<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 05:40:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342821" ref_strand="+" ref_description="SGN-U342821        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtaggaaaaaaaattgtagctgttctatttttgatgtcagtttgttggttgcttaactgagctagaaaataacatgttggctaagggtaaagctttctctgcctgatgtttattcgttgattgcttaactgagcagaaaataagatgttgctttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19308" stop="20069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19608" g_stop="19761" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U342821" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19608" e_stop="19761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGAAAAAAAATTGTAGCTTTTCTATTTTTGATGTCAGTTTGTTGGTTGCTTAACTGAGCTAGAAAATAACATGTTGGCTAAGGGTAAAGCTTTCTCTGCCTGATGTTTATTCGTTGATTGCTTAACTGAGGCAGAAAATAAGATGTTTGCT</genome_strand>
        <mrna_strand>GTAGGAAAAAAAATTGTAGCTGTTCTATTTTTGATGTCAGTTTGTTGGTTGCTTAACTGAGCTAGAAAATAACATGTTGGCTAAGGGTAAAGCTTTCTCTGCCTGATGTTTATTCGTTGATTGCTTAACTGA-GCAGAAAATAAGATG-TTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316548" ref_strand="+" ref_description="SGN-U316548        Tomato 200607 #1 [26 ESTs aligned] arabidopsis/peptide: | Symbol: None | CCAAT-box binding transcription factor Hap5a, putative | chr3:18019643-18020967 REVERSE | Aliases: T8P19.100(evalue: 1e-87, score=319) genbank/nr: CONSTANS(evalue: 2e-120, score=434)">
      <seq>gaattcggcacgaggaataagtacaaagctagagcagagcaccattacacctttcccattttctctacacagatagtagcttccattttccgcaaaccgccatggacaacaaccctcaccaatctccgactgaggccgctgcggcggccgcagcagcggcagcggcggctcagtcagccacgtatccgtcgcagactccataccaccatctccttcagcagcaacagcagcagctacagatgttttggacttaccagcgtcaagaaatcgagcaagtcaatgatttcaaaaaccaccaacttccccttgctcgtatcaaaaagatcatgaaagctgatgaagatgttcgtatgatctctgctgaagctccagttctgttcgcgaaagcttgtgagcttttcattctggagctcaccatccgttcgtggcttcacgctgaggaaaacaagcgcaggactttacagaagaatgacatcgctgcggcgattactcgtactgatatttttgattttctggttgacatcgttcctagggatgaaattaaggatgagggtgttgggcttggacccggaattgtgggttctactgctagtggtgtgccgtactattaccctccgatgggccagccggctccgggtggagtgatgcttggtaggcctgctgttcctggggttgatccatcaatgtatgtgcaccctccaccgtcacaggcgtggcaatctgtgtggcagactggagacgataattcctatgctagtggaggtagcagtggacagggtaaccttgatggccaaatttaaaagatctcgctgctgccagtttggaggcttaacagcacatgtgaaactgatggttatgatagggaaatgtaatttcttcaaattgtgaatccaccttttatggcttctgtcatggatattgtttgactttaaccgacttgaaccttctgtctgtataaaacttgacttttgtgtatttctagatttctctttaaatccttttggggttgctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30615" stop="25687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30300" g_stop="29520" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="796" r_length="781" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29519" i_stop="26204" i_length="3316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26203" g_stop="25987" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="1012" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1013" polyA_stop="1032"/>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U316548" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>998</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30300" e_stop="29520"/>
          <exon e_start="26203" e_stop="25987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGTACAAAGCTAGAGCAGAGCACCATTACACCTTTCCCATTTTCTCTACACAGATAGTAGCTTCCATTTTCCGCAAACCGCCATGGACAACAACCCTCACCAATCTCCGACTGAGGCCGCTGCGGCGGCCGCAGCAGCGGCAGCGGCGGCTCAGTCAGCCACGTATCCGTCGCAGACTCCATACCACCATCTCCTTCAGCAGCAACAGCAGCAGCTACAGATGTTTTGGACTTACCAGCGTCAAGAAATCGAGCAAGTCAATGATTTCAAAAACCACCAACTTCCCCTTGCTCGTATCAAAAAGATCATGAAAGCTGATGAAGATGTTCGTATGATCTCTGCTGAAGCTCCAGTTCTGTTCGCGAAAGCTTGTGAGCTTTTCATTCTGGAGCTCACCATCCGTTCGTGGCTTCACGCTGAGGAAAACAAGCGCAGGACTTTACAGAAGAATGACATCGCTGCGGCGATTACTCGTACTGATATTTTTGATTTTCTGGTTGACATCGTTCCTAGGGATGAAATTAAGGATGAGGGTGTTGGGCTTGGACCCGGAATTGTGGGTTCTACTGCTAGTGGTGTGCCGTACTATTACCCTCCGATGGGCCAGCCGGCTCCGGGTGGAGTGATGCTTGGTAGGCCTGCTGTTCCTGGGGTTGATCCATCAATGTATGTGCACCCTCCACCGTCACAGGCGTGGCAATCTGTGTGGCAGACTGGAGACGATAATTCCTATGCTAGTGGAGGTAGCAGTGGACAGGGTAACCTTGATGGCCAAATGTAAGTTTGTCGTTTCTGCTATGTTATCTTGTTGCCTTTAGATCTGGATTCGCTAGGGTTTGAAAATTAAGATTGGAAAATGAAAAATGCTTCATTCTGTATCCTGAAAGTGGTGAATTTCTTCCTTTTCTTGCTTAATTTCGAGGATTGAAGTCAGGTATAATAGTTTTTCTTATTAAAACTTGAAGTACTAAATTTTGGTACTTATTGGCCCAAATTGAACGAATTGGATACTGGTTAAGGTAGATGTTTGAGAAATACGATTGGAAAGTAAAAATGCTTTATTCTTTGTTCCTTTTGGTGATAATTTTCTTCTTTTTGATTTTCCTTTTGAGGATTTAAGGTCAAGAGTGTTCGCATTTTTGTGGAAACTGGAATCATGGAGTATTGGAATGAAATTGGCGCTTAATGTTTTGTTTAAAATGCTGAGCCCGATTAGTTTAGGATTGACTGGAGTAGTTGTTGTCTTCGTTTATTTTCAAAAAGAACTAATTTAGGCAATCAGTACCAAGTTCAAGCAACTGCATGATTGATGTCATGCAATCTCTAGTTGATTGTGCCTGTGATGTGGTGCTAGATACATCAACAATATACCCAATGTAATCCCACTAGTGGGTTTTGGGGATGGTGGTGTGTATACAACCTTAGTCCTACATGAGAAGGTTGATAGGTTGTTTCGTATGTTATGGTGGTAGATGTTTAAATTAACTGGTTACTTGCTTAACTTGGCATGTGTTTTTTCTTATAGCTTCCTTAATCCTGTCTTGTTTCTTTTGCATATTGAGGGAAGTGATTTTCCATATTAAGTGCATATAACTTGCTAAAAAAGACATTGATTGTAGTACTCTACTTATATCAACAGATACTCTCTCACACATTTCCTTTGATACTCTACACATGTGGTTTGCTTGTAAATGTTAATGGATATGTAGGTTAATTGTATTCTGCAACCAAATTGCATAGGTCACAGAGAGTTCTTGTTATTTTTTCTAAAGCCTCCTTAGATAATGCACATCTTGAAGCAATGCAGCTTCCCTTTCTCTGTAATGCTTCATGAGTTGGACAAGCTCTTCTGACTACTAGGCAGGTGTGAAACATTTCACCTTAGTTGGTGGTTTGGTGCCACACTCTTCGGTACAGACTTGCAGCATCCTGTTGACCTCCCTATTACTTCAGTCAGCATCATATTGTACACCCCATTTACTGACAACAAACCATCCTGATGGTGTTTCCATACCATGTTATCCAGGTTCCATATTAGTTCCCTAAAAACCACCAATTATTCTCAGCAGTTCTGCTACCTTTGCTATTCTCAATCATTTAACAACCTTCTGAAAGCTAAATTCCAGTCCTGAGGGGCCCAGATCTCCTCTACTTTGACTTCAGGATTGGTGCATTATGAGAATTGTCCAGGAAACAAAGCCTGCAATGCCCCCTGTTCACTTCCAGTTCGCCTTCCAAAATCCAGTTCTGATTTATGTTTGAATCATTTATCCCTTGTTTACACATAAAGAAAAGAGATTTTGTGTGCTGTGGTAAGTAATTAGGAGGTAAAGATGTGTGCCAAACATTTAACAGTGACTGAGTAGGGAAAAAGTAATGACATGTAAGGTTTTAAGATATGCAAGTAACTATCTAGTTTTTGTTATTGAGATATTTTTTTCTGTTAAAAAGATTGGCCAGTGTATGAGCGAAAAAAATCACCTTGGAGACTTGGGTATCTAGAGCTGGTGTTTCTTGTATATCTCTTGTTTAAAGACAGTTGCGCCAGTGACTTGTATATTTTTACTTGTGACTCAATCAGTTATCATTCCATGGATTAGACATGTTCAGAATCTTACATTGGTTGATAGAAGTGTAGATTTCCTAAAATCTATTGTTGATTAAGATTAGATTTGATGAACTGGGGATCCAAGTTGTTTTTGTTTTTAGGCTTCTTTTCAGTTTATGACTGCAAGTGTAGATTCTCATCGATCTTTTTTGATAGAAGAACCAAATATTACAATGTTACCTTTCTAAAAAAAAATAAAATATTGAGTTTAATTTTCACTTGTAACTGAACTGTGTAAGGAGTAATAAGTGCAATGGAACATCTCGTACTAGAGCAAATAATCAGCCAGTAGTTTATCAGGTTCTTGGTAATGCTTGTTCATAAATCATAGCACTAGTATGATTTCTTTCTAGCCTTTTCCTCACTTGGCCCATCCTCCTTTTGGGGTTTTAGTGATTTTAATGAAGAGGACGGTGGAAGCAGAAAGGGAAGTATGAGTAATGGGACTGGGGATAAAGAGCTGTTAGTAACATGTATGCAAGAAAAATAGGAAAGTTTTCTAGGGAGCTGCTAATAGTTGCAAGTTTTGGCACGTGGAAGAGTACTCATTGGGCCAAGGTTACCAACAAAAGGGGTACTCTGTTAGAGGCCTTCATTATTTGCACATATTTTCTCTTTTTCATGTGTACACTTTTCTATTCCCAGAGGATTAGCACTATTCTTGTATTTTCTTAGTCTTTTTATTACTTCCATGTTGTTTTTGTTTGTTATTACCACTTCTTTTTCACCTGTCCTTGAGCCGAGGGTCTTCGGAAACAGGACCTTCACAAGGTAGGGGTAAGGACTGTTTTCATACTACACAGTACCCTCCCATAACTTCACTTGTGGGATTGCACTTGGATTATTGTTGGTTGTTTTGTTGTTATTTTCTCTTAATGCCTATCAGCCCAATCACACTAGTCTTCAATTATAATACCTTTATGGAACTTGAGCCACTGTATCCTCTTCTTCTTGATAATATGATTAAGTTTTTATTCTTCTGTCTTTGGTAATCCCTGGTTGAATACAATTGTTTTTTAACAGGCACATTATTTTTTCATGTATTTATCCACCTAGCTTCAAGTTGATTACTGTATTTTTTGAATTTTTTTTTTGTGCAACTCTGATTCATGAACCAGATGTCATTGATGATGATGACTTCTCCTCTTTCCTTGAATGTCTTTAGGTATTTTGTTTCATATAAAAGGAGAAGTCATTTGTTTCATATCACAGTGGTATCTTGATTTGAAAGTTGAAATATGTTGCCTACACTGTAGGCGTACCTGCAATGAACATCAAGGCTGATATGCTACAATTCTGTCTGTTTTGATTGTAGTTTCTCAATTTATCTTATTTAATGGCATGTCAACAAATATAACACTTTTTGTATCTTCTTGATTTATGGTTTTTTTTGTATGACTATTCTTCAGGATCTAAAAAAACTTATCCATCTTGTCCAACCATTAAACCTTGGTACTAAATTTTCTCCCCTTTCCTTTGCTGCAGTTAAAAGATCTCGCTGCTGCCAGTTTGGAGGCTTAACAGCACATGTGAAACTGATGGTTATGATAGGGAAATGTAATTTCTTCAAATTGTGAATCCACCTTTTATGGCTTCTGTCATGGATATTGTTTGACTTTAACCGACTTGAACCTTCTGTCTGTATAAAACTTGACTTTTGTGTATTTCTAGATTTCTCTTTAAAATCCTTTTGGGGTTGCTA</genome_strand>
        <mrna_strand>AATAAGTACAAAGCTAGAGCAGAGCACCATTACACCTTTCCCATTTTCTCTACACAGATAGTAGCTTCCATTTTCCGCAAACCGCCATGGACAACAACCCTCACCAATCTCCGACTGAGGCCGCTGCGGCGGCCGCAGCAGCGGCAGCGGCGGCTCAGTCAGCCACGTATCCGTCGCAGACTCCATACCACCATCTCCTTCAGCAGCAACAGCAGCAGCTACAGATGTTTTGGACTTACCAGCGTCAAGAAATCGAGCAAGTCAATGATTTCAAAAACCACCAACTTCCCCTTGCTCGTATCAAAAAGATCATGAAAGCTGATGAAGATGTTCGTATGATCTCTGCTGAAGCTCCAGTTCTGTTCGCGAAAGCTTGTGAGCTTTTCATTCTGGAGCTCACCATCCGTTCGTGGCTTCACGCTGAGGAAAACAAGCGCAGGACTTTACAGAAGAATGACATCGCTGCGGCGATTACTCGTACTGATATTTTTGATTTTCTGGTTGACATCGTTCCTAGGGATGAAATTAAGGATGAGGGTGTTGGGCTTGGACCCGGAATTGTGGGTTCTACTGCTAGTGGTGTGCCGTACTATTACCCTCCGATGGGCCAGCCGGCTCCGGGTGGAGTGATGCTTGGTAGGCCTGCTGTTCCTGGGGTTGATCCATCAATGTATGTGCACCCTCCACCGTCACAGGCGTGGCAATCTGTGTGGCAGACTGGAGACGATAATTCCTATGCTAGTGGAGGTAGCAGTGGACAGGGTAACCTTGATGGCCAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAGATCTCGCTGCTGCCAGTTTGGAGGCTTAACAGCACATGTGAAACTGATGGTTATGATAGGGAAATGTAATTTCTTCAAATTGTGAATCCACCTTTTATGGCTTCTGTCATGGATATTGTTTGACTTTAACCGACTTGAACCTTCTGTCTGTATAAAACTTGACTTTTGTGTATTTCTAGATTTCTCTTT-AAATCCTTTTGGGGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333375" ref_strand="+" ref_description="SGN-U333375        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein, contains Pfam profiles: PF00571 CBS domain, PF00564: PB1 domain | chr5:20589102-20592159 REVERSE | Aliases: MFB16.3(evalue: 1e-29, score=127) genbank/nr: gi|50904313|ref|XP_463645.1| P0592G05.9 [Oryza sativa (japonica cultivar-group)] (evalue: 8e-30, score=133)">
      <seq>tcaagattaaagacaaaaaagggaggatgcacaggttcaactgtgatattcagaacatgactgattttatagctgccataattcaaagagtgggggatgacattgaccgcaccaattttcctcagattctgtatgaagatgaagatcatgacaaggttgtactggcatcagatggtgatcttacagcagctattgtccatgcaagatcttcaggttggaagggactaaaattgcacttggactattcaggaacaacgggcggtagtttggattatgctcatcctgaatctgcatgggcctcagcctacagcactgtagcagctggtgctgcattagttgcaggcttaggcgtgttagcattcttaaggagatttggtaactaattacttgaaagaagttcactcttgataaaccaggaattggagtagcatattgattcatatgagctcgatgaaccaattatatttgactgaatgttggtgttatagaattggacacttgcgctgttttgggatcattttaccttttcctcgtctgcaatccagatttgcaggttttcattttgagtgatgtaaattgcaccaaataaatctcttgcgttgttcaagaatgaactggcaacgccacgcaaattttagtgccaagagttgtcaggagtttatatttcatacgggactgtgatatactgtatttgttacgtaaaacacatgtaatgcaccaactatgtgttctaattctattctttgcaagggatggtagacaacgtccctttacgtcatttgtacaactgcacaactattgctatccttaagcttgaggaaaattttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36921" stop="34457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36621" g_stop="36577" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36576" i_stop="35795" i_length="782">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35794" g_stop="35709" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="131" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35708" i_stop="35602" i_length="107">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35601" g_stop="35512" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="221" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35511" i_stop="35367" i_length="145">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35366" g_stop="34747" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="841" r_length="620" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U333375" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36621" e_stop="36577"/>
          <exon e_start="35794" e_stop="35709"/>
          <exon e_start="35601" e_stop="35512"/>
          <exon e_start="35366" e_stop="34747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATTAAAGACAAAAAAGGGAGGATGCACAGGTTCAACTGTGGTATGTTTAAATAATATGCTTTTAGTTAACCAAAAAAATTAGGCACTTGTCAATGTTATGATGTTATCAGATGACTTGTGTATCTTTTTATGTACACCTAATAAATAGCCGTTATCCCCTATATTTTCTTTTGGTGCACCCATGAGGTTTCGCTGTGGGTGTCGTTCATAGAAAATCATATCTTTGTAAGATTTTCTACTTTTTGGTATACTTCTTATATGCTGGTGTTTTATGCTCTTGGTTTATCAAATCTTGTTGCTTGATTTCAAAATCAGATACGACCTTGTGTATCTTGTACCTGGAAATTCTTGTTGCCATTGGCCCATTTGTTTATATATGCATTCATGATGCCAAATCATGCAGTACTGTTGACATGTGTAACAAACCAATAGATGTGCACCTCTATTTTCTCTCTTTAAGGCATCTTGAGACCTGCCTTCTAAACTGTCGTAATTTTCCCAGAGCTCTTGACTCCTATCAAATTTATGGAAGTTCTGTCCTTTCAACTGTTTCCGTATCATTTGTGTTTCTCGATTGTTCTTTATGTTGGTGCTCTTGAATATCACTATCAGGCATTATATATCCAGCAGTGTCTGTTGCTTGCTCTTTTTTATTATTATTAGAGAGAAAAATTTGTACTTGTTTGTTTTTATTGTCTGTTGAAACTGACTCTAGGAAATTGATATGATATTTGTGCTTTGTTGTCTTTCATAATTTTACAACCATGACAATCTTGAGTCCCACAATGAGTCGATGACCCTATTATTTTTATGATATTTCAGATATTCAGAACATGACTGATCTAATAGCTGCCATAATTCAAAGAGTGGGGGATGACATTGACCGCACCAATCTTCCTCAGATTCTGGTTAAATGCATTAATTTTTCCTCGTACATTTGAATGATTCTCGTCCTCTTGGTTTTCCCTGTTTGAGCAAGTTGATTATTATATTCATAACAATTACTCTATTGCAGTATGAAGATGAAGATCATGACAAGGTTGTACTGGCATCAGATGGTGATCTTACAGCAGCTATTGACCATGCAAGATCTTCAGGTTGGAAGGTATGATTGACTTTCCTTTGACCTTACTTAATGTGAATGAACATAAACCCTCGTAACAGGAAGGAAGATTGACTTATGATTTAAATTTTGTCTCTCTTTTCTTGATTACGAAATAAGGACTGATGACAAAAATCAACCTGAACAGGGACTAAAATTGCACTTGGACTATTCAGGAACAACGGGCGGTAGTTTGGATTATGCTCATCCTGAATCTGCATGGGCCTCAGCCTACAGCACTGTAGCAGCTGGTGCTGCATTAGTTGCAGGCTTAGGCGTGTTAGCATTCTTAAGGAGATCTGGTAACTAATTACTTGAAAGAAGTTCACTCTTGATAAACCAGGAATTGGAGTAGCATATTGATTCATATGAGCTCGATGAACCAATTATATTTGACTGAATGTTGGTGTTATAGAATTGGACACTTGCGCTGTTTTGGGATCATTTTACCTTTTCCTCGTCTGCAATCCAGATTTGCAGGTTTTCATTTTGAGTGATGTAAATTGCACCAAATAAATCTCTTGCGTTGTTCAAGAATGAACTGGCAACGCCACGCAAATTTTAGTGCCAAGAGTTGTCAGGAGTTTATATTTCATACGGGACTGTGATATACTGTATTTGTTACGTAAAACACATGTAATGCACCAACTATGTGTTCTAATTCTATTCTTTGCAAGGGATGGTAGACAACGTCCCTTTACGTCATTTGTACAACTGCACAACTATTGCTATCCTTAAGCTTGAGGAAAATTTTATAAGCTAAAGAGT</genome_strand>
        <mrna_strand>TCAAGATTAAAGACAAAAAAGGGAGGATGCACAGGTTCAACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGAACATGACTGATTTTATAGCTGCCATAATTCAAAGAGTGGGGGATGACATTGACCGCACCAATTTTCCTCAGATTCTG...........................................................................................................TATGAAGATGAAGATCATGACAAGGTTGTACTGGCATCAGATGGTGATCTTACAGCAGCTATTGTCCATGCAAGATCTTCAGGTTGGAAG.................................................................................................................................................GGACTAAAATTGCACTTGGACTATTCAGGAACAACGGGCGGTAGTTTGGATTATGCTCATCCTGAATCTGCATGGGCCTCAGCCTACAGCACTGTAGCAGCTGGTGCTGCATTAGTTGCAGGCTTAGGCGTGTTAGCATTCTTAAGGAGATTTGGTAACTAATTACTTGAAAGAAGTTCACTCTTGATAAACCAGGAATTGGAGTAGCATATTGATTCATATGAGCTCGATGAACCAATTATATTTGACTGAATGTTGGTGTTATAGAATTGGACACTTGCGCTGTTTTGGGATCATTTTACCTTTTCCTCGTCTGCAATCCAGATTTGCAGGTTTTCATTTTGAGTGATGTAAATTGCACCAAATAAATCTCTTGCGTTGTTCAAGAATGAACTGGCAACGCCACGCAAATTTTAGTGCCAAGAGTTGTCAGGAGTTTATATTTCATACGGGACTGTGATATACTGTATTTGTTACGTAAAACACATGTAATGCACCAACTATGTGTTCTAATTCTATTCTTTGCAAGGGATGGTAGACAACGTCCCTTTACGTCATTTGTACAACTGCACAACTATTGCTATCCTTAAGCTTGAGGAAAATTTTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317559" ref_strand="+" ref_description="SGN-U317559        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein, contains Pfam profiles: PF00571 CBS domain, PF00564: PB1 domain | chr5:25435820-25439410 REVERSE | Aliases: MLE2.12, MLE2_12(evalue: 6e-62, score=234) genbank/nr: gi|15242788|ref|NP_201154.1| CBS domain containing protein [Arabidopsis thaliana] gi|9758290|dbj|BAB08814.1| emb|CAB86899.1~gene_id:MLE2.12~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 4e-60, score=234)">
      <seq>ctcgccggaaaatcttcttccggcagttgacacttgaatccacagcgttatcaatattgttcatatttttctcctattttttcggctgagggccgtcttttcctgtattcgaccgttgacaattttatccatctcgtggttccgttgaaatctcaagtacaagtttttttattgaataatttgattgctgtagagttcagatgccgacgagtcaaggaggaggatcatcatcgaggagaagcatatcgttgacgaactcttcttcacttgctaagaagaaagcagcagcggaaaatgaaggagtacaaccggattctgctcaccggaagtcgatttctgtatctcgttctatgggactgactggagagcgcacagttaagagattgaggctgtcaaaagcccttacaatacctgatactacaagtatttatgaagcttgccgcaagatggctgctcgcagagttgatgctttgttgttgactgattcaaatgcattactatgtggtatcctgacagataaggatatagcaacgagggttattgctccagaagttaatatacaggaaacaccagtttcaaagataatgacgaaaaatccggtttttgtgctttctgacacacttgctgtggaggctttgcagaaaatggtgctaggaaaatttagacatttgccagttgtagataatggagaggtcgttgctttgcttgatattgcaaagtgcctttatgatgcgattgctcgccttgaaagggcagctgagaaaggaaaggccattgcagctgccgttgagggagttgaaaaacactgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41027" stop="38387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40727" g_stop="40376" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40375" i_stop="39381" i_length="995">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39380" g_stop="39212" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="521" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39211" i_stop="39055" i_length="157">
            <donor d_prob="0.567" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39054" g_stop="38922" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="654" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38921" i_stop="38844" i_length="78">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38843" g_stop="38687" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="811" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U317559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40727" e_stop="40376"/>
          <exon e_start="39380" e_stop="39212"/>
          <exon e_start="39054" e_stop="38922"/>
          <exon e_start="38843" e_stop="38687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGAAAATCTTCTTCCGGCAGTTGACACTTGAATCCACAGCGTTATCAATATTGTTCATATTTTTCTCCTATTTTTTCGGCTGAGGGCCGTCTTTTCCTGTATTCGACCGTTGACAATTTTATCCATCTCGTGGTTCCGTTGAAATCTCAAGTACAAGTTTTTTTATTGAATAATTTGATTGCTGTAGAGTTCAGATGCCGACGAGTCAAGGAGGAGGATCATCATCGAGGAGAAGCATATCGTTGACGAACTCTTCTTCACTTGCTAAGAAGAAAGCAGCAGCGGAAAATGAAGGAGTACAACCGGATTCTGCTCACCGGAAGTCGATTTCTGTATCTCGTTCTATGTATGTTTAATTCCTTTATTGAAGTAACGGATATTGCACAAGTTTCCGGAAACTCTAAAGCAAATGTTTCTATAATGTCCGGATGTATTGAACTCAAAATAATCTTTTTAGTTTTGAAATATATTAATTCCAAAACGTTCGCAGAGATATGGATGTTTTCTCATTTAGGTACATCGTTGGACTTTGTGCTAGTAAATTTGGGGAAGTTGGTGGTGCCATACCGTTGTGGCCATCATATATTATTAACAGTGTTGGATTTAGTTTTGCCACCCGCTTGAAATGTTTGTCATGTAAAATTAAGCTTTACTTGATTCTTCCACTGAGCTTCTCCCCCCAACTTGAACATTGGAGATGGATATGAGCTCTTAGTCAGGGATATAAATGATTTATTTGCTGCTTACTTATAGCTATATGAGGGAAAAGAAAAGAGTTAATACTCTATACTTAGAATGTTTGGAAGTAAGGAAAAAATATTTTATAGTTGGAACCTCAGCTCAGTGATTGTTATTATCACAGCAAAGTCTTATCTGATGTTGAAAAACTGCATGATGGAAGTGCTTAATTGTATGCTGTAATCGTCTATGGATGACTTGTTCGCTTTACACCCATGTCCAATACTCAGATGCTCCCATCATTCATTTTGAGTGGTTCAATTGGCTATACTATGCAGGCTTCCTTGAGGTTCTTGTTTGATCAGGTTTTTAGTTTTTTTCAGTCCTTTTTTAGGTGGTTGATTTTTTTTTCTCTAATGCAACTTTTGGAGATCGCTTAGTAATTTAAGTATACAGTCCTTTGTTATGTTCTTGCCACATGTAGTGAAATTTTATTAAGGAACAAAGCAATAGCTATGAGATTCTTTTGCTAGTGCGGAATACTAATATTTAAAAAAACTTGTTTTGCTTTCAAGTTGGGATCAGTAATAGTCAGTTTGATTTGTAATAATCATTTTGTGTGCTTATTTGAATTTTGATATTTGTTTCACAAATTTGGAACAGGGGACTGACTGGAGAGCGCACAGTTAAGAGATTGAGGCTGTCAAAAGCCCTTACAATACCTGATACTACAAGTATTTATGAAGCTTGCCGCAAGATGGCTGCTCGCAGAGTTGATGCTTTGTTGTTGACTGATTCAAATGCATTACTATGTGGTATCCTGACAGATAAGGTTTGACTTTGATCATGCTAAAAGGCTGTAAAATTTAAGTAAATAGACCTCTGTAGAGCTGCTTATATTGCTGATGCTTTTCCTTTACCCATTGTGGTGATATCTTTAACTAATTCTTCACGCATCTTTTCTTTTATTTCCTTTGGGCAAATTGAAGGATATAGCAACGAGGGTTATTGCTCCAGAAGTTAATATACAGGAAACACCAGTTTCAAAGATAATGACGAAAAATCCGGTTTTTGTGCTTTCTGACACACTTGCTGTGGAGGCTTTGCAGAAAATGGTGCTAGGTTGGTGTATTTGAAATAACTCAAGCTGTTAACTTTTTTCAACACCTTTCCAACATCTTATGTTTGTTCTGACAACAGGAAAATTTAGACATTTGCCAGTTGTAGATAATGGAGAGGTCGTTGCTTTGCTTGATATTGCAAAGTGCCTTTATGATGCGATTGCTCGCCTTGAAAGGGCAGCTGAGAAAGGAAAGGCCATTGCAGCTGCCGTTGAGGGAGTTGAAAAACACTGGGG</genome_strand>
        <mrna_strand>CTCGCCGGAAAATCTTCTTCCGGCAGTTGACACTTGAATCCACAGCGTTATCAATATTGTTCATATTTTTCTCCTATTTTTTCGGCTGAGGGCCGTCTTTTCCTGTATTCGACCGTTGACAATTTTATCCATCTCGTGGTTCCGTTGAAATCTCAAGTACAAGTTTTTTTATTGAATAATTTGATTGCTGTAGAGTTCAGATGCCGACGAGTCAAGGAGGAGGATCATCATCGAGGAGAAGCATATCGTTGACGAACTCTTCTTCACTTGCTAAGAAGAAAGCAGCAGCGGAAAATGAAGGAGTACAACCGGATTCTGCTCACCGGAAGTCGATTTCTGTATCTCGTTCTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACTGACTGGAGAGCGCACAGTTAAGAGATTGAGGCTGTCAAAAGCCCTTACAATACCTGATACTACAAGTATTTATGAAGCTTGCCGCAAGATGGCTGCTCGCAGAGTTGATGCTTTGTTGTTGACTGATTCAAATGCATTACTATGTGGTATCCTGACAGATAAG.............................................................................................................................................................GATATAGCAACGAGGGTTATTGCTCCAGAAGTTAATATACAGGAAACACCAGTTTCAAAGATAATGACGAAAAATCCGGTTTTTGTGCTTTCTGACACACTTGCTGTGGAGGCTTTGCAGAAAATGGTGCTAG..............................................................................GAAAATTTAGACATTTGCCAGTTGTAGATAATGGAGAGGTCGTTGCTTTGCTTGATATTGCAAAGTGCCTTTATGATGCGATTGCTCGCCTTGAAAGGGCAGCTGAGAAAGGAAAGGCCATTGCAGCTGCCGTTGAGGGAGTTGAAAAACACTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336185" ref_strand="+" ref_description="SGN-U336185        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein, contains Pfam profiles: PF00571 CBS domain, PF00564: PB1 domain | chr5:25435820-25439410 REVERSE | Aliases: MLE2.12, MLE2_12(evalue: 3e-48, score=189) genbank/nr: gi|15242788|ref|NP_201154.1| CBS domain containing protein [Arabidopsis thaliana] gi|9758290|dbj|BAB08814.1| emb|CAB86899.1~gene_id:MLE2.12~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 2e-46, score=189)">
      <seq>gtttcatcttccatccgtagggttcccctccatctctccgtccactcctcgccggaaaatcttcttccggcagttgacacttgaatccacagcgttatcaatattgttcatatttttctcctattttttcggctgagggccgtcttttcctgtattcgaccgttgacaattttatccatctcgtggttccgttgaaatctcaagtacaagtttttttattgaataatttgattgctgtagagttcagatgccgacgagtcaaggaggaggatcatcatcgaggagaagcatatcgttgacgaactcttcttcacttgctaagaagaaagcagcagcggaaaatgaaggagtacaaccggattctgctcaccggaagtcgatttctgtatctcgttctatgggactgactggagagcgcacagttaagagattgaggctgtcaaaagcccttacaatacctgatactacaagtatttatgaagcttgccgcaagatggctgctcgcagagttgatgctttgttgttgactgattcaaatgcattactatgtggtatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41073" stop="38920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40774" g_stop="40376" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40375" i_stop="39381" i_length="995">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39380" g_stop="39220" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="560" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U336185" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40774" e_stop="40376"/>
          <exon e_start="39380" e_stop="39220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTCTTCCATCCGTAGGGTTCCCCTCCATCTCTCCTTCCACTCCTCGCCGGAAAATCTTCTTCCGGCAGTTGACACTTGAATCCACAGCGTTATCAATATTGTTCATATTTTTCTCCTATTTTTTCGGCTGAGGGCCGTCTTTTCCTGTATTCGACCGTTGACAATTTTATCCATCTCGTGGTTCCGTTGAAATCTCAAGTACAAGTTTTTTTATTGAATAATTTGATTGCTGTAGAGTTCAGATGCCGACGAGTCAAGGAGGAGGATCATCATCGAGGAGAAGCATATCGTTGACGAACTCTTCTTCACTTGCTAAGAAGAAAGCAGCAGCGGAAAATGAAGGAGTACAACCGGATTCTGCTCACCGGAAGTCGATTTCTGTATCTCGTTCTATGTATGTTTAATTCCTTTATTGAAGTAACGGATATTGCACAAGTTTCCGGAAACTCTAAAGCAAATGTTTCTATAATGTCCGGATGTATTGAACTCAAAATAATCTTTTTAGTTTTGAAATATATTAATTCCAAAACGTTCGCAGAGATATGGATGTTTTCTCATTTAGGTACATCGTTGGACTTTGTGCTAGTAAATTTGGGGAAGTTGGTGGTGCCATACCGTTGTGGCCATCATATATTATTAACAGTGTTGGATTTAGTTTTGCCACCCGCTTGAAATGTTTGTCATGTAAAATTAAGCTTTACTTGATTCTTCCACTGAGCTTCTCCCCCCAACTTGAACATTGGAGATGGATATGAGCTCTTAGTCAGGGATATAAATGATTTATTTGCTGCTTACTTATAGCTATATGAGGGAAAAGAAAAGAGTTAATACTCTATACTTAGAATGTTTGGAAGTAAGGAAAAAATATTTTATAGTTGGAACCTCAGCTCAGTGATTGTTATTATCACAGCAAAGTCTTATCTGATGTTGAAAAACTGCATGATGGAAGTGCTTAATTGTATGCTGTAATCGTCTATGGATGACTTGTTCGCTTTACACCCATGTCCAATACTCAGATGCTCCCATCATTCATTTTGAGTGGTTCAATTGGCTATACTATGCAGGCTTCCTTGAGGTTCTTGTTTGATCAGGTTTTTAGTTTTTTTCAGTCCTTTTTTAGGTGGTTGATTTTTTTTTCTCTAATGCAACTTTTGGAGATCGCTTAGTAATTTAAGTATACAGTCCTTTGTTATGTTCTTGCCACATGTAGTGAAATTTTATTAAGGAACAAAGCAATAGCTATGAGATTCTTTTGCTAGTGCGGAATACTAATATTTAAAAAAACTTGTTTTGCTTTCAAGTTGGGATCAGTAATAGTCAGTTTGATTTGTAATAATCATTTTGTGTGCTTATTTGAATTTTGATATTTGTTTCACAAATTTGGAACAGGGGACTGACTGGAGAGCGCACAGTTAAGAGATTGAGGCTGTCAAAAGCCCTTACAATACCTGATACTACAAGTATTTATGAAGCTTGCCGCAAGATGGCTGCTCGCAGAGTTGATGCTTTGTTGTTGACTGATTCAAATGCATTACTATGTGGTATCCTGA</genome_strand>
        <mrna_strand>GTTTCATCTTCCATCCGTAGGGTTCCCCTCCATCTCTCCGTCCACTCCTCGCCGGAAAATCTTCTTCCGGCAGTTGACACTTGAATCCACAGCGTTATCAATATTGTTCATATTTTTCTCCTATTTTTTCGGCTGAGGGCCGTCTTTTCCTGTATTCGACCGTTGACAATTTTATCCATCTCGTGGTTCCGTTGAAATCTCAAGTACAAGTTTTTTTATTGAATAATTTGATTGCTGTAGAGTTCAGATGCCGACGAGTCAAGGAGGAGGATCATCATCGAGGAGAAGCATATCGTTGACGAACTCTTCTTCACTTGCTAAGAAGAAAGCAGCAGCGGAAAATGAAGGAGTACAACCGGATTCTGCTCACCGGAAGTCGATTTCTGTATCTCGTTCTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACTGACTGGAGAGCGCACAGTTAAGAGATTGAGGCTGTCAAAAGCCCTTACAATACCTGATACTACAAGTATTTATGAAGCTTGCCGCAAGATGGCTGCTCGCAGAGTTGATGCTTTGTTGTTGACTGATTCAAATGCATTACTATGTGGTATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326859" ref_strand="+" ref_description="SGN-U326859        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:18040644-18041118 FORWARD | Aliases: T8P19.170(evalue: 3e-26, score=117) genbank/nr: gi|33327288|gb|AAQ09000.1| hypothetical protein [Phaseolus vulgaris](evalue: 1e-26, score=124)">
      <seq>caaaaccaaactattaactaaaaatatttttgttcaatttaacaaattttaagagcatttttaccattttccgtaaaaataagatagagtttcctaatccctaattttgtacaattacgattcacacaccacttcaattgactgctaaactactcttatacagtcagatctgttcctttcttttcacttttagtccaccttttttttttctctggatctttcgcttttatccccacacttttccccatttctttactctgttcaaatcaacgagctaattttccgattaacaatggcggactggggcccagttttgatagcggtggtgctgttcgtgttgttaactccgggtctactattccagcttcccggccgtggaaaaacggttgaattcgggaacatgcaaaccagcggcgtttccattttggtccatgcagtaatttactttggactcatcactatcttcctccttgccattggcgtccatgtctatgtcggctaaagtagtttttaccttcactatttattcaccatcatcatctgaatctcctctgtgggctggtggaacagttgctcatctgtggactgctggcaataattgctcaagcaataaggaaatctatggatcgagtgaagtaggactatagagagcaaaatggatcactgttcttggtcagtggaccccaaaggtggcgtcaacgtctgtgcggtgccaaatgtagtctttcatgctagcaatactagtttggagactttattattgttcttgaacacaagctttaccagccaacttgtttgacctttgaaacttttttctcatactcagtgttcgtcgtttcaggcatactcctgttagctcttcacgtttttggctaacacggaaaatcatacctttcttatttggtgttttgaccggcttgatcggagtattagctatatttctattaaccagtaaaaaagtagtgtcagaaatgagcttattgtgctgtgtctactctgtttcatgtatcttttctaatcaaatgttgttctcttggctagttctttaccgcagtataatttggtcataaataagtaaacaactcatgcctccttgttcttgaatgataaaggaagtcttcatcaccttttgttgatgctgattgtgaggtgactaaaattcactcacttatcaaagaaactcctaatctttgatttgttcgatttctcctggtgttcaactcggaattccaataaagatgtgtcgggattatgaaatagtgtcggagtcaaaattttgacttagagattcaaaatatgaagaagtagggttcggatgaaccccttgcttccacctagcttctgccctcgttatgaaatggaagaagttaataatgaggttccttgttcgctggttgatcaactatgtgtacagaatatgttgaaaatgaagtatagtaaaatgaactttaacctctcgatatataataaaactactggatattcaaatttgtttctcatatttttctccattgtaaaaaattatcactactttaacatttgttttccgctaccactatataatgcattggtccattatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46601" stop="50658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46901" g_stop="47425" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47426" i_stop="49302" i_length="1877">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49303" g_stop="50358" g_length="1056"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="1581" r_length="1056" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U326859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46901" e_stop="47425"/>
          <exon e_start="49303" e_stop="50358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCAAACTATTAACTAAAAATATTTTTGTTCAATTTAACAAATTTTAAGAGCATTTTTACCATTTTCCGTAAAAATAAGATAGAGTTTCCTAATCCCTAATTTTGTACAATTACGATTCACACACCACTTCAATTGACTGCTAAACTACTCTTATACAGTCAGATCTGTTCCTTTCTTTTCACTTTTAGTCCACCTTTTTTTTTTCTCTGGATCTTTCGCTTTTATCCCCACACTTTTCCCCATTTCTTTACTCTGTTCAAATCAACGAGCTAATTTTCCGATTAACAATGGCGGACTGGGGCCCAGTTTTGATAGCGGTGGTGCTGTTCGTGTTGTTAACTCCGGGTCTACTATTCCAGCTTCCCGGCCGTGGAAAAACGGTTGAATTCGGGAACATGCAAACCAGCGGCGTTTCCATTTTGGTCCATGCAGTAATTTACTTTGGACTCATCACTATCTTCCTCCTTGCCATTGGCGTCCATGTCTATGTCGGCTAAAGTAGTTTTTACCTTCACTATTTGTAAGTTTGTAACAATCTTCTCTCAGATCTTCATTCTCGCTTATAGAATAGTAGCAATTGATCTCTTCCGTTTTCGATTTCTTTATTTGCTACTACCAGATTGTATCGATTGGATGAACTGTTAATACTCGAAAAGCATTATGCACTGCTTCTCTAATTTTACCTTCACTTGGTGCATCATTATACACGATCATTAGATTCTCCAACAACAACAAGATACACAGTGAAATCGCACAAGTGGAGTAAGATTGTAAGCAGCACACCTTACTACTTCCTGTTGGGAGATAAGAGAGGCTGATTCTAAAACACCGCAGCAAATTCAATTACAAATAAGAAGAAAATGCTCTAGAAAACATAGCAACATTGAAAAACACAGTAAACAATTAGCAAATATTTTTTTAAAACTTGATATGGAATAATGGTCTTGCTTCAATTACTAAGAAAAAAAATTGAGCTAGTATCAGAGACAGATCTAGGATTTGAAGTTTATGAGTTCTTATAATGTGCTCAAGTTAATTTAAAGTGATAACTGGATTCACAATCAATTTTTGATAGATACTTTGTGAATTTTGTAATACAAATATAAGGTATGAACTAAAGTTACTGGGTTGCCAGGAACCCATACCTTAGGGCTAGATCTGCCCCTCTAGTATCCATCCAACAATCCGGATTGTGGAAAATATTTGGTATAATATCGAATCTCATTCATCCACAAGTATTTAAGATTTGTATGCTTTGCTGAATATTCTATAGTTCCCGAGTTTGAAACATTAGACTATACATGAAGGAGAATGACTTGTGGTCAATGTAAAGATTTTGTTTTTATTTTGCCACTGTTTGATATTACCTCGGCCTTTATGAGATAAGCAAAGCATAACTATGATAAATATGCTCAACTGGAAACAAAGGATTGGACTAGCCGGTCCAACTAATTTGAGATTGAAGAGTAGTTGATTGATTGTTAGCGCTGAATATTGTTTGCCTTTAACTAACACTTCATTGTTCAATGGTCAAGCCATTCGATTGGTGTATTTCCACTTCTCTTGCTATACACTTTTCCTTTTTTTTTCCTTGTTTGAATCTTCAATCATATCGTATAGATCTAGAATTTAACTCTTGCCTAATAGAGAATGGGCATGACCCTTCCATGTTCTATCATCCAACGGACGGACTATTTTGAGTTCTATATGTAGGTTAGGTTGTATCAGTCACATCTGACTCTGCTTGTAGTTTCAAGTTCACATGTCGTACTAGAAAACAGGGGCTAGTGTTTGCAATGGTGACATTTCCTGATGTTGCCTTCTTTCTTCGAGGATGAAATGAAGAAAAGCTGTCAGGTTGAAGAAATGTAATGAAACTCACAATAGCTACCAACTCCCCTTTAACTTCCTCATACAACATGTTTGTCTGAATACTAGCAGCAGGCCTCCCATGAGTCTGTTCTCCATGGGGATTGCCATAAGATACCTCCATGCTAACATTCTATATGCCTCAGTACCTTTAACACCACTCACTAATATATCATGCCTTTTTAAGTTAAACTACTCTCACTTCGCGAGTTAATTTTACATAAGGTCACCAACCTCATTATAATAGTTAAATGCAAAGCTTTTTATTTTCACATTGAAGTATGTGAATTGCTCAAAATATCACAACTGACCAGGAGGTCAAATATTCAGAATCAGGTTATGACAAGTCACTTGCAGTATCATTTTTTACTACCTATAATTTAAACAATAGATAGTTGCAATAGCATTTCTAATTCCGTAACCCCCCCCCTTCCCTTTCTCTATCACACAGACAACTCTAAAAACTGAAATGGGGATACTCATTCGAGTTTCTAGAAGATCCTTAGAATATCTACTCTCTCTTCTCAGATTCACCATCATCATCTGAATCTCCTCTGTGGGCTGGTGGAACAGTTGCTCATCTGTGGACTGCTGGCAATAATTGCTCAAGCAATAAGGAAATCTATGGATCGAGTGAAGTAGGACTATAGAGAGCAAAATGGATCACTGTTCTTGGTCAGTGGACCCCAAAGGTGGCGTCAACGTCTGTGCGGTGCCAAATGTAGTCTTTCATGCTAGCAATACTAGTTTGGAGACTTTATTATTGTTCTTGAACACAAGCTTTACCAGCCAACTTGTTTGACCTTTGAAACTTTTTTCTCATACTCAGTGTTCGTCGTTTCAGGCATACTCCTGTTAGCTCTTCACGTTTTTGGCTAACACGGAAAATCATACCTTTCTTATTTGGTGTTTTGACCGGCTTGATCGGAGTATTAGCTATATTTCTATTAACCAGTAAAAAAGTAGTGTCAGAAATGAGCTTATTGTGCTGTGTCTACTCTGTTTCATGTATCTTTTCTAATCAAATGTTGTTCTCTTGGCTAGTTCTTTACCGCAGTATAATTTGGTCATAAATAAGTAAACAACTCATGCCTCCTTGTTCTTGAATGATAAAGGAAGTCTTCATCACCTTTTGTTGATGCTGATTGTGAGGTGACTAAAATTCACTCACTTATCAAAGAAACTCCTAATCTTTGATTTGTTCGATTTCTCCTGGTGTTCAACTCGGAATTCCAATAAAGATGTGTCGGGATTATGAAATAGTGTCGGAGTCAAAATTTTGACTTAGAGATTCAAAATATGAAGAAGTAGGGTTCGGATGAACCCCTTGCTTCCACCTAGCTTCTGCCCTCGTTATGAAATGGAAGAAGTTAATAATGAGGTTCCTTGTTCGCTGGTTGATCAACTATGTGTACAGAATATGTTGAAAATGAAGTATAGTAAAATGAACTTTAACCTCTCGATATATAATAAAACTACTGGATATTCAAATTTGTTTCTCATATTTTTCTCCATTGTAAAAAATTATCACTACTTTAACATTTGTTTTCCGCTACCACTATATAATGCATTGGTCCATTATCA</genome_strand>
        <mrna_strand>CAAAACCAAACTATTAACTAAAAATATTTTTGTTCAATTTAACAAATTTTAAGAGCATTTTTACCATTTTCCGTAAAAATAAGATAGAGTTTCCTAATCCCTAATTTTGTACAATTACGATTCACACACCACTTCAATTGACTGCTAAACTACTCTTATACAGTCAGATCTGTTCCTTTCTTTTCACTTTTAGTCCACCTTTTTTTTTTCTCTGGATCTTTCGCTTTTATCCCCACACTTTTCCCCATTTCTTTACTCTGTTCAAATCAACGAGCTAATTTTCCGATTAACAATGGCGGACTGGGGCCCAGTTTTGATAGCGGTGGTGCTGTTCGTGTTGTTAACTCCGGGTCTACTATTCCAGCTTCCCGGCCGTGGAAAAACGGTTGAATTCGGGAACATGCAAACCAGCGGCGTTTCCATTTTGGTCCATGCAGTAATTTACTTTGGACTCATCACTATCTTCCTCCTTGCCATTGGCGTCCATGTCTATGTCGGCTAAAGTAGTTTTTACCTTCACTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACCATCATCATCTGAATCTCCTCTGTGGGCTGGTGGAACAGTTGCTCATCTGTGGACTGCTGGCAATAATTGCTCAAGCAATAAGGAAATCTATGGATCGAGTGAAGTAGGACTATAGAGAGCAAAATGGATCACTGTTCTTGGTCAGTGGACCCCAAAGGTGGCGTCAACGTCTGTGCGGTGCCAAATGTAGTCTTTCATGCTAGCAATACTAGTTTGGAGACTTTATTATTGTTCTTGAACACAAGCTTTACCAGCCAACTTGTTTGACCTTTGAAACTTTTTTCTCATACTCAGTGTTCGTCGTTTCAGGCATACTCCTGTTAGCTCTTCACGTTTTTGGCTAACACGGAAAATCATACCTTTCTTATTTGGTGTTTTGACCGGCTTGATCGGAGTATTAGCTATATTTCTATTAACCAGTAAAAAAGTAGTGTCAGAAATGAGCTTATTGTGCTGTGTCTACTCTGTTTCATGTATCTTTTCTAATCAAATGTTGTTCTCTTGGCTAGTTCTTTACCGCAGTATAATTTGGTCATAAATAAGTAAACAACTCATGCCTCCTTGTTCTTGAATGATAAAGGAAGTCTTCATCACCTTTTGTTGATGCTGATTGTGAGGTGACTAAAATTCACTCACTTATCAAAGAAACTCCTAATCTTTGATTTGTTCGATTTCTCCTGGTGTTCAACTCGGAATTCCAATAAAGATGTGTCGGGATTATGAAATAGTGTCGGAGTCAAAATTTTGACTTAGAGATTCAAAATATGAAGAAGTAGGGTTCGGATGAACCCCTTGCTTCCACCTAGCTTCTGCCCTCGTTATGAAATGGAAGAAGTTAATAATGAGGTTCCTTGTTCGCTGGTTGATCAACTATGTGTACAGAATATGTTGAAAATGAAGTATAGTAAAATGAACTTTAACCTCTCGATATATAATAAAACTACTGGATATTCAAATTTGTTTCTCATATTTTTCTCCATTGTAAAAAATTATCACTACTTTAACATTTGTTTTCCGCTACCACTATATAATGCATTGGTCCATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341561" ref_strand="+" ref_description="SGN-U341561        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SUMO activating enzyme, putative, nearly identical to SUMO activating enzyme 1b (Arabidopsis thaliana) GI:22652852; nearly identical to At5g50680; contains Pfam profile PF00899: ThiF family | chr5:20602575-20604821 FORWARD | Aliases: None(evalue: 9e-120, score=427) genbank/nr: gi|3647283|emb|CAA09619.1| ubiquitin activating enzyme [Lycopersicon esculentum](evalue: 5e-179, score=630)">
      <seq>ccttatgatgtgccagattatgcctctcccgaattcggcacgagaaacaattgatgcttagttctcgtctgataaacaatttttttcctcggtttctctcacagtgttgcaatgggaaaagtaggtgaggaattgacagagcaagaaactgccatatatgatcgccaaattagggtttggggtgttgatgctcagcgaaggttgagcaaatctcatatatttgtcagtggactgaaagggactgttattgagttctgcaagaacattgtcttagccggagtcggtagtttgacgctaaatgatgatcgacttgtaacagaagagctactgtctgctaattttttagttccttctgatgaaaatgtgaccagtgggaaatcacttgctgagctttgttgtgaatcactgaaagatttcaaccccatggttactgtttctgttgaaaaaggtgttctggccaacttccatgttgaattctttcagaagtttgatgctgttgtcatcagttgctgctcgctgctgacaaaaaaatcggttaatgcaaagtgtcgcaagttgccaagacgtgtcgcattttattctgtagaatgccgagattcctgcggtgagatatttgttgacttgcagagctactccaagaaaaagaatgaagaaacaattgaatgccaactacagtatccgagttttgaggaagccattgcagtcccgtggagatctctacccaagagaatgtcaaagctatattttgccatgagagttctagagaggtttgaagtgcttgaaaagcaaaatcctcaagatacttccggagatgaccttccaaatgttctgaaattgaggaaggaactttgtgaggcacagtgcataaatgaatctcagatcccggttcctctcctgcaaaggttgttagcagctagagttgaatttccttcagtttgtgccattataggaggagtccttggacaggttataaaagcaatatctggaaaaggtgatcctcttaaaaactttttcttgtttgatgccatggatggcaaaggaataatagaggacatatcaggataatcagtggcttgtggtaaaaattctttatattaatgctaaccttatttgtggatttgtctcctattggatgaactttcactatgtaattactccactaaccatatgttatctcactgatatgacttagttgagctttttgagtgttaatctgttgcactttggttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59626" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59323" g_stop="59262" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="105" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59261" i_stop="59027" i_length="235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59026" g_stop="58932" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="200" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58931" i_stop="58548" i_length="384">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58547" g_stop="58496" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="252" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58495" i_stop="58236" i_length="260">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58235" g_stop="58040" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="448" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58039" i_stop="57625" i_length="415">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57624" g_stop="57545" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="528" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57544" i_stop="57442" i_length="103">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57441" g_stop="57331" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="639" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57330" i_stop="57091" i_length="240">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57090" g_stop="57040" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="690" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="57039" i_stop="55803" i_length="1237">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55802" g_stop="55736" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="757" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55735" i_stop="55032" i_length="704">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55031" g_stop="54928" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="861" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54927" i_stop="54842" i_length="86">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54841" g_stop="54737" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="862" r_stop="964" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="54736" i_stop="54650" i_length="87">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="54649" g_stop="54379" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1233" r_length="269" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1234" polyA_stop="1256"/>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U341561" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1194</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59323" e_stop="59262"/>
          <exon e_start="59026" e_stop="58932"/>
          <exon e_start="58547" e_stop="58496"/>
          <exon e_start="58235" e_stop="58040"/>
          <exon e_start="57624" e_stop="57545"/>
          <exon e_start="57441" e_stop="57331"/>
          <exon e_start="57090" e_stop="57040"/>
          <exon e_start="55802" e_stop="55736"/>
          <exon e_start="55031" e_stop="54928"/>
          <exon e_start="54841" e_stop="54737"/>
          <exon e_start="54649" e_stop="54379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAATTGATGCTTAGTTCTCGTCTGATAAACAATTTTTTTCCTCGGTTTCTCTCACAGTGTAAGCTCTCTCCTTTGCCTGTTCTTTCACTTCTTCTCTTTGTTTTGCTTATAAATTGCTTTGATTAATGCACCAAAAAATTGCTTTTTTTAAGAGATTTAGTTTGTTTGCTTAGTTCAATTTCAGTAGGAGCTTCGAGGAAGATGGACAAAGATGAACTGAGAATTGAGCTATAAGTTTGTGGATATTGTGTTTGTTTCTTCACTTAGTATGTTTTTTTTTGCTGAAATTATAGGTTGCAATGGGAAAAGTAGGTGAGGAATTGACAGAGCAAGAAACTGCCATATATGATCGCCAAATTAGGGTTTGGGGTGTTGATGCTCAGCGAAGGTATTCTTCTTCACTCATTTTTGTGATTTTACACAGGCAACCAGTATGATAATGCATCACAAACACATTGTTGTTGAGGATAGATGTTTACTTTACATACATGTGTATGAGCTTGGTGTCCTTAGTATCAATAGTGGAACCAGGGTTTTCATGTGCTTATGGCAAGTAATTTTTTTGTTATGAAGGAAGAGGGACATCCATGTCCTGTGGTTCACTTGAAGGGAAAATGGAATGTGTGCTCATCCTATGACTTACTTTTACTTTTAAAAGCAGTATTCTAACTTCAAGGGAATGACATATACAATATTTTAGTTAGATATCTAGTAGACCCATCTAGTTCTTTCATTTTTATAAAAGATTCTACTATCTTCTTATTTGTGTCAGGTTGAGCAAATCTCATATATTTGTCAGTGGACTGAAAGGGACTGTTATTGAGGTACAAAACTACCAGTTAATCACTTTTTGAAGTAAATGTTTATTGCCATATTTGTTATTATGTTTATTTATCAATAGAACTTTTCTGTCGTTTGTTATTGATGGAATTGGATTATGTCCAAAGCATAAACTGTATACATCATGCTTCTTGGCCCTTTGATAGGATAAGTTTCAATATAATATTTTCAGTTCCAGATGCTAAATTCAAAATGAGCAACTTCAGATTATATTAACTTCTTTTTTCTCCTTTTTCTTTCCCAGTTCTGCAAGAACATTGTCTTAGCCGGAGTCGGTAGTTTGACGCTAAATGATGATCGACTTGTAACAGAAGAGCTACTGTCTGCTAATTTTTTAGTTCCTTCTGATGAAAATGTGACCAGTGGGAAATCACTTGCTGAGCTTTGTTGTGAATCACTGAAAGATTTCAACCCCATGGTTACTGTTTCTGTTGAAAAAGGTTTGGATCTGTTTGTACTATAATTTATTTACAAACTCTTTAACCTGCATAGTTCCTCTTAACTCATCAAACACCAGTGCATTTCCGCTTTTTGTCGTTCTTTGATCTTGTAATGATTTCGTAAGTTGGCTTAATTTTCCACTTATTTTTGTTTTTTCCTAACACATATAACTGTTATGCATATTATGCTTATCAGATAGTTAACTCTTTTTATACTCTCAAATCATATAAAAAGGTGCATTAAGAAAGTTCCTAACATTTCACTTCCGACTCGAGTTCTTAGCTATATCTCTATTGGGTTTTGATGATATGCAGTGTCAGGTGCATGTTAAGCACCTTATATCTATTTCTCAGAATCAGATTGTGTCAATGCATCAAAGATTTCATTTTTATGTCTCATATGCTCTATTTTTAGGTGTTCTGGCCAACTTCGATGTTGAATTCTTTCAGAAGTTTGATGCTGTTGTCATCAGTTGCTGCTCGCTGCTGACAAAAGTATGGACATTCTTCTTGCTTGTTGAAAATAAATAAGAGGATTTTTCCAATGAAAATACCAGTTTTTTTTATGATTTTAATTTTGATAATGCTCCCTATGCAGAAATCGGTTAATGCAAAGTGTCGCAAGTTGCCAAGACGTGTCGCATTTTATTCTGTAGAATGCCGAGATTCCTGCGGTGAGATATTTGTTGACTTGCAGAGCTACTCCAAGGTTACAACAATATTTATATTTTTTATAGTCCCCTTCTTTTTCAGTTGGATTTCATCCTTAGATAGAGTGTCTCCATGTTTAATGATTATACAGCTTGAGTTATCTTCTTTTGACCCTTTTCTTCAGTTCAATCTAGTCCTTTCCACACATAGGTGTACCTTTTATCTTGAGGGCCTATATCTTGTGTATCATATTGCTAGATCTGATGAATCTCTTAAATCCCTTCTTATGCTTCTGCAGAAAAAGAATGAAGAAACAATTGAATGCCAACTACAGTATCCGAGTTTTGAGGTATGCTGCATCAAAGTATCAAAAAAGAACATTTGGTCCTGTTTAGCTGCTGTGCTGTTTTACTCAACTGTATCGATGAGATTATACTCTTATCTGTATTTTTATTTTTAAGATAGCAGTCTCAGCAAATATCAGATAAGTCGAAGTCATCATCCCTATGGCTGGTTTTCCACCTAAGTTAATGACAACATATCTGCTTAGTGGATATCATATGTATGCTTATGAATAATAGGTGATTGCAGCTGTCACTTATTGTTTCATATTTTATAGCTGAAACCGTATGGATCTCTGTATGTTGTTTCTAAACAGATCAATTTGCTTCAGTCCAGCTGCATGGTGGTTTATATCATTGCCTAACGTCTGTGATGTTTTCAAACATGAATTTCCCATTCAATTTGTGGCAGCACAGCTTTTTGATTTTTTCTTTAAGTACCTTGTTTTGGCACTATTCAAAGTCTGATGGATGATATTCATCTGCTTAACATCCTAACATATATGTGGTAGCTTTGAAGCTTGTCACCAGTATCTGGCAGCTTTTAAATGGCAACACTTAGCTGCCTATGTGATTGTCTACACTCTGTAGAGTTGGGCAAAGTTTTTGGTGAGTGTAACCTTCTCATTTCGAAGTAACAAGAGCCTCCTAACGATCTGCCTATATATAGTAGTTCAAGGAAAGAATTGATTCGACCTAGAGACAACATCCTTGCAATTTGCATTATTAGTTCCCTTGGTTAACACCTCAACACCTGCTTGGTAGGGTTCTTAGGTGCATTGTGTTTCATCACTTCCATTTTCTTCACAACCATCACCAGACATCAAATAATCCACCTTAGCATGTAACAATGTCCAGTATCAGCATGATGAAGTCCTGCAACACCAGTTCAGGCATCACTGAAGACATAATGATTGCATTTAGATTTAAAACCTTAAGGGATTTCACAGTCCCAAAAAAAATAATAGACCATTTTGTTTGGAATTCCTTGGAACAGGTACACGTTTAAAGGCATAATATTCTATAAGGAGAGGCAACAGTGTAACATATGCTAAATATTCTTGTAATCCCCTTTAGCATTCAAAATTAGATAAGAAGGCTTGAAAAAAACAAACATATAGCTGGTCTTTCCGGGATTTACTAAATCGTGATGGTTTAACCTGAAGTTAATAAGGTTTCTCTGTTCCAGAGTATTTCATCAGATTTTCATTTCAAATGGCGATTGCCTTACCTACACTTCTGCAGGAAGCCATTGCAGTCCCGTGGAGATCTCTACCCAAGAGAATGTCAAAGCTATATTTTGCCATGAGAGGTACTCTATTTCTCAGGTTGTTGTAATTTCTTATGCAGATTTAAAGATGCTCTATAAATCCACTTTTGCTATCTGGTGTGTGAATGTCGATGTGAATTTCCAGCTATATAGTTACAAGAACAGGAGAGATCAGTGGGTTGCAGTCAAACCAATCGCTATGTGACATGTCTAAGTTCTCTGGATCTTTGCTTCGACTTTGATATTAGGAATGTAGAACATGAACCAATGCGCTCACTTTTAGAGAGGATCCAGCACTATTTCCTGGTCTCCCCCTTCCCGCAACCACCATTCTTCTAATCTACAAGCTCATATTACAAGATAACTGCCTATTTCTGGTGTTCAAATTCCAATAGCTTGCTGCAAAAGGCATCAATTACCAATGAGAATATGACGGGGTGCTTTCCAGAATTATGATTTTTATGTTCTTCCACACATATGATAGATGTGGCCTTCTGAAATTACAAAATTATATTATCTGTGGTGATTATAGTTAGTGGTAACAATCTAGGTAATATTCCATTTTTCGGTAGCCTGGACCCCAAAAATAATTTAAGTAGCCATCTTGGTGTTGGTTTTGCTGAAATTATTATGGTGACAATGTTATAGGAAGCCCACTAATTTACATTTTGATGCATACCTTAAGTGCAACAGTAAATTTACTCAAGTGTCTTGTCCTTGACTTGTGGACTGGTAATTCTTTGCAGTTCTAGAGAGGTTTGAAGTGCTTGAAAAGCAAAATCCTCAAGATACTTCCGGAGATGACCTTCCAAATGTTCTGAAATTGAGGAAGGAACTTTGTGAGGCACAGGTATATTCCAGAGTTCGAAATGCACAAATATATTAATGTAATGCATCACCTGCAAGTCCTTGACGAAACTGCCTCTTGATTTGCAGTGCATAAATGAATCTCAGATCCCGGTTCCTCTCCTGCAAAGGTTGTTAGCAGCTAGAGTTGAATTTCCTTCAGTTTGTGCCATTATAGGAGGAGTCCTTGGACAGGTGATTATGCTGCTGTCTTGTTCAAAAATACTATTGGCACCTCTCGACTTTTTCGCTTATGTGTTCCTTTTATTTTTATCCTTATAGGAGGTTATAAAAGCAATATCTGGAAAAGGTGATCCTCTTAAAAACTTTTTCTTGTTTGATGCCATGGATGGCAAAGGAATAATAGAGGACATATCAGGATAATCAGTGGCTTGTGGTAAAAATTCTTTATATTAATGCTAACCTTATTTGTGGATTTGTCTCCTATTGGATGAACTTTCACTATGTAATTACTCCACTAACCATATGTTATCTCACTGATATGACTTAGTTGAGCTTTTTGAGTGTTAATCTGATTGCACTTTGGTTAAAC</genome_strand>
        <mrna_strand>GAAACAATTGATGCTTAGTTCTCGTCTGATAAACAATTTTTTTCCTCGGTTTCTCTCACAGT...........................................................................................................................................................................................................................................GTTGCAATGGGAAAAGTAGGTGAGGAATTGACAGAGCAAGAAACTGCCATATATGATCGCCAAATTAGGGTTTGGGGTGTTGATGCTCAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCAAATCTCATATATTTGTCAGTGGACTGAAAGGGACTGTTATTGAG....................................................................................................................................................................................................................................................................TTCTGCAAGAACATTGTCTTAGCCGGAGTCGGTAGTTTGACGCTAAATGATGATCGACTTGTAACAGAAGAGCTACTGTCTGCTAATTTTTTAGTTCCTTCTGATGAAAATGTGACCAGTGGGAAATCACTTGCTGAGCTTTGTTGTGAATCACTGAAAGATTTCAACCCCATGGTTACTGTTTCTGTTGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTGGCCAACTTCCATGTTGAATTCTTTCAGAAGTTTGATGCTGTTGTCATCAGTTGCTGCTCGCTGCTGACAAAA.......................................................................................................AAATCGGTTAATGCAAAGTGTCGCAAGTTGCCAAGACGTGTCGCATTTTATTCTGTAGAATGCCGAGATTCCTGCGGTGAGATATTTGTTGACTTGCAGAGCTACTCCAAG................................................................................................................................................................................................................................................AAAAAGAATGAAGAAACAATTGAATGCCAACTACAGTATCCGAGTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCATTGCAGTCCCGTGGAGATCTCTACCCAAGAGAATGTCAAAGCTATATTTTGCCATGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGAGAGGTTTGAAGTGCTTGAAAAGCAAAATCCTCAAGATACTTCCGGAGATGACCTTCCAAATGTTCTGAAATTGAGGAAGGAACTTTGTGAGGCACAG......................................................................................TGCATAAATGAATCTCAGATCCCGGTTCCTCTCCTGCAAAGGTTGTTAGCAGCTAGAGTTGAATTTCCTTCAGTTTGTGCCATTATAGGAGGAGTCCTTGGAC--.......................................................................................-AGGTTATAAAAGCAATATCTGGAAAAGGTGATCCTCTTAAAAACTTTTTCTTGTTTGATGCCATGGATGGCAAAGGAATAATAGAGGACATATCAGGATAATCAGTGGCTTGTGGTAAAAATTCTTTATATTAATGCTAACCTTATTTGTGGATTTGTCTCCTATTGGATGAACTTTCACTATGTAATTACTCCACTAACCATATGTTATCTCACTGATATGACTTAGTTGAGCTTTTTGAGTGTTAATCTG-TTGCACTTTGGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338476" ref_strand="+" ref_description="SGN-U338476        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:6131060-6135338 REVERSE | Aliases: F2H15.5, F2H15_5(evalue: 4e-07, score=52) genbank/nr: SJCHGC09205(evalue: 5e-06, score=54.7)">
      <seq>tacacctactcagaaatttgcacaaatcaaggatcatcatctcgtatttacagagtcagatggttcccatgtagaaattccactgaaaggttgcataatagcagctgtttcagcgtcaagcttgtccactagaaaatggtaagtttggaagtactattatatattgaagtgatttttgttgaaccgacaaactgtattaattttggtcgtgtaagttggtttgagtcattggtttcaaatataaaatcattggcaagatgtggcactcgtaggcctcttctaacatttttatgaatatagttttggaggcatcagatctggaaagagctatctagttctagctgcaattgagttataagctatgtcctttgtcatgtggtgctggtggtataaaagcttgggcagacataaatatgagtgcaaagcattcttcttagtcaagtctgaattgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70805" stop="71859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71105" g_stop="71559" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U338476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71105" e_stop="71559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTACTCAGAAATTTGCACAAATCAAGGATCATCATCTCGTATTTACAGAGTCAGATGGTTCCCATGTAGAAATTCCACTGAAAGGTTGCATAATAGCAGCTGTTTCAGCGTCAAGCTTGTCCACTAGAAAATGGTAAGTTTGGAAGTACTATTATATATTGAAGTGATTTTTGTTGAACCGACAAACTGTATTAATTTTGGTCGTGTAAGTTGGTTTGAGTCATTGGTTTCAAATATAAAATCATTGGCAAGATGTGGCACTCGTAGTCCTCTTCTAACATTTTTATGAATATAGTTTTGGAGGCATCAGATCTGGAAAGAGCTATCTAGTTCTAGCTGCAATTGAGTTATAAGCTATGTCCTTTGTCATGTGGTGCTGGTGGTATAAAAGCTTGGGCAGACATAAATATGAGTGCAAAGCATTCTTCTTAGTCAAGTCTGAATTGATCT</genome_strand>
        <mrna_strand>TACACCTACTCAGAAATTTGCACAAATCAAGGATCATCATCTCGTATTTACAGAGTCAGATGGTTCCCATGTAGAAATTCCACTGAAAGGTTGCATAATAGCAGCTGTTTCAGCGTCAAGCTTGTCCACTAGAAAATGGTAAGTTTGGAAGTACTATTATATATTGAAGTGATTTTTGTTGAACCGACAAACTGTATTAATTTTGGTCGTGTAAGTTGGTTTGAGTCATTGGTTTCAAATATAAAATCATTGGCAAGATGTGGCACTCGTAGGCCTCTTCTAACATTTTTATGAATATAGTTTTGGAGGCATCAGATCTGGAAAGAGCTATCTAGTTCTAGCTGCAATTGAGTTATAAGCTATGTCCTTTGTCATGTGGTGCTGGTGGTATAAAAGCTTGGGCAGACATAAATATGAGTGCAAAGCATTCTTCTTAGTCAAGTCTGAATTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316115" ref_strand="+" ref_description="SGN-U316115        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, identical to SP:P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana} | chr3:1080960-1083537 FORWARD | Aliases: T6K12.26, T6K12_26(evalue: 2e-159, score=559) genbank/nr: gi|4539543|emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum](evalue: 1e-162, score=576)">
      <seq>tcggccgaattttaaaacgaactccattttccttctcagttcacaaaaaaaaatcatgggcaagattaagatcggaatcaatggttttggaagaattggccgattggtggccagggtggctctacaaagagatgatgttgagctcgttgctgttaacgatcccttcatcaccgtggaatacatgacatacatgtttaagtatgacagtgttcacggtcaatggaagaacaatgagctcaaggttaaggatgagaagactcttctctttggtgagaagcctgttactgtatttggcataagaaacccagaggaaatcccatgggctgaggctggagcagagtacatcgtggagtcaactggagtcttcactgataaagacaaggctgctgcccacttgaagggtggtgctaagaaagtagttatttctgctcctagcaaggatgcacctatgtttgttgttggtgtcaatgaaaaggaatacaagccagacctcaacatcgtttctaatgctagctgtactactaactgccttgcacctctggcaaaggttattcatgacaggtttggaatcgttgagggtcttatgactacagttcactccataactgccacccagaaaactgttgatggaccatcagctaaggactggaggggaggaagagctgcatcattcaacattatccccagcagcactggagctgcaaaggctgttggaaaggtgctaccatcattgaatggaaagttaacaggaatgtctttccgagttccaacagtcgatgtctctgtggttgatctcactgtgaggttggagaaagaagccacctatgatgaaatcaaggctgctatcaaggaggagtctgaaggaaaattaaagggaattcttggatacactgaagatgacgtggtatctacagactttcttggggacaacagatcaagtatctttgacgccaaggctggaattgctttgagcaagaactttgtgaagcttgtttcttggtatgacaacgaaatgggctacagcacacgagtggtcgacttgattaagcacatggcatcagtccagtaaagtggcagttccgagtatgatggtgcgttactgagcatatttagaagaggaaaaaagctttagaataaagtaaaatgagaagctgtttgacgagtttggaggtggctgtctgtttactattgtattttcatttggggtctcttgttggattgttgttttccccaattttcaaatgtgtctgcaaaactgtctggatatgttgttttgtcttgctatcaatgtataataacgttggacccgcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77132" stop="72700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76832" g_stop="76785" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="59" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="76656" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76655" g_stop="76632" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="83" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76631" i_stop="76513" i_length="119">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76512" g_stop="76412" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="184" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76411" i_stop="75505" i_length="907">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75504" g_stop="75389" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="300" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75388" i_stop="75302" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75301" g_stop="75202" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="400" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75201" i_stop="74662" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74661" g_stop="74515" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="547" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74514" i_stop="74428" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74427" g_stop="74367" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="608" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74366" i_stop="74293" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74292" g_stop="74052" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="849" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74051" i_stop="73783" i_length="269">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73782" g_stop="73699" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="933" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="73698" i_stop="73521" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="73520" g_stop="73431" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="934" r_stop="1023" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="73430" i_stop="73288" i_length="143">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="73287" g_stop="73003" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1308" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1311" polyA_stop="1331"/>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U316115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1297</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76832" e_stop="76785"/>
          <exon e_start="76655" e_stop="76632"/>
          <exon e_start="76512" e_stop="76412"/>
          <exon e_start="75504" e_stop="75389"/>
          <exon e_start="75301" e_stop="75202"/>
          <exon e_start="74661" e_stop="74515"/>
          <exon e_start="74427" e_stop="74367"/>
          <exon e_start="74292" e_stop="74052"/>
          <exon e_start="73782" e_stop="73699"/>
          <exon e_start="73520" e_stop="73431"/>
          <exon e_start="73287" e_stop="73003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAACGAACTCCATTTTCCTTCTCAGTTCACAAAAAAAAATCATGGGTATATCATCAGTTATCCTTTCTTTACTTGTTCTTCAATTTCTTTTTCTGCATGTATCATCATACGTTATACTTCACGGGCTTTAACTAATTCCATTTTTTCCATATCTTCTTTTGTAATTTTTTGCAGGCAAGATTAAGATCGGAATCAATGGTATATAATCTGTTGTTTTTGTCTCGTGAATTTGTTAATTTAGTGTGTTTTTCTGAATTTTCATGAAATTACTTTTTGGTTTTGGCTAAGATCGGTTTCGAATGTTGTTTTGTTTGTAGGTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATGGTAACATGGCAATTAATGATAGTTTATGAACTATGAATTAAGCTTTAATGTCAGTTTAGTTTGGGTTGATTATATGTTTTAGTTCATTTAGTTCATAAAATTGTAGTATTTAGACAATTTTATCATAATTAGACTATTTTCACATGTTATAGTTAATTACCATGATTTTTTATGAGTTAACGGTACAAAATACACTTAAATGTGTCCAAGTTTTTTGAGTTTTCTATCGGAACTATCATGTGTGTGTTTCACAAACTGTTATCAAAACACACATGAACTATCATTGTTGAGTTAAATACCTGAAATTTCAGGTAGGAAAAGTGAACTCATAGTTCAGGTGTGTTTCGATAAACATTTGGTGAAAGTTCAAGTAGGAAATTCACAGCGTGTCGGAAGCTATTACAAAATGTTATCAAAACACATGAACTATCATTGTTTGAGTTTCATACCTGAAATTTCAGGTGGGAAAAGTGAACTACTCATAGTTCTGGTGTGTTTCGATAAATGTTTGGTGATAGTTCGAGTAGGAAAATCACACATGATAGTTCAGGTAGGAATCTCAAAAAATTGGGATACTTTTAAGTCTGTTTTTGATGATCAGTGCACCTCAGTCATTAAAAAAGGGTTGTTTTTGACCCTGTAATTCTTTTTTCTTTGGCTGTTTCTTAGTTCTTCACTTTCCAGAAGTGTTGGGTCAAAGACAGCACTTTTCCTTTATTTATGCTTTGCGAAATTCACATAGTGATATTCAGTAGTAACAATATCAGTAGATCTGTTGTTTTCTGGGGCTTTAAGTCGATGGGGATTGTATATGATGATTGTTGCAGACATACATGGTCATGTGTAAGTTTACTGTTATTATTTGAGGGGTTAAGTTGATGGGTATTGTATATGATGCTTGTTGCAGACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAGGTAAATTATGTCTCCAACTTTTCTTTATTATATGAAAAACTGCATTAGAATTTCTCTTGATTGGACTTATTGTATGGATGTCTGAAGAAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAGGTTTGTGATCCTAAATAACTAGAGCGTTCTTATTTTGGCTTACTGTTTGTAGCTAATATTGATTTTTCAAAGTACATAGTTTGACACTCCAACATATAATCCCCCATGGCCTGAACACTTGGTGCCTGAAACCATGTAGCGAACTTTGTTTGCATTTTTTCTTTTGTACATGTTTATGTATGCATTTGTTAGTGAAGGTGCTATTCTGAGGCTTTACTCATGTACTTTTGTTTTCTTCTCCTGTCTAATCAAACTTCTGTGGAAACTTAAGGACAGAGTATGCTGTCATCTTGAAAGCAATTTAAAACTTCTCTATGTATTTTCTCGACAGGAGTCTAGGTGTTGCAGTACGCTGTTTGTATTGTCTCTATATTAGTTTTTTTTAAAATGTAAATTGATGCTAATGCGATGATGTTTGGGTGTTGACTACTTGGATTGATATGGTTATCACGTATTTCCTTGCACATTAGCTTGATTACCTGCATTGAATAGTTGGTGTTGAGTACCTGCTTAAATTTTTTTGGTTGTTGTTATTACCAGGGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAGGTTCCCTTTTTTTTCTTTTGCCCTGTTCTTCATTTTAGTATTTGAGCCTATATGTGAATTTAAATGATTTCTTTTATGACTTTGCAGGTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTGGTAAGTATTGCTTTATGCATTAGAAGTTAATACAGCTTCTGTAGCTTGAGTACTAAGTAATTATTTTATAACAGCCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGGAGGAAGAGCTGCATCATTCAACATTATCCCCAGCAGCACTGGAGCTGCAAAGGCTGTTGGAAAGGTGCTACCATCATTGAATGGAAAGTTAACAGGAATGTCTTTCCGAGTTCCAACAGTCGATGTCTCTGTGGTTGATCTCACTGTGAGGTTGGAGAAAGAAGCCACCTATGATGAAATCAAGGCTGCTATCAAGTAAGACTGTGCACTTTATTCCTTTACCCATTCCCATTCCCCTTCCCCTTCCCCTTCCCCCCTTCCCTGTAAGAAATACAAAAGTTCTGTGCTTCATTCAGTTCTGGCTAGTATTAGACTACAGGTTTCCATGGATGCAAAATACATGCAAAAAAAGGAGTCATAGTGCTGGGTGAAATAGTAGAAAAGGCCCTAGGGCTACTCAACTTGTTTTAATAGCTGCTCATTTACATTAATATGCTTTTTTTTTTGCTTTGGCATTTCATTAGGGAGGAGTCTGAAGGAAAATTAAAGGGAATTCTTGGATACACTGAAGATGACGTGGTATCTACAGACTTTCTTGGGGACAACAGGTGAGGATGTATTTCGAAGTTATGTTCCATATTATGTCTGACTCACAACAACAAATGTCTATTGCTTCTGCCAATGCATTTTCCCTGTAAATTCCTATTCCTTTGTTAACCGACCCTGCGTGAACCAGACTAGACAGCCTAAGTGTTAATTTGTAATTCAAATGAAAATAATTTGCAGATCAAGTATCTTTGACGCCAAGGCTGGAATTGCTTTGAGCAAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAAATGGGCTACAGGTAAATCTTAAAAATTTACTTCTCTTTGTATTTAGAGCTGCTGTCGACCCATCTTTTAGCATTCTCCTTTACAAGAACTTTGTTATTCAGCTCTTAAATGGTTTGTGATCTGCTGCTAATGTTTTTCCTTGCTGTGGTTGCAGCACACGAGTGGTCGACTTGATTAAGCACATGGCATCAGTCCAGTAAAGTGGCAGTTCCGAGTATGATGGTGCGTTACTGAGCATATTTAGAAGAGGAAAAAAGCTTTAGAATAAAGTAAAATGAGAAGCTGTTTGACGAGTTTGGAGGTGGCTGTCTGTTTACTATTGTATTTTCATTTGGGGTCTCTTGTTGGATTGTTGTTTTCCCCAATTTTCAAATGTGTCTGCAAAACTGTCTGGATATGTTGTTTTGTCTTGCTATCAATGTATAATAACGTTGGACCC</genome_strand>
        <mrna_strand>TTAAAACGAACTCCATTTTCCTTCTCAGTTCACAAAAAAAAATCATGG.................................................................................................................................GCAAGATTAAGATCGGAATCAATG.......................................................................................................................GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAG.......................................................................................AAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG.......................................................................................GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG..........................................................................CCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGGAGGAAGAGCTGCATCATTCAACATTATCCCCAGCAGCACTGGAGCTGCAAAGGCTGTTGGAAAGGTGCTACCATCATTGAATGGAAAGTTAACAGGAATGTCTTTCCGAGTTCCAACAGTCGATGTCTCTGTGGTTGATCTCACTGTGAGGTTGGAGAAAGAAGCCACCTATGATGAAATCAAGGCTGCTATCAA.............................................................................................................................................................................................................................................................................GGAGGAGTCTGAAGGAAAATTAAAGGGAATTCTTGGATACACTGAAGATGACGTGGTATCTACAGACTTTCTTGGGGACAACAG..................................................................................................................................................................................ATCAAGTATCTTTGACGCCAAGGCTGGAATTGCTTTGAGCAAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAAATGGGCTACAG...............................................................................................................................................CACACGAGTGGTCGACTTGATTAAGCACATGGCATCAGTCCAGTAAAGTGGCAGTTCCGAGTATGATGGTGCGTTACTGAGCATATTTAGAAGAGGAAAAAAGCTTTAGAATAAAGTAAAATGAGAAGCTGTTTGACGAGTTTGGAGGTGGCTGTCTGTTTACTATTGTATTTTCATTTGGGGTCTCTTGTTGGATTGTTGTTTTCCCCAATTTTCAAATGTGTCTGCAAAACTGTCTGGATATGTTGTTTTGTCTTGCTATCAATGTATAATAACGTTGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335494" ref_strand="+" ref_description="SGN-U335494        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, identical to SP:P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana} | chr3:1080960-1083537 FORWARD | Aliases: T6K12.26, T6K12_26(evalue: 3e-103, score=371) genbank/nr: gi|18072801|emb|CAC80375.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum](evalue: 1e-104, score=382)">
      <seq>attttccttctcagttcacaaaaaaaaatcctgggcaagattaagatcggaatcaatggttttggaagaattggccgattggtggccagggtggctctacaaagagatgatgttgagctcgttgctgttaacgatcccttcatcaccgtggaatacatgacatacatgtttaagtatgacagtgttcacggtcaatggaagaacaatgagctcaaggttaaggatgagaagactcttctctttggtgagaagcctgttactgtatttggcatcgtggagtcaactggagtcttcactgataaagacaaggctgctgcccacttgaagggtggtgctaagaaagtagttatttctgctcctagcaaggatgcacctatgtttgttgttggtgtcaatgaaaaggaatacaagccagacctcaacatcgtttctaatgctagctgtactactaactgccttgcacctctggcaaaggttattcatgacaggtttggaatcgttgagggtcttatgactacagttcactccataactgccacccacaaaactgttgatggaccatcacctaaggactggagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77118" stop="73947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76818" g_stop="76785" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="76656" i_length="129">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76655" g_stop="76632" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="58" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76631" i_stop="76513" i_length="119">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76512" g_stop="76412" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="159" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76411" i_stop="75505" i_length="907">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75504" g_stop="75394" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="270" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75393" i_stop="75259" i_length="135">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75258" g_stop="75202" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75201" i_stop="74662" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74661" g_stop="74515" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="474" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74514" i_stop="74428" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74427" g_stop="74367" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="535" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74366" i_stop="74293" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74292" g_stop="74247" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="581" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U335494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76818" e_stop="76785"/>
          <exon e_start="76655" e_stop="76632"/>
          <exon e_start="76512" e_stop="76412"/>
          <exon e_start="75504" e_stop="75394"/>
          <exon e_start="75258" e_stop="75202"/>
          <exon e_start="74661" e_stop="74515"/>
          <exon e_start="74427" e_stop="74367"/>
          <exon e_start="74292" e_stop="74247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCTTCTCAGTTCACAAAAAAAAATCATGGGTATATCATCAGTTATCCTTTCTTTACTTGTTCTTCAATTTCTTTTTCTGCATGTATCATCATACGTTATACTTCACGGGCTTTAACTAATTCCATTTTTTCCATATCTTCTTTTGTAATTTTTTGCAGGCAAGATTAAGATCGGAATCAATGGTATATAATCTGTTGTTTTTGTCTCGTGAATTTGTTAATTTAGTGTGTTTTTCTGAATTTTCATGAAATTACTTTTTGGTTTTGGCTAAGATCGGTTTCGAATGTTGTTTTGTTTGTAGGTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATGGTAACATGGCAATTAATGATAGTTTATGAACTATGAATTAAGCTTTAATGTCAGTTTAGTTTGGGTTGATTATATGTTTTAGTTCATTTAGTTCATAAAATTGTAGTATTTAGACAATTTTATCATAATTAGACTATTTTCACATGTTATAGTTAATTACCATGATTTTTTATGAGTTAACGGTACAAAATACACTTAAATGTGTCCAAGTTTTTTGAGTTTTCTATCGGAACTATCATGTGTGTGTTTCACAAACTGTTATCAAAACACACATGAACTATCATTGTTGAGTTAAATACCTGAAATTTCAGGTAGGAAAAGTGAACTCATAGTTCAGGTGTGTTTCGATAAACATTTGGTGAAAGTTCAAGTAGGAAATTCACAGCGTGTCGGAAGCTATTACAAAATGTTATCAAAACACATGAACTATCATTGTTTGAGTTTCATACCTGAAATTTCAGGTGGGAAAAGTGAACTACTCATAGTTCTGGTGTGTTTCGATAAATGTTTGGTGATAGTTCGAGTAGGAAAATCACACATGATAGTTCAGGTAGGAATCTCAAAAAATTGGGATACTTTTAAGTCTGTTTTTGATGATCAGTGCACCTCAGTCATTAAAAAAGGGTTGTTTTTGACCCTGTAATTCTTTTTTCTTTGGCTGTTTCTTAGTTCTTCACTTTCCAGAAGTGTTGGGTCAAAGACAGCACTTTTCCTTTATTTATGCTTTGCGAAATTCACATAGTGATATTCAGTAGTAACAATATCAGTAGATCTGTTGTTTTCTGGGGCTTTAAGTCGATGGGGATTGTATATGATGATTGTTGCAGACATACATGGTCATGTGTAAGTTTACTGTTATTATTTGAGGGGTTAAGTTGATGGGTATTGTATATGATGCTTGTTGCAGACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAGGTAAATTATGTCTCCAACTTTTCTTTATTATATGAAAAACTGCATTAGAATTTCTCTTGATTGGACTTATTGTATGGATGTCTGAAGAAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAGGTTTGTGATCCTAAATAACTAGAGCGTTCTTATTTTGGCTTACTGTTTGTAGCTAATATTGATTTTTCAAAGTACATAGTTTGACACTCCAACATATAATCCCCCATGGCCTGAACACTTGGTGCCTGAAACCATGTAGCGAACTTTGTTTGCATTTTTTCTTTTGTACATGTTTATGTATGCATTTGTTAGTGAAGGTGCTATTCTGAGGCTTTACTCATGTACTTTTGTTTTCTTCTCCTGTCTAATCAAACTTCTGTGGAAACTTAAGGACAGAGTATGCTGTCATCTTGAAAGCAATTTAAAACTTCTCTATGTATTTTCTCGACAGGAGTCTAGGTGTTGCAGTACGCTGTTTGTATTGTCTCTATATTAGTTTTTTTTAAAATGTAAATTGATGCTAATGCGATGATGTTTGGGTGTTGACTACTTGGATTGATATGGTTATCACGTATTTCCTTGCACATTAGCTTGATTACCTGCATTGAATAGTTGGTGTTGAGTACCTGCTTAAATTTTTTTGGTTGTTGTTATTACCAGGGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAGGTTCCCTTTTTTTTCTTTTGCCCTGTTCTTCATTTTAGTATTTGAGCCTATATGTGAATTTAAATGATTTCTTTTATGACTTTGCAGGTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTGGTAAGTATTGCTTTATGCATTAGAAGTTAATACAGCTTCTGTAGCTTGAGTACTAAGTAATTATTTTATAACAGCCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGG</genome_strand>
        <mrna_strand>ATTTTCCTTCTCAGTTCACAAAAAAAAATCCTGG.................................................................................................................................GCAAGATTAAGATCGGAATCAATG.......................................................................................................................GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGC.......................................................................................................................................ATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG.......................................................................................GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG..........................................................................CCACCCACAAAACTGTTGATGGACCATCACCTAAGGACTGGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342420" ref_strand="+" ref_description="SGN-U342420        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-05, score=53.1)">
      <seq>tcaaattcaaaaaaataaagaaataacagcaagtttctttgaaaacaaaataaagaaaatggtgtcaagagtggaagaagcaatgaaaataaggcagcaacaggaggtgaaaaattaccaagtacagaagcaattgatgcaatgcaacaaaggaaaaacaaataagttcaagaggagtagttctaatgttgaagaagatggtgcttcttctgctattcttttgcttgcttgtattgcttgtgccacttcccatcacctatagaataattaatcatagattatcatcaccttgttaaccaaaatattaactacatgcagtcgctaataattatccgtctctgtttcattttatataacactctttttgtttttttatctgtcaagagttcaatgtatgttccttctagtcatataatatatagaagattagtagtagctctttttggctagagatagattcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83381" stop="84445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83681" g_stop="84145" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U342420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83681" e_stop="84145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCAAAAAAATAAAGAAATAACAGCAAGTTTCTTTGAAAACAAAATAAAGAAAATGGTGTCAAGAGTGGAAGAAGCAATGAAAATAAGGCAGCAACAGGAGGTGAAAAATTACCAAGTACAGAAGCAATTGATGCAATGCAACAAAGGAAAAACAAATAAGTTCAAGAGGAGTAGTTCTAATGTTGAAGAAGATGGTGCTTCTTCTGCTATTCTTTTGCTTGCTTGTATTGCTTGTGCCACTTCCCATCACCTATAGAATAATTAATCATAGATTATCATCACCTTGTTAACCAAAATATTAACTACATGCAGTCGCTAATAATTATCCGTCTCTGTTTCATTTTATATAACACTCTTTTTGTTTTTTTATCTGTCAAGAGTTCAATGTATGTTCCTTCTAGTCATATAATATATAGAAGATTAGTAGTAGCTCTTTTTGGCTAGAGATAGATTCATGAT</genome_strand>
        <mrna_strand>TCAAATTCAAAAAAATAAAGAAATAACAGCAAGTTTCTTTGAAAACAAAATAAAGAAAATGGTGTCAAGAGTGGAAGAAGCAATGAAAATAAGGCAGCAACAGGAGGTGAAAAATTACCAAGTACAGAAGCAATTGATGCAATGCAACAAAGGAAAAACAAATAAGTTCAAGAGGAGTAGTTCTAATGTTGAAGAAGATGGTGCTTCTTCTGCTATTCTTTTGCTTGCTTGTATTGCTTGTGCCACTTCCCATCACCTATAGAATAATTAATCATAGATTATCATCACCTTGTTAACCAAAATATTAACTACATGCAGTCGCTAATAATTATCCGTCTCTGTTTCATTTTATATAACACTCTTTTTGTTTTTTTATCTGTCAAGAGTTCAATGTATGTTCCTTCTAGTCATATAATATATAGAAGATTAGTAGTAGCTCTTTTTGGCTAGAGATAGATTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314771" ref_strand="+" ref_description="SGN-U314771        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleotide diphosphate kinase II, chloroplast (NDPK2), identical to SP:O64903 Nucleoside diphosphate kinase II, chloroplast precursor (NDK II) (NDP kinase II) (NDPK II) (NDPK Ia) (Arabidopsis thaliana); contains Pfam PF00334 : Nucleoside diphosphate kinase domain; contains Pfam profile PF00334: Nucleoside diphosphate kinase | chr5:25389130-25391081 REVERSE | Aliases: MDC12.28, MDC12_28(evalue: 2e-79, score=292) genbank/nr: gi|27807824|dbj|BAC55280.1| nucleoside diphosphate kinase [Nicotiana tabacum](evalue: 7e-86, score=319)">
      <seq>caacaaatgtccccaaaaggcaaattagagctcgtatattcttaccccatttggttgcttctatggaagaagtggagcagacttatatcatgattaagcctgatggtgttcagagaggccttgttggagaaattatatccagatttgagagaaaagggtttaagctaactggattaaagctttttcagtgccccaaagaattagcggaggagcattacaaggatctacagtccaagccattcttccccaagctgattgactacattacatctggtccagttgtctgtatggcttgggagggtgttggtgttgttgcttcagcacgaaagctaataggagcaactaatcctcttaatgctgaaccaggcacaattagaggagaccttgctgttcaaactggaagaaatgtggtgcatggaagtgatagccccgacaatggcaagcgtgaaataggtctttggtttaatgaaggtgaattatgtgcatgggcagcagctctagaaccttggttggtagaataataccttagcgtagttatatgattcttcatttaagttttggaggtttgagcttaatcacttgttcggcatatgtaatgcaaaaatacaagcactgtcattgtatcatttccagcatggttggccggtttatagtaagagtctaagagcggctcactacgtgatattttttcaagttttccacttgatgtcaaactgcagaattaaatttgtagttcttctgaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93449" stop="50354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93149" g_stop="93085" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93084" i_stop="92842" i_length="243">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92841" g_stop="92785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="122" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92784" i_stop="92659" i_length="126">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92658" g_stop="92572" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="209" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92571" i_stop="91739" i_length="833">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91738" g_stop="91658" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="290" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91657" i_stop="91509" i_length="149">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91508" g_stop="91396" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="403" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91395" i_stop="91275" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91274" g_stop="91225" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="453" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91224" i_stop="90559" i_length="666">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90558" g_stop="90272" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="740" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90271" i_stop="89520" i_length="752">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89519" g_stop="89493" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="767" r_length="27" r_score="0.630"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U314771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93149" e_stop="93085"/>
          <exon e_start="92841" e_stop="92785"/>
          <exon e_start="92658" e_stop="92572"/>
          <exon e_start="91738" e_stop="91658"/>
          <exon e_start="91508" e_stop="91396"/>
          <exon e_start="91274" e_stop="91225"/>
          <exon e_start="90558" e_stop="90272"/>
          <exon e_start="89519" e_stop="89493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATGGTAAGAAGTTCGATTACAACAATTTCTTGACTACCCATTGAAGATTTTGCCCAACCCCACTTTCTCTTTTCTTCATATAAATTCTGTCCCTACAACTTGGGTTGAAAAAGTGTAATTTTTGTTAAATTTTCAAATGGGTACAGAGGATTCTGTATTGCAGGCCCTCAACTGATTTAGGATTGAGGTTTGCTGATTGATTGATTGATTTTATTTTTGGCTGTTTTTGGGGATTTTGTGTTTCAGGAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTTGTATGCTTCAGTATATTCTTCTTTCTTTGAGTTTGGATTATTAGAAAGACTTTAACTTTATGGTTTTGGCCAGGTTTTTTGATCTTCTGTTTGAATTTTGAAGATGTGTTTCCTTAATTGTTATAGGTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAGGTTTGCTTTCATGAGCTCGATAATTTTTTTTTCAACAATTGACATTTCTATGCACTACTTTGTGTTCTTGTTCTTCTCTTGTAGGATTTGCACTGCTCCCCTAGTTAGTTGCTATGTTTTCTGATTCTAAGTGCACTTGCTACACTTGAGCCAAGGCCCGAGGGTCTTTCAGAAACCTCTCTACCTCCATGAGGTAGTGGTAAGGTCTGCTTCCACTCCCCAGACCCCACTTTTGGGATTCCATGGGGTATGTTGTTGTTGACATTTCCATGCAAGCATACTCCCCCTGGGTTCCCACAACCTCCCACTGAAAAAAGAAAAAAGGAAGAAAACATGTATTTCTTAATGTCTAAGAGATTCATGAACTGCTTTTTTTTTCAGATGTCCAAAAGTTTTTCCTCTATCTAACGAGGTTCATTTAATTCACTGGTTACCCTAATGCTATGAACCAATATGATTGTCTTGGTTCCAGTTGACTTACATAAAGATTGGAATTTGTAAAGTTGGACAGAATTCAATTTCAAAATTTGTATTTTGTTTGGACTACAAGACACGAAACTAATAGAAAAACAAATAATTTATGGAATAGTTAAGGATTGGAAGGTTTATGTACCAGAAGAAATCTTTAAGGGTGGGTGGAGTTGGGTGCCAAGGGAGCTTCTTACTAGCAGTTGCTTCTATTTATATCGTTGAGAATTCTTTTGTATTTCTTTTAACAGCACTACGATTATCTTTGCTTTATCAACCAAAAGAGAATTAAGATTTCCGAGTCAATTCATTCCTATTAACTGTGCCGTGTGGTTTAGTTGCTTAGAAGTTTTCAATTGTTACAGGAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATGGTAGAAATTCTTCCCATTTAACTCTCATTTCTGTCATTCACTTGGTCAAACCAATCAAATATATCAGCATAACATGAGTTTTAAACTGTATAATGTCTCCTACAGTCTGTATATTTGCTAATCTTGTAAATTGTATCTATTTTGGCAAGGCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAGGTAGGGCCATATATATTTGTTATTTTATTTGTTTGTACATGTTCAGCAAGTATTGAGTCATGGTGCTATAAGCTTTTGATGTTGATAAATTTACAAGATTTTGATGGCAATCTATGTGCAGAAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAGGTAAGGGTTTTCCTAATTTAGCAAAACTAGTTGAGTAGCATGTAGAATTAACTTAATGTGACTTCCCCCACATGTTACTAAGTTTGGTCACCCGCCTTTGAGCTGTTAGCTGGACATACAGTAGAATCTTTACAGAAGTTCAGTTGTAGTACCTATAAGAGAAATCAAAAGGAAACAGCAAGAGTTCTTTTTATTTTTCTTGTTTTAGATATCCCCCCTCCCGGAAAAAATAAGTTTAAGTATTATTAAAGCTAGCTCCAAAGACACTGATAGTTGTAGGTCTTGCTTTGAGTGCCTTTTGCTAGATAGTTTTTCTCCAATGTGAATACACTTGTGTTCATTTTTAGCACCATAGTGATAATTAAGCATTTTGTCTATTCTCTTGTGCCTAATCACTAATTTGTGATTGAGGAATTGGTGATTTATTGGTCTCCTGCCTATCCATTCTGCAAGGTGTATATGGAGGAAAATAGCCTAGTTGTTTTTTGCCCTCTACTATAAGATTTGTATGCTGATAGTGAGTGGTAGTTCTTGGAAATTCTCTCACACACAATTGAAGCTGAAATCTACCTTTAGCAGAACACTTTAGTTTGTTCTTCTAGAAAAAATTAAGTTGGCCTTGATTCTCATTTAATTAGTGTTTTTCCTTATGTTTCCTTGCTGCAGGTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCTGTACTTCTGTTGGGTGTTAACCCCTCTTCACCATGGTCCCAAAACATCCTATCTTGCCATCCTTTTTCTGTTAAGAACATTGAGATGGAGTTCATTTTTACAAGGACACATATAGTTAGGGAGAGCAGTTCAATATTCATCTGCCATTTCCCACCTTTGAAATGAGGAGAATTCTTGAAAAGGAATGTAAACTATACTGAGCAAACATATCAACATAATATGCAGCTTTGGTCAAGTAGAAGGAGGCAGTTGAGTTTGAAGCTGTGGTAAATCCAAACAATAAATTACATCTCTACAATTGCTTTTTCCATTCACAAAAACTGTTTCCTAGTAAAATGATCTAGAAGTAACCCCCATCTGGCTTTTAAATTAAGAGGAGGGTTTCTATGCAGAGTATAATTGTATATAGAATGCAAGAATGAAGAAGGAATTTCCAAGAACGAGTTATTGTTTACTGTCACCAGATTCTGTATCTTGCTTCTGACTGTCACTGTTCTGAGTGTTGCTTTGCATTTCAAGCAGTTTCTGTTGTTCCTCCTCCTCCTCAGCTACTTGCGGATTTACATCTTTCACATCCTTGGGCTTGTTGCTTGTAGACTGCTGGTACATAACACCACCAGACATGCAGATCAACAGCCCCACTGTTCCAATAAGTTTGGAGTGTTTATCCCATATGACTAGATTTATCACCACTGTCAAAAGTTTATTAACTATGCCAAGAACAGTAAATCCTGTTGCAGAGATTGCTCTACGACAAGAAAATCCAAAGAAAGAGATGG</genome_strand>
        <mrna_strand>CAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATG...................................................................................................................................................................................................................................................GAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTT..............................................................................................................................GTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATG.....................................................................................................................................................GCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAG.........................................................................................................................AAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAACTCGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314773" ref_strand="+" ref_description="SGN-U314773        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleotide diphosphate kinase II, chloroplast (NDPK2), identical to SP:O64903 Nucleoside diphosphate kinase II, chloroplast precursor (NDK II) (NDP kinase II) (NDPK II) (NDPK Ia) (Arabidopsis thaliana); contains Pfam PF00334 : Nucleoside diphosphate kinase domain; contains Pfam profile PF00334: Nucleoside diphosphate kinase | chr5:25389130-25391081 REVERSE | Aliases: MDC12.28, MDC12_28(evalue: 3e-84, score=308) genbank/nr: gi|27807824|dbj|BAC55280.1| nucleoside diphosphate kinase [Nicotiana tabacum](evalue: 1e-95, score=352)">
      <seq>atatggaaggtcttacaatagttggagcaactccttgtgtttcttcttcacttcgtagaatctcttccaaaacaacctgtttggcctccagacttaccccaaaatccgtcaagaagcacagcctagctgcattgcaaccagcattttatcttttctcaacaaatgtccccaaaaggcaaattagagctcgtatattcttaccccatttggttgcttctatggaagaagtggagcagacttatatcatgattaagcctgatggtgttcagagaggccttgttggagaaattatatccagatttgagagaaaagggtttaagctaactggattaaagctttttcagtgccccaaagaattagcggaggagcattacaaggatctacagtccaagccattcttccccaagctgattgactacattacatctggtccagttgtctgtatggcttgggagggtgttggtgttgttgcttcagcacgaaagctaataggagcaactaatcctcttaatgctgagccaggcacaattagaggagaccttgctgttcaaactggaagaaatgtggtgcatggaagtgatagccccgacaatggcaagcgtgaaataggtctttggtttaatgaaggtgaattatgtgcatgggcagcagctctagaaccttggttggtggaataatatatgattcttcattttaagttttggaggtttgagcttaatcacttgttcggcatatgtaatacaaaaatacaagcactgtcattgtatcatttccagcatggttggcctgtttgtagtaagagtctaagagcggctcactacgtgatattttttcaagttttccaacttgatgtcaaactacagaattaaatttgtagttcttctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="-" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93605" stop="89969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93305" g_stop="93085" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93084" i_stop="92842" i_length="243">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92841" g_stop="92785" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="278" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92784" i_stop="92659" i_length="126">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92658" g_stop="92572" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="365" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92571" i_stop="91739" i_length="833">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91738" g_stop="91658" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="446" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91657" i_stop="91509" i_length="149">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91508" g_stop="91396" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="559" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91395" i_stop="91275" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91274" g_stop="91225" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="609" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91224" i_stop="90559" i_length="666">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90558" g_stop="90272" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="884" r_length="275" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="887" polyA_stop="900"/>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="-" ref_id="SGN-U314773" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93305" e_stop="93085"/>
          <exon e_start="92841" e_stop="92785"/>
          <exon e_start="92658" e_stop="92572"/>
          <exon e_start="91738" e_stop="91658"/>
          <exon e_start="91508" e_stop="91396"/>
          <exon e_start="91274" e_stop="91225"/>
          <exon e_start="90558" e_stop="90272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAAGGTCTTACAATAGTTGGAGCAACTCCTTGTGTTTCTTCTTCACTTCGTAGAATCTCTTCCAAAACAACCTGTTTGGCCTCCAGACTTACCCCAAAATCCGTCAAGAAGCACAGCCTAGCTGCATTGCAACCAGCATTTTATCTTTTCTCAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATGGTAAGAAGTTCGATTACAACAATTTCTTGACTACCCATTGAAGATTTTGCCCAACCCCACTTTCTCTTTTCTTCATATAAATTCTGTCCCTACAACTTGGGTTGAAAAAGTGTAATTTTTGTTAAATTTTCAAATGGGTACAGAGGATTCTGTATTGCAGGCCCTCAACTGATTTAGGATTGAGGTTTGCTGATTGATTGATTGATTTTATTTTTGGCTGTTTTTGGGGATTTTGTGTTTCAGGAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTTGTATGCTTCAGTATATTCTTCTTTCTTTGAGTTTGGATTATTAGAAAGACTTTAACTTTATGGTTTTGGCCAGGTTTTTTGATCTTCTGTTTGAATTTTGAAGATGTGTTTCCTTAATTGTTATAGGTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAGGTTTGCTTTCATGAGCTCGATAATTTTTTTTTCAACAATTGACATTTCTATGCACTACTTTGTGTTCTTGTTCTTCTCTTGTAGGATTTGCACTGCTCCCCTAGTTAGTTGCTATGTTTTCTGATTCTAAGTGCACTTGCTACACTTGAGCCAAGGCCCGAGGGTCTTTCAGAAACCTCTCTACCTCCATGAGGTAGTGGTAAGGTCTGCTTCCACTCCCCAGACCCCACTTTTGGGATTCCATGGGGTATGTTGTTGTTGACATTTCCATGCAAGCATACTCCCCCTGGGTTCCCACAACCTCCCACTGAAAAAAGAAAAAAGGAAGAAAACATGTATTTCTTAATGTCTAAGAGATTCATGAACTGCTTTTTTTTTCAGATGTCCAAAAGTTTTTCCTCTATCTAACGAGGTTCATTTAATTCACTGGTTACCCTAATGCTATGAACCAATATGATTGTCTTGGTTCCAGTTGACTTACATAAAGATTGGAATTTGTAAAGTTGGACAGAATTCAATTTCAAAATTTGTATTTTGTTTGGACTACAAGACACGAAACTAATAGAAAAACAAATAATTTATGGAATAGTTAAGGATTGGAAGGTTTATGTACCAGAAGAAATCTTTAAGGGTGGGTGGAGTTGGGTGCCAAGGGAGCTTCTTACTAGCAGTTGCTTCTATTTATATCGTTGAGAATTCTTTTGTATTTCTTTTAACAGCACTACGATTATCTTTGCTTTATCAACCAAAAGAGAATTAAGATTTCCGAGTCAATTCATTCCTATTAACTGTGCCGTGTGGTTTAGTTGCTTAGAAGTTTTCAATTGTTACAGGAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATGGTAGAAATTCTTCCCATTTAACTCTCATTTCTGTCATTCACTTGGTCAAACCAATCAAATATATCAGCATAACATGAGTTTTAAACTGTATAATGTCTCCTACAGTCTGTATATTTGCTAATCTTGTAAATTGTATCTATTTTGGCAAGGCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAGGTAGGGCCATATATATTTGTTATTTTATTTGTTTGTACATGTTCAGCAAGTATTGAGTCATGGTGCTATAAGCTTTTGATGTTGATAAATTTACAAGATTTTGATGGCAATCTATGTGCAGAAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAGGTAAGGGTTTTCCTAATTTAGCAAAACTAGTTGAGTAGCATGTAGAATTAACTTAATGTGACTTCCCCCACATGTTACTAAGTTTGGTCACCCGCCTTTGAGCTGTTAGCTGGACATACAGTAGAATCTTTACAGAAGTTCAGTTGTAGTACCTATAAGAGAAATCAAAAGGAAACAGCAAGAGTTCTTTTTATTTTTCTTGTTTTAGATATCCCCCCTCCCGGAAAAAATAAGTTTAAGTATTATTAAAGCTAGCTCCAAAGACACTGATAGTTGTAGGTCTTGCTTTGAGTGCCTTTTGCTAGATAGTTTTTCTCCAATGTGAATACACTTGTGTTCATTTTTAGCACCATAGTGATAATTAAGCATTTTGTCTATTCTCTTGTGCCTAATCACTAATTTGTGATTGAGGAATTGGTGATTTATTGGTCTCCTGCCTATCCATTCTGCAAGGTGTATATGGAGGAAAATAGCCTAGTTGTTTTTTGCCCTCTACTATAAGATTTGTATGCTGATAGTGAGTGGTAGTTCTTGGAAATTCTCTCACACACAATTGAAGCTGAAATCTACCTTTAGCAGAACACTTTAGTTTGTTCTTCTAGAAAAAATTAAGTTGGCCTTGATTCTCATTTAATTAGTGTTTTTCCTTATGTTTCCTTGCTGCAGGTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCC-ACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT</genome_strand>
        <mrna_strand>ATATGGAAGGTCTTACAATAGTTGGAGCAACTCCTTGTGTTTCTTCTTCACTTCGTAGAATCTCTTCCAAAACAACCTGTTTGGCCTCCAGACTTACCCCAAAATCCGTCAAGAAGCACAGCCTAGCTGCATTGCAACCAGCATTTTATCTTTTCTCAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATG...................................................................................................................................................................................................................................................GAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTT..............................................................................................................................GTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATG.....................................................................................................................................................GCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAGCCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAG.........................................................................................................................AAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTGGAATAATA---TA---T-G--AT-T-CTTCAT--TTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATACAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCTGTTTGTAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCAACTTGATGTCAAACTACAGAATTAAATTTGTAGTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332578" ref_strand="+" ref_description="SGN-U332578        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G02480.1 | Symbol: None | AAA-type ATPase family protein, contains Pfam domain, PF00004: ATPase, AAA family; similar to Spastin (Swiss-Prot:Q9UBP0) (Homo sapiens) and Spastin (Fragment) (Swiss-Prot:Q9QYY8) (Mus musculus); similar to mitochondrial sorting protein 1 (MSP1) protein (TAT-binding homolog 4) (Swiss-Prot:P28737) (Saccharomyces cerevisiae) | chr4:1081759-1088846 REVERSE | Aliases: T14P8.8, T14P8_8, AT4G02470 (evalue: 3e-43, score=171) genbank/nr: AAA(evalue: 1e-55, score=218)">
      <seq>gaaagatgctgacaaagtaatggcaggaaactcaaaattatcttcaacattcagaagtcggcttgagaaacttcctgataatgttagtactattggttcacacgctcatacagataatcacaaggataaggatagtcctgagaagacacatgacaaagggaaagaggttgcaaagaattcaaaatttctgacagaacttttcccgaatatagtggctattcacatgccgcaggatgaagcacttttatctatttggaaacaacaactggataaagacgccgatgccctcaaagtgaaagaaatttttaatagcttacaaacagttctgagtcggactggattggaatgtaatggactcgagacattgtgcatcaaggaccagaatttctctgtcgaaagtgtagagaaggtttttggatgggcattgagccatcacttgatgcagaactctcaagcggatcctgacatgaaacttgttttatctcctgagagcattcagtatgggttggaaattttacaagccaagcaaaataacaccaagagcttgaagaagtcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103956" stop="109198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104256" g_stop="104385" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104386" i_stop="107154" i_length="2769">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107155" g_stop="107256" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="232" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107257" i_stop="107337" i_length="81">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107338" g_stop="107427" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107428" i_stop="108112" i_length="685">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108113" g_stop="108188" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="398" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108189" i_stop="108638" i_length="450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108639" g_stop="108732" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="492" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108733" i_stop="108831" i_length="99">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108832" g_stop="108898" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="559" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U332578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104256" e_stop="104385"/>
          <exon e_start="107155" e_stop="107256"/>
          <exon e_start="107338" e_stop="107427"/>
          <exon e_start="108113" e_stop="108188"/>
          <exon e_start="108639" e_stop="108732"/>
          <exon e_start="108832" e_stop="108898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATGCTGACAAAGTAATGGCAGGAAACTCAAAATTATCTTCAACATTCAGAAGTCGGCTTGAGAAACTTCCTGATAATGTTAGTACTATTGGTTCACACGCTCATACAGATAATCACAAGGATAAGGTACTATTTGAGATCATATTGCCCACGAATATATGCATGTAATTATATTTATTCCTGTTATATAATGTGTATACAGTGTATTAACAGGCCTGCTATGATATTTCTTATGGATTATATTTCTTGGCTATAGTAGTTATTCTTGTTAGACTGAGGCTTGATCAAGAGAATGGGAGGTGAATCCTATTACAAAAAAAAGTTTAAAAGACCATCTTCGAAGCACAAAAGAGACATTAGTCCTGCTATATATATAAATGCATGCAAGAACATGCAACATACACACACTACACAGTGCGGCACACTCTCTCTTTCGTGTGTGTATATATATATATACACACAATAAATATGGCCTCAACGGCCGTATACAAGAGATGTACCGAAAAGTAGACAATTTACAAAATTATATGATTCTCTACAGACTCCATCCAATCATCTATTCGACTAGAAACTTTCTGAGTACACCAAAAGAAATATGAGAACAATGACTACTACACCTTCAAAAGCTCTCCTGTTTTTCTCTCTACAAACAACCTACATTAGCGCTAGTGGAATCGTATTCCAATCCCTTCATCTTCTCTTTCTTATGCTTTTCCAACTGAACATCAACTCTCTCACATTGTTTGACATTGCCTAAGATGTGTGAAACCACCCAAGCATATCCCTATATATACATAAACATGGTCTCAGTGGCTGTATACAAGAGATGTACCTAAGAGTAGAGAATTCACAAAATGATATGATTCTCTAAAAACTCCACCCAATCATCTATTCAACAAGAAACTTTCTGAGTGCACCAAAAGAAAATAAGAGAAAAAAGACTACTAAACCTTCAAAAGCTCTCATGTTTCTCTCTCTCCAAACAACCAACATTAGCGCTAGTGGAATCGTACTCCAATCCCTTCATCTTCTCCTTCTCATGCTCTTCCAACTGAACATCAACTCTCTCACAGGGTCTGACATTGTCTTAGAAGTGCGAAACCACCCAAGCAACACCATAACATCAATGTCAATCAAAAATCCTACATCTTGGAAAATTTAGGATTTGAAATCAGGATACAAATCGCATGTCCAAAAACATCCCAAATTGCCATGTTTAAAAACATCCCAATTTGCATGTCCAAATGCCTATTAAATCTCTAGTGTTGAATTAAAGCCAAACCCGGTATTAACCACAATAGAAAGAAAATAATGTGAAAATAATTTAGGAAATCGAACATTTGTGCAACATTCTTTCATAATCATAAATGAGGTCTCTTTATGTGATCTTCAACAATCCTTTCCTCATTAGTTAAGTTTTGTGGTTGAGTTAGGCCCATGATGATGTAACATGGTATCAAAGTTAGGCCTATCCCAATTATTATTTATCGATGTTAGGTCCCCATTTATATTGTTCATGCTCGAGATGCCCAGTCTTGGCGCGGGGGTGGAGATCGACATCTTCTCATTTAAAGATGGCATGTATCTTAATATATATATATATATATATATAAAATCACTTGATTTCAATTTGTTTGTCTGGGGGGTTTTAAGGAAGTAAAAAAAAACTTTTGAATTAAAGATATGTAGAATTTAACAAAATGCCTTTAATCTTGTATTCTTAAACATGCATGTGAATAGGTAAGAATTAAAAAGTGGTCAAAAAGGGAAAGATGCATTATCTTGTAACAGACTCAAAAGGATAGTAAGGTGATTAAATTGAAAGGAGGCCAAATATTCTATAAATAGATTCAAGCACAATGTTTTTTAAAATGCCCAAATGCAGCAAAAGATAGTGAATCATGTAACTGTGATTTATTTGGTAAATAATTAGTACTCTTATCTTGAATACCATACTGAATGATCAAATGATGTTCGATTGTTCTGGTTGCTTATGTTAATCTGCCATAATAGCCAACCCAACCATATAAATATGGACCGACAATACTAAACCATAAATATAGTTGGCGTCTTGACGAAGTCATGCATTAATTTTTGAGAAAATGCTATAACTGAACTTCTAGAGATAGGAATAAGAAATTAGAAATTTAGTATAAGATATTTGCCACGGAAAACTTTAGGTTACATCTTTCCATTCAAATCAGAAATTTGAAATGAACTTTGAATTTAGTTGGCTTCATTTCTGTCTCATATTTGGCTTAGTCATAGTTTTTCTATCCTTTTCAAATTTCAAGTAATTATTGTTTATGTTTATCAATACATTTCTATTTTTTTTAAAAAATTTTCATCATTAGTGCTATTCTTCGTTAAAGCCTATTCTTTAATTGCATCATGCAGTTAAAGCAACAGTACTAGGGCTTTTTCTAGCTCCTTTCGCTTTTGACTACTCGAAGTTTGTTCAAACTGACCACATATCAAGCCATGATTTTGTAATTTTTCCTTCATCCTCTACTGTGGTGTTGATATGTTTGGAGAGTTTTCTGACCGTTCTAACATTTTCTCTGTTCACAAGTGTAGTTATGGCTCCTGAAACCCACCCTCCTTCCTTTTTCTCTGTGTCTCATTTTCTTATTCTTTATCGTCTTCATTTGAGGTGTGTTTCTGCTTCGTCAACTTTAGTATTGCTTACATTTATTAAAAAAAAATTATCCTATTGAAAGTGTTTACATTGGAAAACCATGGGTCTGTCGACTCTGATCTTGCACAGTGCCCTTTCCTCCTGCTGAATTTGCGTTTCTGCTGTATTACCCTTGAATGAACACTGCTGCCATATGGCAAGTGAATAGTCTTTTTCAACTCTCAGTTGCTTATAGTACTGAATTTTGATGAGTTCAGGATAGTCCTGAGAAGACACATGACAAAGGGAAAGAGGTTGCAAAGAATTCAAAATTTCTGACAGAACTTTTCCCGAATATAGTGGCTATTCACATGCCGCAGGTCTGTTGTTTAAATTCTATAGAATTTTATATGATCTTATTCTTGATTCAGCAAATTACTGAGTGGTTTTGAGTATTGCAGGATGAAGCACTTTTATCTATTTGGAAACAACAACTGGATAAAGACGCCGATGCCCTCAAAGTGAAAGAAATTTTTAATAGCTTACAAACAGTACGGCTTTCTGACCTTCAAAGTTATGAGTGCCTTGGATATAGTTTTAACCTTACATTTGTGACTCCCCTCAGATGTTTATTTGACTTCTCTTGCATTCTTATGGAAGTGCAGAATTAATTGAGATAGAAGATTTGGAATGAATATTTATTTTACTCTATGTTGGTTCATTATACATGTAGCACCTAGAACTCGGTTGAAATCCCCTTCTCCTTTAGTTCTCCTGAGTTAAGCAAGGTTGCCTTGCTACCAGCCAGGCAAACCAAACTTCATATGGAGCCTTGACTTTCCGAATATGTTTCCAACAATAAGCTGACCTTAAAGTAAAATATTCTTACTGTAGCCTTTCCATGTTAATTTTTCTTCACGGTCTGTTTGTGTCCTGGAACACCTCCATCTGCTGCAGAAGTTGAGCAACTCTGTCAATTTCTCAGTCATTTTGTAGCCTCCTGAAACTGAAATTCCACCCCTGTTGACTCGATAAATCTGCTCTATTGTCCTGATTTCCTCAATAATAATGTCAATGGATGTATTTCCAACATTCTAAAGCTAGAGTTGGTGCTCTCTGATATTCTTTTTTAAAAAATTGTGTGAGCAAGTTGAAAGCTTTATTTCTTAATTAAATAGATTAATCATTTGAATTCTATCTTGAACTACTTTCTATATGATGGTTGCTCTTTTATAGGTTCTGAGTCGGACTGGATTGGAATGTAATGGACTCGAGACATTGTGCATCAAGGACCAGAATTTCTCTGTCGAAAGTAAGATTTTTCTTTCACTGTTTTGCCTTTTCTCTTTGATTTTCCTTTCTCTTTCCGTTGTTTTGGGGTTGGGGGTAGAGGGGTGTGTGAGCTACATTAGATTCCCACTAGTATATCACCACCGTGTTGTTTAAATCCTTAATAATCCCTACCACATCCGTATCGGCACGACATGGGTGTGGGTGTATGGACTATGACAGCAGTAGTAGTTACACAGGATTAAGATGAATTGCATTATCACTTTTAGCTATTGGTGCAGTTCTGAGTGTGTAGATGATCCTATAGCTATTCTAGATATCCTAGGTTCTTTGTAAGATGAAGTAGGATCTAGTTTAGTTTTGTTTTGAGTACACTAACTGTATGTAGCTTTATGATGTAAATTTGGGATCCCCAGCCTTTAGTGCTGAAGATTAATACACAAAACTGTTACCTTTTTTGTGGTGCTTGAAGGTGTAGAGAAGGTTTTTGGATGGGCATTGAGCCATCACTTGATGCAGAACTCTCAAGCGGATCCTGACATGAAACTTGTTTTATCTCCTGAGAGGTAATGGGTATAGCAGCAGCTGATATTCCTATCCATGGTTCGTTTGACTGTCATAATTTGTGAATTGAACAACTGTGGAAATCTTTTGCTATTTAACAGCATTCAGTATGGGTTGGAAATTTTACAAGCCAAGCAAAATAACACCAAGAGCTTGAAGAAGTCACTT</genome_strand>
        <mrna_strand>GAAAGATGCTGACAAAGTAATGGCAGGAAACTCAAAATTATCTTCAACATTCAGAAGTCGGCTTGAGAAACTTCCTGATAATGTTAGTACTATTGGTTCACACGCTCATACAGATAATCACAAGGATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCCTGAGAAGACACATGACAAAGGGAAAGAGGTTGCAAAGAATTCAAAATTTCTGACAGAACTTTTCCCGAATATAGTGGCTATTCACATGCCGCAG.................................................................................GATGAAGCACTTTTATCTATTTGGAAACAACAACTGGATAAAGACGCCGATGCCCTCAAAGTGAAAGAAATTTTTAATAGCTTACAAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGTCGGACTGGATTGGAATGTAATGGACTCGAGACATTGTGCATCAAGGACCAGAATTTCTCTGTCGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGAGAAGGTTTTTGGATGGGCATTGAGCCATCACTTGATGCAGAACTCTCAAGCGGATCCTGACATGAAACTTGTTTTATCTCCTGAGAG...................................................................................................CATTCAGTATGGGTTGGAAATTTTACAAGCCAAGCAAAATAACACCAAGAGCTTGAAGAAGTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314552" ref_strand="+" ref_description="SGN-U314552        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: AT4G24860.1 | Symbol: None | AAA-type ATPase family protein, contains Pfam profile PF00004: ATPase, AAA family | chr4:12801559-12808200 REVERSE | Aliases: F6I7.70, F6I7_70 (evalue: 1e-13, score=74.7) genbank/nr: AAA(evalue: 3e-12, score=76.3)">
      <seq>ctctcactcttttcctctcaaaaacaaaaaacaaaatggtatcacaaacacaaagagaaagttccgcctctcaatcacccaaaagaaaaaaaaggaaaaagaagtcatcatcatcgtccgatcataaacctccttcgcgatgtccaaaggcaaatgataacgatgtgtattcacctggaaaatcggtaccgatctgggagatattgaaggagcaatattcgatagatcgatccaaactctgcggcaacagctcggctaatgataaagttcaggctgccggaaaagttgacggcgttgctgccagaaaaggtgtcagatctgtcacagaaggtgctgaaatgaagaagccttggtgtcaactaatagcagagtttccgcaggatcccatttggcggaaagcatatcatgaattttttcatactcaagattcaaacacaaactcgagatctctggttaaaacagaaacaattccgtccactgcaatgctgaattcaacagtggagatttttgagcaacgttttatgactggtgcgggcaaaaaccttcctgaacatgcaatgatttgcatgataaatcgtgaagagtcagtcatgagcgagctgtgcttagacgcccctgccgtggatgatccggacaagttattcgctaatacattgtttgaggttgtattcaatgagagccggaatttgccattcattttgttcgtgaaagatgctgacaaagtaatggcaggaaacgcagaattatattcaacatttaaaactcggcttgagaaacttcttaataatgtaattattattggttcacagtcggcttgagaagcttcctgataatgtaattagtattggttcacaatagcttgagaagctttctgataatgtaattattattggtttacaattggcttgagaagcttcctgataatgtaattactattggttcacagtctgcttgagaagcttcctgataatgtaattactatatgttcacagtcggcttgagaagcttcctgataatgtaatttctattggttcacagtcggcttgaaaagcttcccgataatgtaattactaatggttcacagtcggcttgagaagcttcctgataatgtaattactattggttcacacgctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116554" stop="119348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116854" g_stop="117002" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117085" g_stop="117265" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="330" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117266" i_stop="117680" i_length="415">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117681" g_stop="117730" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="380" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117731" i_stop="117821" i_length="91">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117822" g_stop="117929" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="488" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117930" i_stop="118067" i_length="138">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118068" g_stop="118163" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="584" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118164" i_stop="118398" i_length="235">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118399" g_stop="118476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="662" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118477" i_stop="118566" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118567" g_stop="119034" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="1130" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U314552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1130</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116854" e_stop="117002"/>
          <exon e_start="117085" e_stop="117265"/>
          <exon e_start="117681" e_stop="117730"/>
          <exon e_start="117822" e_stop="117929"/>
          <exon e_start="118068" e_stop="118163"/>
          <exon e_start="118399" e_stop="118476"/>
          <exon e_start="118567" e_stop="119034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTCTTTTCCTCTCAAAAACAAAAAACAAAATGGTATCACAAACACAAAGAGAAAGTTCCGCCTCTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAGGTTCACATAGATTCATTTTCACTTCAGTTTTTTTCCTTTTTTAGTGTTTGTTGATTTTTTTTTCTCTTGTGGATTTTTTTAGGCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAGGCAAGCCCTTTTTTTTTCATATTACTAGCTCCGTCTATTTTAACGTGTCTGTTTGGACTTCCATTGTATTTTAGTGCTGATGATTGAACTTTATAACTTCAACTTAAAATTAAGTGTCTGTAAGTATACTTAAAAACACTTAAAATAATTAAAACTCAAAACAGATTCATAAATTATAGTAAATCAATTTTATGAGGACTTTTGACATGTTTTTATTATTTTAGCTTCAAATGAAGTGCGTATAAGTACTTTTTGAATTTATTCAAAAACTTCAAAAGGAATTATTTTAAATAAGTCTACTGTTTTTTAAGTTTATTTTAGGTAAAAGAATTAAGAAAATTTATTTATCTTTTTTGATTTTCTTGAGAAATTCACTGTTTTGTCTATCTTTGATGATATTGAATGTGTCATTCAGGTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTTAATTCGGTATTTGTATAACATCCTTATTAATTTAGATTTATATTGTTTAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTGGTTATCATCTATTTTTGTTGTTCAATTTTTTTGGATTTAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATAGAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATATAATGTGAACACACCGCAGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTGGAAATTCTTTCTATAAATATGTGAAATTTTTGTTCCTTTCTTTTTTGGGTTAAACTTTACTCTTTACATTTCATTATACTTTTTCAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTAGTATTGGTTCACAATAGCTTGAGAAGCTTTCTGATAATGTAATTATTATTGGTTTACAATTGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAGTCTGCTTGAGAAGCTTCCTGATAATGTAATTACTATATGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTTCTATTGGTTCACAGTCGGCTTGAAAAGCTTCCCGATAATGTAATTACTAATGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAC</genome_strand>
        <mrna_strand>CTCTCACTCTTTTCCTCTCAAAAACAAAAAACAAAATGGTATCACAAACACAAAGAGAAAGTTCCGCCTCTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAG..................................................................................GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAG...........................................................................................GATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTG..........................................................................................................................................AATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAG...........................................................................................................................................................................................................................................TCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAG..........................................................................................GTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTAGTATTGGTTCACAATAGCTTGAGAAGCTTTCTGATAATGTAATTATTATTGGTTTACAATTGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAGTCTGCTTGAGAAGCTTCCTGATAATGTAATTACTATATGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTTCTATTGGTTCACAGTCGGCTTGAAAAGCTTCCCGATAATGTAATTACTAATGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314554" ref_strand="+" ref_description="SGN-U314554        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT4G24860.1 | Symbol: None | AAA-type ATPase family protein, contains Pfam profile PF00004: ATPase, AAA family | chr4:12801559-12808200 REVERSE | Aliases: F6I7.70, F6I7_70 (evalue: 5e-10, score=62.4) genbank/nr: gi|42567117|ref|NP_194217.2| AAA-type ATPase family protein [Arabidopsis thaliana](evalue: 4e-08, score=62.4)">
      <seq>tctcactcttttcctctcaaaaacaaaaaacaaaatggtatcacaaacacaaagagaaagttccgcctctcaatcacccaaaagaaaaaaaaaggaaaaagaagtcatcatcatcgtccgatcataaacctccttcgcgatgtccaaaggcaaatgataacgatgtgtattcacctggaaaatcggtaccgatctgggagatattgaaggagcaatattcgatagatcgatccaaactctgcggcaacagctcggctaatgataaagttcaggctgccggaaaagttgacggcgttgctgccagaaaaggtgtcagatctgtcacagaaggtgctgaaatgaagaagccttggtgtcaactaatagcagagtttccgcaggttttcaagtagtagtatttaaaattatttctatttgttttaattcggtatttgtataacatccttattaatttagatttatagtttccgcaggatcccatttggcggaaagcatatcatgaattttttcatactcaagattcaaacacaaactcgagatctctggttaaaacagaaacaattccgtccactgcaatgctgaattcaacagtggagatttttgagcaacgttttatgactggtgcgggcaaaaaccttcctgaacatgcaatgatttgcatgataaatcgtgaagaggtaaagctctaacttggagtaccgactttcctcactatttaatgttgttttgtccgatagttgagaacgatttggaaagtcacccgataatttattagttaatatattttcaagaaataatataaccttaaacacataatttaatatttcccattagtttactaagttaaaacattctttaagtatgcagtcttaaattttacttccaattcattttcttatttcttcctctcagtcagtcatgagcgagctgtgcttagacgcccctgccgtggatgatccggacaagttattcgctaatacattgtttgaggttgtattcaatgagagccggaatttgccattcattttgttcgtgaaagatgctgacaaagtaatggcaggaaacgcagaattatattcaacatttaaaactcggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116555" stop="118974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116855" g_stop="117002" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117085" g_stop="117265" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="330" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117266" i_stop="117680" i_length="415">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117681" g_stop="117929" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="581" r_length="251" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117930" i_stop="118067" i_length="138">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118068" g_stop="118476" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="990" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118477" i_stop="118566" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118567" g_stop="118674" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1098" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U314554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1095</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116855" e_stop="117002"/>
          <exon e_start="117085" e_stop="117265"/>
          <exon e_start="117681" e_stop="117929"/>
          <exon e_start="118068" e_stop="118476"/>
          <exon e_start="118567" e_stop="118674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCTTTTCCTCTCAAAAACAAAAAACAAAATGGTATCACAAACACAAAGAGAAAGTTCCGCCTCTCAATCACCCAAAAG-AAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAGGTTCACATAGATTCATTTTCACTTCAGTTTTTTTCCTTTTTTAGTGTTTGTTGATTTTTTTTTCTCTTGTGGATTTTTTTAGGCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAGGCAAGCCCTTTTTTTTTCATATTACTAGCTCCGTCTATTTTAACGTGTCTGTTTGGACTTCCATTGTATTTTAGTGCTGATGATTGAACTTTATAACTTCAACTTAAAATTAAGTGTCTGTAAGTATACTTAAAAACACTTAAAATAATTAAAACTCAAAACAGATTCATAAATTATAGTAAATCAATTTTATGAGGACTTTTGACATGTTTTTATTATTTTAGCTTCAAATGAAGTGCGTATAAGTACTTTTTGAATTTATTCAAAAACTTCAAAAGGAATTATTTTAAATAAGTCTACTGTTTTTTAAGTTTATTTTAGGTAAAAGAATTAAGAAAATTTATTTATCTTTTTTGATTTTCTTGAGAAATTCACTGTTTTGTCTATCTTTGATGATATTGAATGTGTCATTCAGGTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTTAATTCGGTATTTGTATAACATCCTTATTAATTTAGATTTATA--TTGTTTAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTGGTTATCATCTATTTTTGTTGTTCAATTTTTTTGGATTTAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATAGAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATATAATGTGAACACACCGCAGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTGGAAATTCTTTCTATAAATATGTGAAATTTTTGTTCCTTTCTTTTTTGGGTTAAACTTTACTCTTTACATTTCATTATACTTTTTCAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTT</genome_strand>
        <mrna_strand>TCTCACTCTTTTCCTCTCAAAAACAAAAAACAAAATGGTATCACAAACACAAAGAGAAAGTTCCGCCTCTCAATCACCCAAAAGAAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAG..................................................................................GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTTAATTCGGTATTTGTATAACATCCTTATTAATTTAGATTTATAGTTTCCGCAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTG..........................................................................................................................................AATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAG..........................................................................................GTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314555" ref_strand="+" ref_description="SGN-U314555        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT4G24860.1 | Symbol: None | AAA-type ATPase family protein, contains Pfam profile PF00004: ATPase, AAA family | chr4:12801559-12808200 REVERSE | Aliases: F6I7.70, F6I7_70 (evalue: 4e-13, score=72) genbank/nr: AAA(evalue: 6e-12, score=74.3)">
      <seq>ctcaatcacccaaaagaaaaaaaaggaaaaagaagtcatcatcatcgtccgatcataaacctccttcgcgatgtccaaaggcaaatgataacgatgtgtattcacctggaaaatcggtaccgatctgggagatattgaaggagcaatattcgatagatcgatccaaactctgcggcaacagctcggctaatgataaagttcaggctgccggaaaagttgacggcgttgctgccagaaaaggtgtcagatctgtcacagaaggtgctgaaatgaagaagccttggtgtcaactaatagcagagtttccttaggatcccatttggcggaaagcatatcatgaattttttcatactcaagattcaaacacaaactcgagatctctggttaaaacagaaacaattccgtccactgcaatgctggttatcatctatttttgttgttcaatttttttggatttaatgtgaatacactgcagaaattttgtttgatatctaatagaatgtgaatacactgcagaaattttgtttgatatctaatataatgtgaacacaccgcagaattcaacagtggagatttttgagcaacgttttatgactggtgcgggcaaaaaccttcctgaacatgcaatgatttgcatgataaatcgtgaagagtcagtcatgagcgagctgtgcttagacgcccctgccgtggatgatccggacaagttattcgctaatacattgtttgaggttgtattcaatgagagccggaatttgccattcattttgttcgtgaaagatgctgacaaagtaatggcaggaaacgcagaattatattcaacatttaaaactcggcttgagaaacttcttaataatgtaattattattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116623" stop="119007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116923" g_stop="117002" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117085" g_stop="117265" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="261" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117266" i_stop="117680" i_length="415">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117681" g_stop="117730" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="311" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117731" i_stop="117821" i_length="91">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117822" g_stop="118163" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="653" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118164" i_stop="118398" i_length="235">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118399" g_stop="118476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="731" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118477" i_stop="118566" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118567" g_stop="118707" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="872" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U314555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116923" e_stop="117002"/>
          <exon e_start="117085" e_stop="117265"/>
          <exon e_start="117681" e_stop="117730"/>
          <exon e_start="117822" e_stop="118163"/>
          <exon e_start="118399" e_stop="118476"/>
          <exon e_start="118567" e_stop="118707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAGGTTCACATAGATTCATTTTCACTTCAGTTTTTTTCCTTTTTTAGTGTTTGTTGATTTTTTTTTCTCTTGTGGATTTTTTTAGGCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAGGCAAGCCCTTTTTTTTTCATATTACTAGCTCCGTCTATTTTAACGTGTCTGTTTGGACTTCCATTGTATTTTAGTGCTGATGATTGAACTTTATAACTTCAACTTAAAATTAAGTGTCTGTAAGTATACTTAAAAACACTTAAAATAATTAAAACTCAAAACAGATTCATAAATTATAGTAAATCAATTTTATGAGGACTTTTGACATGTTTTTATTATTTTAGCTTCAAATGAAGTGCGTATAAGTACTTTTTGAATTTATTCAAAAACTTCAAAAGGAATTATTTTAAATAAGTCTACTGTTTTTTAAGTTTATTTTAGGTAAAAGAATTAAGAAAATTTATTTATCTTTTTTGATTTTCTTGAGAAATTCACTGTTTTGTCTATCTTTGATGATATTGAATGTGTCATTCAGGTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTTAATTCGGTATTTGTATAACATCCTTATTAATTTAGATTTATATTGTTTAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTGGTTATCATCTATTTTTGTTGTTCAATTTTTTTGGATTTAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATAGAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATATAATGTGAACACACCGCAGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTGGAAATTCTTTCTATAAATATGTGAAATTTTTGTTCCTTTCTTTTTTGGGTTAAACTTTACTCTTTACATTTCATTATACTTTTTCAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGT</genome_strand>
        <mrna_strand>CTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAG..................................................................................GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCTTAG...........................................................................................GATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTGGTTATCATCTATTTTTGTTGTTCAATTTTTTTGGATTTAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATAGAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATATAATGTGAACACACCGCAGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAG...........................................................................................................................................................................................................................................TCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAG..........................................................................................GTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314553" ref_strand="+" ref_description="SGN-U314553        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>gtccgatcataaacctccttcgcgatgtccaaaggcaaatgataacgatgtgtattcacctggaaaatcggtaccgatctgggagatattgaaggagcaatattcgatagatcgatccaaactctgcggcaacagctcggctaatgataaagttcaggctgccggaaaagttgacggcgttgctgccagaaaaggtgtcagatctgtcacagaaggcaagccctttttttttcatattactagctccgtctattttaacgtgtctgtttggacttccattgtattttagtgctgatgattgaactttataacttcaacttaaaattaagtgtctgtaagtatacttaaaaacacttaaaataattaaaactcaaaacagattcataaattatagtaaatcaattttatgaggacttttgacatgtttttattattttagcttcaaatgaagtgcgtataagtactttttgaatttattcaaaaacttcaaaaggaattattttaaataagtctactgttttttaagtttattttaggtaaaagaattaagaaaatttatttatcttttttgattttcttgagaaattcactgttttgtctatctttgatgatattgaatgtgtcattcaggtgctgaaatgaagaagccttggtgtcaactaatagcagagtttccgcaggttttcaagtagtagtatttaaaattatttctatttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116669" stop="118071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116969" g_stop="117002" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117085" g_stop="117771" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="721" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U314553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116969" e_stop="117002"/>
          <exon e_start="117085" e_stop="117771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGATCATAAACCTCCTTCGCGATGTCCAAAGGTTCACATAGATTCATTTTCACTTCAGTTTTTTTCCTTTTTTAGTGTTTGTTGATTTTTTTTTCTCTTGTGGATTTTTTTAGGCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAGGCAAGCCCTTTTTTTTTCATATTACTAGCTCCGTCTATTTTAACGTGTCTGTTTGGACTTCCATTGTATTTTAGTGCTGATGATTGAACTTTATAACTTCAACTTAAAATTAAGTGTCTGTAAGTATACTTAAAAACACTTAAAATAATTAAAACTCAAAACAGATTCATAAATTATAGTAAATCAATTTTATGAGGACTTTTGACATGTTTTTATTATTTTAGCTTCAAATGAAGTGCGTATAAGTACTTTTTGAATTTATTCAAAAACTTCAAAAGGAATTATTTTAAATAAGTCTACTGTTTTTTAAGTTTATTTTAGGTAAAAGAATTAAGAAAATTTATTTATCTTTTTTGATTTTCTTGAGAAATTCACTGTTTTGTCTATCTTTGATGATATTGAATGTGTCATTCAGGTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTT</genome_strand>
        <mrna_strand>GTCCGATCATAAACCTCCTTCGCGATGTCCAAAG..................................................................................GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAGGCAAGCCCTTTTTTTTTCATATTACTAGCTCCGTCTATTTTAACGTGTCTGTTTGGACTTCCATTGTATTTTAGTGCTGATGATTGAACTTTATAACTTCAACTTAAAATTAAGTGTCTGTAAGTATACTTAAAAACACTTAAAATAATTAAAACTCAAAACAGATTCATAAATTATAGTAAATCAATTTTATGAGGACTTTTGACATGTTTTTATTATTTTAGCTTCAAATGAAGTGCGTATAAGTACTTTTTGAATTTATTCAAAAACTTCAAAAGGAATTATTTTAAATAAGTCTACTGTTTTTTAAGTTTATTTTAGGTAAAAGAATTAAGAAAATTTATTTATCTTTTTTGATTTTCTTGAGAAATTCACTGTTTTGTCTATCTTTGATGATATTGAATGTGTCATTCAGGTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338826" ref_strand="+" ref_description="SGN-U338826        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|10281475|gb|AAG15510.1| mutant green fluorescent protein [Cloning vector pGreenscript A](evalue: 8e-06, score=53.5)">
      <seq>gtttccggaggatcccattcggcggaaagcatatcatgaattttttcatactcaagattcaaacacaaactcgagatctctggttaaaacagaaacaattccgtccactgcaatgctgaattcaacagtggagatttttgagcaacgttttatgactggtgcgggcaaaaaccttcctgaacatgcaatgatttgcatgataaatcgcgaagaggtaaagctctaactgggagtaccgactctcctcactatttaatgttgtttcgtccgatagttgagaacgatttggaaagtcacccgataatttattagccaatatatcttcaagaagtaatataaccttaagcacataattcaatatttgccattagtgctactaaggtaaaacatgctctaagtatgcagtcctaaacttgacttccaattgattgtcttaattcttcctctcagtcagacatgagcgagctgtgcttagacgcccctgccgaggatgatccggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117520" stop="118749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117721" g_stop="117730" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117731" i_stop="117821" i_length="91">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117822" g_stop="117929" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="118" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117930" i_stop="118067" i_length="138">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118068" g_stop="118449" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="501" r_length="383" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U338826" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117721" e_stop="117730"/>
          <exon e_start="117822" e_stop="117929"/>
          <exon e_start="118068" e_stop="118449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTTAATTCGGTATTTGTATAACATCCTTATTAATTTAGATTTATATTGTTTAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTGGTTATCATCTATTTTTGTTGTTCAATTTTTTTGGATTTAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATAGAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATATAATGTGAACACACCGCAGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGT-TTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGAC</genome_strand>
        <mrna_strand>GTTTCCGGAG...........................................................................................GATCCCATTCGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTG..........................................................................................................................................AATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGCGAAGAGGTAAAGCTCTAACTGGGAGTACCGACTCTCCTCACTATTTAATGTTGTTTCGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGCCAATATATCTTCAAGAAGTAATATAACCTTAAGCACATAATTCAATATTTGCCATTAGTGCTACTAAGGTAAAACATGCTCTAAGTATGCAGTCCTAAACTTGACTTCCAATTGATTGTCTTAATTCTTCCTCTCAGTCAGACATGAGCGAGCTGTGCTTAGACGCCCCTGCCGAGGATGATCCGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338825" ref_strand="-" ref_description="SGN-U338825        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G24860.1 | Symbol: None | AAA-type ATPase family protein, contains Pfam profile PF00004: ATPase, AAA family | chr4:12801559-12808200 REVERSE | Aliases: F6I7.70, F6I7_70 (evalue: 2e-11, score=66.2) genbank/nr: gi|42567117|ref|NP_194217.2| AAA-type ATPase family protein [Arabidopsis thaliana](evalue: 2e-09, score=66.2)">
      <seq>cgataatttattagttaatatattttcaagaaataatataaccttaaacacataatttaatatttcccattagtttactaagttaaaacattctttaagtatgcagtcttaaattttacttccaattcattttcttatttcttcctctcagtcagtcatgagcgagctgtgcttagacgcccctgccgtggatgatccggacaagttattcgctaatacattgtttgaggtggaaattctttctataaatatgtgaaatttttgttcctttcttttttgggttaaactttactctttacatttcattatactttttcaggttgtattcaatgagagccggaatttgccattcattttgttcgtgaaagatgctgacaaagtaatggcaggaaacgcagaattatattcaacatttaaaactcggcttgagaaacttcttaataatgtaattattattggttcacagtcggcttgagaagcttcctgataatgtaattagtattggttcacaatagcttgagaagctttctgataatgtaattattattggtttacaattggcttgagaagcttcctgataatgtaattactattggttcacagtctgcttgagaagcttcctgataatgtaattactatatgttcacagtcggcttgagaagcttcctgataatgtaatttctattggtcaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066D13-vIatT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066D13.1" temp_strand="+" temp_description="C06HBa0066D13.1  AC216647.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066D13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117948" stop="119241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118248" g_stop="118934" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="709"/>
      <MATCH_line gen_id="C06HBa0066D13.1" gen_strand="+" ref_id="SGN-U338825" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066D13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338825" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118248" e_stop="118934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTGGAAATTCTTTCTATAAATATGTGAAATTTTTGTTCCTTTCTTTTTTGGGTTAAACTTTACTCTTTACATTTCATTATACTTTTTCAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTAGTATTGGTTCACAATAGCTTGAGAAGCTTTCTGATAATGTAATTATTATTGGTTTACAATTGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAGTCTGCTTGAGAAGCTTCCTGATAATGTAATTACTATATGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTTCTATTG</genome_strand>
        <mrna_strand>CGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTGGAAATTCTTTCTATAAATATGTGAAATTTTTGTTCCTTTCTTTTTTGGGTTAAACTTTACTCTTTACATTTCATTATACTTTTTCAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTAGTATTGGTTCACAATAGCTTGAGAAGCTTTCTGATAATGTAATTATTATTGGTTTACAATTGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAGTCTGCTTGAGAAGCTTCCTGATAATGTAATTACTATATGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTTCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="19608" PGL_stop="19761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19608" e_stop="19761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="19608" e_stop="19761" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19608" stop="19761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGGAAAAAAAATTGTAGCTTTTCTATTTTTGATGTCAGTTTGTTGGTTGCTTAACTGAGCTAGAAAATAACATGTTGGCTAAGGGTAAAGCTTTCTCTGCCTGATGTTTATTCGTTGATTGCTTAACTGAGGCAGAAAATAAGATGTTTGCT</gDNA_template>
            <first_frame> V  G  K  K  I  V  A  F  L  F  L  M  S  V  C  W  L  L  N  *  A  R  K  *  H  V  G  *  G  *  S  F  L  C  L  M  F  I  R  *  L  L  N  *  G  R  K  *  D  V  C  </first_frame>
            <second_frame>  *  E  K  K  L  *  L  F  Y  F  *  C  Q  F  V  G  C  L  T  E  L  E  N  N  M  L  A  K  G  K  A  F  S  A  *  C  L  F  V  D  C  L  T  E  A  E  N  K  M  F  A </second_frame>
            <third_frame>   R  K  K  N  C  S  F  S  I  F  D  V  S  L  L  V  A  *  L  S  *  K  I  T  C  W  L  R  V  K  L  S  L  P  D  V  Y  S  L  I  A  *  L  R  Q  K  I  R  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066D13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30300" PGL_stop="25987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30300" e_stop="29520"/>
            <exon e_start="26203" e_stop="25987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30300" e_stop="29520" e_length="781"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="29519" i_stop="26204" i_length="3316"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="26203" e_stop="25987" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30300" stop="29520"/>
              <exon start="26203" stop="25987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAGTACAAAGCTAGAGCAGAGCACCATTACACCTTTCCCATTTTCTCTACACAGATAGTAGCTTCCATTTTCCGCAAACCGCCATGGACAACAACCCTCACCAATCTCCGACTGAGGCCGCTGCGGCGGCCGCAGCAGCGGCAGCGGCGGCTCAGTCAGCCACGTATCCGTCGCAGACTCCATACCACCATCTCCTTCAGCAGCAACAGCAGCAGCTACAGATGTTTTGGACTTACCAGCGTCAAGAAATCGAGCAAGTCAATGATTTCAAAAACCACCAACTTCCCCTTGCTCGTATCAAAAAGATCATGAAAGCTGATGAAGATGTTCGTATGATCTCTGCTGAAGCTCCAGTTCTGTTCGCGAAAGCTTGTGAGCTTTTCATTCTGGAGCTCACCATCCGTTCGTGGCTTCACGCTGAGGAAAACAAGCGCAGGACTTTACAGAAGAATGACATCGCTGCGGCGATTACTCGTACTGATATTTTTGATTTTCTGGTTGACATCGTTCCTAGGGATGAAATTAAGGATGAGGGTGTTGGGCTTGGACCCGGAATTGTGGGTTCTACTGCTAGTGGTGTGCCGTACTATTACCCTCCGATGGGCCAGCCGGCTCCGGGTGGAGTGATGCTTGGTAGGCCTGCTGTTCCTGGGGTTGATCCATCAATGTATGTGCACCCTCCACCGTCACAGGCGTGGCAATCTGTGTGGCAGACTGGAGACGATAATTCCTATGCTAGTGGAGGTAGCAGTGGACAGGGTAACCTTGATGGCCAAAT : TTAAAAGATCTCGCTGCTGCCAGTTTGGAGGCTTAACAGCACATGTGAAACTGATGGTTATGATAGGGAAATGTAATTTCTTCAAATTGTGAATCCACCTTTTATGGCTTCTGTCATGGATATTGTTTGACTTTAACCGACTTGAACCTTCTGTCTGTATAAAACTTGACTTTTGTGTATTTCTAGATTTCTCTTTAAAATCCTTTTGGGGTTGCTA</gDNA_template>
            <first_frame> N  K  Y  K  A  R  A  E  H  H  Y  T  F  P  I  F  S  T  Q  I  V  A  S  I  F  R  K  P  P  W  T  T  T  L  T  N  L  R  L  R  P  L  R  R  P  Q  Q  R  Q  R  R  L  S  Q  P  R  I  R  R  R  L  H  T  T  I  S  F  S  S  N  S  S  S  Y  R  C  F  G  L  T  S  V  K  K  S  S  K  S  M  I  S  K  T  T  N  F  P  L  L  V  S  K  R  S  *  K  L  M  K  M  F  V  *  S  L  L  K  L  Q  F  C  S  R  K  L  V  S  F  S  F  W  S  S  P  S  V  R  G  F  T  L  R  K  T  S  A  G  L  Y  R  R  M  T  S  L  R  R  L  L  V  L  I  F  L  I  F  W  L  T  S  F  L  G  M  K  L  R  M  R  V  L  G  L  D  P  E  L  W  V  L  L  L  V  V  C  R  T  I  T  L  R  W  A  S  R  L  R  V  E  *  C  L  V  G  L  L  F  L  G  L  I  H  Q  C  M  C  T  L  H  R  H  R  R  G  N  L  C  G  R  L  E  T  I  I  P  M  L  V  E  V  A  V  D  R  V  T  L  M  A  K   : F  K  R  S  R  C  C  Q  F  G  G  L  T  A  H  V  K  L  M  V  M  I  G  K  C  N  F  F  K  L  *  I  H  L  L  W  L  L  S  W  I  L  F  D  F  N  R  L  E  P  S  V  C  I  K  L  D  F  C  V  F  L  D  F  S  L  K  S  F  W  G  C   </first_frame>
            <second_frame>  I  S  T  K  L  E  Q  S  T  I  T  P  F  P  F  S  L  H  R  *  *  L  P  F  S  A  N  R  H  G  Q  Q  P  S  P  I  S  D  *  G  R  C  G  G  R  S  S  G  S  G  G  S  V  S  H  V  S  V  A  D  S  I  P  P  S  P  S  A  A  T  A  A  A  T  D  V  L  D  L  P  A  S  R  N  R  A  S  Q  *  F  Q  K  P  P  T  S  P  C  S  Y  Q  K  D  H  E  S  *  *  R  C  S  Y  D  L  C  *  S  S  S  S  V  R  E  S  L  *  A  F  H  S  G  A  H  H  P  F  V  A  S  R  *  G  K  Q  A  Q  D  F  T  E  E  *  H  R  C  G  D  Y  S  Y  *  Y  F  *  F  S  G  *  H  R  S  *  G  *  N  *  G  *  G  C  W  A  W  T  R  N  C  G  F  Y  C  *  W  C  A  V  L  L  P  S  D  G  P  A  G  S  G  W  S  D  A  W  *  A  C  C  S  W  G  *  S  I  N  V  C  A  P  S  T  V  T  G  V  A  I  C  V  A  D  W  R  R  *  F  L  C  *  W  R  *  Q  W  T  G  *  P  *  W  P  N  :  L  K  D  L  A  A  A  S  L  E  A  *  Q  H  M  *  N  *  W  L  *  *  G  N  V  I  S  S  N  C  E  S  T  F  Y  G  F  C  H  G  Y  C  L  T  L  T  D  L  N  L  L  S  V  *  N  L  T  F  V  Y  F  *  I  S  L  *  N  P  F  G  V  A  </second_frame>
            <third_frame>   *  V  Q  S  *  S  R  A  P  L  H  L  S  H  F  L  Y  T  D  S  S  F  H  F  P  Q  T  A  M  D  N  N  P  H  Q  S  P  T  E  A  A  A  A  A  A  A  A  A  A  A  A  Q  S  A  T  Y  P  S  Q  T  P  Y  H  H  L  L  Q  Q  Q  Q  Q  Q  L  Q  M  F  W  T  Y  Q  R  Q  E  I  E  Q  V  N  D  F  K  N  H  Q  L  P  L  A  R  I  K  K  I  M  K  A  D  E  D  V  R  M  I  S  A  E  A  P  V  L  F  A  K  A  C  E  L  F  I  L  E  L  T  I  R  S  W  L  H  A  E  E  N  K  R  R  T  L  Q  K  N  D  I  A  A  A  I  T  R  T  D  I  F  D  F  L  V  D  I  V  P  R  D  E  I  K  D  E  G  V  G  L  G  P  G  I  V  G  S  T  A  S  G  V  P  Y  Y  Y  P  P  M  G  Q  P  A  P  G  G  V  M  L  G  R  P  A  V  P  G  V  D  P  S  M  Y  V  H  P  P  P  S  Q  A  W  Q  S  V  W  Q  T  G  D  D  N  S  Y  A  S  G  G  S  S  G  Q  G  N  L  D  G  Q  I :   *  K  I  S  L  L  P  V  W  R  L  N  S  T  C  E  T  D  G  Y  D  R  E  M  *  F  L  Q  I  V  N  P  P  F  M  A  S  V  M  D  I  V  *  L  *  P  T  *  T  F  C  L  Y  K  T  *  L  L  C  I  S  R  F  L  F  K  I  L  L  G  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30283" stop="29520"/>
                    <exon start="26203" stop="26200"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRAPLHLSHFLYTDSSFHFPQTAMDNNPHQSPTEAAAAAAAAAAAAQSATYPSQTPYHHLLQQQQQQLQMFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGVGLGPGIVGSTASGVPYYYPPMGQPAPGGVMLGRPAVPGVDPSMYVHPPPSQAWQSVWQTGDDNSYASGGSSGQGNLDGQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="36621" PGL_stop="34747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36621" e_stop="36577"/>
            <exon e_start="35794" e_stop="35709"/>
            <exon e_start="35601" e_stop="35512"/>
            <exon e_start="35366" e_stop="34747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="1.000" e_score="0.965"/>
          <exon-intron don_prob="1.000" acc_prob="0.627" e_score="0.989"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36621" e_stop="36577" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36576" i_stop="35795" i_length="782"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="35794" e_stop="35709" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35708" i_stop="35602" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="35601" e_stop="35512" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.627">
            <gDNA_intron_boundary i_start="35511" i_stop="35367" i_length="145"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="35366" e_stop="34747" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36621" stop="36577"/>
              <exon start="35794" stop="35709"/>
              <exon start="35601" stop="35512"/>
              <exon start="35366" stop="34747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGATTAAAGACAAAAAAGGGAGGATGCACAGGTTCAACTGTG : ATATTCAGAACATGACTGATCTAATAGCTGCCATAATTCAAAGAGTGGGGGATGACATTGACCGCACCAATCTTCCTCAGATTCTG : TATGAAGATGAAGATCATGACAAGGTTGTACTGGCATCAGATGGTGATCTTACAGCAGCTATTGACCATGCAAGATCTTCAGGTTGGAAG : GGACTAAAATTGCACTTGGACTATTCAGGAACAACGGGCGGTAGTTTGGATTATGCTCATCCTGAATCTGCATGGGCCTCAGCCTACAGCACTGTAGCAGCTGGTGCTGCATTAGTTGCAGGCTTAGGCGTGTTAGCATTCTTAAGGAGATCTGGTAACTAATTACTTGAAAGAAGTTCACTCTTGATAAACCAGGAATTGGAGTAGCATATTGATTCATATGAGCTCGATGAACCAATTATATTTGACTGAATGTTGGTGTTATAGAATTGGACACTTGCGCTGTTTTGGGATCATTTTACCTTTTCCTCGTCTGCAATCCAGATTTGCAGGTTTTCATTTTGAGTGATGTAAATTGCACCAAATAAATCTCTTGCGTTGTTCAAGAATGAACTGGCAACGCCACGCAAATTTTAGTGCCAAGAGTTGTCAGGAGTTTATATTTCATACGGGACTGTGATATACTGTATTTGTTACGTAAAACACATGTAATGCACCAACTATGTGTTCTAATTCTATTCTTTGCAAGGGATGGTAGACAACGTCCCTTTACGTCATTTGTACAACTGCACAACTATTGCTATCCTTAAGCTTGAGGAAAATTTTATAAGCTAAAGAGT</gDNA_template>
            <first_frame> S  R  L  K  T  K  K  G  G  C  T  G  S  T  V  :  I  F  R  T  *  L  I  *  *  L  P  *  F  K  E  W  G  M  T  L  T  A  P  I  F  L  R  F  C :   M  K  M  K  I  M  T  R  L  Y  W  H  Q  M  V  I  L  Q  Q  L  L  T  M  Q  D  L  Q  V  G  R :   D  *  N  C  T  W  T  I  Q  E  Q  R  A  V  V  W  I  M  L  I  L  N  L  H  G  P  Q  P  T  A  L  *  Q  L  V  L  H  *  L  Q  A  *  A  C  *  H  S  *  G  D  L  V  T  N  Y  L  K  E  V  H  S  *  *  T  R  N  W  S  S  I  L  I  H  M  S  S  M  N  Q  L  Y  L  T  E  C  W  C  Y  R  I  G  H  L  R  C  F  G  I  I  L  P  F  P  R  L  Q  S  R  F  A  G  F  H  F  E  *  C  K  L  H  Q  I  N  L  L  R  C  S  R  M  N  W  Q  R  H  A  N  F  S  A  K  S  C  Q  E  F  I  F  H  T  G  L  *  Y  T  V  F  V  T  *  N  T  C  N  A  P  T  M  C  S  N  S  I  L  C  K  G  W  *  T  T  S  L  Y  V  I  C  T  T  A  Q  L  L  L  S  L  S  L  R  K  I  L  *  A  K  E  </first_frame>
            <second_frame>  Q  D  *  R  Q  K  R  E  D  A  Q  V  Q  L  * :   Y  S  E  H  D  *  S  N  S  C  H  N  S  K  S  G  G  *  H  *  P  H  Q  S  S  S  D  S   : V  *  R  *  R  S  *  Q  G  C  T  G  I  R  W  *  S  Y  S  S  Y  *  P  C  K  I  F  R  L  E   : G  T  K  I  A  L  G  L  F  R  N  N  G  R  *  F  G  L  C  S  S  *  I  C  M  G  L  S  L  Q  H  C  S  S  W  C  C  I  S  C  R  L  R  R  V  S  I  L  K  E  I  W  *  L  I  T  *  K  K  F  T  L  D  K  P  G  I  G  V  A  Y  *  F  I  *  A  R  *  T  N  Y  I  *  L  N  V  G  V  I  E  L  D  T  C  A  V  L  G  S  F  Y  L  F  L  V  C  N  P  D  L  Q  V  F  I  L  S  D  V  N  C  T  K  *  I  S  C  V  V  Q  E  *  T  G  N  A  T  Q  I  L  V  P  R  V  V  R  S  L  Y  F  I  R  D  C  D  I  L  Y  L  L  R  K  T  H  V  M  H  Q  L  C  V  L  I  L  F  F  A  R  D  G  R  Q  R  P  F  T  S  F  V  Q  L  H  N  Y  C  Y  P  *  A  *  G  K  F  Y  K  L  K  S </second_frame>
            <third_frame>   K  I  K  D  K  K  G  R  M  H  R  F  N  C   : D  I  Q  N  M  T  D  L  I  A  A  I  I  Q  R  V  G  D  D  I  D  R  T  N  L  P  Q  I  L  :  Y  E  D  E  D  H  D  K  V  V  L  A  S  D  G  D  L  T  A  A  I  D  H  A  R  S  S  G  W  K  :  G  L  K  L  H  L  D  Y  S  G  T  T  G  G  S  L  D  Y  A  H  P  E  S  A  W  A  S  A  Y  S  T  V  A  A  G  A  A  L  V  A  G  L  G  V  L  A  F  L  R  R  S  G  N  *  L  L  E  R  S  S  L  L  I  N  Q  E  L  E  *  H  I  D  S  Y  E  L  D  E  P  I  I  F  D  *  M  L  V  L  *  N  W  T  L  A  L  F  W  D  H  F  T  F  S  S  S  A  I  Q  I  C  R  F  S  F  *  V  M  *  I  A  P  N  K  S  L  A  L  F  K  N  E  L  A  T  P  R  K  F  *  C  Q  E  L  S  G  V  Y  I  S  Y  G  T  V  I  Y  C  I  C  Y  V  K  H  M  *  C  T  N  Y  V  F  *  F  Y  S  L  Q  G  M  V  D  N  V  P  L  R  H  L  Y  N  C  T  T  I  A  I  L  K  L  E  E  N  F  I  S  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36619" stop="36577"/>
                    <exon start="35794" stop="35709"/>
                    <exon start="35601" stop="35512"/>
                    <exon start="35366" stop="35205"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKDKKGRMHRFNCDIQNMTDLIAAIIQRVGDDIDRTNLPQILYEDEDHDKVVLASDGDLTAAIDHARSSGWKGLKLHLDYSGTTGGSLDYAHPESAWASAYSTVAAGAALVAGLGVLAFLRRSGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34974" stop="34777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGNATQILVPRVVRSLYFIRDCDILYLLRKTHVMHQLCVLILFFARDGRQRPFTSFVQLHNYCYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40774" PGL_stop="38687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40774" e_stop="40376"/>
            <exon e_start="39380" e_stop="39212"/>
            <exon e_start="39054" e_stop="38922"/>
            <exon e_start="38843" e_stop="38687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.811" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.567" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="40774" e_stop="40376" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.811" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40375" i_stop="39381" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39380" e_stop="39212" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.567" acc_prob="0.950">
            <gDNA_intron_boundary i_start="39211" i_stop="39055" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39054" e_stop="38922" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38921" i_stop="38844" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38843" e_stop="38687" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40774" stop="40376"/>
              <exon start="39380" stop="39220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40727" stop="40376"/>
              <exon start="39380" stop="39212"/>
              <exon start="39054" stop="38922"/>
              <exon start="38843" stop="38687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCCTCTTCCATCCGTAGGGTTCCCCTCCATCTCTCCTTCCACTCCTCGCCGGAAAATCTTCTTCCGGCAGTTGACACTTGAATCCACAGCGTTATCAATATTGTTCATATTTTTCTCCTATTTTTTCGGCTGAGGGCCGTCTTTTCCTGTATTCGACCGTTGACAATTTTATCCATCTCGTGGTTCCGTTGAAATCTCAAGTACAAGTTTTTTTATTGAATAATTTGATTGCTGTAGAGTTCAGATGCCGACGAGTCAAGGAGGAGGATCATCATCGAGGAGAAGCATATCGTTGACGAACTCTTCTTCACTTGCTAAGAAGAAAGCAGCAGCGGAAAATGAAGGAGTACAACCGGATTCTGCTCACCGGAAGTCGATTTCTGTATCTCGTTCTAT : GGGACTGACTGGAGAGCGCACAGTTAAGAGATTGAGGCTGTCAAAAGCCCTTACAATACCTGATACTACAAGTATTTATGAAGCTTGCCGCAAGATGGCTGCTCGCAGAGTTGATGCTTTGTTGTTGACTGATTCAAATGCATTACTATGTGGTATCCTGACAGATAAG : GATATAGCAACGAGGGTTATTGCTCCAGAAGTTAATATACAGGAAACACCAGTTTCAAAGATAATGACGAAAAATCCGGTTTTTGTGCTTTCTGACACACTTGCTGTGGAGGCTTTGCAGAAAATGGTGCTAG : GAAAATTTAGACATTTGCCAGTTGTAGATAATGGAGAGGTCGTTGCTTTGCTTGATATTGCAAAGTGCCTTTATGATGCGATTGCTCGCCTTGAAAGGGCAGCTGAGAAAGGAAAGGCCATTGCAGCTGCCGTTGAGGGAGTTGAAAAACACTGGGG</gDNA_template>
            <first_frame> L  S  S  S  I  R  R  V  P  L  H  L  S  F  H  S  S  P  E  N  L  L  P  A  V  D  T  *  I  H  S  V  I  N  I  V  H  I  F  L  L  F  F  R  L  R  A  V  F  S  C  I  R  P  L  T  I  L  S  I  S  W  F  R  *  N  L  K  Y  K  F  F  Y  *  I  I  *  L  L  *  S  S  D  A  D  E  S  R  R  R  I  I  I  E  E  K  H  I  V  D  E  L  F  F  T  C  *  E  E  S  S  S  G  K  *  R  S  T  T  G  F  C  S  P  E  V  D  F  C  I  S  F  Y  :  G  T  D  W  R  A  H  S  *  E  I  E  A  V  K  S  P  Y  N  T  *  Y  Y  K  Y  L  *  S  L  P  Q  D  G  C  S  Q  S  *  C  F  V  V  D  *  F  K  C  I  T  M  W  Y  P  D  R  *   : G  Y  S  N  E  G  Y  C  S  R  S  *  Y  T  G  N  T  S  F  K  D  N  D  E  K  S  G  F  C  A  F  *  H  T  C  C  G  G  F  A  E  N  G  A  R :   K  I  *  T  F  A  S  C  R  *  W  R  G  R  C  F  A  *  Y  C  K  V  P  L  *  C  D  C  S  P  *  K  G  S  *  E  R  K  G  H  C  S  C  R  *  G  S  *  K  T  L  G </first_frame>
            <second_frame>  F  P  L  P  S  V  G  F  P  S  I  S  P  S  T  P  R  R  K  I  F  F  R  Q  L  T  L  E  S  T  A  L  S  I  L  F  I  F  F  S  Y  F  F  G  *  G  P  S  F  P  V  F  D  R  *  Q  F  Y  P  S  R  G  S  V  E  I  S  S  T  S  F  F  I  E  *  F  D  C  C  R  V  Q  M  P  T  S  Q  G  G  G  S  S  S  R  R  S  I  S  L  T  N  S  S  S  L  A  K  K  K  A  A  A  E  N  E  G  V  Q  P  D  S  A  H  R  K  S  I  S  V  S  R  S  M :   G  L  T  G  E  R  T  V  K  R  L  R  L  S  K  A  L  T  I  P  D  T  T  S  I  Y  E  A  C  R  K  M  A  A  R  R  V  D  A  L  L  L  T  D  S  N  A  L  L  C  G  I  L  T  D  K  :  D  I  A  T  R  V  I  A  P  E  V  N  I  Q  E  T  P  V  S  K  I  M  T  K  N  P  V  F  V  L  S  D  T  L  A  V  E  A  L  Q  K  M  V  L   : G  K  F  R  H  L  P  V  V  D  N  G  E  V  V  A  L  L  D  I  A  K  C  L  Y  D  A  I  A  R  L  E  R  A  A  E  K  G  K  A  I  A  A  A  V  E  G  V  E  K  H  W   </second_frame>
            <third_frame>   F  L  F  H  P  *  G  S  P  P  S  L  L  P  L  L  A  G  K  S  S  S  G  S  *  H  L  N  P  Q  R  Y  Q  Y  C  S  Y  F  S  P  I  F  S  A  E  G  R  L  F  L  Y  S  T  V  D  N  F  I  H  L  V  V  P  L  K  S  Q  V  Q  V  F  L  L  N  N  L  I  A  V  E  F  R  C  R  R  V  K  E  E  D  H  H  R  G  E  A  Y  R  *  R  T  L  L  H  L  L  R  R  K  Q  Q  R  K  M  K  E  Y  N  R  I  L  L  T  G  S  R  F  L  Y  L  V  L   : W  D  *  L  E  S  A  Q  L  R  D  *  G  C  Q  K  P  L  Q  Y  L  I  L  Q  V  F  M  K  L  A  A  R  W  L  L  A  E  L  M  L  C  C  *  L  I  Q  M  H  Y  Y  V  V  S  *  Q  I  R :   I  *  Q  R  G  L  L  L  Q  K  L  I  Y  R  K  H  Q  F  Q  R  *  *  R  K  I  R  F  L  C  F  L  T  H  L  L  W  R  L  C  R  K  W  C  *  :  E  N  L  D  I  C  Q  L  *  I  M  E  R  S  L  L  C  L  I  L  Q  S  A  F  M  M  R  L  L  A  L  K  G  Q  L  R  K  E  R  P  L  Q  L  P  L  R  E  L  K  N  T  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40548" stop="40376"/>
                    <exon start="39380" stop="39212"/>
                    <exon start="39054" stop="38922"/>
                    <exon start="38843" stop="38689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCCRVQMPTSQGGGSSSRRSISLTNSSSLAKKKAAAENEGVQPDSAHRKSISVSRSMGLTGERTVKRLRLSKALTIPDTTSIYEACRKMAARRVDALLLTDSNALLCGILTDKDIATRVIAPEVNIQETPVSKIMTKNPVFVLSDTLAVEALQKMVLGKFRHLPVVDNGEVVALLDIAKCLYDAIARLERAAEKGKAIAAAVEGVEKHW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46901" PGL_stop="50358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46901" e_stop="47425"/>
            <exon e_start="49303" e_stop="50358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.788" acc_prob="0.765" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46901" e_stop="47425" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.788" acc_prob="0.765">
            <gDNA_intron_boundary i_start="47426" i_stop="49302" i_length="1877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49303" e_stop="50358" e_length="1056"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46901" stop="47425"/>
              <exon start="49303" stop="50358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACCAAACTATTAACTAAAAATATTTTTGTTCAATTTAACAAATTTTAAGAGCATTTTTACCATTTTCCGTAAAAATAAGATAGAGTTTCCTAATCCCTAATTTTGTACAATTACGATTCACACACCACTTCAATTGACTGCTAAACTACTCTTATACAGTCAGATCTGTTCCTTTCTTTTCACTTTTAGTCCACCTTTTTTTTTTCTCTGGATCTTTCGCTTTTATCCCCACACTTTTCCCCATTTCTTTACTCTGTTCAAATCAACGAGCTAATTTTCCGATTAACAATGGCGGACTGGGGCCCAGTTTTGATAGCGGTGGTGCTGTTCGTGTTGTTAACTCCGGGTCTACTATTCCAGCTTCCCGGCCGTGGAAAAACGGTTGAATTCGGGAACATGCAAACCAGCGGCGTTTCCATTTTGGTCCATGCAGTAATTTACTTTGGACTCATCACTATCTTCCTCCTTGCCATTGGCGTCCATGTCTATGTCGGCTAAAGTAGTTTTTACCTTCACTATTT : ATTCACCATCATCATCTGAATCTCCTCTGTGGGCTGGTGGAACAGTTGCTCATCTGTGGACTGCTGGCAATAATTGCTCAAGCAATAAGGAAATCTATGGATCGAGTGAAGTAGGACTATAGAGAGCAAAATGGATCACTGTTCTTGGTCAGTGGACCCCAAAGGTGGCGTCAACGTCTGTGCGGTGCCAAATGTAGTCTTTCATGCTAGCAATACTAGTTTGGAGACTTTATTATTGTTCTTGAACACAAGCTTTACCAGCCAACTTGTTTGACCTTTGAAACTTTTTTCTCATACTCAGTGTTCGTCGTTTCAGGCATACTCCTGTTAGCTCTTCACGTTTTTGGCTAACACGGAAAATCATACCTTTCTTATTTGGTGTTTTGACCGGCTTGATCGGAGTATTAGCTATATTTCTATTAACCAGTAAAAAAGTAGTGTCAGAAATGAGCTTATTGTGCTGTGTCTACTCTGTTTCATGTATCTTTTCTAATCAAATGTTGTTCTCTTGGCTAGTTCTTTACCGCAGTATAATTTGGTCATAAATAAGTAAACAACTCATGCCTCCTTGTTCTTGAATGATAAAGGAAGTCTTCATCACCTTTTGTTGATGCTGATTGTGAGGTGACTAAAATTCACTCACTTATCAAAGAAACTCCTAATCTTTGATTTGTTCGATTTCTCCTGGTGTTCAACTCGGAATTCCAATAAAGATGTGTCGGGATTATGAAATAGTGTCGGAGTCAAAATTTTGACTTAGAGATTCAAAATATGAAGAAGTAGGGTTCGGATGAACCCCTTGCTTCCACCTAGCTTCTGCCCTCGTTATGAAATGGAAGAAGTTAATAATGAGGTTCCTTGTTCGCTGGTTGATCAACTATGTGTACAGAATATGTTGAAAATGAAGTATAGTAAAATGAACTTTAACCTCTCGATATATAATAAAACTACTGGATATTCAAATTTGTTTCTCATATTTTTCTCCATTGTAAAAAATTATCACTACTTTAACATTTGTTTTCCGCTACCACTATATAATGCATTGGTCCATTATCA</gDNA_template>
            <first_frame> Q  N  Q  T  I  N  *  K  Y  F  C  S  I  *  Q  I  L  R  A  F  L  P  F  S  V  K  I  R  *  S  F  L  I  P  N  F  V  Q  L  R  F  T  H  H  F  N  *  L  L  N  Y  S  Y  T  V  R  S  V  P  F  F  S  L  L  V  H  L  F  F  F  S  G  S  F  A  F  I  P  T  L  F  P  I  S  L  L  C  S  N  Q  R  A  N  F  P  I  N  N  G  G  L  G  P  S  F  D  S  G  G  A  V  R  V  V  N  S  G  S  T  I  P  A  S  R  P  W  K  N  G  *  I  R  E  H  A  N  Q  R  R  F  H  F  G  P  C  S  N  L  L  W  T  H  H  Y  L  P  P  C  H  W  R  P  C  L  C  R  L  K  *  F  L  P  S  L  F  :  I  H  H  H  H  L  N  L  L  C  G  L  V  E  Q  L  L  I  C  G  L  L  A  I  I  A  Q  A  I  R  K  S  M  D  R  V  K  *  D  Y  R  E  Q  N  G  S  L  F  L  V  S  G  P  Q  R  W  R  Q  R  L  C  G  A  K  C  S  L  S  C  *  Q  Y  *  F  G  D  F  I  I  V  L  E  H  K  L  Y  Q  P  T  C  L  T  F  E  T  F  F  S  Y  S  V  F  V  V  S  G  I  L  L  L  A  L  H  V  F  G  *  H  G  K  S  Y  L  S  Y  L  V  F  *  P  A  *  S  E  Y  *  L  Y  F  Y  *  P  V  K  K  *  C  Q  K  *  A  Y  C  A  V  S  T  L  F  H  V  S  F  L  I  K  C  C  S  L  G  *  F  F  T  A  V  *  F  G  H  K  *  V  N  N  S  C  L  L  V  L  E  *  *  R  K  S  S  S  P  F  V  D  A  D  C  E  V  T  K  I  H  S  L  I  K  E  T  P  N  L  *  F  V  R  F  L  L  V  F  N  S  E  F  Q  *  R  C  V  G  I  M  K  *  C  R  S  Q  N  F  D  L  E  I  Q  N  M  K  K  *  G  S  D  E  P  L  A  S  T  *  L  L  P  S  L  *  N  G  R  S  *  *  *  G  S  L  F  A  G  *  S  T  M  C  T  E  Y  V  E  N  E  V  *  *  N  E  L  *  P  L  D  I  *  *  N  Y  W  I  F  K  F  V  S  H  I  F  L  H  C  K  K  L  S  L  L  *  H  L  F  S  A  T  T  I  *  C  I  G  P  L  S </first_frame>
            <second_frame>  K  T  K  L  L  T  K  N  I  F  V  Q  F  N  K  F  *  E  H  F  Y  H  F  P  *  K  *  D  R  V  S  *  S  L  I  L  Y  N  Y  D  S  H  T  T  S  I  D  C  *  T  T  L  I  Q  S  D  L  F  L  S  F  H  F  *  S  T  F  F  F  S  L  D  L  S  L  L  S  P  H  F  S  P  F  L  Y  S  V  Q  I  N  E  L  I  F  R  L  T  M  A  D  W  G  P  V  L  I  A  V  V  L  F  V  L  L  T  P  G  L  L  F  Q  L  P  G  R  G  K  T  V  E  F  G  N  M  Q  T  S  G  V  S  I  L  V  H  A  V  I  Y  F  G  L  I  T  I  F  L  L  A  I  G  V  H  V  Y  V  G  *  S  S  F  Y  L  H  Y  L :   F  T  I  I  I  *  I  S  S  V  G  W  W  N  S  C  S  S  V  D  C  W  Q  *  L  L  K  Q  *  G  N  L  W  I  E  *  S  R  T  I  E  S  K  M  D  H  C  S  W  S  V  D  P  K  G  G  V  N  V  C  A  V  P  N  V  V  F  H  A  S  N  T  S  L  E  T  L  L  L  F  L  N  T  S  F  T  S  Q  L  V  *  P  L  K  L  F  S  H  T  Q  C  S  S  F  Q  A  Y  S  C  *  L  F  T  F  L  A  N  T  E  N  H  T  F  L  I  W  C  F  D  R  L  D  R  S  I  S  Y  I  S  I  N  Q  *  K  S  S  V  R  N  E  L  I  V  L  C  L  L  C  F  M  Y  L  F  *  S  N  V  V  L  L  A  S  S  L  P  Q  Y  N  L  V  I  N  K  *  T  T  H  A  S  L  F  L  N  D  K  G  S  L  H  H  L  L  L  M  L  I  V  R  *  L  K  F  T  H  L  S  K  K  L  L  I  F  D  L  F  D  F  S  W  C  S  T  R  N  S  N  K  D  V  S  G  L  *  N  S  V  G  V  K  I  L  T  *  R  F  K  I  *  R  S  R  V  R  M  N  P  L  L  P  P  S  F  C  P  R  Y  E  M  E  E  V  N  N  E  V  P  C  S  L  V  D  Q  L  C  V  Q  N  M  L  K  M  K  Y  S  K  M  N  F  N  L  S  I  Y  N  K  T  T  G  Y  S  N  L  F  L  I  F  F  S  I  V  K  N  Y  H  Y  F  N  I  C  F  P  L  P  L  Y  N  A  L  V  H  Y   </second_frame>
            <third_frame>   K  P  N  Y  *  L  K  I  F  L  F  N  L  T  N  F  K  S  I  F  T  I  F  R  K  N  K  I  E  F  P  N  P  *  F  C  T  I  T  I  H  T  P  L  Q  L  T  A  K  L  L  L  Y  S  Q  I  C  S  F  L  F  T  F  S  P  P  F  F  F  L  W  I  F  R  F  Y  P  H  T  F  P  H  F  F  T  L  F  K  S  T  S  *  F  S  D  *  Q  W  R  T  G  A  Q  F  *  *  R  W  C  C  S  C  C  *  L  R  V  Y  Y  S  S  F  P  A  V  E  K  R  L  N  S  G  T  C  K  P  A  A  F  P  F  W  S  M  Q  *  F  T  L  D  S  S  L  S  S  S  L  P  L  A  S  M  S  M  S  A  K  V  V  F  T  F  T  I   : Y  S  P  S  S  S  E  S  P  L  W  A  G  G  T  V  A  H  L  W  T  A  G  N  N  C  S  S  N  K  E  I  Y  G  S  S  E  V  G  L  *  R  A  K  W  I  T  V  L  G  Q  W  T  P  K  V  A  S  T  S  V  R  C  Q  M  *  S  F  M  L  A  I  L  V  W  R  L  Y  Y  C  S  *  T  Q  A  L  P  A  N  L  F  D  L  *  N  F  F  L  I  L  S  V  R  R  F  R  H  T  P  V  S  S  S  R  F  W  L  T  R  K  I  I  P  F  L  F  G  V  L  T  G  L  I  G  V  L  A  I  F  L  L  T  S  K  K  V  V  S  E  M  S  L  L  C  C  V  Y  S  V  S  C  I  F  S  N  Q  M  L  F  S  W  L  V  L  Y  R  S  I  I  W  S  *  I  S  K  Q  L  M  P  P  C  S  *  M  I  K  E  V  F  I  T  F  C  *  C  *  L  *  G  D  *  N  S  L  T  Y  Q  R  N  S  *  S  L  I  C  S  I  S  P  G  V  Q  L  G  I  P  I  K  M  C  R  D  Y  E  I  V  S  E  S  K  F  *  L  R  D  S  K  Y  E  E  V  G  F  G  *  T  P  C  F  H  L  A  S  A  L  V  M  K  W  K  K  L  I  M  R  F  L  V  R  W  L  I  N  Y  V  Y  R  I  C  *  K  *  S  I  V  K  *  T  L  T  S  R  Y  I  I  K  L  L  D  I  Q  I  C  F  S  Y  F  S  P  L  *  K  I  I  T  T  L  T  F  V  F  R  Y  H  Y  I  M  H  W  S  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47094" stop="47402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STFFFSLDLSLLSPHFSPFLYSVQINELIFRLTMADWGPVLIAVVLFVLLTPGLLFQLPGRGKTVEFGNMQTSGVSILVHAVIYFGLITIFLLAIGVHVYVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50078" stop="50356"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSRVRMNPLLPPSFCPRYEMEEVNNEVPCSLVDQLCVQNMLKMKYSKMNFNLSIYNKTTGYSNLFLIFFSIVKNYHYFNICFPLPLYNALVHY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49584" stop="49847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFLILSVRRFRHTPVSSSRFWLTRKIIPFLFGVLTGLIGVLAIFLLTSKKVVSEMSLLCCVYSVSCIFSNQMLFSWLVLYRSIIWS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47042" stop="47290"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNYSYTVRSVPFFSLLVHLFFFSGSFAFIPTLFPISLLCSNQRANFPINNGGLGPSFDSGGAVRVVNSGSTIPASRPWKNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59323" PGL_stop="54379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59323" e_stop="59262"/>
            <exon e_start="59026" e_stop="58932"/>
            <exon e_start="58547" e_stop="58496"/>
            <exon e_start="58235" e_stop="58040"/>
            <exon e_start="57624" e_stop="57545"/>
            <exon e_start="57441" e_stop="57331"/>
            <exon e_start="57090" e_stop="57040"/>
            <exon e_start="55802" e_stop="55736"/>
            <exon e_start="55031" e_stop="54928"/>
            <exon e_start="54841" e_stop="54737"/>
            <exon e_start="54649" e_stop="54379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.973" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.971" e_score="0.981"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59323" e_stop="59262" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59261" i_stop="59027" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59026" e_stop="58932" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.990">
            <gDNA_intron_boundary i_start="58931" i_stop="58548" i_length="384"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58547" e_stop="58496" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="58495" i_stop="58236" i_length="260"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58235" e_stop="58040" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.978">
            <gDNA_intron_boundary i_start="58039" i_stop="57625" i_length="415"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="57624" e_stop="57545" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.828" acc_prob="0.973">
            <gDNA_intron_boundary i_start="57544" i_stop="57442" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57441" e_stop="57331" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.838">
            <gDNA_intron_boundary i_start="57330" i_stop="57091" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57090" e_stop="57040" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.830" acc_prob="0.881">
            <gDNA_intron_boundary i_start="57039" i_stop="55803" i_length="1237"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55802" e_stop="55736" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.944" acc_prob="0.994">
            <gDNA_intron_boundary i_start="55735" i_stop="55032" i_length="704"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55031" e_stop="54928" e_length="104"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.339">
            <gDNA_intron_boundary i_start="54927" i_stop="54842" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="0.981">
            <gDNA_exon_boundary e_start="54841" e_stop="54737" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.971">
            <gDNA_intron_boundary i_start="54736" i_stop="54650" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="0.989">
            <gDNA_exon_boundary e_start="54649" e_stop="54379" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59323" stop="59262"/>
              <exon start="59026" stop="58932"/>
              <exon start="58547" stop="58496"/>
              <exon start="58235" stop="58040"/>
              <exon start="57624" stop="57545"/>
              <exon start="57441" stop="57331"/>
              <exon start="57090" stop="57040"/>
              <exon start="55802" stop="55736"/>
              <exon start="55031" stop="54928"/>
              <exon start="54841" stop="54737"/>
              <exon start="54649" stop="54379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACAATTGATGCTTAGTTCTCGTCTGATAAACAATTTTTTTCCTCGGTTTCTCTCACAGT : GTTGCAATGGGAAAAGTAGGTGAGGAATTGACAGAGCAAGAAACTGCCATATATGATCGCCAAATTAGGGTTTGGGGTGTTGATGCTCAGCGAAG : GTTGAGCAAATCTCATATATTTGTCAGTGGACTGAAAGGGACTGTTATTGAG : TTCTGCAAGAACATTGTCTTAGCCGGAGTCGGTAGTTTGACGCTAAATGATGATCGACTTGTAACAGAAGAGCTACTGTCTGCTAATTTTTTAGTTCCTTCTGATGAAAATGTGACCAGTGGGAAATCACTTGCTGAGCTTTGTTGTGAATCACTGAAAGATTTCAACCCCATGGTTACTGTTTCTGTTGAAAAAG : GTGTTCTGGCCAACTTCGATGTTGAATTCTTTCAGAAGTTTGATGCTGTTGTCATCAGTTGCTGCTCGCTGCTGACAAAA : AAATCGGTTAATGCAAAGTGTCGCAAGTTGCCAAGACGTGTCGCATTTTATTCTGTAGAATGCCGAGATTCCTGCGGTGAGATATTTGTTGACTTGCAGAGCTACTCCAAG : AAAAAGAATGAAGAAACAATTGAATGCCAACTACAGTATCCGAGTTTTGAG : GAAGCCATTGCAGTCCCGTGGAGATCTCTACCCAAGAGAATGTCAAAGCTATATTTTGCCATGAGAG : TTCTAGAGAGGTTTGAAGTGCTTGAAAAGCAAAATCCTCAAGATACTTCCGGAGATGACCTTCCAAATGTTCTGAAATTGAGGAAGGAACTTTGTGAGGCACAG : TGCATAAATGAATCTCAGATCCCGGTTCCTCTCCTGCAAAGGTTGTTAGCAGCTAGAGTTGAATTTCCTTCAGTTTGTGCCATTATAGGAGGAGTCCTTGGACAG : GAGGTTATAAAAGCAATATCTGGAAAAGGTGATCCTCTTAAAAACTTTTTCTTGTTTGATGCCATGGATGGCAAAGGAATAATAGAGGACATATCAGGATAATCAGTGGCTTGTGGTAAAAATTCTTTATATTAATGCTAACCTTATTTGTGGATTTGTCTCCTATTGGATGAACTTTCACTATGTAATTACTCCACTAACCATATGTTATCTCACTGATATGACTTAGTTGAGCTTTTTGAGTGTTAATCTGATTGCACTTTGGTTAAAC</gDNA_template>
            <first_frame> E  T  I  D  A  *  F  S  S  D  K  Q  F  F  S  S  V  S  L  T  V :   L  Q  W  E  K  *  V  R  N  *  Q  S  K  K  L  P  Y  M  I  A  K  L  G  F  G  V  L  M  L  S  E   : G  *  A  N  L  I  Y  L  S  V  D  *  K  G  L  L  L  S :   S  A  R  T  L  S  *  P  E  S  V  V  *  R  *  M  M  I  D  L  *  Q  K  S  Y  C  L  L  I  F  *  F  L  L  M  K  M  *  P  V  G  N  H  L  L  S  F  V  V  N  H  *  K  I  S  T  P  W  L  L  F  L  L  K  K  :  V  F  W  P  T  S  M  L  N  S  F  R  S  L  M  L  L  S  S  V  A  A  R  C  *  Q  K :   N  R  L  M  Q  S  V  A  S  C  Q  D  V  S  H  F  I  L  *  N  A  E  I  P  A  V  R  Y  L  L  T  C  R  A  T  P  R :   K  R  M  K  K  Q  L  N  A  N  Y  S  I  R  V  L  R :   K  P  L  Q  S  R  G  D  L  Y  P  R  E  C  Q  S  Y  I  L  P  *  E  :  F  *  R  G  L  K  C  L  K  S  K  I  L  K  I  L  P  E  M  T  F  Q  M  F  *  N  *  G  R  N  F  V  R  H  S :   A  *  M  N  L  R  S  R  F  L  S  C  K  G  C  *  Q  L  E  L  N  F  L  Q  F  V  P  L  *  E  E  S  L  D  R :   R  L  *  K  Q  Y  L  E  K  V  I  L  L  K  T  F  S  C  L  M  P  W  M  A  K  E  *  *  R  T  Y  Q  D  N  Q  W  L  V  V  K  I  L  Y  I  N  A  N  L  I  C  G  F  V  S  Y  W  M  N  F  H  Y  V  I  T  P  L  T  I  C  Y  L  T  D  M  T  *  L  S  F  L  S  V  N  L  I  A  L  W  L  N </first_frame>
            <second_frame>  K  Q  L  M  L  S  S  R  L  I  N  N  F  F  P  R  F  L  S  Q   : C  C  N  G  K  S  R  *  G  I  D  R  A  R  N  C  H  I  *  S  P  N  *  G  L  G  C  *  C  S  A  K  :  V  E  Q  I  S  Y  I  C  Q  W  T  E  R  D  C  Y  *   : V  L  Q  E  H  C  L  S  R  S  R  *  F  D  A  K  *  *  S  T  C  N  R  R  A  T  V  C  *  F  F  S  S  F  *  *  K  C  D  Q  W  E  I  T  C  *  A  L  L  *  I  T  E  R  F  Q  P  H  G  Y  C  F  C  *  K  R :   C  S  G  Q  L  R  C  *  I  L  S  E  V  *  C  C  C  H  Q  L  L  L  A  A  D  K   : K  I  G  *  C  K  V  S  Q  V  A  K  T  C  R  I  L  F  C  R  M  P  R  F  L  R  *  D  I  C  *  L  A  E  L  L  Q   : E  K  E  *  R  N  N  *  M  P  T  T  V  S  E  F  *   : G  S  H  C  S  P  V  E  I  S  T  Q  E  N  V  K  A  I  F  C  H  E  S :   S  R  E  V  *  S  A  *  K  A  K  S  S  R  Y  F  R  R  *  P  S  K  C  S  E  I  E  E  G  T  L  *  G  T   : V  H  K  *  I  S  D  P  G  S  S  P  A  K  V  V  S  S  *  S  *  I  S  F  S  L  C  H  Y  R  R  S  P  W  T   : G  G  Y  K  S  N  I  W  K  R  *  S  S  *  K  L  F  L  V  *  C  H  G  W  Q  R  N  N  R  G  H  I  R  I  I  S  G  L  W  *  K  F  F  I  L  M  L  T  L  F  V  D  L  S  P  I  G  *  T  F  T  M  *  L  L  H  *  P  Y  V  I  S  L  I  *  L  S  *  A  F  *  V  L  I  *  L  H  F  G  *   </second_frame>
            <third_frame>   N  N  *  C  L  V  L  V  *  *  T  I  F  F  L  G  F  S  H  S  :  V  A  M  G  K  V  G  E  E  L  T  E  Q  E  T  A  I  Y  D  R  Q  I  R  V  W  G  V  D  A  Q  R  R :   L  S  K  S  H  I  F  V  S  G  L  K  G  T  V  I  E  :  F  C  K  N  I  V  L  A  G  V  G  S  L  T  L  N  D  D  R  L  V  T  E  E  L  L  S  A  N  F  L  V  P  S  D  E  N  V  T  S  G  K  S  L  A  E  L  C  C  E  S  L  K  D  F  N  P  M  V  T  V  S  V  E  K   : G  V  L  A  N  F  D  V  E  F  F  Q  K  F  D  A  V  V  I  S  C  C  S  L  L  T  K  :  K  S  V  N  A  K  C  R  K  L  P  R  R  V  A  F  Y  S  V  E  C  R  D  S  C  G  E  I  F  V  D  L  Q  S  Y  S  K  :  K  K  N  E  E  T  I  E  C  Q  L  Q  Y  P  S  F  E  :  E  A  I  A  V  P  W  R  S  L  P  K  R  M  S  K  L  Y  F  A  M  R   : V  L  E  R  F  E  V  L  E  K  Q  N  P  Q  D  T  S  G  D  D  L  P  N  V  L  K  L  R  K  E  L  C  E  A  Q  :  C  I  N  E  S  Q  I  P  V  P  L  L  Q  R  L  L  A  A  R  V  E  F  P  S  V  C  A  I  I  G  G  V  L  G  Q  :  E  V  I  K  A  I  S  G  K  G  D  P  L  K  N  F  F  L  F  D  A  M  D  G  K  G  I  I  E  D  I  S  G  *  S  V  A  C  G  K  N  S  L  Y  *  C  *  P  Y  L  W  I  C  L  L  L  D  E  L  S  L  C  N  Y  S  T  N  H  M  L  S  H  *  Y  D  L  V  E  L  F  E  C  *  S  D  C  T  L  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59291" stop="59262"/>
                    <exon start="59026" stop="58932"/>
                    <exon start="58547" stop="58496"/>
                    <exon start="58235" stop="58040"/>
                    <exon start="57624" stop="57545"/>
                    <exon start="57441" stop="57331"/>
                    <exon start="57090" stop="57040"/>
                    <exon start="55802" stop="55736"/>
                    <exon start="55031" stop="54928"/>
                    <exon start="54841" stop="54737"/>
                    <exon start="54649" stop="54548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIFFLGFSHSVAMGKVGEELTEQETAIYDRQIRVWGVDAQRRLSKSHIFVSGLKGTVIEFCKNIVLAGVGSLTLNDDRLVTEELLSANFLVPSDENVTSGKSLAELCCESLKDFNPMVTVSVEKGVLANFDVEFFQKFDAVVISCCSLLTKKSVNAKCRKLPRRVAFYSVECRDSCGEIFVDLQSYSKKKNEETIECQLQYPSFEEAIAVPWRSLPKRMSKLYFAMRVLERFEVLEKQNPQDTSGDDLPNVLKLRKELCEAQCINESQIPVPLLQRLLAARVEFPSVCAIIGGVLGQEVIKAISGKGDPLKNFFLFDAMDGKGIIEDISG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="71105" PGL_stop="71559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71105" e_stop="71559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71105" e_stop="71559" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71105" stop="71559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACACCTACTCAGAAATTTGCACAAATCAAGGATCATCATCTCGTATTTACAGAGTCAGATGGTTCCCATGTAGAAATTCCACTGAAAGGTTGCATAATAGCAGCTGTTTCAGCGTCAAGCTTGTCCACTAGAAAATGGTAAGTTTGGAAGTACTATTATATATTGAAGTGATTTTTGTTGAACCGACAAACTGTATTAATTTTGGTCGTGTAAGTTGGTTTGAGTCATTGGTTTCAAATATAAAATCATTGGCAAGATGTGGCACTCGTAGTCCTCTTCTAACATTTTTATGAATATAGTTTTGGAGGCATCAGATCTGGAAAGAGCTATCTAGTTCTAGCTGCAATTGAGTTATAAGCTATGTCCTTTGTCATGTGGTGCTGGTGGTATAAAAGCTTGGGCAGACATAAATATGAGTGCAAAGCATTCTTCTTAGTCAAGTCTGAATTGATCT</gDNA_template>
            <first_frame> Y  T  Y  S  E  I  C  T  N  Q  G  S  S  S  R  I  Y  R  V  R  W  F  P  C  R  N  S  T  E  R  L  H  N  S  S  C  F  S  V  K  L  V  H  *  K  M  V  S  L  E  V  L  L  Y  I  E  V  I  F  V  E  P  T  N  C  I  N  F  G  R  V  S  W  F  E  S  L  V  S  N  I  K  S  L  A  R  C  G  T  R  S  P  L  L  T  F  L  *  I  *  F  W  R  H  Q  I  W  K  E  L  S  S  S  S  C  N  *  V  I  S  Y  V  L  C  H  V  V  L  V  V  *  K  L  G  Q  T  *  I  *  V  Q  S  I  L  L  S  Q  V  *  I  D   </first_frame>
            <second_frame>  T  P  T  Q  K  F  A  Q  I  K  D  H  H  L  V  F  T  E  S  D  G  S  H  V  E  I  P  L  K  G  C  I  I  A  A  V  S  A  S  S  L  S  T  R  K  W  *  V  W  K  Y  Y  Y  I  L  K  *  F  L  L  N  R  Q  T  V  L  I  L  V  V  *  V  G  L  S  H  W  F  Q  I  *  N  H  W  Q  D  V  A  L  V  V  L  F  *  H  F  Y  E  Y  S  F  G  G  I  R  S  G  K  S  Y  L  V  L  A  A  I  E  L  *  A  M  S  F  V  M  W  C  W  W  Y  K  S  L  G  R  H  K  Y  E  C  K  A  F  F  L  V  K  S  E  L  I  </second_frame>
            <third_frame>   H  L  L  R  N  L  H  K  S  R  I  I  I  S  Y  L  Q  S  Q  M  V  P  M  *  K  F  H  *  K  V  A  *  *  Q  L  F  Q  R  Q  A  C  P  L  E  N  G  K  F  G  S  T  I  I  Y  *  S  D  F  C  *  T  D  K  L  Y  *  F  W  S  C  K  L  V  *  V  I  G  F  K  Y  K  I  I  G  K  M  W  H  S  *  S  S  S  N  I  F  M  N  I  V  L  E  A  S  D  L  E  R  A  I  *  F  *  L  Q  L  S  Y  K  L  C  P  L  S  C  G  A  G  G  I  K  A  W  A  D  I  N  M  S  A  K  H  S  S  *  S  S  L  N  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066D13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="76832" PGL_stop="73003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76832" e_stop="76785"/>
            <exon e_start="76655" e_stop="76632"/>
            <exon e_start="76512" e_stop="76412"/>
            <exon e_start="75504" e_stop="75389"/>
            <exon e_start="75301" e_stop="75202"/>
            <exon e_start="74661" e_stop="74515"/>
            <exon e_start="74427" e_stop="74367"/>
            <exon e_start="74292" e_stop="74052"/>
            <exon e_start="73782" e_stop="73699"/>
            <exon e_start="73520" e_stop="73431"/>
            <exon e_start="73287" e_stop="73003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76832" e_stop="76785" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="76784" i_stop="76656" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76655" e_stop="76632" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76631" i_stop="76513" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76512" e_stop="76412" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76411" i_stop="75505" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75504" e_stop="75389" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75388" i_stop="75302" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75301" e_stop="75202" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75201" i_stop="74662" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74661" e_stop="74515" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74514" i_stop="74428" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74427" e_stop="74367" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74366" i_stop="74293" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74292" e_stop="74052" e_length="241"/>
          </exon>
          <intron i_serial="8" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74051" i_stop="73783" i_length="269"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="73782" e_stop="73699" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73698" i_stop="73521" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73520" e_stop="73431" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73430" i_stop="73288" i_length="143"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="73287" e_stop="73003" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76832" stop="76785"/>
              <exon start="76655" stop="76632"/>
              <exon start="76512" stop="76412"/>
              <exon start="75504" stop="75389"/>
              <exon start="75301" stop="75202"/>
              <exon start="74661" stop="74515"/>
              <exon start="74427" stop="74367"/>
              <exon start="74292" stop="74052"/>
              <exon start="73782" stop="73699"/>
              <exon start="73520" stop="73431"/>
              <exon start="73287" stop="73003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAACGAACTCCATTTTCCTTCTCAGTTCACAAAAAAAAATCATGG : GCAAGATTAAGATCGGAATCAATG : GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG : ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAG : AAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG : GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG : GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG : CCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGGAGGAAGAGCTGCATCATTCAACATTATCCCCAGCAGCACTGGAGCTGCAAAGGCTGTTGGAAAGGTGCTACCATCATTGAATGGAAAGTTAACAGGAATGTCTTTCCGAGTTCCAACAGTCGATGTCTCTGTGGTTGATCTCACTGTGAGGTTGGAGAAAGAAGCCACCTATGATGAAATCAAGGCTGCTATCAA : GGAGGAGTCTGAAGGAAAATTAAAGGGAATTCTTGGATACACTGAAGATGACGTGGTATCTACAGACTTTCTTGGGGACAACAG : ATCAAGTATCTTTGACGCCAAGGCTGGAATTGCTTTGAGCAAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAAATGGGCTACAG : CACACGAGTGGTCGACTTGATTAAGCACATGGCATCAGTCCAGTAAAGTGGCAGTTCCGAGTATGATGGTGCGTTACTGAGCATATTTAGAAGAGGAAAAAAGCTTTAGAATAAAGTAAAATGAGAAGCTGTTTGACGAGTTTGGAGGTGGCTGTCTGTTTACTATTGTATTTTCATTTGGGGTCTCTTGTTGGATTGTTGTTTTCCCCAATTTTCAAATGTGTCTGCAAAACTGTCTGGATATGTTGTTTTGTCTTGCTATCAATGTATAATAACGTTGGACCC</gDNA_template>
            <first_frame> L  K  R  T  P  F  S  F  S  V  H  K  K  K  S  W  :  A  R  L  R  S  E  S  M  :  V  L  E  E  L  A  D  W  W  P  G  W  L  Y  K  E  M  M  L  S  S  L  L  L  T  I  P  S  S  P  W  N  T  * :   H  T  C  L  S  M  T  V  F  T  V  N  G  R  T  M  S  S  R  L  R  M  R  R  L  F  S  L  V  R  S  L  L  L  Y  L  A  *   : E  T  Q  R  K  S  H  G  L  R  L  E  Q  S  T  S  W  S  Q  L  E  S  S  L  I  K  T  R  L  L  P  T  *  R :   V  V  L  R  K  *  L  F  L  L  L  A  R  M  H  L  C  L  L  L  V  S  M  K  R  N  T  S  Q  T  S  T  S  F  L  M  L  A  V  L  L  T  A  L  H  L  W  Q  R :   L  F  M  T  G  L  E  S  L  R  V  L  *  L  Q  F  T  P  *  L  :  P  P  R  K  L  L  M  D  H  Q  L  R  T  G  G  E  E  E  L  H  H  S  T  L  S  P  A  A  L  E  L  Q  R  L  L  E  R  C  Y  H  H  *  M  E  S  *  Q  E  C  L  S  E  F  Q  Q  S  M  S  L  W  L  I  S  L  *  G  W  R  K  K  P  P  M  M  K  S  R  L  L  S   : R  R  S  L  K  E  N  *  R  E  F  L  D  T  L  K  M  T  W  Y  L  Q  T  F  L  G  T  T   : D  Q  V  S  L  T  P  R  L  E  L  L  *  A  R  T  L  *  S  L  F  L  G  M  T  T  K  W  A  T   : A  H  E  W  S  T  *  L  S  T  W  H  Q  S  S  K  V  A  V  P  S  M  M  V  R  Y  *  A  Y  L  E  E  E  K  S  F  R  I  K  *  N  E  K  L  F  D  E  F  G  G  G  C  L  F  T  I  V  F  S  F  G  V  S  C  W  I  V  V  F  P  N  F  Q  M  C  L  Q  N  C  L  D  M  L  F  C  L  A  I  N  V  *  *  R  W  T  </first_frame>
            <second_frame>  *  N  E  L  H  F  P  S  Q  F  T  K  K  N  H  G :   Q  D  *  D  R  N  Q  W :   F  W  K  N  W  P  I  G  G  Q  G  G  S  T  K  R  *  C  *  A  R  C  C  *  R  S  L  H  H  R  G  I  H   : D  I  H  V  *  V  *  Q  C  S  R  S  M  E  E  Q  *  A  Q  G  *  G  *  E  D  S  S  L  W  *  E  A  C  Y  C  I  W  H  K  :  K  P  R  G  N  P  M  G  *  G  W  S  R  V  H  R  G  V  N  W  S  L  H  *  *  R  Q  G  C  C  P  L  E   : G  W  C  *  E  S  S  Y  F  C  S  *  Q  G  C  T  Y  V  C  C  W  C  Q  *  K  G  I  Q  A  R  P  Q  H  R  F  *  C  *  L  Y  Y  *  L  P  C  T  S  G  K   : G  Y  S  *  Q  V  W  N  R  *  G  S  Y  D  Y  S  S  L  H  N  C :   H  P  E  N  C  *  W  T  I  S  *  G  L  E  G  R  K  S  C  I  I  Q  H  Y  P  Q  Q  H  W  S  C  K  G  C  W  K  G  A  T  I  I  E  W  K  V  N  R  N  V  F  P  S  S  N  S  R  C  L  C  G  *  S  H  C  E  V  G  E  R  S  H  L  *  *  N  Q  G  C  Y  Q  :  G  G  V  *  R  K  I  K  G  N  S  W  I  H  *  R  *  R  G  I  Y  R  L  S  W  G  Q  Q  :  I  K  Y  L  *  R  Q  G  W  N  C  F  E  Q  E  L  C  E  A  C  F  L  V  *  Q  R  N  G  L  Q  :  H  T  S  G  R  L  D  *  A  H  G  I  S  P  V  K  W  Q  F  R  V  *  W  C  V  T  E  H  I  *  K  R  K  K  A  L  E  *  S  K  M  R  S  C  L  T  S  L  E  V  A  V  C  L  L  L  Y  F  H  L  G  S  L  V  G  L  L  F  S  P  I  F  K  C  V  C  K  T  V  W  I  C  C  F  V  L  L  S  M  Y  N  N  V  G  P </second_frame>
            <third_frame>   K  T  N  S  I  F  L  L  S  S  Q  K  K  I  M   : G  K  I  K  I  G  I  N   : G  F  G  R  I  G  R  L  V  A  R  V  A  L  Q  R  D  D  V  E  L  V  A  V  N  D  P  F  I  T  V  E  Y  M  :  T  Y  M  F  K  Y  D  S  V  H  G  Q  W  K  N  N  E  L  K  V  K  D  E  K  T  L  L  F  G  E  K  P  V  T  V  F  G  I  R :   N  P  E  E  I  P  W  A  E  A  G  A  E  Y  I  V  E  S  T  G  V  F  T  D  K  D  K  A  A  A  H  L  K  :  G  G  A  K  K  V  V  I  S  A  P  S  K  D  A  P  M  F  V  V  G  V  N  E  K  E  Y  K  P  D  L  N  I  V  S  N  A  S  C  T  T  N  C  L  A  P  L  A  K  :  V  I  H  D  R  F  G  I  V  E  G  L  M  T  T  V  H  S  I  T   : A  T  Q  K  T  V  D  G  P  S  A  K  D  W  R  G  G  R  A  A  S  F  N  I  I  P  S  S  T  G  A  A  K  A  V  G  K  V  L  P  S  L  N  G  K  L  T  G  M  S  F  R  V  P  T  V  D  V  S  V  V  D  L  T  V  R  L  E  K  E  A  T  Y  D  E  I  K  A  A  I  K :   E  E  S  E  G  K  L  K  G  I  L  G  Y  T  E  D  D  V  V  S  T  D  F  L  G  D  N  R :   S  S  I  F  D  A  K  A  G  I  A  L  S  K  N  F  V  K  L  V  S  W  Y  D  N  E  M  G  Y  S :   T  R  V  V  D  L  I  K  H  M  A  S  V  Q  *  S  G  S  S  E  Y  D  G  A  L  L  S  I  F  R  R  G  K  K  L  *  N  K  V  K  *  E  A  V  *  R  V  W  R  W  L  S  V  Y  Y  C  I  F  I  W  G  L  L  L  D  C  C  F  P  Q  F  S  N  V  S  A  K  L  S  G  Y  V  V  L  S  C  Y  Q  C  I  I  T  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76830" stop="76785"/>
                    <exon start="76655" stop="76632"/>
                    <exon start="76512" stop="76412"/>
                    <exon start="75504" stop="75389"/>
                    <exon start="75301" stop="75202"/>
                    <exon start="74661" stop="74515"/>
                    <exon start="74427" stop="74367"/>
                    <exon start="74292" stop="74052"/>
                    <exon start="73782" stop="73699"/>
                    <exon start="73520" stop="73431"/>
                    <exon start="73287" stop="73242"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTNSIFLLSSQKKIMGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVEYMTYMFKYDSVHGQWKNNELKVKDEKTLLFGEKPVTVFGIRNPEEIPWAEAGAEYIVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFLGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHMASVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76818" e_stop="76785"/>
            <exon e_start="76655" e_stop="76632"/>
            <exon e_start="76512" e_stop="76412"/>
            <exon e_start="75504" e_stop="75394"/>
            <exon e_start="75258" e_stop="75202"/>
            <exon e_start="74661" e_stop="74515"/>
            <exon e_start="74427" e_stop="74367"/>
            <exon e_start="74292" e_stop="74247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="0.971"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="76818" e_stop="76785" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="76784" i_stop="76656" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76655" e_stop="76632" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76631" i_stop="76513" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76512" e_stop="76412" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76411" i_stop="75505" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75504" e_stop="75394" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75393" i_stop="75259" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75258" e_stop="75202" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75201" i_stop="74662" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74661" e_stop="74515" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74514" i_stop="74428" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74427" e_stop="74367" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74366" i_stop="74293" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="74292" e_stop="74247" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76818" stop="76785"/>
              <exon start="76655" stop="76632"/>
              <exon start="76512" stop="76412"/>
              <exon start="75504" stop="75394"/>
              <exon start="75258" stop="75202"/>
              <exon start="74661" stop="74515"/>
              <exon start="74427" stop="74367"/>
              <exon start="74292" stop="74247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTCCTTCTCAGTTCACAAAAAAAAATCATGG : GCAAGATTAAGATCGGAATCAATG : GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG : ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGC : ATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG : GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG : GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG : CCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGG</gDNA_template>
            <first_frame> I  F  L  L  S  S  Q  K  K  I  M   : G  K  I  K  I  G  I  N   : G  F  G  R  I  G  R  L  V  A  R  V  A  L  Q  R  D  D  V  E  L  V  A  V  N  D  P  F  I  T  V  E  Y  M  :  T  Y  M  F  K  Y  D  S  V  H  G  Q  W  K  N  N  E  L  K  V  K  D  E  K  T  L  L  F  G  E  K  P  V  T  V  F  G  :  I  V  E  S  T  G  V  F  T  D  K  D  K  A  A  A  H  L  K  :  G  G  A  K  K  V  V  I  S  A  P  S  K  D  A  P  M  F  V  V  G  V  N  E  K  E  Y  K  P  D  L  N  I  V  S  N  A  S  C  T  T  N  C  L  A  P  L  A  K  :  V  I  H  D  R  F  G  I  V  E  G  L  M  T  T  V  H  S  I  T   : A  T  Q  K  T  V  D  G  P  S  A  K  D  W  R   </first_frame>
            <second_frame>  F  S  F  S  V  H  K  K  K  S  W  :  A  R  L  R  S  E  S  M  :  V  L  E  E  L  A  D  W  W  P  G  W  L  Y  K  E  M  M  L  S  S  L  L  L  T  I  P  S  S  P  W  N  T  * :   H  T  C  L  S  M  T  V  F  T  V  N  G  R  T  M  S  S  R  L  R  M  R  R  L  F  S  L  V  R  S  L  L  L  Y  L  A :   S  W  S  Q  L  E  S  S  L  I  K  T  R  L  L  P  T  *  R :   V  V  L  R  K  *  L  F  L  L  L  A  R  M  H  L  C  L  L  L  V  S  M  K  R  N  T  S  Q  T  S  T  S  F  L  M  L  A  V  L  L  T  A  L  H  L  W  Q  R :   L  F  M  T  G  L  E  S  L  R  V  L  *  L  Q  F  T  P  *  L  :  P  P  R  K  L  L  M  D  H  Q  L  R  T  G  G  </second_frame>
            <third_frame>   F  P  S  Q  F  T  K  K  N  H  G :   Q  D  *  D  R  N  Q  W :   F  W  K  N  W  P  I  G  G  Q  G  G  S  T  K  R  *  C  *  A  R  C  C  *  R  S  L  H  H  R  G  I  H   : D  I  H  V  *  V  *  Q  C  S  R  S  M  E  E  Q  *  A  Q  G  *  G  *  E  D  S  S  L  W  *  E  A  C  Y  C  I  W   : H  R  G  V  N  W  S  L  H  *  *  R  Q  G  C  C  P  L  E   : G  W  C  *  E  S  S  Y  F  C  S  *  Q  G  C  T  Y  V  C  C  W  C  Q  *  K  G  I  Q  A  R  P  Q  H  R  F  *  C  *  L  Y  Y  *  L  P  C  T  S  G  K   : G  Y  S  *  Q  V  W  N  R  *  G  S  Y  D  Y  S  S  L  H  N  C :   H  P  E  N  C  *  W  T  I  S  *  G  L  E  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76818" stop="76785"/>
                    <exon start="76655" stop="76632"/>
                    <exon start="76512" stop="76412"/>
                    <exon start="75504" stop="75394"/>
                    <exon start="75258" stop="75202"/>
                    <exon start="74661" stop="74515"/>
                    <exon start="74427" stop="74367"/>
                    <exon start="74292" stop="74249"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLLSSQKKIMGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVEYMTYMFKYDSVHGQWKNNELKVKDEKTLLFGEKPVTVFGIVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSAKDWR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="83681" PGL_stop="84145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83681" e_stop="84145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83681" e_stop="84145" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83681" stop="84145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATTCAAAAAAATAAAGAAATAACAGCAAGTTTCTTTGAAAACAAAATAAAGAAAATGGTGTCAAGAGTGGAAGAAGCAATGAAAATAAGGCAGCAACAGGAGGTGAAAAATTACCAAGTACAGAAGCAATTGATGCAATGCAACAAAGGAAAAACAAATAAGTTCAAGAGGAGTAGTTCTAATGTTGAAGAAGATGGTGCTTCTTCTGCTATTCTTTTGCTTGCTTGTATTGCTTGTGCCACTTCCCATCACCTATAGAATAATTAATCATAGATTATCATCACCTTGTTAACCAAAATATTAACTACATGCAGTCGCTAATAATTATCCGTCTCTGTTTCATTTTATATAACACTCTTTTTGTTTTTTTATCTGTCAAGAGTTCAATGTATGTTCCTTCTAGTCATATAATATATAGAAGATTAGTAGTAGCTCTTTTTGGCTAGAGATAGATTCATGAT</gDNA_template>
            <first_frame> S  N  S  K  K  *  R  N  N  S  K  F  L  *  K  Q  N  K  E  N  G  V  K  S  G  R  S  N  E  N  K  A  A  T  G  G  E  K  L  P  S  T  E  A  I  D  A  M  Q  Q  R  K  N  K  *  V  Q  E  E  *  F  *  C  *  R  R  W  C  F  F  C  Y  S  F  A  C  L  Y  C  L  C  H  F  P  S  P  I  E  *  L  I  I  D  Y  H  H  L  V  N  Q  N  I  N  Y  M  Q  S  L  I  I  I  R  L  C  F  I  L  Y  N  T  L  F  V  F  L  S  V  K  S  S  M  Y  V  P  S  S  H  I  I  Y  R  R  L  V  V  A  L  F  G  *  R  *  I  H  D </first_frame>
            <second_frame>  Q  I  Q  K  N  K  E  I  T  A  S  F  F  E  N  K  I  K  K  M  V  S  R  V  E  E  A  M  K  I  R  Q  Q  Q  E  V  K  N  Y  Q  V  Q  K  Q  L  M  Q  C  N  K  G  K  T  N  K  F  K  R  S  S  S  N  V  E  E  D  G  A  S  S  A  I  L  L  L  A  C  I  A  C  A  T  S  H  H  L  *  N  N  *  S  *  I  I  I  T  L  L  T  K  I  L  T  T  C  S  R  *  *  L  S  V  S  V  S  F  Y  I  T  L  F  L  F  F  Y  L  S  R  V  Q  C  M  F  L  L  V  I  *  Y  I  E  D  *  *  *  L  F  L  A  R  D  R  F  M   </second_frame>
            <third_frame>   K  F  K  K  I  K  K  *  Q  Q  V  S  L  K  T  K  *  R  K  W  C  Q  E  W  K  K  Q  *  K  *  G  S  N  R  R  *  K  I  T  K  Y  R  S  N  *  C  N  A  T  K  E  K  Q  I  S  S  R  G  V  V  L  M  L  K  K  M  V  L  L  L  L  F  F  C  L  L  V  L  L  V  P  L  P  I  T  Y  R  I  I  N  H  R  L  S  S  P  C  *  P  K  Y  *  L  H  A  V  A  N  N  Y  P  S  L  F  H  F  I  *  H  S  F  C  F  F  I  C  Q  E  F  N  V  C  S  F  *  S  Y  N  I  *  K  I  S  S  S  S  F  W  L  E  I  D  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83682" stop="83942"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIQKNKEITASFFENKIKKMVSRVEEAMKIRQQQEVKNYQVQKQLMQCNKGKTNKFKRSSSNVEEDGASSAILLLACIACATSHHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="93305" PGL_stop="89493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93305" e_stop="93085"/>
            <exon e_start="92841" e_stop="92785"/>
            <exon e_start="92658" e_stop="92572"/>
            <exon e_start="91738" e_stop="91658"/>
            <exon e_start="91508" e_stop="91396"/>
            <exon e_start="91274" e_stop="91225"/>
            <exon e_start="90558" e_stop="90272"/>
            <exon e_start="89519" e_stop="89493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.783" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.630"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93305" e_stop="93085" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.783" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93084" i_stop="92842" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92841" e_stop="92785" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92784" i_stop="92659" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92658" e_stop="92572" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.921">
            <gDNA_intron_boundary i_start="92571" i_stop="91739" i_length="833"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91738" e_stop="91658" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91657" i_stop="91509" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91508" e_stop="91396" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91395" i_stop="91275" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91274" e_stop="91225" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91224" i_stop="90559" i_length="666"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90558" e_stop="90272" e_length="287"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90271" i_stop="89520" i_length="752"/>
          </intron>
          <exon e_serial="8" e_score="0.630">
            <gDNA_exon_boundary e_start="89519" e_stop="89493" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93305" stop="93085"/>
              <exon start="92841" stop="92785"/>
              <exon start="92658" stop="92572"/>
              <exon start="91738" stop="91658"/>
              <exon start="91508" stop="91396"/>
              <exon start="91274" stop="91225"/>
              <exon start="90558" stop="90272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93149" stop="93085"/>
              <exon start="92841" stop="92785"/>
              <exon start="92658" stop="92572"/>
              <exon start="91738" stop="91658"/>
              <exon start="91508" stop="91396"/>
              <exon start="91274" stop="91225"/>
              <exon start="90558" stop="90272"/>
              <exon start="89519" stop="89493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATGGAAGGTCTTACAATAGTTGGAGCAACTCCTTGTGTTTCTTCTTCACTTCGTAGAATCTCTTCCAAAACAACCTGTTTGGCCTCCAGACTTACCCCAAAATCCGTCAAGAAGCACAGCCTAGCTGCATTGCAACCAGCATTTTATCTTTTCTCAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATG : GAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTT : GTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAG : GAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATG : GCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAG : AAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAG : GTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT : GACAAGAAAATCCAAAGAAAGAGATGG</gDNA_template>
            <first_frame> I  W  K  V  L  Q  *  L  E  Q  L  L  V  F  L  L  H  F  V  E  S  L  P  K  Q  P  V  W  P  P  D  L  P  Q  N  P  S  R  S  T  A  *  L  H  C  N  Q  H  F  I  F  S  Q  Q  M  S  P  K  G  K  L  E  L  V  Y  S  Y  P  I  W  L  L  L  W :   K  K  W  S  R  L  I  S  *  L  S  L  M  V  F  R  E  A  L :   L  E  K  L  Y  P  D  L  R  E  K  G  L  S  *  L  D  *  S  F  F  S  A  P  K  N  *  R  R :   S  I  T  R  I  Y  S  P  S  H  S  S  P  S  *  L  T  T  L  H  L  V  Q  L  S  V  W :   L  G  R  V  L  V  L  L  L  Q  H  E  S  *  *  E  Q  L  I  L  L  M  L  N  Q  A  Q  L  E  E  T  L  L  F  K  L  E   : E  M  W  C  M  E  V  I  A  P  T  M  A  S  V  K  *  :  V  F  G  L  M  K  V  N  Y  V  H  G  Q  Q  L  *  N  L  G  W  *  N  N  T  L  A  *  L  Y  D  S  S  F  K  F  W  R  F  E  L  N  H  L  F  G  I  C  N  A  K  I  Q  A  L  S  L  Y  H  F  Q  H  G  W  P  V  Y  S  K  S  L  R  A  A  H  Y  V  I  F  F  Q  V  F  H  L  M  S  N  C  R  I  K  F  V  V  L  L :   T  R  K  S  K  E  R  D   </first_frame>
            <second_frame>  Y  G  R  S  Y  N  S  W  S  N  S  L  C  F  F  F  T  S  *  N  L  F  Q  N  N  L  F  G  L  Q  T  Y  P  K  I  R  Q  E  A  Q  P  S  C  I  A  T  S  I  L  S  F  L  N  K  C  P  Q  K  A  N  *  S  S  Y  I  L  T  P  F  G  C  F  Y   : G  R  S  G  A  D  L  Y  H  D  *  A  *  W  C  S  E  R  P   : C  W  R  N  Y  I  Q  I  *  E  K  R  V  *  A  N  W  I  K  A  F  S  V  P  Q  R  I  S  G   : G  A  L  Q  G  S  T  V  Q  A  I  L  P  Q  A  D  *  L  H  Y  I  W  S  S  C  L  Y   : G  L  G  G  C  W  C  C  C  F  S  T  K  A  N  R  S  N  *  S  S  *  C  *  T  R  H  N  *  R  R  P  C  C  S  N  W  K  :  K  C  G  A  W  K  *  *  P  R  Q  W  Q  A  *  N  R :   S  L  V  *  *  R  *  I  M  C  M  G  S  S  S  R  T  L  V  G  R  I  I  P  *  R  S  Y  M  I  L  H  L  S  F  G  G  L  S  L  I  T  C  S  A  Y  V  M  Q  K  Y  K  H  C  H  C  I  I  S  S  M  V  G  R  F  I  V  R  V  *  E  R  L  T  T  *  Y  F  F  K  F  S  T  *  C  Q  T  A  E  L  N  L  *  F  F   : *  Q  E  N  P  K  K  E  M  </second_frame>
            <third_frame>   M  E  G  L  T  I  V  G  A  T  P  C  V  S  S  S  L  R  R  I  S  S  K  T  T  C  L  A  S  R  L  T  P  K  S  V  K  K  H  S  L  A  A  L  Q  P  A  F  Y  L  F  S  T  N  V  P  K  R  Q  I  R  A  R  I  F  L  P  H  L  V  A  S  M  :  E  E  V  E  Q  T  Y  I  M  I  K  P  D  G  V  Q  R  G  L  :  V  G  E  I  I  S  R  F  E  R  K  G  F  K  L  T  G  L  K  L  F  Q  C  P  K  E  L  A  E  :  E  H  Y  K  D  L  Q  S  K  P  F  F  P  K  L  I  D  Y  I  T  S  G  P  V  V  C  M  :  A  W  E  G  V  G  V  V  A  S  A  R  K  L  I  G  A  T  N  P  L  N  A  E  P  G  T  I  R  G  D  L  A  V  Q  T  G  R :   N  V  V  H  G  S  D  S  P  D  N  G  K  R  E  I   : G  L  W  F  N  E  G  E  L  C  A  W  A  A  A  L  E  P  W  L  V  E  *  Y  L  S  V  V  I  *  F  F  I  *  V  L  E  V  *  A  *  S  L  V  R  H  M  *  C  K  N  T  S  T  V  I  V  S  F  P  A  W  L  A  G  L  *  *  E  S  K  S  G  S  L  R  D  I  F  S  S  F  P  L  D  V  K  L  Q  N  *  I  C  S  S  S  :  D  K  K  I  Q  R  K  R  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93303" stop="93085"/>
                    <exon start="92841" stop="92785"/>
                    <exon start="92658" stop="92572"/>
                    <exon start="91738" stop="91658"/>
                    <exon start="91508" stop="91396"/>
                    <exon start="91274" stop="91225"/>
                    <exon start="90558" stop="90491"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEGLTIVGATPCVSSSLRRISSKTTCLASRLTPKSVKKHSLAALQPAFYLFSTNVPKRQIRARIFLPHLVASMEEVEQTYIMIKPDGVQRGLVGEIISRFERKGFKLTGLKLFQCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFNEGELCAWAAALEPWLVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90477" stop="90272"/>
                    <exon start="89519" stop="89495"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYDSSFKFWRFELNHLFGICNAKIQALSLYHFQHGWPVYSKSLRAAHYVIFFQVFHLMSNCRIKFVVLLTRKSKERD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="104256" PGL_stop="108898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104256" e_stop="104385"/>
            <exon e_start="107155" e_stop="107256"/>
            <exon e_start="107338" e_stop="107427"/>
            <exon e_start="108113" e_stop="108188"/>
            <exon e_start="108639" e_stop="108732"/>
            <exon e_start="108832" e_stop="108898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104256" e_stop="104385" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="104386" i_stop="107154" i_length="2769"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107155" e_stop="107256" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="107257" i_stop="107337" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107338" e_stop="107427" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107428" i_stop="108112" i_length="685"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108113" e_stop="108188" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108189" i_stop="108638" i_length="450"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108639" e_stop="108732" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.786" acc_prob="0.991">
            <gDNA_intron_boundary i_start="108733" i_stop="108831" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108832" e_stop="108898" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104256" stop="104385"/>
              <exon start="107155" stop="107256"/>
              <exon start="107338" stop="107427"/>
              <exon start="108113" stop="108188"/>
              <exon start="108639" stop="108732"/>
              <exon start="108832" stop="108898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGATGCTGACAAAGTAATGGCAGGAAACTCAAAATTATCTTCAACATTCAGAAGTCGGCTTGAGAAACTTCCTGATAATGTTAGTACTATTGGTTCACACGCTCATACAGATAATCACAAGGATAAG : GATAGTCCTGAGAAGACACATGACAAAGGGAAAGAGGTTGCAAAGAATTCAAAATTTCTGACAGAACTTTTCCCGAATATAGTGGCTATTCACATGCCGCAG : GATGAAGCACTTTTATCTATTTGGAAACAACAACTGGATAAAGACGCCGATGCCCTCAAAGTGAAAGAAATTTTTAATAGCTTACAAACA : GTTCTGAGTCGGACTGGATTGGAATGTAATGGACTCGAGACATTGTGCATCAAGGACCAGAATTTCTCTGTCGAAA : GTGTAGAGAAGGTTTTTGGATGGGCATTGAGCCATCACTTGATGCAGAACTCTCAAGCGGATCCTGACATGAAACTTGTTTTATCTCCTGAGAG : CATTCAGTATGGGTTGGAAATTTTACAAGCCAAGCAAAATAACACCAAGAGCTTGAAGAAGTCACTT</gDNA_template>
            <first_frame> E  R  C  *  Q  S  N  G  R  K  L  K  I  I  F  N  I  Q  K  S  A  *  E  T  S  *  *  C  *  Y  Y  W  F  T  R  S  Y  R  *  S  Q  G  *   : G  *  S  *  E  D  T  *  Q  R  E  R  G  C  K  E  F  K  I  S  D  R  T  F  P  E  Y  S  G  Y  S  H  A  A   : G  *  S  T  F  I  Y  L  E  T  T  T  G  *  R  R  R  C  P  Q  S  E  R  N  F  *  *  L  T  N   : S  S  E  S  D  W  I  G  M  *  W  T  R  D  I  V  H  Q  G  P  E  F  L  C  R  K :   C  R  E  G  F  W  M  G  I  E  P  S  L  D  A  E  L  S  S  G  S  *  H  E  T  C  F  I  S  *  E  :  H  S  V  W  V  G  N  F  T  S  Q  A  K  *  H  Q  E  L  E  E  V  T  </first_frame>
            <second_frame>  K  D  A  D  K  V  M  A  G  N  S  K  L  S  S  T  F  R  S  R  L  E  K  L  P  D  N  V  S  T  I  G  S  H  A  H  T  D  N  H  K  D  K  :  D  S  P  E  K  T  H  D  K  G  K  E  V  A  K  N  S  K  F  L  T  E  L  F  P  N  I  V  A  I  H  M  P  Q  :  D  E  A  L  L  S  I  W  K  Q  Q  L  D  K  D  A  D  A  L  K  V  K  E  I  F  N  S  L  Q  T  :  V  L  S  R  T  G  L  E  C  N  G  L  E  T  L  C  I  K  D  Q  N  F  S  V  E   : S  V  E  K  V  F  G  W  A  L  S  H  H  L  M  Q  N  S  Q  A  D  P  D  M  K  L  V  L  S  P  E  S :   I  Q  Y  G  L  E  I  L  Q  A  K  Q  N  N  T  K  S  L  K  K  S  L </second_frame>
            <third_frame>   K  M  L  T  K  *  W  Q  E  T  Q  N  Y  L  Q  H  S  E  V  G  L  R  N  F  L  I  M  L  V  L  L  V  H  T  L  I  Q  I  I  T  R  I  R :   I  V  L  R  R  H  M  T  K  G  K  R  L  Q  R  I  Q  N  F  *  Q  N  F  S  R  I  *  W  L  F  T  C  R  R :   M  K  H  F  Y  L  F  G  N  N  N  W  I  K  T  P  M  P  S  K  *  K  K  F  L  I  A  Y  K  Q :   F  *  V  G  L  D  W  N  V  M  D  S  R  H  C  A  S  R  T  R  I  S  L  S  K  :  V  *  R  R  F  L  D  G  H  *  A  I  T  *  C  R  T  L  K  R  I  L  T  *  N  L  F  Y  L  L  R   : A  F  S  M  G  W  K  F  Y  K  P  S  K  I  T  P  R  A  *  R  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104257" stop="104385"/>
                    <exon start="107155" stop="107256"/>
                    <exon start="107338" stop="107427"/>
                    <exon start="108113" stop="108188"/>
                    <exon start="108639" stop="108732"/>
                    <exon start="108832" stop="108898"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDADKVMAGNSKLSSTFRSRLEKLPDNVSTIGSHAHTDNHKDKDSPEKTHDKGKEVAKNSKFLTELFPNIVAIHMPQDEALLSIWKQQLDKDADALKVKEIFNSLQTVLSRTGLECNGLETLCIKDQNFSVESVEKVFGWALSHHLMQNSQADPDMKLVLSPESIQYGLEILQAKQNNTKSLKKSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="116854" PGL_stop="119034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117721" e_stop="117730"/>
            <exon e_start="117822" e_stop="117929"/>
            <exon e_start="118068" e_stop="118934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.965" e_score="0.900"/>
          <exon-intron don_prob="0.987" acc_prob="0.789" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="117721" e_stop="117730" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.965">
            <gDNA_intron_boundary i_start="117731" i_stop="117821" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="117822" e_stop="117929" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.789">
            <gDNA_intron_boundary i_start="117930" i_stop="118067" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118068" e_stop="118934" e_length="867"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117721" stop="117730"/>
              <exon start="117822" stop="117929"/>
              <exon start="118068" stop="118449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118248" stop="118934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338825" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCGCAG : GATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTG : AATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAGGTGGAAATTCTTTCTATAAATATGTGAAATTTTTGTTCCTTTCTTTTTTGGGTTAAACTTTACTCTTTACATTTCATTATACTTTTTCAGGTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTAGTATTGGTTCACAATAGCTTGAGAAGCTTTCTGATAATGTAATTATTATTGGTTTACAATTGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAGTCTGCTTGAGAAGCTTCCTGATAATGTAATTACTATATGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTTCTATTG</gDNA_template>
            <first_frame> V  S  A   : G  S  H  L  A  E  S  I  S  *  I  F  S  Y  S  R  F  K  H  K  L  E  I  S  G  *  N  R  N  N  S  V  H  C  N  A   : E  F  N  S  G  D  F  *  A  T  F  Y  D  W  C  G  Q  K  P  S  *  T  C  N  D  L  H  D  K  S  *  R  G  K  A  L  T  W  S  T  D  F  P  H  Y  L  M  L  F  C  P  I  V  E  N  D  L  E  S  H  P  I  I  Y  *  L  I  Y  F  Q  E  I  I  *  P  *  T  H  N  L  I  F  P  I  S  L  L  S  *  N  I  L  *  V  C  S  L  K  F  Y  F  Q  F  I  F  L  F  L  P  L  S  Q  S  *  A  S  C  A  *  T  P  L  P  W  M  I  R  T  S  Y  S  L  I  H  C  L  R  W  K  F  F  L  *  I  C  E  I  F  V  P  F  F  F  G  L  N  F  T  L  Y  I  S  L  Y  F  F  R  L  Y  S  M  R  A  G  I  C  H  S  F  C  S  *  K  M  L  T  K  *  W  Q  E  T  Q  N  Y  I  Q  H  L  K  L  G  L  R  N  F  L  I  M  *  L  L  L  V  H  S  R  L  E  K  L  P  D  N  V  I  S  I  G  S  Q  *  L  E  K  L  S  D  N  V  I  I  I  G  L  Q  L  A  *  E  A  S  *  *  C  N  Y  Y  W  F  T  V  C  L  R  S  F  L  I  M  *  L  L  Y  V  H  S  R  L  E  K  L  P  D  N  V  I  S  I  </first_frame>
            <second_frame>  F  P  Q  :  D  P  I  W  R  K  A  Y  H  E  F  F  H  T  Q  D  S  N  T  N  S  R  S  L  V  K  T  E  T  I  P  S  T  A  M  L  :  N  S  T  V  E  I  F  E  Q  R  F  M  T  G  A  G  K  N  L  P  E  H  A  M  I  C  M  I  N  R  E  E  V  K  L  *  L  G  V  P  T  F  L  T  I  *  C  C  F  V  R  *  L  R  T  I  W  K  V  T  R  *  F  I  S  *  Y  I  F  K  K  *  Y  N  L  K  H  I  I  *  Y  F  P  L  V  Y  *  V  K  T  F  F  K  Y  A  V  L  N  F  T  S  N  S  F  S  Y  F  F  L  S  V  S  H  E  R  A  V  L  R  R  P  C  R  G  *  S  G  Q  V  I  R  *  Y  I  V  *  G  G  N  S  F  Y  K  Y  V  K  F  L  F  L  S  F  L  G  *  T  L  L  F  T  F  H  Y  T  F  S  G  C  I  Q  *  E  P  E  F  A  I  H  F  V  R  E  R  C  *  Q  S  N  G  R  K  R  R  I  I  F  N  I  *  N  S  A  *  E  T  S  *  *  C  N  Y  Y  W  F  T  V  G  L  R  S  F  L  I  M  *  L  V  L  V  H  N  S  L  R  S  F  L  I  M  *  L  L  L  V  Y  N  W  L  E  K  L  P  D  N  V  I  T  I  G  S  Q  S  A  *  E  A  S  *  *  C  N  Y  Y  M  F  T  V  G  L  R  S  F  L  I  M  *  F  L  L </second_frame>
            <third_frame>   F  R  R :   I  P  F  G  G  K  H  I  M  N  F  F  I  L  K  I  Q  T  Q  T  R  D  L  W  L  K  Q  K  Q  F  R  P  L  Q  C  * :   I  Q  Q  W  R  F  L  S  N  V  L  *  L  V  R  A  K  T  F  L  N  M  Q  *  F  A  *  *  I  V  K  R  *  S  S  N  L  E  Y  R  L  S  S  L  F  N  V  V  L  S  D  S  *  E  R  F  G  K  S  P  D  N  L  L  V  N  I  F  S  R  N  N  I  T  L  N  T  *  F  N  I  S  H  *  F  T  K  L  K  H  S  L  S  M  Q  S  *  I  L  L  P  I  H  F  L  I  S  S  S  Q  S  V  M  S  E  L  C  L  D  A  P  A  V  D  D  P  D  K  L  F  A  N  T  L  F  E  V  E  I  L  S  I  N  M  *  N  F  C  S  F  L  F  W  V  K  L  Y  S  L  H  F  I  I  L  F  Q  V  V  F  N  E  S  R  N  L  P  F  I  L  F  V  K  D  A  D  K  V  M  A  G  N  A  E  L  Y  S  T  F  K  T  R  L  E  K  L  L  N  N  V  I  I  I  G  S  Q  S  A  *  E  A  S  *  *  C  N  *  Y  W  F  T  I  A  *  E  A  F  *  *  C  N  Y  Y  W  F  T  I  G  L  R  S  F  L  I  M  *  L  L  L  V  H  S  L  L  E  K  L  P  D  N  V  I  T  I  C  S  Q  S  A  *  E  A  S  *  *  C  N  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117722" stop="117730"/>
                    <exon start="117822" stop="117929"/>
                    <exon start="118068" stop="118175"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPQDPIWRKAYHEFFHTQDSNTNSRSLVKTETIPSTAMLNSTVEIFEQRFMTGAGKNLPEHAMICMINREEVKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118504" stop="118722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFCSFLFWVKLYSLHFIILFQVVFNESRNLPFILFVKDADKVMAGNAELYSTFKTRLEKLLNNVIIIGSQSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116969" e_stop="117002"/>
            <exon e_start="117085" e_stop="117771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116969" e_stop="117002" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117085" e_stop="117771" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116969" stop="117002"/>
              <exon start="117085" stop="117771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCGATCATAAACCTCCTTCGCGATGTCCAAAG : GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAGGCAAGCCCTTTTTTTTTCATATTACTAGCTCCGTCTATTTTAACGTGTCTGTTTGGACTTCCATTGTATTTTAGTGCTGATGATTGAACTTTATAACTTCAACTTAAAATTAAGTGTCTGTAAGTATACTTAAAAACACTTAAAATAATTAAAACTCAAAACAGATTCATAAATTATAGTAAATCAATTTTATGAGGACTTTTGACATGTTTTTATTATTTTAGCTTCAAATGAAGTGCGTATAAGTACTTTTTGAATTTATTCAAAAACTTCAAAAGGAATTATTTTAAATAAGTCTACTGTTTTTTAAGTTTATTTTAGGTAAAAGAATTAAGAAAATTTATTTATCTTTTTTGATTTTCTTGAGAAATTCACTGTTTTGTCTATCTTTGATGATATTGAATGTGTCATTCAGGTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTT</gDNA_template>
            <first_frame> V  R  S  *  T  S  F  A  M  S  K   : G  K  *  *  R  C  V  F  T  W  K  I  G  T  D  L  G  D  I  E  G  A  I  F  D  R  S  I  Q  T  L  R  Q  Q  L  G  *  *  *  S  S  G  C  R  K  S  *  R  R  C  C  Q  K  R  C  Q  I  C  H  R  R  Q  A  L  F  F  S  Y  Y  *  L  R  L  F  *  R  V  C  L  D  F  H  C  I  L  V  L  M  I  E  L  Y  N  F  N  L  K  L  S  V  C  K  Y  T  *  K  H  L  K  *  L  K  L  K  T  D  S  *  I  I  V  N  Q  F  Y  E  D  F  *  H  V  F  I  I  L  A  S  N  E  V  R  I  S  T  F  *  I  Y  S  K  T  S  K  G  I  I  L  N  K  S  T  V  F  *  V  Y  F  R  *  K  N  *  E  N  L  F  I  F  F  D  F  L  E  K  F  T  V  L  S  I  F  D  D  I  E  C  V  I  Q  V  L  K  *  R  S  L  G  V  N  *  *  Q  S  F  R  R  F  S  S  S  S  I  *  N  Y  F  Y  L  F  </first_frame>
            <second_frame>  S  D  H  K  P  P  S  R  C  P  K  :  A  N  D  N  D  V  Y  S  P  G  K  S  V  P  I  W  E  I  L  K  E  Q  Y  S  I  D  R  S  K  L  C  G  N  S  S  A  N  D  K  V  Q  A  A  G  K  V  D  G  V  A  A  R  K  G  V  R  S  V  T  E  G  K  P  F  F  F  H  I  T  S  S  V  Y  F  N  V  S  V  W  T  S  I  V  F  *  C  *  *  L  N  F  I  T  S  T  *  N  *  V  S  V  S  I  L  K  N  T  *  N  N  *  N  S  K  Q  I  H  K  L  *  *  I  N  F  M  R  T  F  D  M  F  L  L  F  *  L  Q  M  K  C  V  *  V  L  F  E  F  I  Q  K  L  Q  K  E  L  F  *  I  S  L  L  F  F  K  F  I  L  G  K  R  I  K  K  I  Y  L  S  F  L  I  F  L  R  N  S  L  F  C  L  S  L  M  I  L  N  V  S  F  R  C  *  N  E  E  A  L  V  S  T  N  S  R  V  S  A  G  F  Q  V  V  V  F  K  I  I  S  I  C  F </second_frame>
            <third_frame>   P  I  I  N  L  L  R  D  V  Q  R :   Q  M  I  T  M  C  I  H  L  E  N  R  Y  R  S  G  R  Y  *  R  S  N  I  R  *  I  D  P  N  S  A  A  T  A  R  L  M  I  K  F  R  L  P  E  K  L  T  A  L  L  P  E  K  V  S  D  L  S  Q  K  A  S  P  F  F  F  I  L  L  A  P  S  I  L  T  C  L  F  G  L  P  L  Y  F  S  A  D  D  *  T  L  *  L  Q  L  K  I  K  C  L  *  V  Y  L  K  T  L  K  I  I  K  T  Q  N  R  F  I  N  Y  S  K  S  I  L  *  G  L  L  T  C  F  Y  Y  F  S  F  K  *  S  A  Y  K  Y  F  L  N  L  F  K  N  F  K  R  N  Y  F  K  *  V  Y  C  F  L  S  L  F  *  V  K  E  L  R  K  F  I  Y  L  F  *  F  S  *  E  I  H  C  F  V  Y  L  *  *  Y  *  M  C  H  S  G  A  E  M  K  K  P  W  C  Q  L  I  A  E  F  P  Q  V  F  K  *  *  Y  L  K  L  F  L  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116970" stop="117002"/>
                    <exon start="117085" stop="117339"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDHKPPSRCPKANDNDVYSPGKSVPIWEILKEQYSIDRSKLCGNSSANDKVQAAGKVDGVAARKGVRSVTEGKPFFFHITSSVYFNVSVWTSIVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116923" e_stop="117002"/>
            <exon e_start="117085" e_stop="117265"/>
            <exon e_start="117681" e_stop="117730"/>
            <exon e_start="117822" e_stop="118163"/>
            <exon e_start="118399" e_stop="118476"/>
            <exon e_start="118567" e_stop="118707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.965" e_score="0.960"/>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116923" e_stop="117002" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117085" e_stop="117265" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="117266" i_stop="117680" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="117681" e_stop="117730" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.965">
            <gDNA_intron_boundary i_start="117731" i_stop="117821" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117822" e_stop="118163" e_length="342"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="118164" i_stop="118398" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118399" e_stop="118476" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118477" i_stop="118566" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118567" e_stop="118707" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116923" stop="117002"/>
              <exon start="117085" stop="117265"/>
              <exon start="117681" stop="117730"/>
              <exon start="117822" stop="118163"/>
              <exon start="118399" stop="118476"/>
              <exon start="118567" stop="118707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAG : GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAG : GTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAG : GATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTGGTTATCATCTATTTTTGTTGTTCAATTTTTTTGGATTTAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATAGAATGTGAATACACTGCAGAAATTTTGTTTGATATCTAATATAATGTGAACACACCGCAGAATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAG : TCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAG : GTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGT</gDNA_template>
            <first_frame> L  N  H  P  K  E  K  K  G  K  R  S  H  H  H  R  P  I  I  N  L  L  R  D  V  Q  R :   Q  M  I  T  M  C  I  H  L  E  N  R  Y  R  S  G  R  Y  *  R  S  N  I  R  *  I  D  P  N  S  A  A  T  A  R  L  M  I  K  F  R  L  P  E  K  L  T  A  L  L  P  E  K  V  S  D  L  S  Q  K  :  V  L  K  *  R  S  L  G  V  N  *  *  Q  S  F  R  R :   I  P  F  G  G  K  H  I  M  N  F  F  I  L  K  I  Q  T  Q  T  R  D  L  W  L  K  Q  K  Q  F  R  P  L  Q  C  W  L  S  S  I  F  V  V  Q  F  F  W  I  *  C  E  Y  T  A  E  I  L  F  D  I  *  *  N  V  N  T  L  Q  K  F  C  L  I  S  N  I  M  *  T  H  R  R  I  Q  Q  W  R  F  L  S  N  V  L  *  L  V  R  A  K  T  F  L  N  M  Q  *  F  A  *  *  I  V  K  S :   Q  S  *  A  S  C  A  *  T  P  L  P  W  M  I  R  T  S  Y  S  L  I  H  C  L  R :   L  Y  S  M  R  A  G  I  C  H  S  F  C  S  *  K  M  L  T  K  *  W  Q  E  T  Q  N  Y  I  Q  H  L  K  L  G  L  R  N  F  L  I  M  *  L  L  L   </first_frame>
            <second_frame>  S  I  T  Q  K  K  K  K  E  K  E  V  I  I  I  V  R  S  *  T  S  F  A  M  S  K   : G  K  *  *  R  C  V  F  T  W  K  I  G  T  D  L  G  D  I  E  G  A  I  F  D  R  S  I  Q  T  L  R  Q  Q  L  G  *  *  *  S  S  G  C  R  K  S  *  R  R  C  C  Q  K  R  C  Q  I  C  H  R  R :   C  *  N  E  E  A  L  V  S  T  N  S  R  V  S  A   : G  S  H  L  A  E  S  I  S  *  I  F  S  Y  S  R  F  K  H  K  L  E  I  S  G  *  N  R  N  N  S  V  H  C  N  A  G  Y  H  L  F  L  L  F  N  F  F  G  F  N  V  N  T  L  Q  K  F  C  L  I  S  N  R  M  *  I  H  C  R  N  F  V  *  Y  L  I  *  C  E  H  T  A  E  F  N  S  G  D  F  *  A  T  F  Y  D  W  C  G  Q  K  P  S  *  T  C  N  D  L  H  D  K  S  *  R   : V  S  H  E  R  A  V  L  R  R  P  C  R  G  *  S  G  Q  V  I  R  *  Y  I  V  *   : G  C  I  Q  *  E  P  E  F  A  I  H  F  V  R  E  R  C  *  Q  S  N  G  R  K  R  R  I  I  F  N  I  *  N  S  A  *  E  T  S  *  *  C  N  Y  Y  W  </second_frame>
            <third_frame>   Q  S  P  K  R  K  K  R  K  K  K  S  S  S  S  S  D  H  K  P  P  S  R  C  P  K  :  A  N  D  N  D  V  Y  S  P  G  K  S  V  P  I  W  E  I  L  K  E  Q  Y  S  I  D  R  S  K  L  C  G  N  S  S  A  N  D  K  V  Q  A  A  G  K  V  D  G  V  A  A  R  K  G  V  R  S  V  T  E   : G  A  E  M  K  K  P  W  C  Q  L  I  A  E  F  P  Q  :  D  P  I  W  R  K  A  Y  H  E  F  F  H  T  Q  D  S  N  T  N  S  R  S  L  V  K  T  E  T  I  P  S  T  A  M  L  V  I  I  Y  F  C  C  S  I  F  L  D  L  M  *  I  H  C  R  N  F  V  *  Y  L  I  E  C  E  Y  T  A  E  I  L  F  D  I  *  Y  N  V  N  T  P  Q  N  S  T  V  E  I  F  E  Q  R  F  M  T  G  A  G  K  N  L  P  E  H  A  M  I  C  M  I  N  R  E  E  :  S  V  M  S  E  L  C  L  D  A  P  A  V  D  D  P  D  K  L  F  A  N  T  L  F  E  :  V  V  F  N  E  S  R  N  L  P  F  I  L  F  V  K  D  A  D  K  V  M  A  G  N  A  E  L  Y  S  T  F  K  T  R  L  E  K  L  L  N  N  V  I  I  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116925" stop="117002"/>
                    <exon start="117085" stop="117265"/>
                    <exon start="117681" stop="117730"/>
                    <exon start="117822" stop="117974"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSPKRKKRKKKSSSSSDHKPPSRCPKANDNDVYSPGKSVPIWEILKEQYSIDRSKLCGNSSANDKVQAAGKVDGVAARKGVRSVTEGAEMKKPWCQLIAEFPQDPIWRKAYHEFFHTQDSNTNSRSLVKTETIPSTAMLVIIYFCCSIFLDLM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118047" stop="118163"/>
                    <exon start="118399" stop="118476"/>
                    <exon start="118567" stop="118707"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNVNTPQNSTVEIFEQRFMTGAGKNLPEHAMICMINREESVMSELCLDAPAVDDPDKLFANTLFEVVFNESRNLPFILFVKDADKVMAGNAELYSTFKTRLEKLLNNVIIIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="116855" e_stop="117002"/>
            <exon e_start="117085" e_stop="117265"/>
            <exon e_start="117681" e_stop="117929"/>
            <exon e_start="118068" e_stop="118476"/>
            <exon e_start="118567" e_stop="118674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.789" e_score="0.968"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="116855" e_stop="117002" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117085" e_stop="117265" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="117266" i_stop="117680" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="117681" e_stop="117929" e_length="249"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.789">
            <gDNA_intron_boundary i_start="117930" i_stop="118067" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118068" e_stop="118476" e_length="409"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118477" i_stop="118566" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118567" e_stop="118674" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116855" stop="117002"/>
              <exon start="117085" stop="117265"/>
              <exon start="117681" stop="117929"/>
              <exon start="118068" stop="118476"/>
              <exon start="118567" stop="118674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCACTCTTTTCCTCTCAAAAACAAAAAACAAAATGGTATCACAAACACAAAGAGAAAGTTCCGCCTCTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAG : GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAG : GTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAGGTTTTCAAGTAGTAGTATTTAAAATTATTTCTATTTGTTTTAATTCGGTATTTGTATAACATCCTTATTAATTTAGATTTATATTGTTTAGGATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTG : AATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAGGTAAAGCTCTAACTTGGAGTACCGACTTTCCTCACTATTTAATGTTGTTTTGTCCGATAGTTGAGAACGATTTGGAAAGTCACCCGATAATTTATTAGTTAATATATTTTCAAGAAATAATATAACCTTAAACACATAATTTAATATTTCCCATTAGTTTACTAAGTTAAAACATTCTTTAAGTATGCAGTCTTAAATTTTACTTCCAATTCATTTTCTTATTTCTTCCTCTCAGTCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAG : GTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTT</gDNA_template>
            <first_frame> S  H  S  F  P  L  K  N  K  K  Q  N  G  I  T  N  T  K  R  K  F  R  L  S  I  T  Q  K  K  K  K  E  K  E  V  I  I  I  V  R  S  *  T  S  F  A  M  S  K   : G  K  *  *  R  C  V  F  T  W  K  I  G  T  D  L  G  D  I  E  G  A  I  F  D  R  S  I  Q  T  L  R  Q  Q  L  G  *  *  *  S  S  G  C  R  K  S  *  R  R  C  C  Q  K  R  C  Q  I  C  H  R  R :   C  *  N  E  E  A  L  V  S  T  N  S  R  V  S  A  G  F  Q  V  V  V  F  K  I  I  S  I  C  F  N  S  V  F  V  *  H  P  Y  *  F  R  F  I  L  F  R  I  P  F  G  G  K  H  I  M  N  F  F  I  L  K  I  Q  T  Q  T  R  D  L  W  L  K  Q  K  Q  F  R  P  L  Q  C  * :   I  Q  Q  W  R  F  L  S  N  V  L  *  L  V  R  A  K  T  F  L  N  M  Q  *  F  A  *  *  I  V  K  R  *  S  S  N  L  E  Y  R  L  S  S  L  F  N  V  V  L  S  D  S  *  E  R  F  G  K  S  P  D  N  L  L  V  N  I  F  S  R  N  N  I  T  L  N  T  *  F  N  I  S  H  *  F  T  K  L  K  H  S  L  S  M  Q  S  *  I  L  L  P  I  H  F  L  I  S  S  S  Q  S  V  M  S  E  L  C  L  D  A  P  A  V  D  D  P  D  K  L  F  A  N  T  L  F  E  :  V  V  F  N  E  S  R  N  L  P  F  I  L  F  V  K  D  A  D  K  V  M  A  G  N  A  E  L  Y  S  T  F  K  T  R  L </first_frame>
            <second_frame>  L  T  L  F  L  S  K  T  K  N  K  M  V  S  Q  T  Q  R  E  S  S  A  S  Q  S  P  K  R  K  K  R  K  K  K  S  S  S  S  S  D  H  K  P  P  S  R  C  P  K  :  A  N  D  N  D  V  Y  S  P  G  K  S  V  P  I  W  E  I  L  K  E  Q  Y  S  I  D  R  S  K  L  C  G  N  S  S  A  N  D  K  V  Q  A  A  G  K  V  D  G  V  A  A  R  K  G  V  R  S  V  T  E   : G  A  E  M  K  K  P  W  C  Q  L  I  A  E  F  P  Q  V  F  K  *  *  Y  L  K  L  F  L  F  V  L  I  R  Y  L  Y  N  I  L  I  N  L  D  L  Y  C  L  G  S  H  L  A  E  S  I  S  *  I  F  S  Y  S  R  F  K  H  K  L  E  I  S  G  *  N  R  N  N  S  V  H  C  N  A   : E  F  N  S  G  D  F  *  A  T  F  Y  D  W  C  G  Q  K  P  S  *  T  C  N  D  L  H  D  K  S  *  R  G  K  A  L  T  W  S  T  D  F  P  H  Y  L  M  L  F  C  P  I  V  E  N  D  L  E  S  H  P  I  I  Y  *  L  I  Y  F  Q  E  I  I  *  P  *  T  H  N  L  I  F  P  I  S  L  L  S  *  N  I  L  *  V  C  S  L  K  F  Y  F  Q  F  I  F  L  F  L  P  L  S  Q  S  *  A  S  C  A  *  T  P  L  P  W  M  I  R  T  S  Y  S  L  I  H  C  L  R :   L  Y  S  M  R  A  G  I  C  H  S  F  C  S  *  K  M  L  T  K  *  W  Q  E  T  Q  N  Y  I  Q  H  L  K  L  G   </second_frame>
            <third_frame>   S  L  F  S  S  Q  K  Q  K  T  K  W  Y  H  K  H  K  E  K  V  P  P  L  N  H  P  K  E  K  K  G  K  R  S  H  H  H  R  P  I  I  N  L  L  R  D  V  Q  R :   Q  M  I  T  M  C  I  H  L  E  N  R  Y  R  S  G  R  Y  *  R  S  N  I  R  *  I  D  P  N  S  A  A  T  A  R  L  M  I  K  F  R  L  P  E  K  L  T  A  L  L  P  E  K  V  S  D  L  S  Q  K  :  V  L  K  *  R  S  L  G  V  N  *  *  Q  S  F  R  R  F  S  S  S  S  I  *  N  Y  F  Y  L  F  *  F  G  I  C  I  T  S  L  L  I  *  I  Y  I  V  *  D  P  I  W  R  K  A  Y  H  E  F  F  H  T  Q  D  S  N  T  N  S  R  S  L  V  K  T  E  T  I  P  S  T  A  M  L  :  N  S  T  V  E  I  F  E  Q  R  F  M  T  G  A  G  K  N  L  P  E  H  A  M  I  C  M  I  N  R  E  E  V  K  L  *  L  G  V  P  T  F  L  T  I  *  C  C  F  V  R  *  L  R  T  I  W  K  V  T  R  *  F  I  S  *  Y  I  F  K  K  *  Y  N  L  K  H  I  I  *  Y  F  P  L  V  Y  *  V  K  T  F  F  K  Y  A  V  L  N  F  T  S  N  S  F  S  Y  F  F  L  S  V  S  H  E  R  A  V  L  R  R  P  C  R  G  *  S  G  Q  V  I  R  *  Y  I  V  *   : G  C  I  Q  *  E  P  E  F  A  I  H  F  V  R  E  R  C  *  Q  S  N  G  R  K  R  R  I  I  F  N  I  *  N  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116856" stop="117002"/>
                    <exon start="117085" stop="117265"/>
                    <exon start="117681" stop="117742"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLFLSKTKNKMVSQTQRESSASQSPKRKKRKKKSSSSSDHKPPSRCPKANDNDVYSPGKSVPIWEILKEQYSIDRSKLCGNSSANDKVQAAGKVDGVAARKGVRSVTEGAEMKKPWCQLIAEFPQVFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118360" stop="118476"/>
                    <exon start="118567" stop="118674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLPIHFLISSSQSVMSELCLDAPAVDDPDKLFANTLFEVVFNESRNLPFILFVKDADKVMAGNAELYSTFKTRL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117822" stop="117929"/>
                    <exon start="118068" stop="118175"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPIWRKAYHEFFHTQDSNTNSRSLVKTETIPSTAMLNSTVEIFEQRFMTGAGKNLPEHAMICMINREEVKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="116854" e_stop="117002"/>
            <exon e_start="117085" e_stop="117265"/>
            <exon e_start="117681" e_stop="117730"/>
            <exon e_start="117822" e_stop="117929"/>
            <exon e_start="118068" e_stop="118163"/>
            <exon e_start="118399" e_stop="118476"/>
            <exon e_start="118567" e_stop="119034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116854" e_stop="117002" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117003" i_stop="117084" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117085" e_stop="117265" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="117266" i_stop="117680" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117681" e_stop="117730" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.965">
            <gDNA_intron_boundary i_start="117731" i_stop="117821" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117822" e_stop="117929" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.789">
            <gDNA_intron_boundary i_start="117930" i_stop="118067" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118068" e_stop="118163" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="118164" i_stop="118398" i_length="235"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118399" e_stop="118476" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118477" i_stop="118566" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118567" e_stop="119034" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116854" stop="117002"/>
              <exon start="117085" stop="117265"/>
              <exon start="117681" stop="117730"/>
              <exon start="117822" stop="117929"/>
              <exon start="118068" stop="118163"/>
              <exon start="118399" stop="118476"/>
              <exon start="118567" stop="119034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCACTCTTTTCCTCTCAAAAACAAAAAACAAAATGGTATCACAAACACAAAGAGAAAGTTCCGCCTCTCAATCACCCAAAAGAAAAAAAAGGAAAAAGAAGTCATCATCATCGTCCGATCATAAACCTCCTTCGCGATGTCCAAAG : GCAAATGATAACGATGTGTATTCACCTGGAAAATCGGTACCGATCTGGGAGATATTGAAGGAGCAATATTCGATAGATCGATCCAAACTCTGCGGCAACAGCTCGGCTAATGATAAAGTTCAGGCTGCCGGAAAAGTTGACGGCGTTGCTGCCAGAAAAGGTGTCAGATCTGTCACAGAAG : GTGCTGAAATGAAGAAGCCTTGGTGTCAACTAATAGCAGAGTTTCCGCAG : GATCCCATTTGGCGGAAAGCATATCATGAATTTTTTCATACTCAAGATTCAAACACAAACTCGAGATCTCTGGTTAAAACAGAAACAATTCCGTCCACTGCAATGCTG : AATTCAACAGTGGAGATTTTTGAGCAACGTTTTATGACTGGTGCGGGCAAAAACCTTCCTGAACATGCAATGATTTGCATGATAAATCGTGAAGAG : TCAGTCATGAGCGAGCTGTGCTTAGACGCCCCTGCCGTGGATGATCCGGACAAGTTATTCGCTAATACATTGTTTGAG : GTTGTATTCAATGAGAGCCGGAATTTGCCATTCATTTTGTTCGTGAAAGATGCTGACAAAGTAATGGCAGGAAACGCAGAATTATATTCAACATTTAAAACTCGGCTTGAGAAACTTCTTAATAATGTAATTATTATTGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTAGTATTGGTTCACAATAGCTTGAGAAGCTTTCTGATAATGTAATTATTATTGGTTTACAATTGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAGTCTGCTTGAGAAGCTTCCTGATAATGTAATTACTATATGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTTCTATTGGTTCACAGTCGGCTTGAAAAGCTTCCCGATAATGTAATTACTAATGGTTCACAGTCGGCTTGAGAAGCTTCCTGATAATGTAATTACTATTGGTTCACAC</gDNA_template>
            <first_frame> L  S  L  F  S  S  Q  K  Q  K  T  K  W  Y  H  K  H  K  E  K  V  P  P  L  N  H  P  K  E  K  K  G  K  R  S  H  H  H  R  P  I  I  N  L  L  R  D  V  Q  R :   Q  M  I  T  M  C  I  H  L  E  N  R  Y  R  S  G  R  Y  *  R  S  N  I  R  *  I  D  P  N  S  A  A  T  A  R  L  M  I  K  F  R  L  P  E  K  L  T  A  L  L  P  E  K  V  S  D  L  S  Q  K  :  V  L  K  *  R  S  L  G  V  N  *  *  Q  S  F  R  R :   I  P  F  G  G  K  H  I  M  N  F  F  I  L  K  I  Q  T  Q  T  R  D  L  W  L  K  Q  K  Q  F  R  P  L  Q  C  * :   I  Q  Q  W  R  F  L  S  N  V  L  *  L  V  R  A  K  T  F  L  N  M  Q  *  F  A  *  *  I  V  K  S :   Q  S  *  A  S  C  A  *  T  P  L  P  W  M  I  R  T  S  Y  S  L  I  H  C  L  R :   L  Y  S  M  R  A  G  I  C  H  S  F  C  S  *  K  M  L  T  K  *  W  Q  E  T  Q  N  Y  I  Q  H  L  K  L  G  L  R  N  F  L  I  M  *  L  L  L  V  H  S  R  L  E  K  L  P  D  N  V  I  S  I  G  S  Q  *  L  E  K  L  S  D  N  V  I  I  I  G  L  Q  L  A  *  E  A  S  *  *  C  N  Y  Y  W  F  T  V  C  L  R  S  F  L  I  M  *  L  L  Y  V  H  S  R  L  E  K  L  P  D  N  V  I  S  I  G  S  Q  S  A  *  K  A  S  R  *  C  N  Y  *  W  F  T  V  G  L  R  S  F  L  I  M  *  L  L  L  V  H   </first_frame>
            <second_frame>  S  H  S  F  P  L  K  N  K  K  Q  N  G  I  T  N  T  K  R  K  F  R  L  S  I  T  Q  K  K  K  K  E  K  E  V  I  I  I  V  R  S  *  T  S  F  A  M  S  K   : G  K  *  *  R  C  V  F  T  W  K  I  G  T  D  L  G  D  I  E  G  A  I  F  D  R  S  I  Q  T  L  R  Q  Q  L  G  *  *  *  S  S  G  C  R  K  S  *  R  R  C  C  Q  K  R  C  Q  I  C  H  R  R :   C  *  N  E  E  A  L  V  S  T  N  S  R  V  S  A   : G  S  H  L  A  E  S  I  S  *  I  F  S  Y  S  R  F  K  H  K  L  E  I  S  G  *  N  R  N  N  S  V  H  C  N  A   : E  F  N  S  G  D  F  *  A  T  F  Y  D  W  C  G  Q  K  P  S  *  T  C  N  D  L  H  D  K  S  *  R   : V  S  H  E  R  A  V  L  R  R  P  C  R  G  *  S  G  Q  V  I  R  *  Y  I  V  *   : G  C  I  Q  *  E  P  E  F  A  I  H  F  V  R  E  R  C  *  Q  S  N  G  R  K  R  R  I  I  F  N  I  *  N  S  A  *  E  T  S  *  *  C  N  Y  Y  W  F  T  V  G  L  R  S  F  L  I  M  *  L  V  L  V  H  N  S  L  R  S  F  L  I  M  *  L  L  L  V  Y  N  W  L  E  K  L  P  D  N  V  I  T  I  G  S  Q  S  A  *  E  A  S  *  *  C  N  Y  Y  M  F  T  V  G  L  R  S  F  L  I  M  *  F  L  L  V  H  S  R  L  E  K  L  P  D  N  V  I  T  N  G  S  Q  S  A  *  E  A  S  *  *  C  N  Y  Y  W  F  T  </second_frame>
            <third_frame>   L  T  L  F  L  S  K  T  K  N  K  M  V  S  Q  T  Q  R  E  S  S  A  S  Q  S  P  K  R  K  K  R  K  K  K  S  S  S  S  S  D  H  K  P  P  S  R  C  P  K  :  A  N  D  N  D  V  Y  S  P  G  K  S  V  P  I  W  E  I  L  K  E  Q  Y  S  I  D  R  S  K  L  C  G  N  S  S  A  N  D  K  V  Q  A  A  G  K  V  D  G  V  A  A  R  K  G  V  R  S  V  T  E   : G  A  E  M  K  K  P  W  C  Q  L  I  A  E  F  P  Q  :  D  P  I  W  R  K  A  Y  H  E  F  F  H  T  Q  D  S  N  T  N  S  R  S  L  V  K  T  E  T  I  P  S  T  A  M  L  :  N  S  T  V  E  I  F  E  Q  R  F  M  T  G  A  G  K  N  L  P  E  H  A  M  I  C  M  I  N  R  E  E  :  S  V  M  S  E  L  C  L  D  A  P  A  V  D  D  P  D  K  L  F  A  N  T  L  F  E  :  V  V  F  N  E  S  R  N  L  P  F  I  L  F  V  K  D  A  D  K  V  M  A  G  N  A  E  L  Y  S  T  F  K  T  R  L  E  K  L  L  N  N  V  I  I  I  G  S  Q  S  A  *  E  A  S  *  *  C  N  *  Y  W  F  T  I  A  *  E  A  F  *  *  C  N  Y  Y  W  F  T  I  G  L  R  S  F  L  I  M  *  L  L  L  V  H  S  L  L  E  K  L  P  D  N  V  I  T  I  C  S  Q  S  A  *  E  A  S  *  *  C  N  F  Y  W  F  T  V  G  L  K  S  F  P  I  M  *  L  L  M  V  H  S  R  L  E  K  L  P  D  N  V  I  T  I  G  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066D13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116856" stop="117002"/>
                    <exon start="117085" stop="117265"/>
                    <exon start="117681" stop="117730"/>
                    <exon start="117822" stop="117929"/>
                    <exon start="118068" stop="118163"/>
                    <exon start="118399" stop="118476"/>
                    <exon start="118567" stop="118722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLFLSKTKNKMVSQTQRESSASQSPKRKKRKKKSSSSSDHKPPSRCPKANDNDVYSPGKSVPIWEILKEQYSIDRSKLCGNSSANDKVQAAGKVDGVAARKGVRSVTEGAEMKKPWCQLIAEFPQDPIWRKAYHEFFHTQDSNTNSRSLVKTETIPSTAMLNSTVEIFEQRFMTGAGKNLPEHAMICMINREESVMSELCLDAPAVDDPDKLFANTLFEVVFNESRNLPFILFVKDADKVMAGNAELYSTFKTRLEKLLNNVIIIGSQSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 118656 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 5932 bytes was the average size of a spliced alignment
$ 20984 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1748 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 05:40:52
-->
