTCGTAGGAGCTCAAGCAAGAACTTTACTAG : GAAATTACCATGATGATGAGATGCTGATAGAGTTGAAGTTGGAAAGTGGTAATTATGGAAGGACACCATATAAGACACCTCCACCACCAACATCATCTTCACCAACACATCAAGAAATAGTTAATGGAAGACATGATAGTGTATTACCACCTCCTTCTCCCAAGACTGATCCAATTATTGGTCAACTCACAACAATTACTACTACTCCTCATCATGACGACACCGTCGCGGCGCCGCCTGTTGGTGGGAGGCACGATTATGTAGCCTCACCACCACCACCAAAGCCACAAGATGAACAAAGGCAGATCATTATCACATCCTCTTCTTCTACTTTGCCTCTTCAAGCTTCCTATTAAGCTAGCATCGGAACTTTATAATATAATATATGTTCACTACTAAGTGTAGTATTTTTTATTTTATGTTATTAAAGTAGCTACATGTATAATCTGGTTTTAGTTCACTTGATGAGTTAATTAACTCAAGAATAATATGTGTAATAGACGTATTGTAATGGAGTATTAACAACGTATGTACGTAGTAAATGAATTTGAGGGAGTGATATGTGGTTTTTAACTTATTAATCAATAACATAATGCAGTATTGTTATCAAACCAGAATTTATA</gDNA_template>
            <first_frame> T  N  K  K  N  H  Q  *  L  K  *  S  A  S  S  E  L  S  F  L  *  *  L  S  A  F  S  F  S  *  E  L  K  Q  E  L  Y  *  :  E  I  T  M  M  M  R  C  *  *  S  *  S  W  K  V  V  I  M  E  G  H  H  I  R  H  L  H  H  Q  H  H  L  H  Q  H  I  K  K  *  L  M  E  D  M  I  V  Y  Y  H  L  L  L  P  R  L  I  Q  L  L  V  N  S  Q  Q  L  L  L  L  L  I  M  T  T  P  S  R  R  R  L  L  V  G  G  T  I  M  *  P  H  H  H  H  Q  S  H  K  M  N  K  G  R  S  L  S  H  P  L  L  L  L  C  L  F  K  L  P  I  K  L  A  S  E  L  Y  N  I  I  Y  V  H  Y  *  V  *  Y  F  L  F  Y  V  I  K  V  A  T  C  I  I  W  F  *  F  T  *  *  V  N  *  L  K  N  N  M  C  N  R  R  I  V  M  E  Y  *  Q  R  M  Y  V  V  N  E  F  E  G  V  I  C  G  F  *  L  I  N  Q  *  H  N  A  V  L  L  S  N  Q  N  L   </first_frame>
            <second_frame>  Q  I  R  K  I  I  S  S  *  N  D  Q  L  L  Q  S  F  L  S  Y  N  N  Y  Q  L  S  H  F  R  R  S  S  S  K  N  F  T  R :   K  L  P  *  *  *  D  A  D  R  V  E  V  G  K  W  *  L  W  K  D  T  I  *  D  T  S  T  T  N  I  I  F  T  N  T  S  R  N  S  *  W  K  T  *  *  C  I  T  T  S  F  S  Q  D  *  S  N  Y  W  S  T  H  N  N  Y  Y  Y  S  S  S  *  R  H  R  R  G  A  A  C  W  W  E  A  R  L  C  S  L  T  T  T  T  K  A  T  R  *  T  K  A  D  H  Y  H  I  L  F  F  Y  F  A  S  S  S  F  L  L  S  *  H  R  N  F  I  I  *  Y  M  F  T  T  K  C  S  I  F  Y  F  M  L  L  K  *  L  H  V  *  S  G  F  S  S  L  D  E  L  I  N  S  R  I  I  C  V  I  D  V  L  *  W  S  I  N  N  V  C  T  *  *  M  N  L  R  E  *  Y  V  V  F  N  L  L  I  N  N  I  M  Q  Y  C  Y  Q  T  R  I  Y  </second_frame>
            <third_frame>   K  *  E  K  S  S  V  A  K  M  I  S  F  F  R  A  F  F  L  I  I  I  I  S  F  L  I  F  V  G  A  Q  A  R  T  L  L   : G  N  Y  H  D  D  E  M  L  I  E  L  K  L  E  S  G  N  Y  G  R  T  P  Y  K  T  P  P  P  P  T  S  S  S  P  T  H  Q  E  I  V  N  G  R  H  D  S  V  L  P  P  P  S  P  K  T  D  P  I  I  G  Q  L  T  T  I  T  T  T  P  H  H  D  D  T  V  A  A  P  P  V  G  G  R  H  D  Y  V  A  S  P  P  P  P  K  P  Q  D  E  Q  R  Q  I  I  I  T  S  S  S  S  T  L  P  L  Q  A  S  Y  *  A  S  I  G  T  L  *  Y  N  I  C  S  L  L  S  V  V  F  F  I  L  C  Y  *  S  S  Y  M  Y  N  L  V  L  V  H  L  M  S  *  L  T  Q  E  *  Y  V  *  *  T  Y  C  N  G  V  L  T  T  Y  V  R  S  K  *  I  *  G  S  D  M  W  F  L  T  Y  *  S  I  T  *  C  S  I  V  I  K  P  E  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86313" stop="86208"/>
                    <exon start="85699" stop="85344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKSSVAKMISFFRAFFLIIIISFLIFVGAQARTLLGNYHDDEMLIELKLESGNYGRTPYKTPPPPTSSSPTHQEIVNGRHDSVLPPPSPKTDPIIGQLTTITTTPHHDDTVAAPPVGGRHDYVASPPPPKPQDEQRQIIITSSSSTLPLQASY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="91674" PGL_stop="94641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91674" e_stop="91740"/>
            <exon e_start="92114" e_stop="92238"/>
            <exon e_start="92467" e_stop="92511"/>
            <exon e_start="92616" e_stop="92697"/>
            <exon e_start="92781" e_stop="92849"/>
            <exon e_start="92924" e_stop="93094"/>
            <exon e_start="93218" e_stop="93283"/>
            <exon e_start="94193" e_stop="94261"/>
            <exon e_start="94550" e_stop="94641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91674" e_stop="91740" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91741" i_stop="92113" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92114" e_stop="92238" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92239" i_stop="92466" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92467" e_stop="92511" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.974">
            <gDNA_intron_boundary i_start="92512" i_stop="92615" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92616" e_stop="92697" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92698" i_stop="92780" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92781" e_stop="92849" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.913">
            <gDNA_intron_boundary i_start="92850" i_stop="92923" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92924" e_stop="93094" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93095" i_stop="93217" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93218" e_stop="93283" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.854" acc_prob="0.974">
            <gDNA_intron_boundary i_start="93284" i_stop="94192" i_length="909"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94193" e_stop="94261" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.873" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94262" i_stop="94549" i_length="288"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="94550" e_stop="94641" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91674" stop="91740"/>
              <exon start="92114" stop="92238"/>
              <exon start="92467" stop="92511"/>
              <exon start="92616" stop="92697"/>
              <exon start="92781" stop="92849"/>
              <exon start="92924" stop="93094"/>
              <exon start="93218" stop="93283"/>
              <exon start="94193" stop="94261"/>
              <exon start="94550" stop="94641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTACGTGAAGTGCTAAAGGGTTTAGAATACCTTCATGATCATGGCTACATTCATCGGGATGTCAAA : GCTGGAAATATTCTCATTGATTCACGTGGTGGAATAAAGTTGGGAGATTTCGGTGTATCGGCCTACATGTTTGATTCAGGTGACAGGCAGCATATGCGGAATACATTTGCTGGAACTCCTTGTTG : GATGGCACCGGAGGTCATGGAGCAAGTGCATGGTTACGATTTCAA : AGCTGATATTTGGTCTTTTGGCATAACTGCTTTAGAGCTTGCTCATGGACATGCTCCTTTCTCAAAATACCCTCCAATGAAG : GTGTTGCTAATGACATTGAAAAATGAACCTCCACGCCTTGATTCTGAGAGGGACAGGAAGTTCTCGAAG : TCCTTTAGGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAAAGGCCTACAGCCAAAAAGTTGTTGAAGCATCCTTTCTTTAAAAAAGCTAGGTCCAATGATTATGTAGCAAGAACATTGTTGGAAGGCTTGCCATCTCTTGGTGATCGCATGCAAGAATTGAAG : AGGAAAGAAGAAGAATTGCTAGCACAAAAGAAGATGCCAGATGGGCAGAAAGAAGAAATGTCACAG : AATGAATATAAACGTGGGATTAGCTGCTGGAGCTTTGATGTTGAAGATTTGAAGGCACAGGCTTCCTTG : ATTCCAGATGAGGAAATTATTGGTGAGAATGACCACGGGGGGAGTTCAGATGCGCTCGCAGGAGTTGACAACCAAGGAAACCGGCTTCAATA</gDNA_template>
            <first_frame> S  T  *  S  A  K  G  F  R  I  P  S  *  S  W  L  H  S  S  G  C  Q   : S  W  K  Y  S  H  *  F  T  W  W  N  K  V  G  R  F  R  C  I  G  L  H  V  *  F  R  *  Q  A  A  Y  A  E  Y  I  C  W  N  S  L  L  :  D  G  T  G  G  H  G  A  S  A  W  L  R  F  Q  :  S  *  Y  L  V  F  W  H  N  C  F  R  A  C  S  W  T  C  S  F  L  K  I  P  S  N  E   : G  V  A  N  D  I  E  K  *  T  S  T  P  *  F  *  E  G  Q  E  V  L  E   : V  L  *  A  N  D  C  *  L  L  G  K  R  S  F  K  K  A  Y  S  Q  K  V  V  E  A  S  F  L  *  K  S  *  V  Q  *  L  C  S  K  N  I  V  G  R  L  A  I  S  W  *  S  H  A  R  I  E   : E  E  R  R  R  I  A  S  T  K  E  D  A  R  W  A  E  R  R  N  V  T   : E  *  I  *  T  W  D  *  L  L  E  L  *  C  *  R  F  E  G  T  G  F  L   : D  S  R  *  G  N  Y  W  *  E  *  P  R  G  E  F  R  C  A  R  R  S  *  Q  P  R  K  P  A  S  I </first_frame>
            <second_frame>  L  R  E  V  L  K  G  L  E  Y  L  H  D  H  G  Y  I  H  R  D  V  K  :  A  G  N  I  L  I  D  S  R  G  G  I  K  L  G  D  F  G  V  S  A  Y  M  F  D  S  G  D  R  Q  H  M  R  N  T  F  A  G  T  P  C  W :   M  A  P  E  V  M  E  Q  V  H  G  Y  D  F  K :   A  D  I  W  S  F  G  I  T  A  L  E  L  A  H  G  H  A  P  F  S  K  Y  P  P  M  K  :  V  L  L  M  T  L  K  N  E  P  P  R  L  D  S  E  R  D  R  K  F  S  K  :  S  F  R  Q  M  I  A  S  C  L  V  K  D  P  S  K  R  P  T  A  K  K  L  L  K  H  P  F  F  K  K  A  R  S  N  D  Y  V  A  R  T  L  L  E  G  L  P  S  L  G  D  R  M  Q  E  L  K  :  R  K  E  E  E  L  L  A  Q  K  K  M  P  D  G  Q  K  E  E  M  S  Q  :  N  E  Y  K  R  G  I  S  C  W  S  F  D  V  E  D  L  K  A  Q  A  S  L  :  I  P  D  E  E  I  I  G  E  N  D  H  G  G  S  S  D  A  L  A  G  V  D  N  Q  G  N  R  L  Q   </second_frame>
            <third_frame>   Y  V  K  C  *  R  V  *  N  T  F  M  I  M  A  T  F  I  G  M  S  K :   L  E  I  F  S  L  I  H  V  V  E  *  S  W  E  I  S  V  Y  R  P  T  C  L  I  Q  V  T  G  S  I  C  G  I  H  L  L  E  L  L  V   : G  W  H  R  R  S  W  S  K  C  M  V  T  I  S   : K  L  I  F  G  L  L  A  *  L  L  *  S  L  L  M  D  M  L  L  S  Q  N  T  L  Q  *  R :   C  C  *  *  H  *  K  M  N  L  H  A  L  I  L  R  G  T  G  S  S  R  S :   P  L  G  K  *  L  L  V  A  W  *  K  I  L  Q  K  G  L  Q  P  K  S  C  *  S  I  L  S  L  K  K  L  G  P  M  I  M  *  Q  E  H  C  W  K  A  C  H  L  L  V  I  A  C  K  N  *  R :   G  K  K  K  N  C  *  H  K  R  R  C  Q  M  G  R  K  K  K  C  H  R :   M  N  I  N  V  G  L  A  A  G  A  L  M  L  K  I  *  R  H  R  L  P  * :   F  Q  M  R  K  L  L  V  R  M  T  T  G  G  V  Q  M  R  S  Q  E  L  T  T  K  E  T  G  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91675" stop="91740"/>
                    <exon start="92114" stop="92238"/>
                    <exon start="92467" stop="92511"/>
                    <exon start="92616" stop="92697"/>
                    <exon start="92781" stop="92849"/>
                    <exon start="92924" stop="93094"/>
                    <exon start="93218" stop="93283"/>
                    <exon start="94193" stop="94261"/>
                    <exon start="94550" stop="94639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LREVLKGLEYLHDHGYIHRDVKAGNILIDSRGGIKLGDFGVSAYMFDSGDRQHMRNTFAGTPCWMAPEVMEQVHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLKNEPPRLDSERDRKFSKSFRQMIASCLVKDPSKRPTAKKLLKHPFFKKARSNDYVARTLLEGLPSLGDRMQELKRKEEELLAQKKMPDGQKEEMSQNEYKRGISCWSFDVEDLKAQASLIPDEEIIGENDHGGSSDALAGVDNQGNRLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97982" PGL_stop="96993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97982" e_stop="96993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97982" e_stop="96993" e_length="990"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97982" stop="97283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97982" stop="97406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97687" stop="96993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTCTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</gDNA_template>
            <first_frame> R  N  K  Y  K  K  K  G  G  K  G  N  P  S  A  G  V  E  L  S  W  K  A  A  H  T  F  T  L  K  V  G  *  N  L  N  L  L  T  L  V  S  H  L  Q  S  Q  L  S  P  T  L  *  C  R  L  H  T  N  F  C  H  F  G  L  L  F  S  V  L  Y  F  *  S  S  S  W  E  R  S  S  L  H  I  K  *  T  D  A  S  R  L  L  F  M  I  S  K  I  N  R  Q  D  *  C  I  I  I  M  I  I  P  P  S  *  I  S  N  F  T  M  *  I  P  L  P  V  K  S  C  L  Q  L  Q  R  K  R  E  G  C  Y  I  V  C  W  I  L  Q  E  I  K  K  R  E  K  L  *  D  S  N  S  W  L  W  L  N  L  R  R  M  S  Q  Q  D  *  Y  K  S  I  P  V  I  S  L  L  Q  L  N  L  M  D  Y  I  L  H  P  W  Q  G  *  L  N  R  *  S  *  T  F  H  I  D  K  I  H  K  N  S  R  G  I  S  C  C  T  C  G  V  G  H  L  P  H  C  T  K  N  T  L  L  L  K  *  K  Q  F  Y  N  V  S  K  Q  N  K  K  T  *  Q  V  I  I  L  D  P  F  L  L  F  Q  *  *  L  P  V  K  H  S  A  T  L  G  I  W  T  G  K  N  D  *  L  V  *  D  H  S  A  M  V  E  *  Q  S  D  F  L  E  S  P  A  *  S  I  T  S  F  H  K  N  N  K  E  N  G  K  E  A  E  I  R  S  V </first_frame>
            <second_frame>  E  T  S  I  K  K  R  G  E  K  A  T  L  V  L  E  L  N  S  V  G  K  Q  P  I  P  S  P  *  K  W  D  E  I  *  I  C  *  L  W  Y  L  I  Y  K  V  S  Y  L  L  H  F  D  V  D  F  T  Q  I  F  V  T  L  G  F  C  F  L  F  Y  I  F  E  A  L  P  G  N  A  R  A  Y  T  S  S  K  Q  T  L  Q  D  Y  Y  L  *  Y  P  K  L  T  G  K  I  N  V  *  S  *  *  *  Y  L  H  R  K  S  A  T  S  R  C  K  S  L  S  L  S  R  A  A  S  N  Y  R  E  R  E  K  G  V  I  *  Y  V  G  S  S  K  K  *  R  N  E  R  N  Y  R  I  V  I  P  G  Y  G  *  I  C  G  G  C  R  N  K  I  S  T  N  P  Y  Q  *  F  L  Y  S  S  *  I  *  W  I  T  S  C  I  H  G  K  V  S  *  T  D  E  V  R  P  F  I  *  I  R  Y  T  K  I  Q  E  A  L  V  A  A  P  V  E  S  A  T  C  L  I  A  L  R  I  L  S  C  *  N  K  N  S  F  T  T  F  L  S  R  T  K  K  L  S  K  S  *  F  *  I  H  S  Y  S  S  N  N  S  C  L  *  S  I  L  Q  H  W  E  Y  G  L  G  R  M  I  S  W  C  R  I  T  R  Q  W  L  S  S  S  Q  I  F  W  S  R  L  H  N  P  *  L  L  F  I  K  T  I  K  K  T  E  K  K  L  R  *  D  Q   </second_frame>
            <third_frame>   K  Q  V  *  K  K  G  G  K  R  Q  P  *  C  W  S  *  T  Q  L  E  S  S  P  Y  L  H  P  K  S  G  M  K  F  K  S  V  N  S  G  I  S  F  T  K  S  V  I  S  Y  T  L  M  *  T  S  H  K  F  L  S  L  W  A  F  V  F  C  F  I  F  L  K  L  F  L  G  T  L  E  P  T  H  Q  V  N  R  R  F  K  T  T  I  Y  D  I  Q  N  *  Q  A  R  L  M  Y  N  H  N  D  N  T  S  I  V  N  Q  Q  L  H  D  V  N  P  S  P  C  Q  E  L  P  P  T  T  E  K  E  R  R  V  L  Y  S  M  L  D  P  P  R  N  K  E  T  R  E  I  I  G  *  *  F  L  V  M  V  E  F  A  E  D  V  A  T  R  L  V  Q  I  H  T  S  D  F  S  T  P  A  E  F  D  G  L  H  P  A  S  M  A  R  L  A  E  Q  M  K  L  D  L  S  Y  R  *  D  T  Q  K  F  K  R  H  *  L  L  H  L  W  S  R  P  L  A  S  L  H  *  E  Y  S  P  V  K  I  K  T  V  L  Q  R  F  *  A  E  Q  K  N  L  A  S  H  N  F  R  S  I  L  T  L  P  I  I  V  A  C  K  A  F  C  N  T  G  N  M  D  W  E  E  *  L  A  G  V  G  S  L  G  N  G  *  V  A  V  R  F  S  G  V  A  C  I  I  H  N  F  F  S  *  K  Q  *  R  K  R  K  R  S  *  D  K  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066A20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="98004" PGL_stop="98522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98004" e_stop="98522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="98004" e_stop="98522" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98004" stop="98522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAATTTGAGTACATGTTGAAGTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTAGCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATCTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</gDNA_template>
            <first_frame> L  I  *  V  H  V  E  V  L  E  N  I  I  L  G  D  I  N  S  Y  F  Y  L  K  P  L  Q  E  F  A  P  F  F  L  V  A  P  S  E  R  L  S  W  E  V  K  Y  L  F  Y  *  S  V  F  F  Y  T  *  F  Q  *  L  N  *  P  Q  L  R  L  A  H  S  N  G  L  R  F  F  H  I  L  V  T  *  I  S  L  A  N  H  Y  H  A  S  P  L  V  R  A  L  M  Y  F  P  C  P  W  F  Y  F  S  P  K  I  H  *  E  L  S  *  R  N  L  S  A  M  G  C  L  A  S  E  S  *  S  G  F  I  I  S  T  I  S  P  S  T  S  R  H  T  I  S  A  I  L  C  I  C  L  M  L  *  E  T  I  T  I  V  I  F  *  S  F </first_frame>
            <second_frame>  *  F  E  Y  M  L  K  F  *  R  I  S  F  L  V  I  L  I  H  I  S  I  *  N  L  Y  K  N  L  P  R  F  S  W  L  R  H  R  K  D  C  R  G  R  *  N  T  F  F  I  K  V  Y  F  S  T  R  S  F  S  S  *  I  N  L  S  *  D  W  L  T  R  M  G  *  D  S  S  I  F  W  *  L  E  S  L  L  L  T  I  I  M  L  L  R  *  F  V  P  *  C  T  F  L  V  P  G  S  T  F  R  L  K  Y  T  R  S  *  V  E  E  I  L  V  P  W  D  A  *  L  Q  R  V  D  Q  A  L  *  F  P  Q  S  P  H  Q  P  A  G  T  L  Y  Q  L  F  S  V  F  A  *  C  Y  E  K  L  S  Q  L  S  S  S  D  P   </second_frame>
            <third_frame>   N  L  S  T  C  *  S  F  R  E  Y  H  S  W  *  Y  *  F  I  F  L  F  K  T  F  T  R  I  C  P  V  F  L  G  C  A  I  G  K  I  V  V  G  G  K  I  P  F  L  L  K  C  I  F  L  H  V  V  S  V  A  K  L  T  S  V  K  I  G  S  L  E  W  V  E  I  L  P  Y  F  G  D  L  N  L  S  C  *  P  L  S  C  F  S  A  S  S  C  L  D  V  L  S  L  S  L  V  L  L  F  A  *  N  T  L  G  A  E  L  K  K  S  *  C  H  G  M  L  S  F  R  E  L  I  R  L  Y  N  F  H  N  L  P  I  N  Q  Q  A  H  Y  I  S  Y  S  L  Y  L  L  D  A  M  R  N  Y  H  N  C  H  L  L  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98057" stop="98269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIFLFKTFTRICPVFLGCAIGKIVVGGKIPFLLKCIFLHVVSVAKLTSVKIGSLEWVEILPYFGDLNLSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="99840" PGL_stop="98873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99840" e_stop="99684"/>
            <exon e_start="99336" e_stop="98873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99840" e_stop="99684" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99683" i_stop="99337" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="99336" e_stop="98873" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99840" stop="99684"/>
              <exon start="99336" stop="99051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99812" stop="99684"/>
              <exon start="99336" stop="98873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG : GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACAATCACAGTAACTACTGATGCTTGATTCATGAATAT</gDNA_template>
            <first_frame> K  D  L  S  S  S  F  G  T  S  V  C  R  *  L  S  N  Y  T  E  S  Q  F  G  N  S  H  T  M  E  I  S  Q  S  W  S  K  I  S  P  Q  L  H  S  S  H  S  L  E  I  S  L   : G  E  R  G  H  L  L  A  V  E  M  N  D  I  K  G  A  T  E  T  K  I  E  V  R  E  L  N  K  V  S  D  K  G  D  S  I  L  K  S  V  R  V  D  I  T  R  G  V  I  M  G  I  I  G  P  S  G  S  G  K  S  T  I  L  R  A  L  N  R  L  W  E  P  L  R  A  L  F  F  L  M  V  L  I  F  V  I  W  M  C  S  V  F  V  V  R  L  A  C  C  S  S  F  Q  F  S  L  K  V  W  L  L  N  C  *  D  Q  T  K  N  A  N  L  L  V  N  *  T  D  L  N  L  T  N  L  K  V  H  C  V  *  Y  N  H  S  N  Y  *  C  L  I  H  E  Y </first_frame>
            <second_frame>  K  T  C  L  L  H  L  A  L  L  C  A  D  N  *  V  T  T  L  N  L  S  L  V  T  H  I  P  W  R  Y  H  K  V  G  A  K  L  V  L  S  S  I  A  H  T  P  W  R  F  H  *  :  E  K  E  G  I  Y  *  Q  W  K  *  M  I  L  K  V  Q  Q  K  L  R  L  R  L  G  N  *  T  R  Y  Q  I  R  V  I  L  Y  *  R  V  L  E  L  T  *  Q  E  E  *  S  W  G  L  L  A  P  V  V  A  E  N  Q  Q  F  Y  E  R  *  I  D  Y  G  N  P  *  G  H  C  F  S  *  W  Y  *  Y  L  *  S  G  C  A  L  S  S  S  *  G  W  H  V  V  P  A  S  S  S  L  *  R  Y  G  C  *  I  A  K  I  K  L  K  T  L  T  Y  *  *  I  R  Q  T  *  T  *  P  I  *  K  F  T  V  S  D  T  I  T  V  T  T  D  A  *  F  M  N   </second_frame>
            <third_frame>   R  L  V  F  F  I  W  H  F  C  V  Q  I  I  K  *  L  H  *  I  S  V  W  *  L  T  Y  H  G  D  I  T  K  L  E  Q  N  *  S  S  A  P  *  L  T  L  L  G  D  F  I  R :   R  K  R  A  S  T  S  S  G  N  E  *  Y  *  R  C  N  R  N  *  D  *  G  *  G  T  E  Q  G  I  R  *  G  *  F  Y  T  E  E  C  *  S  *  H  N  K  R  S  N  H  G  D  Y  W  P  Q  W  *  R  K  I  N  N  F  T  S  A  K  S  I  M  G  T  P  K  G  T  V  F  L  D  G  T  D  I  C  D  L  D  V  L  C  L  R  R  K  V  G  M  L  F  Q  L  P  V  L  F  E  G  M  V  V  K  L  L  R  S  N  *  K  R  *  P  I  S  K  L  D  R  L  E  L  D  Q  F  E  S  S  L  C  L  I  Q  S  Q  *  L  L  M  L  D  S  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066A20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99798" stop="99684"/>
                    <exon start="99336" stop="98990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNYTESQFGNSHTMEISQSWSKISPQLHSSHSLEISLGERGHLLAVEMNDIKGATETKIEVRELNKVSDKGDSILKSVRVDITRGVIMGIIGPSGSGKSTILRALNRLWEPLRALFFLMVLIFVIWMCSVFVVRLACCSSFQFSLKVWLLNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 101 chains have been computed
$ 
$ memory statistics:
$ 466280 bytes spliced alignments in total
$ 77 spliced alignments have been stored
$ 6055 bytes was the average size of a spliced alignment
$ 27376 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1520 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 112 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:24:11
-->
