<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:40:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339912" ref_strand="+" ref_description="SGN-U339912        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phytochrome kinase substrate 1 (PKS1), identical to Swiss-Prot:Q9SWI1 phytochrome kinase substrate 1 (Arabidopsis thaliana) | chr2:854946-856537 REVERSE | Aliases: T17M13.12, T17M13_12(evalue: 1e-08, score=57.8) genbank/nr: gi|18395453|ref|NP_565292.1| phytochrome kinase substrate 1 (PKS1) [Arabidopsis thaliana] gi|20532217|sp|Q9SWI1|PKS1_ARATH Phytochrome kinase substrate 1 gi|25369773|pir||E84442 hypothetical protein At2g02950 [imported] - Arabidopsis thaliana gi|3461819|gb|AAC32913.1| expressed protein [Arabidopsis thaliana] gi|13272387|gb|AAK17132.1| unknown protein [Arabidopsis thaliana] gi|15450681|gb|AAK96612.1| At2g02950/T17M13.12 [Arabidopsis thaliana] gi|17380616|gb|AAL36071.1| At2g02950/T17M13.12 [Arabidopsis thaliana](evalue: 8e-07, score=57.8)">
      <seq>aggatagttttcacaagtctataaactccttcctattttataggttatgagctttctaattatctttcgtctcttgtttgttggtaaactgtttttttctgagtttcgttctgtcccttcctgtctcaaaggttatcatataactcttttacactagtaaagatattaacccataaagctcctcccagaaatcgttgcttctggatcaaactctcttcaaaattttcatcaaacaacagaaacctgaagcatttcgtctccatggaagccaataataatgtaaccagccttcgcgtagcatcattttcttgttaccttagcaaccctgacgatcagagttttttacataaactaggaggctcttatgaagagccttattctgctgttgttttaccacctgagaaccccttttctgtaagagctactaaggcacctactagtaaaccatcctcgaataaccctcgagacagccttgccaatcttcgcgttgagtctttctcttcttatctcaagactgatgaagacaactttgcatttaagacctcaggtgcttctcctgttcaagatcctactattgcatttgttttttctcagcaaactttggttagcactcagaaacaccaagaaagaaccaagttgaaagatggggaactaagcatatttggagctgacaagtatttcaacaagaaactggaatatggagctgccgctacatctgtggtgaagtatggcgggcagatgaacaacgggatggtggatcttccccacccgaaaccaagttcccagacaggaactccaagcatccattcagaagcaagcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10181" stop="8761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9884" g_stop="9061" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U339912" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9884" e_stop="9061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAGTTTTCACAAGTCTATAAACTCCTTCCTATTTTATAGGTTATGAGCTTTCTAATTATCTTTCGTCTCTTGTTTGTTGGTAAACTGTTTTTTTCTGAGTTTCGTTCTGTCCCTTCCTGTCTCAAAGGTTATCATATAACTCTTTTACACTAGTAAAGATATTAACCCATAAAGCTCCTCCCAGAAATCGTTGCTTCTGGATCAAACTCTCTTCAAAATTTTCATCAAACAACAGAAACCTGAAGCATTTCGTCTCCATGGAAGCCAATAATAATGTAACCAGCCTTCGCGTAGCATCATTTTCTTGTTACCTTAGCAACCCTGACGATCAGAGTTTTTTACATAAACTAGGAGGCTCTTATGAAGAGCCTTATTCTGCTGTTGTTTTACCACCTGAGAACCCCTTTTCTGTAAGAGCTACTAAGGCACCTACTAGTAAACCATCCTCGAATAACCCTCGAGACAGCCTTGCCAATCTTCGCGTTGAGTCTTTCTCTTCTTATCTCAAGACTGATGAAGACAACTTTGCATTTAAGACCTCAGGTGCTTCTCCTGTTCAAGATCCTACTATTGCATTTGTTTTTTCTCAGCAAACTTTGGTTAGCACTCAGAAACACCAAGAAAGAACCAAGTTGAAAGATGGGGAACTAAGCATATTTGGAGCTGACAAGTATTTCAACAAGAAACTGGAATATGGAGCTGCCGCTACATCTGTGGTGAAGTATGGCGGGCAGATGAACAACGGGATGGTGGATCTTCCCCACCCGAAACCAAGTTCCCAGACAGGAACTCCAAGCATCCATTCAGAAGCAAGCAGTTT</genome_strand>
        <mrna_strand>AGGATAGTTTTCACAAGTCTATAAACTCCTTCCTATTTTATAGGTTATGAGCTTTCTAATTATCTTTCGTCTCTTGTTTGTTGGTAAACTGTTTTTTTCTGAGTTTCGTTCTGTCCCTTCCTGTCTCAAAGGTTATCATATAACTCTTTTACACTAGTAAAGATATTAACCCATAAAGCTCCTCCCAGAAATCGTTGCTTCTGGATCAAACTCTCTTCAAAATTTTCATCAAACAACAGAAACCTGAAGCATTTCGTCTCCATGGAAGCCAATAATAATGTAACCAGCCTTCGCGTAGCATCATTTTCTTGTTACCTTAGCAACCCTGACGATCAGAGTTTTTTACATAAACTAGGAGGCTCTTATGAAGAGCCTTATTCTGCTGTTGTTTTACCACCTGAGAACCCCTTTTCTGTAAGAGCTACTAAGGCACCTACTAGTAAACCATCCTCGAATAACCCTCGAGACAGCCTTGCCAATCTTCGCGTTGAGTCTTTCTCTTCTTATCTCAAGACTGATGAAGACAACTTTGCATTTAAGACCTCAGGTGCTTCTCCTGTTCAAGATCCTACTATTGCATTTGTTTTTTCTCAGCAAACTTTGGTTAGCACTCAGAAACACCAAGAAAGAACCAAGTTGAAAGATGGGGAACTAAGCATATTTGGAGCTGACAAGTATTTCAACAAGAAACTGGAATATGGAGCTGCCGCTACATCTGTGGTGAAGTATGGCGGGCAGATGAACAACGGGATGGTGGATCTTCCCCACCCGAAACCAAGTTCCCAGACAGGAACTCCAAGCATCCATTCAGAAGCAAGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341288" ref_strand="+" ref_description="SGN-U341288        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G26850.3 | Symbol: None | dehydration-responsive family protein, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr1:9300860-9304120 REVERSE | Aliases: None (evalue: 2e-108, score=388) genbank/nr: gi|47824983|gb|AAT38756.1| putative methyltransferase [Solanum demissum] (evalue: 1e-112, score=409)">
      <seq>aacattgctgcttctctgatatccagttgatcatggcaaccaaaaggaaatccaggggataacagaaataaaagctttttaccatcattacttgtcatagctgcactttgttgtttcttctatgttcttggagtgtggaaaagaagtggttttgggaagggagacagcatagcacttgaaataacaaagaaggcagaggactgcggtatccttcctaatttggagtatgaaactcaccatgggaatcaaagcacctcgttcgatgatcccaagcaagatgtcaaggagattgagccatgtggcgagcaatacattgattatacaccatgtcatgatcaaatgcgagcaatgacatttcctagagaaaatatgaactatagggagagacattgtcctccagatgaagagaagctgcattgtcttgttccagctccaaaaggatatgtcactcctttttcatggccaaagagtcgtgactatgtaccttttgcaaatgcaccacataagagcttaacagtcgagaaggcagtgcaaaattgggttcaatatgaaggagatgtatttagatttccaggtggtggaacacagttccccaatggggcagatgcatatattgatcaacttgcttctgttataccgatggaaaatggtactgtaagaactgcattggataccggatgtggggttgcaagttggggtgcataccttttcaaaaagaatgttctaaccatgtccttcgcacccagagactcgcatgaagctcaagttcaatttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15718" stop="13881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15418" g_stop="15394" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15393" i_stop="15142" i_length="252">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15141" g_stop="14484" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="684" r_length="659" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14483" i_stop="14275" i_length="209">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14274" g_stop="14181" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="778" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U341288" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15418" e_stop="15394"/>
          <exon e_start="15141" e_stop="14484"/>
          <exon e_start="14274" e_stop="14181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGCTGCTTCTCTGATATCCAGTAAGGTTTCTTTTTTTCATTTAAATTTGGATCACACGAAATGTTTTAGTACATCAGACTACCTTGTGTTTCATGTCTTCCTACTAGTTTTTCAAGATCAATTTGTGTATTATTAATTTTCAAAACCTTGAGTTATATGCTTTTGTTTGATGTGATTATTGTTTTAAGAGGTAAGTAACACATTTATTTCCTTTTGAGTATAGTTGATTGAGAATCATTTTATATGCTTCATCAAAGTCGTTTGAATTCCAGGTTGATCATGGCAA-CAAAAGGAAATCCAGGGGATAACAGAAATAAAAGCTTTTTACCATCATTACTTGTCATAGCTGCACTTTGTTGTTTCTTCTATGTTCTTGGAGTGTGGAAAAGAAGTGGTTTTGGGAAGGGAGACAGCATAGCACTTGAAATAACAAAGAAGGCAGAGGACTGCGGTATCCTTCCTAATTTGGAGTATGAAACTCACCATGGGAATCAAAGCACCTCGTTCGATGATCCCAAGCAAGATGTCAAGGAGATTGAGCCATGTGGCGAGCAATACATTGATTATACACCATGTCATGATCAAATGCGAGCAATGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGATGAAGAGAAGCTGCATTGTCTTGTTCCAGCTCCAAAAGGATATGTCACTCCTTTTTCATGGCCAAAGAGTCGTGACTATGTACCTTTTGCAAATGCACCACATAAGAGCTTAACAGTCGAGAAGGCAGTGCAAAATTGGGTTCAATATGAAGGAGATGTATTTAGATTTCCAGGTGGTGGAACACAGTTCCCCAATGGGGCAGATGCATATATTGATCAACTTGCTTCTGTTATACCGATGGAAAATGGTACTGTAAGAACTGCATTGGATACCGGATGTGGGGTGAGTCAAAGCTTTCTACAATATTCTCCATTGCTCTATCTGTCTAGTGTTTTACTCCTTTTGAATGAAAACCTTACTAGTAGTTGGAGTTCATGACGGTGAATGGTACTTTCTAAAATTTTGAATCAACTCCTTGGTTCTCCAAAGTGGTGTTTGACTGCGTACTAGTTTTAAATTTGAATGTTTGTGTATGATTTGTGATATCATAGGTTGCAAGTTGGGGTGCATACCTTTTCAAGAAGAATGTTCTAACCATGTCCTTCGCACCCAGAGACTCGCATGAAGCTCAAGTTCAATTTGCTT</genome_strand>
        <mrna_strand>AACATTGCTGCTTCTCTGATATCCA............................................................................................................................................................................................................................................................GTTGATCATGGCAACCAAAAGGAAATCCAGGGGATAACAGAAATAAAAGCTTTTTACCATCATTACTTGTCATAGCTGCACTTTGTTGTTTCTTCTATGTTCTTGGAGTGTGGAAAAGAAGTGGTTTTGGGAAGGGAGACAGCATAGCACTTGAAATAACAAAGAAGGCAGAGGACTGCGGTATCCTTCCTAATTTGGAGTATGAAACTCACCATGGGAATCAAAGCACCTCGTTCGATGATCCCAAGCAAGATGTCAAGGAGATTGAGCCATGTGGCGAGCAATACATTGATTATACACCATGTCATGATCAAATGCGAGCAATGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGATGAAGAGAAGCTGCATTGTCTTGTTCCAGCTCCAAAAGGATATGTCACTCCTTTTTCATGGCCAAAGAGTCGTGACTATGTACCTTTTGCAAATGCACCACATAAGAGCTTAACAGTCGAGAAGGCAGTGCAAAATTGGGTTCAATATGAAGGAGATGTATTTAGATTTCCAGGTGGTGGAACACAGTTCCCCAATGGGGCAGATGCATATATTGATCAACTTGCTTCTGTTATACCGATGGAAAATGGTACTGTAAGAACTGCATTGGATACCGGATGTGGG.................................................................................................................................................................................................................GTTGCAAGTTGGGGTGCATACCTTTTCAAAAAGAATGTTCTAACCATGTCCTTCGCACCCAGAGACTCGCATGAAGCTCAAGTTCAATTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31675" stop="26352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31375" g_stop="31285" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31284" i_stop="27369" i_length="3916">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27368" g_stop="26652" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="808" r_length="717" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31375" e_stop="31285"/>
          <exon e_start="27368" e_stop="26652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTGTCGCGCCCCATTTTCGCGGAAAACGGGTTTTGTGCGCGACCTAACAACTCTTTTGGGATTTCGAGTTTTTTGGAGTCGCCACCTAACGAATTAAGGCGCGTTAGGGCACCTATCTAACCTAACTAAGTCTAACTAAAGTCAAAGGGCCAGAGATTAGGGTAAGGGTTCAAATTACCTCGAGGGGAAGGTGTTAGGCATCCCTCGAGGTCCACAAGTGTGGGTCCCGGCCGTATCTCATGCAATCTATGTGGGGGTACAAGTAGCAATCAAGGTCGTTTATTAATTTATTTAATCTTACTAAGTGATAACAAATACGAAACAATTAAGACTATTATTCTTATTTATTTAGATATGTAAAGCTAGGTGATGACAATAAATAAACAATTAAGCTCATTTTATTTATTTTTGACATACGACACTATGTTATAGACAAAATTGGCAAATATTAAGCAATTAGTATGTGCAAAAGTAAAGTTAAAAATTGATAAGTTTATGAATAGGAATTTTTATTTTTTTTTAAAAATGTTTATTTCTTTATAGGGATGATGCCACGATATTATTGATCGTGCTCCTCCACCATAGAAACAATTTTGATTTGAGGTCGGTCTAAAAAATTTATGTTTTTAACAAATGATTTAAAATATTTAGTTCACACGTAGGCACATAAACAATTACATATAAATGCACATAATTCTTTTTGAAGTTCATGGGAAGTGGTACTTCCGGGGACGCATCGGTTTAAAAATTGGAACTAGACCTCATAGTTCCTTTGACTTTCCCACTAACGATAGGTTAGGAGATAGTACTTTATTTTTTTTAAAAATAATGTCACAATCAATCCAAAATTTCAAAGGAAGATTGAATAATGACTTTTAAGAAAATTATGTTGCAAAATTTTATAAGTACTAAAACTAGTAGAACATTAAGATGGTAAATTTATTAAATGCAAAGGTTTTAAGACGAAGCCAAATAATTTGTTAAATGCATGACATGATTTAGCATCATAAAAATTTAAGAAAATAACATATTGCAAAAATCTTCATTTTTATGAGTTTATTTACAAGCCTATAGACATGATTTCTAGGTGTAAAAAGTAACACATATATGCATAATTTTGTAAATGGTATGAACAAATTAAACCTTAGACATGGTTTCTACATGATAAGACAAATGAGAATTTATAATATTTTAACATCTAACAACCTACTAGATTTATTAGGATTTGATTTTAACATTTAAAAATTAATGGACTCTAGTTCTTATTTTTTTAAGGCTTGTTAACAAAACGTCAAGCAAATTGAAAATTGATTAGATTATAACACCTACAAATATCAAATCTAGGTGGTTAAAGACAAACCTATAGGCATGATTTCTAAAAAAAATAATGAGCAAGTACGCATATAAATCCCCCTCCCCTAGACGACCCCCAAATAACTTTATTATATGATCTTAGGGTTACAATTGTTACAACATTCGAATAAATAAAATAGCGGAAAAAATAAAATATATAGACATATATACATTCAAACAAATAAACAAATCCTTCTTCAGTTAATCTTCAACTTGAACTTCAAATATGAAACCTGTTAAACAAAACAAAATGATTCACCTTGTACTCGAACAAAGCAGGAAAATAGCGGAGAAAAGCACTTGAATATTTGCCGAAATATTAATATATTGTTTAAAGTAGCAAGAGAGCAATGAGAGAAGGGAGAGTGATGAGAGAATTTTTGGTTGAAAGTGAATGGGTATATTTTAGAGAATGAGAGGAGGGGGTCCTTTTTATATAACAAAGAGGGGTAACAAATAAGGGGAAAAATGTTTAAAGGAATCAATTAATTATCACATTTTCCTTATTTTAAAGGAGAGCCAAATCAGAAAATTTTAAAATATTTCATTACCAAATATAAACAAGTATATAATAACGAATAGGAAAATAGTAATATTTTCCCTTAAATAAAGAAGAGACAAATCATATTTTTTTTAAAAATATTTCATTACCAAAAATAAATAAGTAAGAAATACAATTAGGAACATTAACATTATTTTCCTTAAATAGTGAAGATCCAAATTAAACTATTTTAAATTATAATTTTCCAGCTATAGGAGTAGTAAGAATCTATATAATATGCAATTAACGGAAGAAGGATCAATTAAGTTATAATAAAAGGGAGGAAATTAACACAATTATTTATTTATTTCTTTTATTAAAAATCCAATGCCAAGTTACTGTTAATCAACATTGCACATGTTTAACTCAAGGGAAATTATTTTAGGGAAGACAATATCACATAACTTAAAGTCAAAGCCAACATACAACTTCATATAATTTTTACCGTATATAGACAACTAATAATCAACCACACTTAATAAAGTAAAGTCAAGTCAGAAATTGCAAACTCATTTAATTTTTATTTTTTTTAAAAAAAACGAATCAAATCTAAGCTAAAGGAATGATCCTTCAAAGAGTGAGTTATCACTCCCAATTAATAGCTGAAACCAGGCACCATCAATCACAATAATATTGGAACCCATAATATGTAATATGTAGGAAAATAGCTAAGTTAACCGTCATTCCAAGTCAAAATGGACAATATTTCAATTACACACCAAGTCTAAAAATCAGAAAATCACAGATTTAAGATCAAGATAACATGCATAAAATTTATTCATTCAGGCAGTCAGACAACCAATTTTGTAGAAGAAGAACAAATCTATTAAAAGGTGAAATGATATTTTAGGAAAAGATTACCCGGACGGATCTGTTGAGATCCGTCATTTCGATCAAAACCCGGTCTATCACCGGAGTTTTTTGGCTGAAGATGCTATGATTTTGTTGTTGTTGCTGTGTTGTTTCGTAGCTATTGCTGCTCCTGGTCCTAGAAAATGAAAGAGGAAAAAAGGAAGGAGAAGAGAGGATAATACTTACCGGAGTTCCGCCATCTCCGTGCAGCTGCTGGCCAGATTCGCTGCTCGAGCGTTGCCATTCGAAGCGGGCTGTGCAGGGCTACTGGTCTTGTTGTCTTTGCCAGCGGGAGCTTCTGCCAACAATGGTGACCCTCGCGATCGGCTGCTGGACGAAGCAAATGTTGCTGCTCACCTAGCGCTGCTATCATTGCTATTGATTGCCTCGCTTGGCACTACTGCTTCTTTGAGAAAAAGAGAAGAAGAGGAGACAGGGAGAGGGAGAAGCACAGAGATGAGAGGAGAACAGCGAGGGGGACGCAGCCTGGCGGAAGAGAGGAGATGGAGAAGATGGAAGTTGCCGGTGGAGTTGGGAGGGGGAGAGAGAGAAAAGCGGTTGATCTGAGGGAGAAGAGAAGAGAAGGAGGGAGAATTATTTTTAGGGATTAGAGTGCTTTGGTGTTGAAGAAAGAGAATGGGAGATTTAATCCCAACCGTCGATTTAGATAGAGATGAAGGGTTAGGATTCGATCTAGGATTTATTAATTAAATAGACGGATGAGATCAAAAGATGATTTCTTGAAATAAGATGAGTTAGATACGGAATGGCTAAAATTGCAATAACATTTGGCTAGAATTGGAATGAAAGAGAGGCTATGATTGTAATAAAACTCTAATTCATGTGGCTAGAATTGGAAGAAATTGGAATAGAATAGGCTAGAATTTAAAATTTAAGGAAAGTGTAGGAATTACTATTTAATTAAAATACTACATATATTAAAATATTTTTTATGTAATTGAAAATCATTTAAATTTTAACATTTGAAATTCATTAATAATTTTAAAATATTTTAATAATATTTACGATAAATTTTATAGAATAAAACATACTAAAATATATGACTTTCAAGCAAAGTCGATTAAAAATTCTAAAATTTAAAATACATATTTAATCGAATAGTATTTCTAAAAAGTTCAAAGGTCGGTCAAAATTGGGTGTCAACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCCTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGCGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315771" ref_strand="+" ref_description="SGN-U315771        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>accacttcccatgaatttcaaaaagaattatgtgcatttatatgtaaatgtttatgtgcctacgtgtgaactaaatcttttaaatcatttttcaaaacataactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgataaataatatcgtggcatcatacctataaagaaacaaacatttttttaaaataaaaattcctattcaaaacttatcaattttcaaactttattttcgcacatattaattgcttaatatttgccaattttgtttataacatagtgtcgtatgtcaaaataaataaaatgagcttaattgtttatttattgccatcacctagctttacatatctaaataaataagaataatagtcttaattgtttcgtatttgttatcacttagtaagattaaataaattaataaacgaccttgattgctacttgtaccctcacatagattgcatgagatatggtcgggacccacacttgtgggcctcgagggatgtctaacaccttcccctcgaggtaatttgaacccttaccctaattctctggctcgttgaccttagttagacatagttaggttagataggtgccttaacgcgccttaatttgttaggtggcgactccaaaactcaaaaatcccagaaaagttgttaggttgtgcacaaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30264" stop="89734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30564" g_stop="31257" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U315771" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30564" e_stop="31257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAAT-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTT-TAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAA-TCTCTGGCCCTTTGACTTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCTAACGCGCCTTAATTCGTTAGGTGGCGACTCCAAAAAACTCGAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCC</genome_strand>
        <mrna_strand>ACCACTTCCCATGAATTTCAAAAAGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACGTGTGAACTAAATCTTTTAAATCATTT-TTCAAAACATAACTATTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATAAATAATATCGTGGCATCATACCTATAAAGAAACAAACATTTTT---TTAAAATAAAAATTCCTATTCA-AAACTTATCAATTTTCAAACTTTATTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTGTTTATAACATAGTGTCGTATGTC-AAAATAAATAAAATGAGCTTAATTGTTTATTTATTGCCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCTCACATAGATTGCATGAGATATGGTCGGGACCCACACTTGTGGGCCTCGAGGGATGTCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACATAGTTAGGTTAGATAGGTGCCTTAACGCGCCTTAATTTGTTAGGTGGCGACTCCAAAACTC-AAAAATCCCAGAAAAGTTGTTAGGTTGTGCACAAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32334" stop="31086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32034" g_stop="31386" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32034" e_stop="31386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAAAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333165" ref_strand="+" ref_description="SGN-U333165        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G74670.1 | Symbol: None | gibberellin-responsive protein, putative, similar to SP:P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} GASA4; contains Pfam profile PF02704: Gibberellin regulated protein | chr1:28056960-28057810 FORWARD | Aliases: F1M20.35, F1M20_35 (evalue: 2e-36, score=149) genbank/nr: gi|16516823|emb|CAD10105.1| Gip1-like protein [Petunia x hybrida](evalue: 3e-39, score=164)">
      <seq>tttacttctatactctcattttcaccaagaaaatcaagcatggccaagattgtttcagttctccttttggcccttcttgtcatttccatgcttgctaacactgttatggctgcaaatggcaaacaccaccactatgctaagaagtatggaccaggaagcttgaagccctcgcaatgtctaccacaatgtacgaggaggtgtagcaagacacagtaccacaagccatgcatgttcttctgccaaaaatgttgcaacaagtgtttgtgtgttccacctggtacctatggaaacaaggctgtttgtccttgttacaataactggaagaccaaggaaggaggacctaaatgcccttaatttactttctgttttcatctaatatgtctacctaatcttcttgttttttctcctattgcacttttatctaacccaagtggttatatatgtaatatgaccatatttccagagtttaaatggaacaaaaatatcactcccactcttgctagaaagtttaatcttcctttggaccaaacaaatttccatctttcctcattaaaaaaaaaaaaaaaaaaaactcgagtttattttttattttgcattgagataagaaaatgttgatcacacaaaattttatcaattactattcttcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44644" stop="59119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44944" g_stop="45081" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45082" i_stop="45171" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45172" g_stop="45205" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="172" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45206" i_stop="45406" i_length="201">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45407" g_stop="45786" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="552" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45787" i_stop="46300" i_length="514">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46301" g_stop="46399" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="651" r_length="99" r_score="0.495"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U333165" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44944" e_stop="45081"/>
          <exon e_start="45172" e_stop="45205"/>
          <exon e_start="45407" e_stop="45786"/>
          <exon e_start="46301" e_stop="46399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTCTATACTCTCATTTTCACCAAGAAAATCAAGCATGGCCAAGATTGTTTCAGTTCTCCTTTTGGCCCTTCTTGTCATTTCCATGCTTGCTAACACTGTTATGGCTGCAAATGGCAAACACCACCACTATGCTGTAAGTTTACTTTTTTTCAATTATTGAATTTTCGTACTTTCTGTAACCATTTGGATTTATCCGTCTAATATATCTTTATTGTTATTTCAGAAGAAGTATGGACCAGGAAGCTTGAAGCCCTCGCGTAAGTATTTCTCATGTGAAAAAATAACTGAACATTTTGAAGTATGAGAATAAAAAAATCTTAAGTTTATAAGCGACAGAGAAATGTACTACATAGCTATAAATATTGGATTGTTAATTTATAAACTTTAAATCTTGAAACTATCAGTATTGTTTATGAGAGGTTTTAAGTGTTGATTGTTTTTTTTTTGTATTTTACCAGAATGTCTACCACAATGTACGAGGAGGTGTAGCAAGACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAATGTTGCAACAAGTGTTTGTGTGTTCCACCTGGTACCTATGGAAACAAGGCTGTTTGTCCTTGTTACAATAACTGGAAGACCAAGGAAGGAGGACCTAAATGCCCTTAATTTACTTTCTGTTTTCATCTAATATGTCTACCTAATCTTCTTGTTTTTTCTCCTATTGCACTTTTATCTAACCCAAGTGGTTATATATGTAATATGACCATATTTCCAGAGTTTAAATGGAACAAAAATATCACTCCCACTCTTGCTAGAAAGTTTAATCTTCCTTTGGACCAAACAAATTTCCATCTTTCCTCATTAATCTTTGTTATATGTTCAGATACTCTCCTCACTGCACTTTTGTCATATGTTATCAAACTCTCGATAACTACATCGTTTGGCCAGATATGTTTTGGTAGCAATAGCAAACACTGCTATGGAGAACATATAGTATGACATAACATGAAAATAGGTTGCAAAAAGACTAGGGGGCAGTTGTTTCCTCTGCTAAAATCATAGTGACAGAACACAAAGTTGTTATCTCTTCTGGAGGAATACAGTAGTGCAAACATTACGCAAAAAATGGAAGCAAAAGGCATGGCAAAACTAAGAATAAATGAGATTAATGACAGTAAGCGACTAATGTGATGTGAAGATATGGTATCTACACAATTGAAGCAACGACTTTATCAAGTCGTAACCAACTCTGGAGGCTAAGATTTCCACGCCACCTAGTGGCTGCAATGTTTTGATATGTACAACAGTACAAACATAACAAAATATGAAATTTAAAGCTTTTGCGTCTCCCAATGTAAAGATACAGTAGGTAAATGATAAAAACAAAACGAGAAAAAATCTTTTCCCATTATGTAGCTTACCATCTG-TACAATTAGCTTATCGAAACAGAGAGCTGTTTATACTGATTGTACATGAG</genome_strand>
        <mrna_strand>TTTACTTCTATACTCTCATTTTCACCAAGAAAATCAAGCATGGCCAAGATTGTTTCAGTTCTCCTTTTGGCCCTTCTTGTCATTTCCATGCTTGCTAACACTGTTATGGCTGCAAATGGCAAACACCACCACTATGCT..........................................................................................AAGAAGTATGGACCAGGAAGCTTGAAGCCCTCGC.........................................................................................................................................................................................................AATGTCTACCACAATGTACGAGGAGGTGTAGCAAGACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAATGTTGCAACAAGTGTTTGTGTGTTCCACCTGGTACCTATGGAAACAAGGCTGTTTGTCCTTGTTACAATAACTGGAAGACCAAGGAAGGAGGACCTAAATGCCCTTAATTTACTTTCTGTTTTCATCTAATATGTCTACCTAATCTTCTTGTTTTTTCTCCTATTGCACTTTTATCTAACCCAAGTGGTTATATATGTAATATGACCATATTTCCAGAGTTTAAATGGAACAAAAATATCACTCCCACTCTTGCTAGAAAGTTTAATCTTCCTTTGGACCAAACAAATTTCCATCTTTCCTCATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACTCGAGT-TTATTTTTTATTTTGCATTGAGATAAGAAAATGTTGATCACACAAAATTTTATCAATTACTATTCTTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322643" ref_strand="+" ref_description="SGN-U322643        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr3:17534443-17536888 FORWARD | Aliases: None(evalue: 5e-55, score=212) genbank/nr: gi|30692888|ref|NP_850668.1| expressed protein [Arabidopsis thaliana](evalue: 4e-53, score=212)">
      <seq>ggaaaaatgttgctgcgacttttcttgtctgaaaaagagtagtatatattcattagcttctaagctggttcttcacaaagctaacccatcaagaattgcatattcaggataatttggtgaactgttaatggaagaacatttggttttgcgtgttgaccatcttatcacacccgaatcattgcactctctgccacggcccgagcatacagaattatctgggggcacatctgtcactcagacagttggtacatcctcaggtattgatgctcaagagaacgaatatcaaagagctggagatgaagaagagccattacttcagactgtggaatgtcggatttgtcaggaagaagatagcttgaaaaatttggagattccttgtggttgcagtggcagcttgaagtatgcacacagaaaatgtgttcaacaatggtgtgatgagaagggagatataacttgcgagatttgccatcagctttatcatcctggctatactgctcggcccgcgtctcctcaatctgaagatacatccattgacatcagaggttggacagtgggtggcactcaggtcgactttcatgatcctcgacttcttgcaatggctgctgctgaacgccgtcttctagaggctgactatgacgaatattcagattcaaatgctagtggagctgcattttttcggtctgccgctttgattctattggcccttctgttactgaggcatgctctgatagttggagatgctaatgaggatgaggatgatgtttccaccttttttatgcttttcctgctccgcgctgccggttttcttttaccttgttacattatagcttgggctatcggtatattgcagcgtcgcaggcaaagacagcaggaggcagcagcaatagcagcagccgaagttgctttccttgcgcaggcagggcagcataggggtttgcatgtcacaattgcacctggacctgcaccggcagcagaaccttcgacaacaccagcaactcctcaggtgtcaatgccaccggaacaggcagcaactactcatgtacaatcagtataaacagctctctgtttcgataagctaattgtacagatggtaagctacataatgggaaaagattttttctcgttttgtttttatcatttacctactgtatctttacattgggagacgcaaaagctttaaatttcatattttgttatgtttgtactgttgtacatatcaaaacattgcagccactaggtggcgtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnccccggggggggggcccggacccctttccccccttaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51084" stop="45885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50784" g_stop="50678" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50677" i_stop="49811" i_length="867">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.005" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49810" g_stop="49518" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="400" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49517" i_stop="49118" i_length="400">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49117" g_stop="49046" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49045" i_stop="48584" i_length="462">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48583" g_stop="48516" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="540" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48515" i_stop="48160" i_length="356">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48159" g_stop="48006" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="694" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48005" i_stop="47135" i_length="871">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47134" g_stop="47051" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="778" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47050" i_stop="46940" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.157" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46939" g_stop="46850" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="868" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46849" i_stop="46566" i_length="284">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46565" g_stop="46186" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="1248" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U322643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1248</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50784" e_stop="50678"/>
          <exon e_start="49810" e_stop="49518"/>
          <exon e_start="49117" e_stop="49046"/>
          <exon e_start="48583" e_stop="48516"/>
          <exon e_start="48159" e_stop="48006"/>
          <exon e_start="47134" e_stop="47051"/>
          <exon e_start="46939" e_stop="46850"/>
          <exon e_start="46565" e_stop="46186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGTTGCTGCGACTTTTCTTGTCTGAAAAAGAGTAGTATATATTCATTAGCTTCTAAGCTGGTTCTTCACAAAGCTAACCCATCAAGAATTGCATATTCAGGTATCTTTTCAACTGTTGTTTATCCTAATTTTGCTGTTTTTTGTTTGGGTTTATGATTTTCCAATTAGCTGAGTTGATTTAGTCCAGTAACCTCAAATTCAAACCATTAATCTACATTTTAATCTAAGTTCCTAGTTCAAGATTGGAACTTTTTGCTTTGGGTGGAAGATTTCTATAAATGGGTGAGCTAATTAATCGATGGATTCTGACTTGTTATGTAATTTTTGCGATTTATTGAAACTGAAGGTAAACGATGTTTTTCATCCTTTTTATGCACAAAGCTTGAATCTTTTAACCGTGAAATGTATGGTCTTGATTTTGTCAAGATTGTTGACTGTTAGAAAAAGAAGAGAGGAAATGGGACGGAAAGGAACTCATAAGGTTGTTTCATTTGCTTCAGAGTTTGGGTTGAATTTTCGAACTTATGTTATTGGTCAAATGGGTTAATTTGATGTTAGGTTTCAAATTCAAATTTTCTGTTCAAGAATGCTGTTCTTTAGTAGTGAAAAAAATGTATGCTTCCGAATTTAAACTAGGGGATTCAGTTTCCTTGAATGTTTAATGTGGCATTCTGGACTTTTGAATCTAAACGAGAACAGCATAAACCTTGTTAATACGAAATTAAAAGGCAAGTACATCTTATGCTTTTCAAATCCCTTTCTCTTGATGGCAACATAGGTTGCTAACTTTGGACAAAGCTATACAAAGGTAAAGCAAAACTATGCAACACTAAAGTATACCGAATTATCTCTAGTAGTCTGTTAAAATGTAATGGTTGGAGAATCTTTGTTTGCTTAGTGAAGTGTCCGAAGTTCCCCTCTTATATTTTTGTCATATGAGATGGCTGACGTTGTTTAAGGATCTTAGGATAATTTGGTGAACTGTTAATGGAAGAACATTTGGTTTTGCGTGTTGACCATCTTATCACACCCGAATCATTGCACTCTCTGCCACGGCCCGAGCATACAGAATTATCTGGGGGCACATCTGTCACTCAGACAGTTGGTACATCCTCAGGTATTGATGCTCAAGAGAACGAATATCAAAGAGCTGGAGATGAAGAAGAGCCATTACTTCAGACTGTGGAATGTCGGATTTGTCAGGAAGAAGATAGCTTGAAAAATTTGGAGATTCCTTGTGGTTGCAGTGGCAGCTTGAAGGTATCTTTGTGAAGTTGTTGAATTTTAGTTCTCTTCTTGTTCAATAAGTTGCTTATGCTTTTATAATTATGCCAATCACGTTTTTTACAGCTAAAGCCTAAAATTTGCTAATCCCTGATACATTTTCTCTCAAGAACTTAAGATTTAAATGATTCAACATTTTACAGAAGCTTGATATTTGAGTTTTCTATCCTTTTCAACGAAGTTGATAAATTCTAGTCTACTTCACTGTCACAATAATCCAACAATTATTTTGTGTACTTCACTGTCACAAAATTGAGCTTATTTATCTCTGTGTTACAATGTCCAACAATTACTTTTTGTACCTATGTATGAGCTTTTATTGGTATGCTGACTATTCTTTTTTATTTGTCATCAACTTCACTGTCACAAAATCCAGTATGCACACAGAAAATGTGTTCAACAATGGTGTGATGAGAAGGGAGATATAACTTGCGAGATTTGCCATCAGGTACTCCTGTGTGTGTTCTGTTTACATTGTTTTATTGTGTATGATTGATTAAACTTTTGCCTCTCCCCATACCAAAACCAGTGTAAGACAATTCAGCCATAAAAGAGTGAGGGTAGGTGTCTAGGTGAGATAACATAATTGACTCTGCACCAGACTACCAGCTGAGAGTGTAGACAATCATATTTCCTTTATGTGCTTGCTCTGTCCTCCAATACTCTTTCCTGATGGTAGGGAGTGTCACTTATCCCTATGCAGCAATTCAGCTGTTTATTTATTTTTTTACTTCAGAAATACAGGACATTGATTCAACCAATAAAAATTTAAGGCCATTGATACTTAAGAATCACAAATTTGGAATGCCAGTGATGCTTGCTGAAAGAGTTTTAGTTCAGCTACATGCGGAAATATTTCTATCTAGCTGGCACTTACCAAGCTTAAATTTTTTTTGTGTCTAACGTGCAGCTTTATCATCCTGGCTATACTGCTCGGCCCGCGTCTCCTCAATCTGAAGATACATCCATTGACATCAGGTATGTTCGGGTAGCTTAGTTTTCGCCAATATACACCGGTGATGCATAATTTGTCCTTGTTACTAAAAATTTGTAACATAATCTGATGGAACCAAACTTTGGAGCCAGTTTTTGTCATTAGTAACTTTGCCTGTGGTAAGTGATTGTTCTGGCTATTTTCCCCTTAACTTCTTTCTTTTCTCTTTTTTAAAGAGTGCTTTGTAGTTTTTTTCAATAAAATCCAGACAGTTTTGCTATGCTTCTGGGGTCATGTAGCACTCGATACTTTAACAGCACATCCTCTTGTAATCTTTATATGCTGAAAGATTTCTCTCTCTTATCTGTAAATGATGAATTCAACCATGTGGCTTATGTAGAGGTTGGACAGTGGGTGGCACTCAGGTCGACTTTCATGATCCTCGACTTCTTGCAATGGCTGCTGCTGAACGCCGTCTTCTAGAGGCTGACTATGACGAATATTCAGATTCAAATGCTAGTGGAGCTGCATTTTTTCGGTCTGCCGCTTTGATTGTAAGCAACTGAATTATTGTGTAGTTGATTCATTTTGTTCTATTGCAGTGCAAACTTCTTTTGTTTAGTAGTGCCTAGGGTGATGTTGGGCATGCATTAGAATTGTTCGTCTAGCTGGTATGTACATGAACGGATTAAAAGTCTCTTGAGAGAGAGGAGTGTGGGAGTGACATTGGTAGTGTGATAAATGAATTTTCACATTAAGCTTTGAGCTGGTAGAGTGCAATTTTATTTTATCCAGTTTGCATTTTTGGTCCAATTCCATCTTTAGAGAAAATACAACGGGGATTTTCATCTAATTGGAGGCATATTTCAGTAATGATACTTAAGAGAACATTATTTATATTTAAAAAGATAGATATTAACTCATCAAAACCCTTTGTATAGATGACAAACAAGCTTCTACACTCGTCATTACTTATACCCTCATGCTTGTGAAGGTTGTGGGTTAAAGCACCGACAGGACCATATTTCTGGTTATACTTGGATAAATAAATAAAACAGATTTTCCAGTAAGTCCTTGAAATGGCAATCTGTATTAGTAAATGATATTATGTCATTGCAATGGTCTCTTGGTAGAATGCATGCATTTCTTCTCTTTCCTCTTATTACCCTGTCTTGTTTCTTATGCTATTTTTCTTCTGGTTGTCCAACGGGATCAGAAATGAGATTCAATCTCTTTCCTAAGTATTTAAAGATTTCTGCAGTACACATGACATGTATCCTACATGTTTATGGATGTTAAACTTGAAGAAGACTAGGGGAGAATCTCTTAGATGTGCCAAAAAAGTAGATCTTGGTGACAAATTTATTTTCTATCTTCTCACTTTGTTTGCTCACCATGTTAAATTAGCACTCTGTTTTCCTGCAGCTATTGGCCCTTCTGTTACTGAGGCATGCTCTGATAGTTGGAGATGCTAATGAGGATGAGGATGATGTTTCCACCTTTTTTATGGTAAGTAATACAGTGATTTTTAAGTCTACTTGTTACTTTCTATGATAAGTTTATGACACATCCACTCTAGATAGTGTGTGGGACTAATGATGTAGTTGATTCTTGACACAGCTTTTCCTGCTCCGCGCTGCCGGTTTTCTTTTACCTTGTTACATTATAGCTTGGGCTATCGGTATATTGCAGCGTCGCAGGCAAAGACAGGTTTGTCAACTTTTTCTCTTCTTTTTATAACTTCCAGAACTGTATTAGCATTTGTCTTCATTCTTGCACATCTTAGTGATGCTTTCTGCTCATGCCCAATGTGTGACTCTTATGGTACAAATCAGATTATTAAGTGACTTGTGTAAATCATAAACTTATCAATTCACTTATTTTCATTGCCTATTAAGTGAGTTGACTGTGTTAATTATAAACTTCATTTAGTATGTCAGTTTGTAAATGTCGAATATATGCTTATATTTTTTTCTCATTTCACATCTATAAAGCAGGAGGCAGCAGCAATAGCAGCAGCCGAAGTTGCTTTCCTTGCGCAGGCAGGGCAGCATAGGGGTTTGCATGTCACAATTGCACCTGGACCTGCACCGGCAGCAGAACCTTCGACAACACCAGCAACTCCTCAGGTGTCAATGCCACCGGAACAGGCAGCAACTACTCATGTACAATCAGTATAAACAGCTCTCTGTTTCGATAAGCTAATTGTACAGATGGTAAGCTACATAATGGGAAAAGATTTTTTCTCGTTTTGTTTTTATCATTTACCTACTGTATCTTTACATTGGGAGACGCAAAAGCTTTAAATTTCATATTTTGTTATGTTTGTACTGTTGTACATATCAAAACATTGCAGCCACTAGGTGGCGTGGAA</genome_strand>
        <mrna_strand>GGAAAAATGTTGCTGCGACTTTTCTTGTCTGAAAAAGAGTAGTATATATTCATTAGCTTCTAAGCTGGTTCTTCACAAAGCTAACCCATCAAGAATTGCATATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTTGGTGAACTGTTAATGGAAGAACATTTGGTTTTGCGTGTTGACCATCTTATCACACCCGAATCATTGCACTCTCTGCCACGGCCCGAGCATACAGAATTATCTGGGGGCACATCTGTCACTCAGACAGTTGGTACATCCTCAGGTATTGATGCTCAAGAGAACGAATATCAAAGAGCTGGAGATGAAGAAGAGCCATTACTTCAGACTGTGGAATGTCGGATTTGTCAGGAAGAAGATAGCTTGAAAAATTTGGAGATTCCTTGTGGTTGCAGTGGCAGCTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................TATGCACACAGAAAATGTGTTCAACAATGGTGTGATGAGAAGGGAGATATAACTTGCGAGATTTGCCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCATCCTGGCTATACTGCTCGGCCCGCGTCTCCTCAATCTGAAGATACATCCATTGACATCAG....................................................................................................................................................................................................................................................................................................................................................................AGGTTGGACAGTGGGTGGCACTCAGGTCGACTTTCATGATCCTCGACTTCTTGCAATGGCTGCTGCTGAACGCCGTCTTCTAGAGGCTGACTATGACGAATATTCAGATTCAAATGCTAGTGGAGCTGCATTTTTTCGGTCTGCCGCTTTGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGGCCCTTCTGTTACTGAGGCATGCTCTGATAGTTGGAGATGCTAATGAGGATGAGGATGATGTTTCCACCTTTTTTATG...............................................................................................................CTTTTCCTGCTCCGCGCTGCCGGTTTTCTTTTACCTTGTTACATTATAGCTTGGGCTATCGGTATATTGCAGCGTCGCAGGCAAAGACAG............................................................................................................................................................................................................................................................................................CAGGAGGCAGCAGCAATAGCAGCAGCCGAAGTTGCTTTCCTTGCGCAGGCAGGGCAGCATAGGGGTTTGCATGTCACAATTGCACCTGGACCTGCACCGGCAGCAGAACCTTCGACAACACCAGCAACTCCTCAGGTGTCAATGCCACCGGAACAGGCAGCAACTACTCATGTACAATCAGTATAAACAGCTCTCTGTTTCGATAAGCTAATTGTACAGATGGTAAGCTACATAATGGGAAAAGATTTTTTCTCGTTTTGTTTTTATCATTTACCTACTGTATCTTTACATTGGGAGACGCAAAAGCTTTAAATTTCATATTTTGTTATGTTTGTACTGTTGTACATATCAAAACATTGCAGCCACTAGGTGGCGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320855" ref_strand="+" ref_description="SGN-U320855        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:25089709-25091215 REVERSE | Aliases: K19B1.5, K19B1_5, AT5G62450(evalue: 2e-42, score=170) genbank/nr: gi|30697677|ref|NP_201050.2| expressed protein [Arabidopsis thaliana] gi|20385491|gb|AAM21312.1| EMB514 [Arabidopsis thaliana] gi|21593438|gb|AAM65405.1| unknown [Arabidopsis thaliana] gi|30793885|gb|AAP40395.1| unknown protein [Arabidopsis thaliana] gi|30794104|gb|AAP40494.1| unknown protein [Arabidopsis thaliana](evalue: 1e-40, score=170)">
      <seq>aatcggccgaattgactctcagtgagggtttaaacttacatcaaaaccctagcgttccttttaccccaattctaaccgctttacttgctccctgaacttacgcagcatagccatggcagaaactgaacctgaagtcgccgccgccgtgcccgccgttgaagccgtggtagaggccgagaaagaggacacttcggctcaggacatggatgtcgaagctcaagccgccgatgatacggaagagaacggcgggtcgaagcgtccaagggaggaggaaaacgaggtggagaaggaagacgccacaaagaagctgaaggtcgataagtctgtggaagaagaacgattcgagaatttagatggaagcaaaacggtggatgaagaaaagaaagatgtgtcaggtccgattagcgtgggccctaagaacttcggatcgtctgtggaggtgttcaattacttttataagcttctccattcttggtctcccaacctcaacctcaacaagtatgagtacattgttttgcttgacttgctaaagaagggtcatttagagccagatagaaagattggtacaggagtccgtgcattccaaatccggtttcatcctcaatataaaagtcgttgcttctttatcattagggaggatgactctgtggatgattttagcttcaggaaatgtattgatcacattagtcctctcccagagaacatgcaagtaaaacacgaggcaaacagagacttggcacgtggtggaaaaggaggtgggcgtggccgtggaagaggagggaagccaagatactgaaggcagctgcatgttctgtcaattgttatgtaagccgtcacatgctgctgcctgcttagtccacattttgttcaatacccctttcaatcctgcagtttatgacataatatgcgttatgactacaaggatggcatctgctggttatgatgttaccgtaatatgcgttaaatttatgtaatgtatgaatacatcagacgaaattatcatatgaagaacgtattattcaattttagcatatactgtaggtggtgttaactaaacatattgctctgatgcattgtaggctccctcccaattgtgttccaatgatatgccgtttatgtttttttgaaaggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53287" stop="59110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53589" g_stop="54071" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="499" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54072" i_stop="55292" i_length="1221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55293" g_stop="55944" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="1151" r_length="652" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U320855" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1135</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53589" e_stop="54071"/>
          <exon e_start="55293" e_stop="55944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTGAGGGTTTAAACTTACATCAAAACCCTAGCGTTCCTTTTACCCCAATTCTAACCGCTTTACTTGCTCCCTGAACTTACGCAGCATAGCCATGGCAGAAACTGAACCTGAAGTCGCCGCCGCCGTGCCCGCCGTTGAAGCCGTGGTAGAGGCCGAGAAAGAGGACACTTCGGCTCAGGACATGGATGTCGAAGCTCAAGCCGCCGATGATACGGAAGAGAACGGCGGGTCGAAGCGTCCAAGGGAGGAGGAAAACGAGGTGGAGAAGGAAGACGCCACAAAGAAGCTGAAGGTCGATAAGTCTGTGGAAGAAGAACGATTCGAGAATTTAGATGGAAGCAAAACGGTGGATGAAGAAAAGAAAGATGTGTCAGGTCCGATTAGCGTGGGCCCTAAGAACTTCGGATCGTCTGTGGAGGTGTTCAATTACTTTTATAAGCTTCTCCATTCTTGGTCTCCCAACCTCAACCTCAACAAGGTAAGCTGTTTCATGTATTTTCTTCAATATTGCAGTAAAACAGTTGTAAGTATAGCGAAATGGATAACTAACCTTGATGTGAAATGCTCTGAATGTCATTGTACTATTGTGCTAACATAGGAGCGAAATGGATATAGATAATTCATATAGCTAACACTGACCCCCTTAATTTGGTATTAAGGCTTAGTTGTTTGAGTGTAGCATATTGATAAAAATTTATTTGTGGAGGATTGACTCTGCATCATTCCATATACCAATATAATGATCTTTGTAGTGGTTAAGGTCTCTGGTTTTAGTTTTTCATGGGTAGGATGCTAATGTGGGATTTTTCGCGAGCAATTTCGGATGCCTTACCTGGAATAGTCTGAAAGTGTGTAGCTTTAAGGCATTAAGCTGTATTATATGTTTATATCAGTGAGCCAGTGCACTATGCTGTTTTGTTCCTTTGTGTGGCTTTGTATTACGATTGGGCTAGGTTTATTTGAGAGCCATAAGTTATCTCCAGCCTGCCAAAAGTTGTTTCCTGTCTAGAGCATCCGGCATTTTAGATGGATGGGATGACAGATTTCTATTCTCTGCGTGTACACGACGATGAATATTGACTCAAGCCAAGCAACCAGTCTCTGGTATGATATGATAGTAATTGTGAGATTGCAACATTCTACTATTTTGGCCCATATATTTATTTGGTTTTAGCAAATAGTATCAAAATTCATAAGGCGAAGTTACAGAATACCTAACTTCTTGCTGAATAAATGGTCCAGAACTGGATAATTGCAGTTCAACAAGTACAACCACATGGACCACACCTTCCATTTCTTTCCATCCTTGGTTAATTGGAAGTAAAATGCATTTAGAAAACAATGGGTTGTATTATGTGCGCGAATTGGATTGTACATTTGTTGTGTGACCTCCTTGATCAAGTGCCCGCTTGGATTAGCTTATTTTTAGGTGTTTCTTTTTTGGCTTTTAAGCACTTTTAAGGTGTTTGGAAAGGTTAAGAAATGTTTTTAAGCACTCACTATTATATTAGCCCAAAAGAGGTGTAGTATAATTAGCCAAAAGCCATAAGTAGGGTATCCTCTACATATGGCTTTATTTTTGCCCATTGCTTGTAAAAAGAAGTTGTGTTCGAATGCGCTTTGGTTGGTTAGATATTCATGTCTGTATCACATGAAATTTTATCCGTGCTTTCTGATTCCTTTTCTTTCTATATTGCAGTATGAGTACATTGTTTTGCTTGACTTGCTAAAGAAGGGTCATTTAGAGCCAGATAGAAAGATTGGTACAGGAGTCCGTGCATTCCAAATCCGGTTTCATCCTCAATATAAAAGTCGTTGCTTCTTTATCATTAGGGAGGATGACTCTGTGGATGATTTTAGCTTCAGGAAATGTATTGATCACATTAGTCCTCTCCCAGAGAACATGCAAGTAAAACACGAGGCAAACAGAGACTTGGCACGTGGTGGAAAAGGAGGTGGGCGTGGCCGTGGAAGAGGAGGGAAGCCAAGATACTGAAGGCAGCTGCATGTTCTGTCAATTGTTATGTAAGCCGTCACATGCTGCTGCCTGCTTAGTCCACATTTTGTTCAATACCCCTTTCAATCCTGCAGTTTATGACATAATATGCGTTATGACTACAAGGATGGCATCTGCTGGTTATGATGTTACCGTAATATGCGTTAAATTTATGTAATGTATGAATACATCAGACGAAATTATCATATGAAGAACGTATTATTCAATTTTAGCATATACTGTAGGTGGTGTTAACTAAACATATTGCTCTGATGCATTGTAGGCTCCCTCCCAATTGTGTTCCAATGATATGCCGTTTATGTTTTTTTGAAAGGAAAAAATTATCCTTTTAGCT</genome_strand>
        <mrna_strand>TCTCAGTGAGGGTTTAAACTTACATCAAAACCCTAGCGTTCCTTTTACCCCAATTCTAACCGCTTTACTTGCTCCCTGAACTTACGCAGCATAGCCATGGCAGAAACTGAACCTGAAGTCGCCGCCGCCGTGCCCGCCGTTGAAGCCGTGGTAGAGGCCGAGAAAGAGGACACTTCGGCTCAGGACATGGATGTCGAAGCTCAAGCCGCCGATGATACGGAAGAGAACGGCGGGTCGAAGCGTCCAAGGGAGGAGGAAAACGAGGTGGAGAAGGAAGACGCCACAAAGAAGCTGAAGGTCGATAAGTCTGTGGAAGAAGAACGATTCGAGAATTTAGATGGAAGCAAAACGGTGGATGAAGAAAAGAAAGATGTGTCAGGTCCGATTAGCGTGGGCCCTAAGAACTTCGGATCGTCTGTGGAGGTGTTCAATTACTTTTATAAGCTTCTCCATTCTTGGTCTCCCAACCTCAACCTCAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGTACATTGTTTTGCTTGACTTGCTAAAGAAGGGTCATTTAGAGCCAGATAGAAAGATTGGTACAGGAGTCCGTGCATTCCAAATCCGGTTTCATCCTCAATATAAAAGTCGTTGCTTCTTTATCATTAGGGAGGATGACTCTGTGGATGATTTTAGCTTCAGGAAATGTATTGATCACATTAGTCCTCTCCCAGAGAACATGCAAGTAAAACACGAGGCAAACAGAGACTTGGCACGTGGTGGAAAAGGAGGTGGGCGTGGCCGTGGAAGAGGAGGGAAGCCAAGATACTGAAGGCAGCTGCATGTTCTGTCAATTGTTATGTAAGCCGTCACATGCTGCTGCCTGCTTAGTCCACATTTTGTTCAATACCCCTTTCAATCCTGCAGTTTATGACATAATATGCGTTATGACTACAAGGATGGCATCTGCTGGTTATGATGTTACCGTAATATGCGTTAAATTTATGTAATGTATGAATACATCAGACGAAATTATCATATGAAGAACGTATTATTCAATTTTAGCATATACTGTAGGTGGTGTTAACTAAACATATTGCTCTGATGCATTGTAGGCTCCCTCCCAATTGTGTTCCAATGATATGCCGTTTATGTTTTTTTGAAAGGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320037" ref_strand="+" ref_description="SGN-U320037        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: CDF3 | Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. | chr3:17514985-17517042 REVERSE | Aliases: F1P2.50, F1P2_50, CYCLING DOF FACTOR 3, CDF3(evalue: 2e-68, score=257) genbank/nr: gi|1669341|dbj|BAA08094.1| AOBP (ascorbate oxidase promoter-binding protein) [Cucurbita maxima] (evalue: 2e-90, score=337)">
      <seq>aatcggccgaattgagaacgccaacagggctttgcttctaaaaccgtatctctcgtagaaaaaaaaatccacttttgaaacgtcgtcaactcgccggcggcgacttcgtcggatactaaacgagaatccccagaataatagagtgtttctacagtttcccttttcgtttttttgaatacccttttcgttttagtctggaaaatgacttgtgattcaaagatcaagctgtttggcaagatactcccggtggtcgtctccggcgttggtaggggtttgtctggtagtgatggtgttatatatgatggaaatagaaatgggtctgatcttgatcgatgtttagagggaagtaaagcaagcagtgtagagaaggatgaaggaagtgagtatgaaaagcaagaagctgaaaaggataatataactggagagctcagtgaagctaaatctgaggagggagaccaaaatcagatgatagaagaatcagaaaatcctaagactccatcagaatcagagagcagtcctaaatcttcaactgaggaagaccctcaagcagtaaaatcatccaagactgagaatgaaccgactaatgtgacaaattccgagcagaacaatctgaagaagccagacaaaatcctcccatgccctcgttgcaatagtttggatacaaaattctgttactataataacaacaatgtcaaccagcctcgtcatttctgcaggagctgccagaggtattggactgccggtggtaccatgaggaatctccctgtgggagctggtcgtcgcaagaacaagaatcttgcatctcaatatcgtaatataagtatccctgaaggattactagcagcaggaattgaatctccaaatgggttaattcatcatccattattcaaaccaaatggcactattctatcgtttggtcccgacttacccctgtgtgaacctatggcttctgcattaaatcaagcagagaaaagggtatcaactggtattcaaaacggttctcataaatcagaagtcaagaattcttcttgcaaaggtggagattctggggatgagtgctgtagagggattaacatcccgactccaaatatgatggtggaagaaggtaaaggagagccccacaaggctgttatgcatagtataaatggcatcccgtctcctgttccgtgcctccatggagtaccttggccttttccatggaatgctgcagttcctgtgtcggctatttgccccattcccttccctatgccattcttccctacaccttattggaattgcagtgtgcctccttggagtaatccttggttgagtccacctctgcgagctgcaaacgagaaaacatcaggttctgatcctacttcttctttagggaaacattcaagagagggggatttgcttaagccaagcaatcctgggggcaaagaacaatcagaacaaaagtattcagaggggtctattttggtcccaaaaacattgcggattgatgatcctgatgaagctgctaagagttctatatggtcaacacttgggattaaatatgattctactaacaggggagagtttttcaaggccttgcaaccaaaaagcaatgacaagcacaacaaagccaatacatttccagtattgcatactaaccctgcagccttatctagatctatcaccttccaacaaggtgcctaaagatgatcctatgaatctgcgaaggatggtcttcacttgaaattaagtatgactgttgtctgatgagggctttttggggcctagcaaccaaaaagtaacaaagctaagataatgcttttttctcccattgaactccagcgggaaacttcatggatttcctgcctgatggggacatttacagtgcgcagatcacttacagagctgccaggctaatatctctcaagtgatccaatgaaactggggaatgacatgggaagctattgtagaaacctattgtttatagttttcttggtaacaataagagcaagtggctggcttggtttttacttttgtgtgttttctaatgtacatacctttttacagctaacactagagtgaggaagacagttgtttagatcctcatccaacagttgttgtaacatattttaaattaatgtcaaagttagtttggagagccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59957" stop="63293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60262" g_stop="60652" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="408" r_length="392" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60653" i_stop="61263" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61264" g_stop="62993" g_length="1730"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="2138" r_length="1730" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2139" polyA_stop="2155"/>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U320037" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2121</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60262" e_stop="60652"/>
          <exon e_start="61264" e_stop="62993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCAACAGGG-TTTGCTTCTAAAACCGTATCTCTCGTAGAAAAAAAAATCCACTTTTGAAACGTCGTCAACTCGCCGGCGGCGACTTCGTCGGATACTAAACGAGAATCCCCAGAATAATAGAGTGTTTCTACAGTTTCCCTTTTCGTTTTTTTGAATACCCTTTTCGTTTTAGTCTGGAAAATGACTTGTGATTCAGAGATCAAGCTGTTTGGCAAGATACTCCCGGTGGTCGTCTCCGGCGTTGGTAGGGGTTTGTCTGGTAGTGATGGTGTTATATATGATGGAAATAGAAATGGGTCTGATCTTGATCGATGTTTAGAGGGAAGTAAAGCAAGCAGTGTAGAGAAGGATGAAGGAAGTGAGTATGAAAAGCAAGAAGCTGAAAAGGTACTTCTTTATGTAATTTCTATGGAATTAAAGTGAGAGCCAAATGATTTAATCGTTTAATTTTAATGGGTTTAGTAATTTGGTTCTAATTACTTAGATTTAACAGATGAAATGATTCAATTTTCCTGTTGTCTAATTGGTGATTTTGCTGCTTCTTTTTGCTTATTGTTGATGAATTTTTAATGTGTTTCTATGTGAAGTAGTTTAATTGAGAAACCCCACCAACCATATTAACCATATGAAGTTTCTAGATCTGGTACTGCTTAATGTTCTTTTGGTGCCCTCTTCTTTTTAGGGATTATTGATTAATTTGAGGATTCAAAGCACCAAAATTGATATTTCAGCATCATAAAAGTTATGCATTTAATGTTTCCTTTACCATATAATTTGTAGCCAAAACATTGGAAAAAGAATGTGCTTTTGTCTACTTTTTCATGTATATCACAGTTGAAGAGGGATTCTCGATCTGTAATAAAGTTTCGAACTTGTCAGTTTACTGTCTGTGATTGGTTCTTGCTATTTTGCTGATTGGATTTAGCTCACACAGTTTACTGTTGATATTTAATTGCAATTTCATAAGCAGCTTATGCAGTTCTGTGTTTTGATTGTAGGATAATATAACTGGAGAGCTCAGTGAAGCTAAATCTGAGGAGGGAGACCAAAATCAGATGATAGAAGAATCAGAAAATCCTAAGACTCCATCAGAATCAGAGAGCAGTCCTAAATCTTCAACTGAGGAAGACCCTCAAGCAGTAAAATCATCCAAGACTGAGAATGAACCGACTAATGTGACAAATTCCGAGCAGAACAATCTGAAGAAGCCAGACAAAATCCTCCCATGCCCTCGTTGCAATAGTTTGGATACAAAATTCTGTTACTATAATAACAACAATGTCAACCAGCCTCGTCATTTCTGCAGGAGCTGCCAGAGGTATTGGACTGCCGGTGGTACCATGAGGAATCTCCCTGTGGGAGCTGGTCGTCGCAAGAACAAGAATCTTGCATCTCAATATCGTAATATAAGTATCCCTGAAGGATTACTAGCAGCAGGAATTGAATCTCCAAATGGGTTAATTCATCATCCATTATTCAAACCAAATGGCACTATTCTATCGTTTGGTCCCGACTTACCCCTGTGTGAACCTATGGCTTCTGCATTAAATCAAGCAGAGAAAAGGGTATCAACTGGTATTCAAAACGGTTCTCATAAATCAGAAGTCAAGAATTCTTCTTGCAAAGGTGGAGATTCTGGGGATGAGTGCTGTAGAGGGATTAACATCCCGACTCCAAATATGATGGTGGAAGAAGGTAAAGGAGAGCCCCACAAGGCTGTTATGCATAGTATAAATGGCATCCCGTCTCCTGTTCCGTGCCTCCATGGAGTACCTTGGCCTTTTCCATGGAATGCTGCAGTTCCTGTGTCGGCTATTTGCCCCATTCCCTTCCCTATGCCATTCTTCCCTACACCTTATTGGAATTGCAGTGTGCCTCCTTGGAGTAATCCTTGGTTGAGTCCACCTCTGCGAGCTGCAAACGAGAAAACATCAGGTTCTGATCCTACTTCTTCTTTAGGGAAACATTCAAGAGAGGGGGATTTGCTTAAGCCAAGCAATCCTGGGGGCAAAGAACAATCAGAACAAAAGTATTCAGAGGGGTCTATTTTGGTCCCAAAAACATTGCGGATTGATGATCCTGATGAAGCTGCTAAGAGTTCTATATGGTCAACACTTGGGATTAAATATGATTCTACTAACAGGGGAGAGTTTTTCAAGGCCTTGCAACCAAAAAGCAATGACAAGCACAACAAAGCCAATACATTTCCAGTATTGCATACTAACCCTGCAGCCTTATCTAGATCTATCACCTTCCAACAAGGTGCCTAAAGATGATCCTATGAATCTGCGAAGGATGGTCTTCACTTGAAATTAAGTATGACTGTTGTCTGATGAGGGCTTTTTGGGGCCTAGCAACCAAAAAGTAACAAAGCTAAGATAATGCTTTTTTCTCCCATTGAACTCCAGCGGGAAACTTCATGGATTTCCTGCCTGATGGGGACATTTACAGTGCGCAGATCACTTACAGAGCTGCCAGGCTAATATCTCTCAAGTGATCCAATGAAACTGGGGAATGACATGGGAAGCTATTGTAGAAACCTATTGTTTATAGTTTTCTTGGTAACAATAAGAGCAAGTGGCTGGCTTGGTTTTTACTTTTGTGTGTTTTCTAATGTACATACCTTTTTACAGCTAACACTAGAGTGAGGAAGACAGTTGTTTAGATCCTCATCCAACAGTTGTTGTAACATATTTTAAATTAATGTCAAAGTTAGTTTGGAGAGCCA</genome_strand>
        <mrna_strand>AACGCCAACAGGGCTTTGCTTCTAAAACCGTATCTCTCGTAGAAAAAAAAATCCACTTTTGAAACGTCGTCAACTCGCCGGCGGCGACTTCGTCGGATACTAAACGAGAATCCCCAGAATAATAGAGTGTTTCTACAGTTTCCCTTTTCGTTTTTTTGAATACCCTTTTCGTTTTAGTCTGGAAAATGACTTGTGATTCAAAGATCAAGCTGTTTGGCAAGATACTCCCGGTGGTCGTCTCCGGCGTTGGTAGGGGTTTGTCTGGTAGTGATGGTGTTATATATGATGGAAATAGAAATGGGTCTGATCTTGATCGATGTTTAGAGGGAAGTAAAGCAAGCAGTGTAGAGAAGGATGAAGGAAGTGAGTATGAAAAGCAAGAAGCTGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATATAACTGGAGAGCTCAGTGAAGCTAAATCTGAGGAGGGAGACCAAAATCAGATGATAGAAGAATCAGAAAATCCTAAGACTCCATCAGAATCAGAGAGCAGTCCTAAATCTTCAACTGAGGAAGACCCTCAAGCAGTAAAATCATCCAAGACTGAGAATGAACCGACTAATGTGACAAATTCCGAGCAGAACAATCTGAAGAAGCCAGACAAAATCCTCCCATGCCCTCGTTGCAATAGTTTGGATACAAAATTCTGTTACTATAATAACAACAATGTCAACCAGCCTCGTCATTTCTGCAGGAGCTGCCAGAGGTATTGGACTGCCGGTGGTACCATGAGGAATCTCCCTGTGGGAGCTGGTCGTCGCAAGAACAAGAATCTTGCATCTCAATATCGTAATATAAGTATCCCTGAAGGATTACTAGCAGCAGGAATTGAATCTCCAAATGGGTTAATTCATCATCCATTATTCAAACCAAATGGCACTATTCTATCGTTTGGTCCCGACTTACCCCTGTGTGAACCTATGGCTTCTGCATTAAATCAAGCAGAGAAAAGGGTATCAACTGGTATTCAAAACGGTTCTCATAAATCAGAAGTCAAGAATTCTTCTTGCAAAGGTGGAGATTCTGGGGATGAGTGCTGTAGAGGGATTAACATCCCGACTCCAAATATGATGGTGGAAGAAGGTAAAGGAGAGCCCCACAAGGCTGTTATGCATAGTATAAATGGCATCCCGTCTCCTGTTCCGTGCCTCCATGGAGTACCTTGGCCTTTTCCATGGAATGCTGCAGTTCCTGTGTCGGCTATTTGCCCCATTCCCTTCCCTATGCCATTCTTCCCTACACCTTATTGGAATTGCAGTGTGCCTCCTTGGAGTAATCCTTGGTTGAGTCCACCTCTGCGAGCTGCAAACGAGAAAACATCAGGTTCTGATCCTACTTCTTCTTTAGGGAAACATTCAAGAGAGGGGGATTTGCTTAAGCCAAGCAATCCTGGGGGCAAAGAACAATCAGAACAAAAGTATTCAGAGGGGTCTATTTTGGTCCCAAAAACATTGCGGATTGATGATCCTGATGAAGCTGCTAAGAGTTCTATATGGTCAACACTTGGGATTAAATATGATTCTACTAACAGGGGAGAGTTTTTCAAGGCCTTGCAACCAAAAAGCAATGACAAGCACAACAAAGCCAATACATTTCCAGTATTGCATACTAACCCTGCAGCCTTATCTAGATCTATCACCTTCCAACAAGGTGCCTAAAGATGATCCTATGAATCTGCGAAGGATGGTCTTCACTTGAAATTAAGTATGACTGTTGTCTGATGAGGGCTTTTTGGGGCCTAGCAACCAAAAAGTAACAAAGCTAAGATAATGCTTTTTTCTCCCATTGAACTCCAGCGGGAAACTTCATGGATTTCCTGCCTGATGGGGACATTTACAGTGCGCAGATCACTTACAGAGCTGCCAGGCTAATATCTCTCAAGTGATCCAATGAAACTGGGGAATGACATGGGAAGCTATTGTAGAAACCTATTGTTTATAGTTTTCTTGGTAACAATAAGAGCAAGTGGCTGGCTTGGTTTTTACTTTTGTGTGTTTTCTAATGTACATACCTTTTTACAGCTAACACTAGAGTGAGGAAGACAGTTGTTTAGATCCTCATCCAACAGTTGTTGTAACATATTTTAAATTAATGTCAAAGTTAGTTTGGAGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317042" ref_strand="+" ref_description="SGN-U317042        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 4, chloroplast / LHCI type III CAB-4 (CAB4), identical to SP:P27521 Chlorophyll A-B binding protein 4, chloroplast precursor (LHCI type III CAB-4) (LHCP) {Arabidopsis thaliana} | chr3:17504357-17506018 REVERSE | Aliases: F1P2.20(evalue: 7e-125, score=443) genbank/nr: chlorophyll(evalue: 5e-129, score=463)">
      <seq>caattatattcataacataagactataaaatggccactgtaacaacgcaagcctccgccgcggtcttccctccatccgccactaagacaaggttcctcaacggatcatccggtaaactaaacagagatttctcttttaaatcatcaacgttgtcttacaattcattcaaagttgaagcaaaaaaaggtgaatggcttccaggcttaacctctcctacttaccttaatggaagtcttgcgggtgacaatggttttgatccattgggactcgcggaggatccggagaacttgagatggtttgttcaggctgagctagtgaacggtcgatgggctatgttgggtgttgcagggatgttactacctgaggttttcactagcattggccttcttaacgtaccaaaatggtacgatgctggaaaatcagactactttgcatcatcgtcaacattatttgtgatcgagttcatcttgtttcactacgttgaaattcgacgttggcaagacattaagaaccctggaagtgtgaaccaagatcctattttcaagagctacagtttgcctcctaatgaagttggttatccaggtggcattttcaacccactcaactttgcacccacattggaggcaaaggaaaaggaaattgctaatgggagattggcaatgttagcatttttgggatttatagtgcaacacaatgtgacaggaaagggaccatttgacaacttgttgcagcacatttcagacccatggcacaataccattatccaaacattttccaactaatatgtaatcatgagttagtaatttttttttatgaagaaaaagaaaaacagagagatttattgtaaacaatggaactctactgtacatagcaactaaaattgtatgtcacattcatttatatagcactactactatcatatttaaaaaaaaaaaaaaagtagttctattaattagcattgaaaagagtaatcatatatccctatcatcgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69815" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69515" g_stop="69284" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69283" i_stop="69178" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69177" g_stop="68762" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="648" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68761" i_stop="68673" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68672" g_stop="68332" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="989" r_length="341" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="992" polyA_stop="1008"/>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U317042" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>989</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69515" e_stop="69284"/>
          <exon e_start="69177" e_stop="68762"/>
          <exon e_start="68672" e_stop="68332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATATTCATAACATAAGACTATAAAATGGCCACTGTAACAACGCAAGCCTCCGCCGCGGTCTTCCCTCCATCCGCCACTAAGACAAGGTTCCTCAACGGATCATCCGGTAAACTAAACAGAGATTTCTCTTTTAAATCATCAACGTTGTCTTACAATTCATTCAAAGTTGAAGCAAAAAAAGGTGAATGGCTTCCAGGCTTAACCTCTCCTACTTACCTTAATGGAAGGTAATGTATGTACATTTCAATACAAAATCATGATAACAAATGTGTCATTTGTCTTTGCTTCATACAGACTACTAAACAACTTGTAATATATAATGGTTTGTTGTAGTCTTGCGGGTGACAATGGTTTTGATCCATTGGGACTCGCGGAGGATCCGGAGAACTTGAGATGGTTTGTTCAGGCTGAGCTAGTGAACGGTCGATGGGCTATGTTGGGTGTTGCAGGGATGTTACTACCTGAGGTTTTCACTAGCATTGGCCTTCTTAACGTACCAAAATGGTACGATGCTGGAAAATCAGACTACTTTGCATCATCGTCAACATTATTTGTGATCGAGTTCATCTTGTTTCACTACGTTGAAATTCGACGTTGGCAAGACATTAAGAACCCTGGAAGTGTGAACCAAGATCCTATTTTCAAGAGCTACAGTTTGCCTCCTAATGAAGTTGGTTATCCAGGTGGCATTTTCAACCCACTCAACTTTGCACCCACATTGGAGGCAAAGGAAAAGGAAATTGCTAATGGTAAGTCAATAATTAACACAATCATCAGCTCCGCGTGTGTATTATTATTATCGATGTATATAAGTTAAACTGTTTCTGTGGATTTGCAGGGAGATTGGCAATGTTAGCATTTTTGGGATTTATAGTGCAACACAATGTGACAGGAAAGGGACCATTTGACAACTTGTTGCAGCACATTTCAGACCCATGGCACAATACCATTATCCAAACATTTTCCAACTAATATGTAATCATGAGTTAGTAATTTTTTTTTATGAAGAAAAAGAAAAACAGAGAGATTTATTGTAAACAATGGAACTCTACTGTACATAGCAACTAAAATTGTATGTCACATTCATTTATATAGCACTACTACTATCATATTTCTTGAAATTTGGCAAGTAGTTCTATTAATTAGCATTGAAAAGAGTAATCATATATCACTATCATC</genome_strand>
        <mrna_strand>CAATTATATTCATAACATAAGACTATAAAATGGCCACTGTAACAACGCAAGCCTCCGCCGCGGTCTTCCCTCCATCCGCCACTAAGACAAGGTTCCTCAACGGATCATCCGGTAAACTAAACAGAGATTTCTCTTTTAAATCATCAACGTTGTCTTACAATTCATTCAAAGTTGAAGCAAAAAAAGGTGAATGGCTTCCAGGCTTAACCTCTCCTACTTACCTTAATGGAAG..........................................................................................................TCTTGCGGGTGACAATGGTTTTGATCCATTGGGACTCGCGGAGGATCCGGAGAACTTGAGATGGTTTGTTCAGGCTGAGCTAGTGAACGGTCGATGGGCTATGTTGGGTGTTGCAGGGATGTTACTACCTGAGGTTTTCACTAGCATTGGCCTTCTTAACGTACCAAAATGGTACGATGCTGGAAAATCAGACTACTTTGCATCATCGTCAACATTATTTGTGATCGAGTTCATCTTGTTTCACTACGTTGAAATTCGACGTTGGCAAGACATTAAGAACCCTGGAAGTGTGAACCAAGATCCTATTTTCAAGAGCTACAGTTTGCCTCCTAATGAAGTTGGTTATCCAGGTGGCATTTTCAACCCACTCAACTTTGCACCCACATTGGAGGCAAAGGAAAAGGAAATTGCTAATG.........................................................................................GGAGATTGGCAATGTTAGCATTTTTGGGATTTATAGTGCAACACAATGTGACAGGAAAGGGACCATTTGACAACTTGTTGCAGCACATTTCAGACCCATGGCACAATACCATTATCCAAACATTTTCCAACTAATATGTAATCATGAGTTAGTAATTTTTTTTTATGAAGAAAAAGAAAAACAGAGAGATTTATTGTAAACAATGGAACTCTACTGTACATAGCAACTAAAATTGTATGTCACATTCATTTATATAGCACTACTACTATCATATTTAAAAAAAAAAAAAAAGTAGTTCTATTAATTAGCATTGAAAAGAGTAATCATATATCCCTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335923" ref_strand="+" ref_description="SGN-U335923        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein 4, chloroplast / LHCI type III CAB-4 (CAB4), identical to SP:P27521 Chlorophyll A-B binding protein 4, chloroplast precursor (LHCI type III CAB-4) (LHCP) {Arabidopsis thaliana} | chr3:17504357-17506018 REVERSE | Aliases: F1P2.20(evalue: 3e-101, score=306) genbank/nr: chlorophyll(evalue: 6e-102, score=313)">
      <seq>gcacgagcctccatccgccactaagacaaggttcctcaacggatcatccggtaaactaaacagagatttctcttttaaatcatcaacgttgtcttacaattcattcaaagttgaagcaaaaaaaggtgaatggcttccaggcttaacctctcctacttaccttaatggaaggtaatgtatgtacatttcaatacaaaatcatgataacaaatgtgtcatttgtctttgcttcatacagactactaaacaacttgtaatatataatggtttgttgtagtcttgcgggtgacaatggttttgatccattgggactcgcggaggatccggagaacttgagatggtttgttcaggctgagctagtgaacggtcgatgggctatgttgggtgttgcagggatgttactacctgaggttttcactagcattggccttcttaacgtaccaaaatggtacgatgctggaaaatcagactactttgcatcatcgtcaacattatttgtgatcgagttcatcttgtttcactacgttgaaattcgacgttggcaagacattaagaaccctggaagtgtgaaccaagatcctattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69747" stop="68567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69454" g_stop="68867" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U335923" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69454" e_stop="68867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTCCCTCCATCCGCCACTAAGACAAGGTTCCTCAACGGATCATCCGGTAAACTAAACAGAGATTTCTCTTTTAAATCATCAACGTTGTCTTACAATTCATTCAAAGTTGAAGCAAAAAAAGGTGAATGGCTTCCAGGCTTAACCTCTCCTACTTACCTTAATGGAAGGTAATGTATGTACATTTCAATACAAAATCATGATAACAAATGTGTCATTTGTCTTTGCTTCATACAGACTACTAAACAACTTGTAATATATAATGGTTTGTTGTAGTCTTGCGGGTGACAATGGTTTTGATCCATTGGGACTCGCGGAGGATCCGGAGAACTTGAGATGGTTTGTTCAGGCTGAGCTAGTGAACGGTCGATGGGCTATGTTGGGTGTTGCAGGGATGTTACTACCTGAGGTTTTCACTAGCATTGGCCTTCTTAACGTACCAAAATGGTACGATGCTGGAAAATCAGACTACTTTGCATCATCGTCAACATTATTTGTGATCGAGTTCATCTTGTTTCACTACGTTGAAATTCGACGTTGGCAAGACATTAAGAACCCTGGAAGTGTGAACCAAGATCCTATTTTCA</genome_strand>
        <mrna_strand>GCACGAGCCTCCATCCGCCACTAAGACAAGGTTCCTCAACGGATCATCCGGTAAACTAAACAGAGATTTCTCTTTTAAATCATCAACGTTGTCTTACAATTCATTCAAAGTTGAAGCAAAAAAAGGTGAATGGCTTCCAGGCTTAACCTCTCCTACTTACCTTAATGGAAGGTAATGTATGTACATTTCAATACAAAATCATGATAACAAATGTGTCATTTGTCTTTGCTTCATACAGACTACTAAACAACTTGTAATATATAATGGTTTGTTGTAGTCTTGCGGGTGACAATGGTTTTGATCCATTGGGACTCGCGGAGGATCCGGAGAACTTGAGATGGTTTGTTCAGGCTGAGCTAGTGAACGGTCGATGGGCTATGTTGGGTGTTGCAGGGATGTTACTACCTGAGGTTTTCACTAGCATTGGCCTTCTTAACGTACCAAAATGGTACGATGCTGGAAAATCAGACTACTTTGCATCATCGTCAACATTATTTGTGATCGAGTTCATCTTGTTTCACTACGTTGAAATTCGACGTTGGCAAGACATTAAGAACCCTGGAAGTGTGAACCAAGATCCTATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346620" ref_strand="+" ref_description="SGN-U346620        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 5e-05, score=51.6)">
      <seq>ccaccaccattccaaatcttttccagtatcgacttctcatttgcttctttttcatcagtttagatacagttattgtctttatatagtctttgtgtttttgttgttgtgattcttagttgtttttttttttgtagaaattcacttgtgtccctcagtttgtggtaaattttgtttctttgcttcatttatcagctcaaatctatgcgcctctgcctatgatggcattaaatatactttgagtatttcactatgaaacaacttgtaatctgaggcttgaggctttatcaattccttgtgtattcgtgaacttttgcgatccatctttgcttgtttaattaatgggtctgatatccttttgctaaaggaagaagctttatataatacataagaatttcaaaatgttactactttcgctgactttctttttgaaattcattatgcctctgcttttccagtagtgagagtcttggttattattatatatgtattccgcagggcagttgtcaagattatgattttgaaatagcttgctttggatcctatttaatttgctaattcaatgcttatagtcatgttgcatttttggcggatggtttataaagaatttgatatgagggatacacttgtttatcttaactatgaactcgtcataatctttaccattttcagtttttccctcatttggtcattgncatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70203" stop="71504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70503" g_stop="71204" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U346620" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70503" e_stop="71204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACCATTCCAAATCTTTTCCAGTATCGACTTCTCATTTGCTTCTTTTTCATCAGTTTAGATACAGTTATTGTCTTTATATAGTCTTTGTGTTTTTGTTGTTGTGATTCTTAGTTGTTTTTTTTTTTGTAGAAATTCACTTGTGTCCCTCAGTTTGTGGTAAATTTTGTTTCTTTGCTTCATTTATCAGCTCAAATCTATGCGCCTCTGCCTATGATGGCATTAAATATACTTTGAGTATTTCACTATGAAACAACTTGTAATCTGAGGCTTGAGGCTTTATCAATTCCTTGTGTATTCGTGAACTTTTGCGATCCATCTTTGCTTGTTTAATTAATGGGTCTGATATCCTTTTGCTAAAGGAAGAAGCTTTATATAATACATAAGAATTTCAAAATGTTACTACTTTCGCTGACTTTCTTTTTGAAATTCATTATGCCTCTGCTTTTCCAGTAGTGAGAGTCTTGGTTATTATTATATATGTATTCCGCAGGGCAGTTGTCAAGATTATGATTTTGAAATAGCTTGCTTTGGATCCTATTTAATTTGCTAATTCAATGCTTATAGTCATGTTGCATTTTTGGCGGATGGTTTATAAAGAATTTGATATGAGGGATACACTTGTTTATCTTAACTATGAACTCGTCATAATCTTTAACCATTTTCAGTTTTTCCCTCATTTGGTCATTGCAATGATGAT</genome_strand>
        <mrna_strand>CCACCACCATTCCAAATCTTTTCCAGTATCGACTTCTCATTTGCTTCTTTTTCATCAGTTTAGATACAGTTATTGTCTTTATATAGTCTTTGTGTTTTTGTTGTTGTGATTCTTAGTTGTTTTTTTTTTTGTAGAAATTCACTTGTGTCCCTCAGTTTGTGGTAAATTTTGTTTCTTTGCTTCATTTATCAGCTCAAATCTATGCGCCTCTGCCTATGATGGCATTAAATATACTTTGAGTATTTCACTATGAAACAACTTGTAATCTGAGGCTTGAGGCTTTATCAATTCCTTGTGTATTCGTGAACTTTTGCGATCCATCTTTGCTTGTTTAATTAATGGGTCTGATATCCTTTTGCTAAAGGAAGAAGCTTTATATAATACATAAGAATTTCAAAATGTTACTACTTTCGCTGACTTTCTTTTTGAAATTCATTATGCCTCTGCTTTTCCAGTAGTGAGAGTCTTGGTTATTATTATATATGTATTCCGCAGGGCAGTTGTCAAGATTATGATTTTGAAATAGCTTGCTTTGGATCCTATTTAATTTGCTAATTCAATGCTTATAGTCATGTTGCATTTTTGGCGGATGGTTTATAAAGAATTTGATATGAGGGATACACTTGTTTATCTTAACTATGAACTCGTCATAATCTTT-ACCATTTTCAGTTTTTCCCTCATTTGGTCATTGNCATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341081" ref_strand="+" ref_description="SGN-U341081        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 5e-24, score=114)">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="-" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79373" stop="78274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79073" g_stop="78572" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="-" ref_id="SGN-U341081" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79073" e_stop="78572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325856" ref_strand="+" ref_description="SGN-U325856        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tattaatatttcggcaaatattcaagtgcttttctccgctattttcctgctttgttcgagtacaaggtgaatcattttgttttgtttaacaggtttcatatttgaagttccagttgaagattaactgaaaaaggatttgtttatttgtttgaatgtatatatgtctatatattttattttttccgctattttatttattcgaatgttgtaacaattgtaaccctaagatcatataataaagttatttgggggtcgtctaggggagggggatttatatgcttacttgctcattatttttttttttagaaatcatgcctataggtttgtctttaaccacctagatttgatatttgtaggtgttataatctaatcaattttcaatttgcttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29307" stop="88513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87827" g_stop="88214" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="407"/>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U325856" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87827" e_stop="88214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCGTACTTGCTCATTA---TTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC</genome_strand>
        <mrna_strand>TATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCCAGTTGAAGATTAACTGAAAAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330621" ref_strand="+" ref_description="SGN-U330621        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hypothetical protein, contains Pfam profile PF05056: Protein of unknown function (DUF674) | chr5:51987-53648 FORWARD | Aliases: F7J8.130, F7J8_130(evalue: 1e-14, score=76.6) genbank/nr: gi|55770379|ref|XP_550180.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] >gi|54290459|dbj|BAD61346.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] (evalue: 5e-34, score=147)">
      <seq>tcattttctctctcaagatcgtagggtttctctctccaatatttcacctttactttgcagatcctcaacattcagagccaaaatggcgactacttgtgatactaaattgagcatgaagcttttgattgacaccaaggctggcaaagtcctatttgccgaggctgataaggactgtgttgatttcctctttcacattctctcattgcctgctggaaccgttatcagtcttcttaaggagaaaggaatgagtggttccttgcctaacctctacgaaagtgtagaaaatctgaaggacacctatattcaatcgaaccaatgcaaggatatccttttaaaacccaagtcttcagttgggatctctccagttccttttctattgcttgatggccatgttacgacacgtgagaagactttttacggctgttcctactctagttcccacttaactgtttctgatgaccctactgctctctgtacaatctgtaatcatactatgtcagataagttagtttatgctgctccgcgagtagcaggtggagctgtggaagcaaaaggaaaagggggttttgtgaaggatgttgtgacatacatggtggcagatgacttggtagtcaagcccatgtccaccatctcttgcattgctcttctcaacaagtttaatgtcagggatgttggtgtactagaggaggaagttgtaagtttcggagtggaagaggcactggagttgctgaaggcatctttggagtcgaaaaagttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0066I09-VRfsh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0066I09.1" temp_strand="+" temp_description="C06HBa0066I09.1  AC211036.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0066I09 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94220" stop="96941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94520" g_stop="94579" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94580" i_stop="95740" i_length="1161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.528" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95741" g_stop="96395" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="715" r_length="655" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96396" i_stop="96595" i_length="200">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96596" g_stop="96641" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="760" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0066I09.1" gen_strand="+" ref_id="SGN-U330621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0066I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94520" e_stop="94579"/>
          <exon e_start="95741" e_stop="96395"/>
          <exon e_start="96596" e_stop="96641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCTCTCTCAAGATCGTAGGGTTTCTCTCTCCAATATTTCACCTTTACTTTGCAGGTAAGTTTTCTGGTGTAGAATTCTTATAAACTGCTTGTATAATTTTATAGATATTTAGCCATTTAGTTAATTTCTTAATATGATTTAAACCAGTATTGGGTAGGTGGGGAATAAATAATGAACTTGAAAAGTTGCTTATGAAATTTATTTTTAAGTAATTTGAAAAAATCTTTGGTAAAATTTAACAATTGTACAGAAGCATTCTCTCTTGTGATAGAATCTGACTTGTAATCTTATTTTAGATAGAACATACTCCTATAATGGTTAAGGAGGTAGATTGTAAAGAGTATATCTGTATAGAATTAAGATTTAAGAATGTAATTTTGGTTTCATACTTTAATCGTAAGGCTTAGATAAGATGGTTTAGTAAGAGTGGGTAATGGGAACTTTATTGCAGTGCACAACTGGGCATTTCATTGCAAACTCCTTGTGTTTCTACATTGTATGAGATTAACGAAGAGAACTTTGATTAGTGTATATGCATTTATCTAAATCGGAAAAGATATCGAACATTGGATGAAAAGCCATTGCTTTAGAGGCTTGACCCTTTGGCCAGCCCTGTCTCTTGGGATAACATAGGACCTATCTATTTTGGGGAAGATTAACATAAAAATATATATGTGGTCAAAATAGTGGAAAAATAACGGGTCAAGTAGTGAGAAATTTTTATGCCGTGTAATCATGAATATAATACTCAAAGTGAACACCTTATGTAATATTGCTCACACTTTATTTTTCTTGTATAGTATATATAAAAGCAGCAGTTTGCTCTCAAATATTTTTTCTTTGTATCTTGATTTGTTCTTACAAATGAGCAACACTGCTCTAATTATAGAAAAAACTAGTACCTACGATGTACAACATGAAAGAACCATTATTTCAAATTTTGGTACGTTTCTTGGTAAGATTTGGTTTGAAAAAAATGATGATGTTATGGTTATAGAGATTTGTACCAAGTTGCAGCAAAGTTGACTTTAACAATGGGAAATGGGGCTGGAACCCCACACAATCATAGTTGTGCAATTGAAATTATACACATTCTGTTTTTTTCTGCATATAATATGATCAGGAAGGGACTCGATGAAAGTCAAGTTTACATAGCGTAAATTGTCCTGTTTTAGCTCTCTTTGTTCACTGTGTTTGTGCATTGATAAAGTGTAGATCCTCAACATTCAGAGCCAAAATGGCGACTACTTGTGATACTAAATTGAGCATGAAGCTTTTGATTGACACCAAGGCTGGCAAAGTCCTATTTGCCGAGGCTGATAAGGACTGTGTTGATTTCCTCTTTCACATTCTCTCATTGCCTGCTGGAACCGTTATCAGTCTTCTTAAGGAGAAAGGAATGAGTGGTTCCTTGCCTAACCTCTACGAAAGTGTAGAAAATCTGAAGGACACCTATATTCAATCGAACCAATGCAAGGATATCCTTTTAAAACCCAAGTCTTCAGTTGGGATCTCTCCAGTTCCTTTTCTATTGCTTGATGGCCATGTTACGACACGTGAGAAGACTTTTTACGGCTGTTCCTACTCTAGTTCCCACTTAACTGTTTCTGATGACCCTACTGCTCTCTGTACAATCTGTAATCATACTATGTCAGATAAGTTAGTTTATGCTGCTCCGCGAGTAGCAGGTGGAGCTGTGGAAGCAAAAGGAAAAGGGGGTTTTGTGAAGGATGTTGTGACATACATGGTGGCAGATGACTTGGTAGTCAAGCCCATGTCCACCATCTCTTGCATTGCTCTTCTCAACAAGTTTAATGTCAGGGATGTTGGTGTACTAGAGGAGGAAGTTGTAAGTTTCGGAGTGGAAGAGGTAATCACTTATCCTCACAATTTAAAGATTTTTTATACTGTCAAGTCTCTTGAGGTCTGCGTACATGTACACCACCCTTCCCAAACCCCAGTGTTGGGATTACATTGGGTGTGTGTGAAATAAACTCGGTAAATTTTGCTCTGTGTCATTTGTCTATCGTTTTCTATTCGGTTAAGTAGTGAACTCCTCTTATTATGCAGGCACTGGAGTTGCTGAAGGCATCTTTGGAGTCGAAAACAGTTCTGA</genome_strand>
        <mrna_strand>TCATTTTCTCTCTCAAGATCGTAGGGTTTCTCTCTCCAATATTTCACCTTTACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAACATTCAGAGCCAAAATGGCGACTACTTGTGATACTAAATTGAGCATGAAGCTTTTGATTGACACCAAGGCTGGCAAAGTCCTATTTGCCGAGGCTGATAAGGACTGTGTTGATTTCCTCTTTCACATTCTCTCATTGCCTGCTGGAACCGTTATCAGTCTTCTTAAGGAGAAAGGAATGAGTGGTTCCTTGCCTAACCTCTACGAAAGTGTAGAAAATCTGAAGGACACCTATATTCAATCGAACCAATGCAAGGATATCCTTTTAAAACCCAAGTCTTCAGTTGGGATCTCTCCAGTTCCTTTTCTATTGCTTGATGGCCATGTTACGACACGTGAGAAGACTTTTTACGGCTGTTCCTACTCTAGTTCCCACTTAACTGTTTCTGATGACCCTACTGCTCTCTGTACAATCTGTAATCATACTATGTCAGATAAGTTAGTTTATGCTGCTCCGCGAGTAGCAGGTGGAGCTGTGGAAGCAAAAGGAAAAGGGGGTTTTGTGAAGGATGTTGTGACATACATGGTGGCAGATGACTTGGTAGTCAAGCCCATGTCCACCATCTCTTGCATTGCTCTTCTCAACAAGTTTAATGTCAGGGATGTTGGTGTACTAGAGGAGGAAGTTGTAAGTTTCGGAGTGGAAGAG........................................................................................................................................................................................................GCACTGGAGTTGCTGAAGGCATCTTTGGAGTCGAAAA-AGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9884" PGL_stop="9061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9884" e_stop="9061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="9884" e_stop="9061" e_length="824"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9884" stop="9061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATAGTTTTCACAAGTCTATAAACTCCTTCCTATTTTATAGGTTATGAGCTTTCTAATTATCTTTCGTCTCTTGTTTGTTGGTAAACTGTTTTTTTCTGAGTTTCGTTCTGTCCCTTCCTGTCTCAAAGGTTATCATATAACTCTTTTACACTAGTAAAGATATTAACCCATAAAGCTCCTCCCAGAAATCGTTGCTTCTGGATCAAACTCTCTTCAAAATTTTCATCAAACAACAGAAACCTGAAGCATTTCGTCTCCATGGAAGCCAATAATAATGTAACCAGCCTTCGCGTAGCATCATTTTCTTGTTACCTTAGCAACCCTGACGATCAGAGTTTTTTACATAAACTAGGAGGCTCTTATGAAGAGCCTTATTCTGCTGTTGTTTTACCACCTGAGAACCCCTTTTCTGTAAGAGCTACTAAGGCACCTACTAGTAAACCATCCTCGAATAACCCTCGAGACAGCCTTGCCAATCTTCGCGTTGAGTCTTTCTCTTCTTATCTCAAGACTGATGAAGACAACTTTGCATTTAAGACCTCAGGTGCTTCTCCTGTTCAAGATCCTACTATTGCATTTGTTTTTTCTCAGCAAACTTTGGTTAGCACTCAGAAACACCAAGAAAGAACCAAGTTGAAAGATGGGGAACTAAGCATATTTGGAGCTGACAAGTATTTCAACAAGAAACTGGAATATGGAGCTGCCGCTACATCTGTGGTGAAGTATGGCGGGCAGATGAACAACGGGATGGTGGATCTTCCCCACCCGAAACCAAGTTCCCAGACAGGAACTCCAAGCATCCATTCAGAAGCAAGCAGTTT</gDNA_template>
            <first_frame> S  I  V  F  T  S  L  *  T  P  S  Y  F  I  G  Y  E  L  S  N  Y  L  S  S  L  V  C  W  *  T  V  F  F  *  V  S  F  C  P  F  L  S  Q  R  L  S  Y  N  S  F  T  L  V  K  I  L  T  H  K  A  P  P  R  N  R  C  F  W  I  K  L  S  S  K  F  S  S  N  N  R  N  L  K  H  F  V  S  M  E  A  N  N  N  V  T  S  L  R  V  A  S  F  S  C  Y  L  S  N  P  D  D  Q  S  F  L  H  K  L  G  G  S  Y  E  E  P  Y  S  A  V  V  L  P  P  E  N  P  F  S  V  R  A  T  K  A  P  T  S  K  P  S  S  N  N  P  R  D  S  L  A  N  L  R  V  E  S  F  S  S  Y  L  K  T  D  E  D  N  F  A  F  K  T  S  G  A  S  P  V  Q  D  P  T  I  A  F  V  F  S  Q  Q  T  L  V  S  T  Q  K  H  Q  E  R  T  K  L  K  D  G  E  L  S  I  F  G  A  D  K  Y  F  N  K  K  L  E  Y  G  A  A  A  T  S  V  V  K  Y  G  G  Q  M  N  N  G  M  V  D  L  P  H  P  K  P  S  S  Q  T  G  T  P  S  I  H  S  E  A  S  S   </first_frame>
            <second_frame>  L  *  F  S  Q  V  Y  K  L  L  P  I  L  *  V  M  S  F  L  I  I  F  R  L  L  F  V  G  K  L  F  F  S  E  F  R  S  V  P  S  C  L  K  G  Y  H  I  T  L  L  H  *  *  R  Y  *  P  I  K  L  L  P  E  I  V  A  S  G  S  N  S  L  Q  N  F  H  Q  T  T  E  T  *  S  I  S  S  P  W  K  P  I  I  M  *  P  A  F  A  *  H  H  F  L  V  T  L  A  T  L  T  I  R  V  F  Y  I  N  *  E  A  L  M  K  S  L  I  L  L  L  F  Y  H  L  R  T  P  F  L  *  E  L  L  R  H  L  L  V  N  H  P  R  I  T  L  E  T  A  L  P  I  F  A  L  S  L  S  L  L  I  S  R  L  M  K  T  T  L  H  L  R  P  Q  V  L  L  L  F  K  I  L  L  L  H  L  F  F  L  S  K  L  W  L  A  L  R  N  T  K  K  E  P  S  *  K  M  G  N  *  A  Y  L  E  L  T  S  I  S  T  R  N  W  N  M  E  L  P  L  H  L  W  *  S  M  A  G  R  *  T  T  G  W  W  I  F  P  T  R  N  Q  V  P  R  Q  E  L  Q  A  S  I  Q  K  Q  A  V  </second_frame>
            <third_frame>   Y  S  F  H  K  S  I  N  S  F  L  F  Y  R  L  *  A  F  *  L  S  F  V  S  C  L  L  V  N  C  F  F  L  S  F  V  L  S  L  P  V  S  K  V  I  I  *  L  F  Y  T  S  K  D  I  N  P  *  S  S  S  Q  K  S  L  L  L  D  Q  T  L  F  K  I  F  I  K  Q  Q  K  P  E  A  F  R  L  H  G  S  Q  *  *  C  N  Q  P  S  R  S  I  I  F  L  L  P  *  Q  P  *  R  S  E  F  F  T  *  T  R  R  L  L  *  R  A  L  F  C  C  C  F  T  T  *  E  P  L  F  C  K  S  Y  *  G  T  Y  *  *  T  I  L  E  *  P  S  R  Q  P  C  Q  S  S  R  *  V  F  L  F  L  S  Q  D  *  *  R  Q  L  C  I  *  D  L  R  C  F  S  C  S  R  S  Y  Y  C  I  C  F  F  S  A  N  F  G  *  H  S  E  T  P  R  K  N  Q  V  E  R  W  G  T  K  H  I  W  S  *  Q  V  F  Q  Q  E  T  G  I  W  S  C  R  Y  I  C  G  E  V  W  R  A  D  E  Q  R  D  G  G  S  S  P  P  E  T  K  F  P  D  R  N  S  K  H  P  F  R  S  K  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9782" stop="9063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSFCPFLSQRLSYNSFTLVKILTHKAPPRNRCFWIKLSSKFSSNNRNLKHFVSMEANNNVTSLRVASFSCYLSNPDDQSFLHKLGGSYEEPYSAVVLPPENPFSVRATKAPTSKPSSNNPRDSLANLRVESFSSYLKTDEDNFAFKTSGASPVQDPTIAFVFSQQTLVSTQKHQERTKLKDGELSIFGADKYFNKKLEYGAAATSVVKYGGQMNNGMVDLPHPKPSSQTGTPSIHSEASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15418" PGL_stop="14181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15418" e_stop="15394"/>
            <exon e_start="15141" e_stop="14484"/>
            <exon e_start="14274" e_stop="14181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15418" e_stop="15394" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15393" i_stop="15142" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="15141" e_stop="14484" e_length="658"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14483" i_stop="14275" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="14274" e_stop="14181" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15418" stop="15394"/>
              <exon start="15141" stop="14484"/>
              <exon start="14274" stop="14181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTGCTGCTTCTCTGATATCCA : GTTGATCATGGCAACAAAAGGAAATCCAGGGGATAACAGAAATAAAAGCTTTTTACCATCATTACTTGTCATAGCTGCACTTTGTTGTTTCTTCTATGTTCTTGGAGTGTGGAAAAGAAGTGGTTTTGGGAAGGGAGACAGCATAGCACTTGAAATAACAAAGAAGGCAGAGGACTGCGGTATCCTTCCTAATTTGGAGTATGAAACTCACCATGGGAATCAAAGCACCTCGTTCGATGATCCCAAGCAAGATGTCAAGGAGATTGAGCCATGTGGCGAGCAATACATTGATTATACACCATGTCATGATCAAATGCGAGCAATGACATTTCCTAGAGAAAATATGAACTATAGGGAGAGACATTGTCCTCCAGATGAAGAGAAGCTGCATTGTCTTGTTCCAGCTCCAAAAGGATATGTCACTCCTTTTTCATGGCCAAAGAGTCGTGACTATGTACCTTTTGCAAATGCACCACATAAGAGCTTAACAGTCGAGAAGGCAGTGCAAAATTGGGTTCAATATGAAGGAGATGTATTTAGATTTCCAGGTGGTGGAACACAGTTCCCCAATGGGGCAGATGCATATATTGATCAACTTGCTTCTGTTATACCGATGGAAAATGGTACTGTAAGAACTGCATTGGATACCGGATGTGGG : GTTGCAAGTTGGGGTGCATACCTTTTCAAGAAGAATGTTCTAACCATGTCCTTCGCACCCAGAGACTCGCATGAAGCTCAAGTTCAATTTGCTT</gDNA_template>
            <first_frame> N  I  A  A  S  L  I  S   : S  *  S  W  Q  Q  K  E  I  Q  G  I  T  E  I  K  A  F  Y  H  H  Y  L  S  *  L  H  F  V  V  S  S  M  F  L  E  C  G  K  E  V  V  L  G  R  E  T  A  *  H  L  K  *  Q  R  R  Q  R  T  A  V  S  F  L  I  W  S  M  K  L  T  M  G  I  K  A  P  R  S  M  I  P  S  K  M  S  R  R  L  S  H  V  A  S  N  T  L  I  I  H  H  V  M  I  K  C  E  Q  *  H  F  L  E  K  I  *  T  I  G  R  D  I  V  L  Q  M  K  R  S  C  I  V  L  F  Q  L  Q  K  D  M  S  L  L  F  H  G  Q  R  V  V  T  M  Y  L  L  Q  M  H  H  I  R  A  *  Q  S  R  R  Q  C  K  I  G  F  N  M  K  E  M  Y  L  D  F  Q  V  V  E  H  S  S  P  M  G  Q  M  H  I  L  I  N  L  L  L  L  Y  R  W  K  M  V  L  *  E  L  H  W  I  P  D  V  G :   L  Q  V  G  V  H  T  F  S  R  R  M  F  *  P  C  P  S  H  P  E  T  R  M  K  L  K  F  N  L  L </first_frame>
            <second_frame>  T  L  L  L  L  *  Y  P  :  V  D  H  G  N  K  R  K  S  R  G  *  Q  K  *  K  L  F  T  I  I  T  C  H  S  C  T  L  L  F  L  L  C  S  W  S  V  E  K  K  W  F  W  E  G  R  Q  H  S  T  *  N  N  K  E  G  R  G  L  R  Y  P  S  *  F  G  V  *  N  S  P  W  E  S  K  H  L  V  R  *  S  Q  A  R  C  Q  G  D  *  A  M  W  R  A  I  H  *  L  Y  T  M  S  *  S  N  A  S  N  D  I  S  *  R  K  Y  E  L  *  G  E  T  L  S  S  R  *  R  E  A  A  L  S  C  S  S  S  K  R  I  C  H  S  F  F  M  A  K  E  S  *  L  C  T  F  C  K  C  T  T  *  E  L  N  S  R  E  G  S  A  K  L  G  S  I  *  R  R  C  I  *  I  S  R  W  W  N  T  V  P  Q  W  G  R  C  I  Y  *  S  T  C  F  C  Y  T  D  G  K  W  Y  C  K  N  C  I  G  Y  R  M  W   : G  C  K  L  G  C  I  P  F  Q  E  E  C  S  N  H  V  L  R  T  Q  R  L  A  *  S  S  S  S  I  C   </second_frame>
            <third_frame>   H  C  C  F  S  D  I  Q :   L  I  M  A  T  K  G  N  P  G  D  N  R  N  K  S  F  L  P  S  L  L  V  I  A  A  L  C  C  F  F  Y  V  L  G  V  W  K  R  S  G  F  G  K  G  D  S  I  A  L  E  I  T  K  K  A  E  D  C  G  I  L  P  N  L  E  Y  E  T  H  H  G  N  Q  S  T  S  F  D  D  P  K  Q  D  V  K  E  I  E  P  C  G  E  Q  Y  I  D  Y  T  P  C  H  D  Q  M  R  A  M  T  F  P  R  E  N  M  N  Y  R  E  R  H  C  P  P  D  E  E  K  L  H  C  L  V  P  A  P  K  G  Y  V  T  P  F  S  W  P  K  S  R  D  Y  V  P  F  A  N  A  P  H  K  S  L  T  V  E  K  A  V  Q  N  W  V  Q  Y  E  G  D  V  F  R  F  P  G  G  G  T  Q  F  P  N  G  A  D  A  Y  I  D  Q  L  A  S  V  I  P  M  E  N  G  T  V  R  T  A  L  D  T  G  C  G  :  V  A  S  W  G  A  Y  L  F  K  K  N  V  L  T  M  S  F  A  P  R  D  S  H  E  A  Q  V  Q  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15416" stop="15394"/>
                    <exon start="15141" stop="14484"/>
                    <exon start="14274" stop="14182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCCFSDIQLIMATKGNPGDNRNKSFLPSLLVIAALCCFFYVLGVWKRSGFGKGDSIALEITKKAEDCGILPNLEYETHHGNQSTSFDDPKQDVKEIEPCGEQYIDYTPCHDQMRAMTFPRENMNYRERHCPPDEEKLHCLVPAPKGYVTPFSWPKSRDYVPFANAPHKSLTVEKAVQNWVQYEGDVFRFPGGGTQFPNGADAYIDQLASVIPMENGTVRTALDTGCGVASWGAYLFKKNVLTMSFAPRDSHEAQVQFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31375" PGL_stop="26652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31375" e_stop="31285"/>
            <exon e_start="27368" e_stop="26652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31375" e_stop="31285" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31284" i_stop="27369" i_length="3916"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="27368" e_stop="26652" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31375" stop="31285"/>
              <exon start="27368" stop="26652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAG : GTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCCTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGCGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K   : G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  R  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  :  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  P  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R :   F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  A  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31373" stop="31285"/>
                    <exon start="27368" stop="26654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYAFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30564" PGL_stop="31257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30564" e_stop="31257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="30564" e_stop="31257" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30564" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCACTTCCCATGAACTTCAAAAAGAATTATGTGCATTTATATGTAATTGTTTATGTGCCTACGTGTGAACTAAATATTTTAAATCATTTGTTAAAAACATAAATTTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCACGATCAATAATATCGTGGCATCATCCCTATAAAGAAATAAACATTTTTAAAAAAAAATAAAAATTCCTATTCATAAACTTATCAATTTTTAACTTTACTTTTGCACATACTAATTGCTTAATATTTGCCAATTTTGTCTATAACATAGTGTCGTATGTCAAAAATAAATAAAATGAGCTTAATTGTTTATTTATTGTCATCACCTAGCTTTACATATCTAAATAAATAAGAATAATAGTCTTAATTGTTTCGTATTTGTTATCACTTAGTAAGATTAAATAAATTAATAAACGACCTTGATTGCTACTTGTACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGGCCCTTTGACTTTAGTTAGACTTAGTTAGGTTAGATAGGTGCCCTAACGCGCCTTAATTCGTTAGGTGGCGACTCCAAAAAACTCGAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCC</gDNA_template>
            <first_frame> T  T  S  H  E  L  Q  K  E  L  C  A  F  I  C  N  C  L  C  A  Y  V  *  T  K  Y  F  K  S  F  V  K  N  I  N  F  L  D  R  P  Q  I  K  I  V  S  M  V  E  E  H  D  Q  *  Y  R  G  I  I  P  I  K  K  *  T  F  L  K  K  N  K  N  S  Y  S  *  T  Y  Q  F  L  T  L  L  L  H  I  L  I  A  *  Y  L  P  I  L  S  I  T  *  C  R  M  S  K  I  N  K  M  S  L  I  V  Y  L  L  S  S  P  S  F  T  Y  L  N  K  *  E  *  *  S  *  L  F  R  I  C  Y  H  L  V  R  L  N  K  L  I  N  D  L  D  C  Y  L  Y  P  H  I  D  C  M  R  Y  G  R  D  P  H  L  W  T  S  R  D  A  *  H  L  P  L  E  V  I  *  T  L  T  L  I  S  G  P  L  T  L  V  R  L  S  *  V  R  *  V  P  *  R  A  L  I  R  *  V  A  T  P  K  N  S  K  S  Q  K  S  C  *  V  A  H  K  T  </first_frame>
            <second_frame>  P  L  P  M  N  F  K  K  N  Y  V  H  L  Y  V  I  V  Y  V  P  T  C  E  L  N  I  L  N  H  L  L  K  T  *  I  F  *  T  D  L  K  S  K  L  F  L  W  W  R  S  T  I  N  N  I  V  A  S  S  L  *  R  N  K  H  F  *  K  K  I  K  I  P  I  H  K  L  I  N  F  *  L  Y  F  C  T  Y  *  L  L  N  I  C  Q  F  C  L  *  H  S  V  V  C  Q  K  *  I  K  *  A  *  L  F  I  Y  C  H  H  L  A  L  H  I  *  I  N  K  N  N  S  L  N  C  F  V  F  V  I  T  *  *  D  *  I  N  *  *  T  T  L  I  A  T  C  T  P  T  *  I  A  *  D  T  A  G  T  H  T  C  G  P  R  G  M  P  N  T  F  P  S  R  *  F  E  P  L  P  *  S  L  A  L  *  L  *  L  D  L  V  R  L  D  R  C  P  N  A  P  *  F  V  R  W  R  L  Q  K  T  R  N  P  K  R  V  V  R  S  R  T  K  P </second_frame>
            <third_frame>   H  F  P  *  T  S  K  R  I  M  C  I  Y  M  *  L  F  M  C  L  R  V  N  *  I  F  *  I  I  C  *  K  H  K  F  F  R  P  T  S  N  Q  N  C  F  Y  G  G  G  A  R  S  I  I  S  W  H  H  P  Y  K  E  I  N  I  F  K  K  K  *  K  F  L  F  I  N  L  S  I  F  N  F  T  F  A  H  T  N  C  L  I  F  A  N  F  V  Y  N  I  V  S  Y  V  K  N  K  *  N  E  L  N  C  L  F  I  V  I  T  *  L  Y  I  S  K  *  I  R  I  I  V  L  I  V  S  Y  L  L  S  L  S  K  I  K  *  I  N  K  R  P  *  L  L  L  V  P  P  H  R  L  H  E  I  R  P  G  P  T  L  V  D  L  E  G  C  L  T  P  S  P  R  G  N  L  N  P  Y  P  N  L  W  P  F  D  F  S  *  T  *  L  G  *  I  G  A  L  T  R  L  N  S  L  G  G  D  S  K  K  L  E  I  P  K  E  L  L  G  R  A  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066I09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32034" PGL_stop="31386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32034" e_stop="31386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="32034" e_stop="31386" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32034" stop="31386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAAAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  K  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  K  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32033" stop="31386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVAKGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44944" PGL_stop="46399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44944" e_stop="45081"/>
            <exon e_start="45172" e_stop="45205"/>
            <exon e_start="45407" e_stop="45786"/>
            <exon e_start="46301" e_stop="46399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.495"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44944" e_stop="45081" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45082" i_stop="45171" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45172" e_stop="45205" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45206" i_stop="45406" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45407" e_stop="45786" e_length="380"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45787" i_stop="46300" i_length="514"/>
          </intron>
          <exon e_serial="4" e_score="0.495">
            <gDNA_exon_boundary e_start="46301" e_stop="46399" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44944" stop="45081"/>
              <exon start="45172" stop="45205"/>
              <exon start="45407" stop="45786"/>
              <exon start="46301" stop="46399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACTTCTATACTCTCATTTTCACCAAGAAAATCAAGCATGGCCAAGATTGTTTCAGTTCTCCTTTTGGCCCTTCTTGTCATTTCCATGCTTGCTAACACTGTTATGGCTGCAAATGGCAAACACCACCACTATGCT : AAGAAGTATGGACCAGGAAGCTTGAAGCCCTCGC : AATGTCTACCACAATGTACGAGGAGGTGTAGCAAGACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAATGTTGCAACAAGTGTTTGTGTGTTCCACCTGGTACCTATGGAAACAAGGCTGTTTGTCCTTGTTACAATAACTGGAAGACCAAGGAAGGAGGACCTAAATGCCCTTAATTTACTTTCTGTTTTCATCTAATATGTCTACCTAATCTTCTTGTTTTTTCTCCTATTGCACTTTTATCTAACCCAAGTGGTTATATATGTAATATGACCATATTTCCAGAGTTTAAATGGAACAAAAATATCACTCCCACTCTTGCTAGAAAGTTTAATCTTCCTTTGGACCAAACAAATTTCCATCTTTCCTCATTA : AAAAACAAAACGAGAAAAAATCTTTTCCCATTATGTAGCTTACCATCTGTACAATTAGCTTATCGAAACAGAGAGCTGTTTATACTGATTGTACATGAG</gDNA_template>
            <first_frame> F  T  S  I  L  S  F  S  P  R  K  S  S  M  A  K  I  V  S  V  L  L  L  A  L  L  V  I  S  M  L  A  N  T  V  M  A  A  N  G  K  H  H  H  Y  A  :  K  K  Y  G  P  G  S  L  K  P  S   : Q  C  L  P  Q  C  T  R  R  C  S  K  T  Q  Y  H  K  P  C  M  F  F  C  Q  K  C  C  N  K  C  L  C  V  P  P  G  T  Y  G  N  K  A  V  C  P  C  Y  N  N  W  K  T  K  E  G  G  P  K  C  P  *  F  T  F  C  F  H  L  I  C  L  P  N  L  L  V  F  S  P  I  A  L  L  S  N  P  S  G  Y  I  C  N  M  T  I  F  P  E  F  K  W  N  K  N  I  T  P  T  L  A  R  K  F  N  L  P  L  D  Q  T  N  F  H  L  S  S  L  :  K  N  K  T  R  K  N  L  F  P  L  C  S  L  P  S  V  Q  L  A  Y  R  N  R  E  L  F  I  L  I  V  H  E </first_frame>
            <second_frame>  L  L  L  Y  S  H  F  H  Q  E  N  Q  A  W  P  R  L  F  Q  F  S  F  W  P  F  L  S  F  P  C  L  L  T  L  L  W  L  Q  M  A  N  T  T  T  M  L :   R  S  M  D  Q  E  A  *  S  P  R  :  N  V  Y  H  N  V  R  G  G  V  A  R  H  S  T  T  S  H  A  C  S  S  A  K  N  V  A  T  S  V  C  V  F  H  L  V  P  M  E  T  R  L  F  V  L  V  T  I  T  G  R  P  R  K  E  D  L  N  A  L  N  L  L  S  V  F  I  *  Y  V  Y  L  I  F  L  F  F  L  L  L  H  F  Y  L  T  Q  V  V  I  Y  V  I  *  P  Y  F  Q  S  L  N  G  T  K  I  S  L  P  L  L  L  E  S  L  I  F  L  W  T  K  Q  I  S  I  F  P  H  * :   K  T  K  R  E  K  I  F  S  H  Y  V  A  Y  H  L  Y  N  *  L  I  E  T  E  S  C  L  Y  *  L  Y  M   </second_frame>
            <third_frame>   Y  F  Y  T  L  I  F  T  K  K  I  K  H  G  Q  D  C  F  S  S  P  F  G  P  S  C  H  F  H  A  C  *  H  C  Y  G  C  K  W  Q  T  P  P  L  C   : *  E  V  W  T  R  K  L  E  A  L  A :   M  S  T  T  M  Y  E  E  V  *  Q  D  T  V  P  Q  A  M  H  V  L  L  P  K  M  L  Q  Q  V  F  V  C  S  T  W  Y  L  W  K  Q  G  C  L  S  L  L  Q  *  L  E  D  Q  G  R  R  T  *  M  P  L  I  Y  F  L  F  S  S  N  M  S  T  *  S  S  C  F  F  S  Y  C  T  F  I  *  P  K  W  L  Y  M  *  Y  D  H  I  S  R  V  *  M  E  Q  K  Y  H  S  H  S  C  *  K  V  *  S  S  F  G  P  N  K  F  P  S  F  L  I   : K  K  Q  N  E  K  K  S  F  P  I  M  *  L  T  I  C  T  I  S  L  S  K  Q  R  A  V  Y  T  D  C  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44944" stop="45081"/>
                    <exon start="45172" stop="45205"/>
                    <exon start="45407" stop="45588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSILSFSPRKSSMAKIVSVLLLALLVISMLANTVMAANGKHHHYAKKYGPGSLKPSQCLPQCTRRCSKTQYHKPCMFFCQKCCNKCLCVPPGTYGNKAVCPCYNNWKTKEGGPKCP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45589" stop="45786"/>
                    <exon start="46301" stop="46399"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTFCFHLICLPNLLVFSPIALLSNPSGYICNMTIFPEFKWNKNITPTLARKFNLPLDQTNFHLSSLKNKTRKNLFPLCSLPSVQLAYRNRELFILIVHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="50784" PGL_stop="46186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50784" e_stop="50678"/>
            <exon e_start="49810" e_stop="49518"/>
            <exon e_start="49117" e_stop="49046"/>
            <exon e_start="48583" e_stop="48516"/>
            <exon e_start="48159" e_stop="48006"/>
            <exon e_start="47134" e_stop="47051"/>
            <exon e_start="46939" e_stop="46850"/>
            <exon e_start="46565" e_stop="46186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.005" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.157" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50784" e_stop="50678" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.005">
            <gDNA_intron_boundary i_start="50677" i_stop="49811" i_length="867"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49810" e_stop="49518" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.860">
            <gDNA_intron_boundary i_start="49517" i_stop="49118" i_length="400"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49117" e_stop="49046" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.979">
            <gDNA_intron_boundary i_start="49045" i_stop="48584" i_length="462"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48583" e_stop="48516" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.926">
            <gDNA_intron_boundary i_start="48515" i_stop="48160" i_length="356"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48159" e_stop="48006" e_length="154"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48005" i_stop="47135" i_length="871"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47134" e_stop="47051" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.157">
            <gDNA_intron_boundary i_start="47050" i_stop="46940" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46939" e_stop="46850" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.876">
            <gDNA_intron_boundary i_start="46849" i_stop="46566" i_length="284"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46565" e_stop="46186" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50784" stop="50678"/>
              <exon start="49810" stop="49518"/>
              <exon start="49117" stop="49046"/>
              <exon start="48583" stop="48516"/>
              <exon start="48159" stop="48006"/>
              <exon start="47134" stop="47051"/>
              <exon start="46939" stop="46850"/>
              <exon start="46565" stop="46186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAATGTTGCTGCGACTTTTCTTGTCTGAAAAAGAGTAGTATATATTCATTAGCTTCTAAGCTGGTTCTTCACAAAGCTAACCCATCAAGAATTGCATATTCAG : GATAATTTGGTGAACTGTTAATGGAAGAACATTTGGTTTTGCGTGTTGACCATCTTATCACACCCGAATCATTGCACTCTCTGCCACGGCCCGAGCATACAGAATTATCTGGGGGCACATCTGTCACTCAGACAGTTGGTACATCCTCAGGTATTGATGCTCAAGAGAACGAATATCAAAGAGCTGGAGATGAAGAAGAGCCATTACTTCAGACTGTGGAATGTCGGATTTGTCAGGAAGAAGATAGCTTGAAAAATTTGGAGATTCCTTGTGGTTGCAGTGGCAGCTTGAAG : TATGCACACAGAAAATGTGTTCAACAATGGTGTGATGAGAAGGGAGATATAACTTGCGAGATTTGCCATCAG : CTTTATCATCCTGGCTATACTGCTCGGCCCGCGTCTCCTCAATCTGAAGATACATCCATTGACATCAG : AGGTTGGACAGTGGGTGGCACTCAGGTCGACTTTCATGATCCTCGACTTCTTGCAATGGCTGCTGCTGAACGCCGTCTTCTAGAGGCTGACTATGACGAATATTCAGATTCAAATGCTAGTGGAGCTGCATTTTTTCGGTCTGCCGCTTTGATT : CTATTGGCCCTTCTGTTACTGAGGCATGCTCTGATAGTTGGAGATGCTAATGAGGATGAGGATGATGTTTCCACCTTTTTTATG : CTTTTCCTGCTCCGCGCTGCCGGTTTTCTTTTACCTTGTTACATTATAGCTTGGGCTATCGGTATATTGCAGCGTCGCAGGCAAAGACAG : CAGGAGGCAGCAGCAATAGCAGCAGCCGAAGTTGCTTTCCTTGCGCAGGCAGGGCAGCATAGGGGTTTGCATGTCACAATTGCACCTGGACCTGCACCGGCAGCAGAACCTTCGACAACACCAGCAACTCCTCAGGTGTCAATGCCACCGGAACAGGCAGCAACTACTCATGTACAATCAGTATAAACAGCTCTCTGTTTCGATAAGCTAATTGTACAGATGGTAAGCTACATAATGGGAAAAGATTTTTTCTCGTTTTGTTTTTATCATTTACCTACTGTATCTTTACATTGGGAGACGCAAAAGCTTTAAATTTCATATTTTGTTATGTTTGTACTGTTGTACATATCAAAACATTGCAGCCACTAGGTGGCGTGGAA</gDNA_template>
            <first_frame> G  K  M  L  L  R  L  F  L  S  E  K  E  *  Y  I  F  I  S  F  *  A  G  S  S  Q  S  *  P  I  K  N  C  I  F  R :   I  I  W  *  T  V  N  G  R  T  F  G  F  A  C  *  P  S  Y  H  T  R  I  I  A  L  S  A  T  A  R  A  Y  R  I  I  W  G  H  I  C  H  S  D  S  W  Y  I  L  R  Y  *  C  S  R  E  R  I  S  K  S  W  R  *  R  R  A  I  T  S  D  C  G  M  S  D  L  S  G  R  R  *  L  E  K  F  G  D  S  L  W  L  Q  W  Q  L  E   : V  C  T  Q  K  M  C  S  T  M  V  *  *  E  G  R  Y  N  L  R  D  L  P  S   : A  L  S  S  W  L  Y  C  S  A  R  V  S  S  I  *  R  Y  I  H  *  H  Q  :  R  L  D  S  G  W  H  S  G  R  L  S  *  S  S  T  S  C  N  G  C  C  *  T  P  S  S  R  G  *  L  *  R  I  F  R  F  K  C  *  W  S  C  I  F  S  V  C  R  F  D   : S  I  G  P  S  V  T  E  A  C  S  D  S  W  R  C  *  *  G  *  G  *  C  F  H  L  F  Y   : A  F  P  A  P  R  C  R  F  S  F  T  L  L  H  Y  S  L  G  Y  R  Y  I  A  A  S  Q  A  K  T   : A  G  G  S  S  N  S  S  S  R  S  C  F  P  C  A  G  R  A  A  *  G  F  A  C  H  N  C  T  W  T  C  T  G  S  R  T  F  D  N  T  S  N  S  S  G  V  N  A  T  G  T  G  S  N  Y  S  C  T  I  S  I  N  S  S  L  F  R  *  A  N  C  T  D  G  K  L  H  N  G  K  R  F  F  L  V  L  F  L  S  F  T  Y  C  I  F  T  L  G  D  A  K  A  L  N  F  I  F  C  Y  V  C  T  V  V  H  I  K  T  L  Q  P  L  G  G  V  E </first_frame>
            <second_frame>  E  K  C  C  C  D  F  S  C  L  K  K  S  S  I  Y  S  L  A  S  K  L  V  L  H  K  A  N  P  S  R  I  A  Y  S   : G  *  F  G  E  L  L  M  E  E  H  L  V  L  R  V  D  H  L  I  T  P  E  S  L  H  S  L  P  R  P  E  H  T  E  L  S  G  G  T  S  V  T  Q  T  V  G  T  S  S  G  I  D  A  Q  E  N  E  Y  Q  R  A  G  D  E  E  E  P  L  L  Q  T  V  E  C  R  I  C  Q  E  E  D  S  L  K  N  L  E  I  P  C  G  C  S  G  S  L  K  :  Y  A  H  R  K  C  V  Q  Q  W  C  D  E  K  G  D  I  T  C  E  I  C  H  Q  :  L  Y  H  P  G  Y  T  A  R  P  A  S  P  Q  S  E  D  T  S  I  D  I  R :   G  W  T  V  G  G  T  Q  V  D  F  H  D  P  R  L  L  A  M  A  A  A  E  R  R  L  L  E  A  D  Y  D  E  Y  S  D  S  N  A  S  G  A  A  F  F  R  S  A  A  L  I  :  L  L  A  L  L  L  L  R  H  A  L  I  V  G  D  A  N  E  D  E  D  D  V  S  T  F  F  M  :  L  F  L  L  R  A  A  G  F  L  L  P  C  Y  I  I  A  W  A  I  G  I  L  Q  R  R  R  Q  R  Q  :  Q  E  A  A  A  I  A  A  A  E  V  A  F  L  A  Q  A  G  Q  H  R  G  L  H  V  T  I  A  P  G  P  A  P  A  A  E  P  S  T  T  P  A  T  P  Q  V  S  M  P  P  E  Q  A  A  T  T  H  V  Q  S  V  *  T  A  L  C  F  D  K  L  I  V  Q  M  V  S  Y  I  M  G  K  D  F  F  S  F  C  F  Y  H  L  P  T  V  S  L  H  W  E  T  Q  K  L  *  I  S  Y  F  V  M  F  V  L  L  Y  I  S  K  H  C  S  H  *  V  A  W   </second_frame>
            <third_frame>   K  N  V  A  A  T  F  L  V  *  K  R  V  V  Y  I  H  *  L  L  S  W  F  F  T  K  L  T  H  Q  E  L  H  I  Q  :  D  N  L  V  N  C  *  W  K  N  I  W  F  C  V  L  T  I  L  S  H  P  N  H  C  T  L  C  H  G  P  S  I  Q  N  Y  L  G  A  H  L  S  L  R  Q  L  V  H  P  Q  V  L  M  L  K  R  T  N  I  K  E  L  E  M  K  K  S  H  Y  F  R  L  W  N  V  G  F  V  R  K  K  I  A  *  K  I  W  R  F  L  V  V  A  V  A  A  *  S :   M  H  T  E  N  V  F  N  N  G  V  M  R  R  E  I  *  L  A  R  F  A  I  S :   F  I  I  L  A  I  L  L  G  P  R  L  L  N  L  K  I  H  P  L  T  S   : E  V  G  Q  W  V  A  L  R  S  T  F  M  I  L  D  F  L  Q  W  L  L  L  N  A  V  F  *  R  L  T  M  T  N  I  Q  I  Q  M  L  V  E  L  H  F  F  G  L  P  L  *  F :   Y  W  P  F  C  Y  *  G  M  L  *  *  L  E  M  L  M  R  M  R  M  M  F  P  P  F  L  C :   F  S  C  S  A  L  P  V  F  F  Y  L  V  T  L  *  L  G  L  S  V  Y  C  S  V  A  G  K  D  S :   R  R  Q  Q  Q  *  Q  Q  P  K  L  L  S  L  R  R  Q  G  S  I  G  V  C  M  S  Q  L  H  L  D  L  H  R  Q  Q  N  L  R  Q  H  Q  Q  L  L  R  C  Q  C  H  R  N  R  Q  Q  L  L  M  Y  N  Q  Y  K  Q  L  S  V  S  I  S  *  L  Y  R  W  *  A  T  *  W  E  K  I  F  S  R  F  V  F  I  I  Y  L  L  Y  L  Y  I  G  R  R  K  S  F  K  F  H  I  L  L  C  L  Y  C  C  T  Y  Q  N  I  A  A  T  R  W  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49805" stop="49518"/>
                    <exon start="49117" stop="49046"/>
                    <exon start="48583" stop="48516"/>
                    <exon start="48159" stop="48006"/>
                    <exon start="47134" stop="47051"/>
                    <exon start="46939" stop="46850"/>
                    <exon start="46565" stop="46380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGELLMEEHLVLRVDHLITPESLHSLPRPEHTELSGGTSVTQTVGTSSGIDAQENEYQRAGDEEEPLLQTVECRICQEEDSLKNLEIPCGCSGSLKYAHRKCVQQWCDEKGDITCEICHQLYHPGYTARPASPQSEDTSIDIRGWTVGGTQVDFHDPRLLAMAAAERRLLEADYDEYSDSNASGAAFFRSAALILLALLLLRHALIVGDANEDEDDVSTFFMLFLLRAAGFLLPCYIIAWAIGILQRRRQRQQEAAAIAAAEVAFLAQAGQHRGLHVTIAPGPAPAAEPSTTPATPQVSMPPEQAATTHVQSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53589" PGL_stop="55944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53589" e_stop="54071"/>
            <exon e_start="55293" e_stop="55944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53589" e_stop="54071" e_length="483"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="54072" i_stop="55292" i_length="1221"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="55293" e_stop="55944" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53589" stop="54071"/>
              <exon start="55293" stop="55944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCAGTGAGGGTTTAAACTTACATCAAAACCCTAGCGTTCCTTTTACCCCAATTCTAACCGCTTTACTTGCTCCCTGAACTTACGCAGCATAGCCATGGCAGAAACTGAACCTGAAGTCGCCGCCGCCGTGCCCGCCGTTGAAGCCGTGGTAGAGGCCGAGAAAGAGGACACTTCGGCTCAGGACATGGATGTCGAAGCTCAAGCCGCCGATGATACGGAAGAGAACGGCGGGTCGAAGCGTCCAAGGGAGGAGGAAAACGAGGTGGAGAAGGAAGACGCCACAAAGAAGCTGAAGGTCGATAAGTCTGTGGAAGAAGAACGATTCGAGAATTTAGATGGAAGCAAAACGGTGGATGAAGAAAAGAAAGATGTGTCAGGTCCGATTAGCGTGGGCCCTAAGAACTTCGGATCGTCTGTGGAGGTGTTCAATTACTTTTATAAGCTTCTCCATTCTTGGTCTCCCAACCTCAACCTCAACAAG : TATGAGTACATTGTTTTGCTTGACTTGCTAAAGAAGGGTCATTTAGAGCCAGATAGAAAGATTGGTACAGGAGTCCGTGCATTCCAAATCCGGTTTCATCCTCAATATAAAAGTCGTTGCTTCTTTATCATTAGGGAGGATGACTCTGTGGATGATTTTAGCTTCAGGAAATGTATTGATCACATTAGTCCTCTCCCAGAGAACATGCAAGTAAAACACGAGGCAAACAGAGACTTGGCACGTGGTGGAAAAGGAGGTGGGCGTGGCCGTGGAAGAGGAGGGAAGCCAAGATACTGAAGGCAGCTGCATGTTCTGTCAATTGTTATGTAAGCCGTCACATGCTGCTGCCTGCTTAGTCCACATTTTGTTCAATACCCCTTTCAATCCTGCAGTTTATGACATAATATGCGTTATGACTACAAGGATGGCATCTGCTGGTTATGATGTTACCGTAATATGCGTTAAATTTATGTAATGTATGAATACATCAGACGAAATTATCATATGAAGAACGTATTATTCAATTTTAGCATATACTGTAGGTGGTGTTAACTAAACATATTGCTCTGATGCATTGTAGGCTCCCTCCCAATTGTGTTCCAATGATATGCCGTTTATGTTTTTTTGAAAGGAAAAAATTATCCTTTTAGCT</gDNA_template>
            <first_frame> S  Q  *  G  F  K  L  T  S  K  P  *  R  S  F  Y  P  N  S  N  R  F  T  C  S  L  N  L  R  S  I  A  M  A  E  T  E  P  E  V  A  A  A  V  P  A  V  E  A  V  V  E  A  E  K  E  D  T  S  A  Q  D  M  D  V  E  A  Q  A  A  D  D  T  E  E  N  G  G  S  K  R  P  R  E  E  E  N  E  V  E  K  E  D  A  T  K  K  L  K  V  D  K  S  V  E  E  E  R  F  E  N  L  D  G  S  K  T  V  D  E  E  K  K  D  V  S  G  P  I  S  V  G  P  K  N  F  G  S  S  V  E  V  F  N  Y  F  Y  K  L  L  H  S  W  S  P  N  L  N  L  N  K  :  Y  E  Y  I  V  L  L  D  L  L  K  K  G  H  L  E  P  D  R  K  I  G  T  G  V  R  A  F  Q  I  R  F  H  P  Q  Y  K  S  R  C  F  F  I  I  R  E  D  D  S  V  D  D  F  S  F  R  K  C  I  D  H  I  S  P  L  P  E  N  M  Q  V  K  H  E  A  N  R  D  L  A  R  G  G  K  G  G  G  R  G  R  G  R  G  G  K  P  R  Y  *  R  Q  L  H  V  L  S  I  V  M  *  A  V  T  C  C  C  L  L  S  P  H  F  V  Q  Y  P  F  Q  S  C  S  L  *  H  N  M  R  Y  D  Y  K  D  G  I  C  W  L  *  C  Y  R  N  M  R  *  I  Y  V  M  Y  E  Y  I  R  R  N  Y  H  M  K  N  V  L  F  N  F  S  I  Y  C  R  W  C  *  L  N  I  L  L  *  C  I  V  G  S  L  P  I  V  F  Q  *  Y  A  V  Y  V  F  L  K  G  K  N  Y  P  F  S  </first_frame>
            <second_frame>  L  S  E  G  L  N  L  H  Q  N  P  S  V  P  F  T  P  I  L  T  A  L  L  A  P  *  T  Y  A  A  *  P  W  Q  K  L  N  L  K  S  P  P  P  C  P  P  L  K  P  W  *  R  P  R  K  R  T  L  R  L  R  T  W  M  S  K  L  K  P  P  M  I  R  K  R  T  A  G  R  S  V  Q  G  R  R  K  T  R  W  R  R  K  T  P  Q  R  S  *  R  S  I  S  L  W  K  K  N  D  S  R  I  *  M  E  A  K  R  W  M  K  K  R  K  M  C  Q  V  R  L  A  W  A  L  R  T  S  D  R  L  W  R  C  S  I  T  F  I  S  F  S  I  L  G  L  P  T  S  T  S  T  S :   M  S  T  L  F  C  L  T  C  *  R  R  V  I  *  S  Q  I  E  R  L  V  Q  E  S  V  H  S  K  S  G  F  I  L  N  I  K  V  V  A  S  L  S  L  G  R  M  T  L  W  M  I  L  A  S  G  N  V  L  I  T  L  V  L  S  Q  R  T  C  K  *  N  T  R  Q  T  E  T  W  H  V  V  E  K  E  V  G  V  A  V  E  E  E  G  S  Q  D  T  E  G  S  C  M  F  C  Q  L  L  C  K  P  S  H  A  A  A  C  L  V  H  I  L  F  N  T  P  F  N  P  A  V  Y  D  I  I  C  V  M  T  T  R  M  A  S  A  G  Y  D  V  T  V  I  C  V  K  F  M  *  C  M  N  T  S  D  E  I  I  I  *  R  T  Y  Y  S  I  L  A  Y  T  V  G  G  V  N  *  T  Y  C  S  D  A  L  *  A  P  S  Q  L  C  S  N  D  M  P  F  M  F  F  *  K  E  K  I  I  L  L  A </second_frame>
            <third_frame>   S  V  R  V  *  T  Y  I  K  T  L  A  F  L  L  P  Q  F  *  P  L  Y  L  L  P  E  L  T  Q  H  S  H  G  R  N  *  T  *  S  R  R  R  R  A  R  R  *  S  R  G  R  G  R  E  R  G  H  F  G  S  G  H  G  C  R  S  S  S  R  R  *  Y  G  R  E  R  R  V  E  A  S  K  G  G  G  K  R  G  G  E  G  R  R  H  K  E  A  E  G  R  *  V  C  G  R  R  T  I  R  E  F  R  W  K  Q  N  G  G  *  R  K  E  R  C  V  R  S  D  *  R  G  P  *  E  L  R  I  V  C  G  G  V  Q  L  L  L  *  A  S  P  F  L  V  S  Q  P  Q  P  Q  Q   : V  *  V  H  C  F  A  *  L  A  K  E  G  S  F  R  A  R  *  K  D  W  Y  R  S  P  C  I  P  N  P  V  S  S  S  I  *  K  S  L  L  L  Y  H  *  G  G  *  L  C  G  *  F  *  L  Q  E  M  Y  *  S  H  *  S  S  P  R  E  H  A  S  K  T  R  G  K  Q  R  L  G  T  W  W  K  R  R  W  A  W  P  W  K  R  R  E  A  K  I  L  K  A  A  A  C  S  V  N  C  Y  V  S  R  H  M  L  L  P  A  *  S  T  F  C  S  I  P  L  S  I  L  Q  F  M  T  *  Y  A  L  *  L  Q  G  W  H  L  L  V  M  M  L  P  *  Y  A  L  N  L  C  N  V  *  I  H  Q  T  K  L  S  Y  E  E  R  I  I  Q  F  *  H  I  L  *  V  V  L  T  K  H  I  A  L  M  H  C  R  L  P  P  N  C  V  P  M  I  C  R  L  C  F  F  E  R  K  K  L  S  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53625" stop="54071"/>
                    <exon start="55293" stop="55589"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFYPNSNRFTCSLNLRSIAMAETEPEVAAAVPAVEAVVEAEKEDTSAQDMDVEAQAADDTEENGGSKRPREEENEVEKEDATKKLKVDKSVEEERFENLDGSKTVDEEKKDVSGPISVGPKNFGSSVEVFNYFYKLLHSWSPNLNLNKYEYIVLLDLLKKGHLEPDRKIGTGVRAFQIRFHPQYKSRCFFIIREDDSVDDFSFRKCIDHISPLPENMQVKHEANRDLARGGKGGGRGRGRGGKPRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="60262" PGL_stop="62993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60262" e_stop="60652"/>
            <exon e_start="61264" e_stop="62993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="60262" e_stop="60652" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60653" i_stop="61263" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61264" e_stop="62993" e_length="1730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60262" stop="60652"/>
              <exon start="61264" stop="62993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320037" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGCCAACAGGGTTTGCTTCTAAAACCGTATCTCTCGTAGAAAAAAAAATCCACTTTTGAAACGTCGTCAACTCGCCGGCGGCGACTTCGTCGGATACTAAACGAGAATCCCCAGAATAATAGAGTGTTTCTACAGTTTCCCTTTTCGTTTTTTTGAATACCCTTTTCGTTTTAGTCTGGAAAATGACTTGTGATTCAGAGATCAAGCTGTTTGGCAAGATACTCCCGGTGGTCGTCTCCGGCGTTGGTAGGGGTTTGTCTGGTAGTGATGGTGTTATATATGATGGAAATAGAAATGGGTCTGATCTTGATCGATGTTTAGAGGGAAGTAAAGCAAGCAGTGTAGAGAAGGATGAAGGAAGTGAGTATGAAAAGCAAGAAGCTGAAAAG : GATAATATAACTGGAGAGCTCAGTGAAGCTAAATCTGAGGAGGGAGACCAAAATCAGATGATAGAAGAATCAGAAAATCCTAAGACTCCATCAGAATCAGAGAGCAGTCCTAAATCTTCAACTGAGGAAGACCCTCAAGCAGTAAAATCATCCAAGACTGAGAATGAACCGACTAATGTGACAAATTCCGAGCAGAACAATCTGAAGAAGCCAGACAAAATCCTCCCATGCCCTCGTTGCAATAGTTTGGATACAAAATTCTGTTACTATAATAACAACAATGTCAACCAGCCTCGTCATTTCTGCAGGAGCTGCCAGAGGTATTGGACTGCCGGTGGTACCATGAGGAATCTCCCTGTGGGAGCTGGTCGTCGCAAGAACAAGAATCTTGCATCTCAATATCGTAATATAAGTATCCCTGAAGGATTACTAGCAGCAGGAATTGAATCTCCAAATGGGTTAATTCATCATCCATTATTCAAACCAAATGGCACTATTCTATCGTTTGGTCCCGACTTACCCCTGTGTGAACCTATGGCTTCTGCATTAAATCAAGCAGAGAAAAGGGTATCAACTGGTATTCAAAACGGTTCTCATAAATCAGAAGTCAAGAATTCTTCTTGCAAAGGTGGAGATTCTGGGGATGAGTGCTGTAGAGGGATTAACATCCCGACTCCAAATATGATGGTGGAAGAAGGTAAAGGAGAGCCCCACAAGGCTGTTATGCATAGTATAAATGGCATCCCGTCTCCTGTTCCGTGCCTCCATGGAGTACCTTGGCCTTTTCCATGGAATGCTGCAGTTCCTGTGTCGGCTATTTGCCCCATTCCCTTCCCTATGCCATTCTTCCCTACACCTTATTGGAATTGCAGTGTGCCTCCTTGGAGTAATCCTTGGTTGAGTCCACCTCTGCGAGCTGCAAACGAGAAAACATCAGGTTCTGATCCTACTTCTTCTTTAGGGAAACATTCAAGAGAGGGGGATTTGCTTAAGCCAAGCAATCCTGGGGGCAAAGAACAATCAGAACAAAAGTATTCAGAGGGGTCTATTTTGGTCCCAAAAACATTGCGGATTGATGATCCTGATGAAGCTGCTAAGAGTTCTATATGGTCAACACTTGGGATTAAATATGATTCTACTAACAGGGGAGAGTTTTTCAAGGCCTTGCAACCAAAAAGCAATGACAAGCACAACAAAGCCAATACATTTCCAGTATTGCATACTAACCCTGCAGCCTTATCTAGATCTATCACCTTCCAACAAGGTGCCTAAAGATGATCCTATGAATCTGCGAAGGATGGTCTTCACTTGAAATTAAGTATGACTGTTGTCTGATGAGGGCTTTTTGGGGCCTAGCAACCAAAAAGTAACAAAGCTAAGATAATGCTTTTTTCTCCCATTGAACTCCAGCGGGAAACTTCATGGATTTCCTGCCTGATGGGGACATTTACAGTGCGCAGATCACTTACAGAGCTGCCAGGCTAATATCTCTCAAGTGATCCAATGAAACTGGGGAATGACATGGGAAGCTATTGTAGAAACCTATTGTTTATAGTTTTCTTGGTAACAATAAGAGCAAGTGGCTGGCTTGGTTTTTACTTTTGTGTGTTTTCTAATGTACATACCTTTTTACAGCTAACACTAGAGTGAGGAAGACAGTTGTTTAGATCCTCATCCAACAGTTGTTGTAACATATTTTAAATTAATGTCAAAGTTAGTTTGGAGAGCCA</gDNA_template>
            <first_frame> N  A  N  R  V  C  F  *  N  R  I  S  R  R  K  K  N  P  L  L  K  R  R  Q  L  A  G  G  D  F  V  G  Y  *  T  R  I  P  R  I  I  E  C  F  Y  S  F  P  F  R  F  F  E  Y  P  F  R  F  S  L  E  N  D  L  *  F  R  D  Q  A  V  W  Q  D  T  P  G  G  R  L  R  R  W  *  G  F  V  W  *  *  W  C  Y  I  *  W  K  *  K  W  V  *  S  *  S  M  F  R  G  K  *  S  K  Q  C  R  E  G  *  R  K  *  V  *  K  A  R  S  *  K   : G  *  Y  N  W  R  A  Q  *  S  *  I  *  G  G  R  P  K  S  D  D  R  R  I  R  K  S  *  D  S  I  R  I  R  E  Q  S  *  I  F  N  *  G  R  P  S  S  S  K  I  I  Q  D  *  E  *  T  D  *  C  D  K  F  R  A  E  Q  S  E  E  A  R  Q  N  P  P  M  P  S  L  Q  *  F  G  Y  K  I  L  L  L  *  *  Q  Q  C  Q  P  A  S  S  F  L  Q  E  L  P  E  V  L  D  C  R  W  Y  H  E  E  S  P  C  G  S  W  S  S  Q  E  Q  E  S  C  I  S  I  S  *  Y  K  Y  P  *  R  I  T  S  S  R  N  *  I  S  K  W  V  N  S  S  S  I  I  Q  T  K  W  H  Y  S  I  V  W  S  R  L  T  P  V  *  T  Y  G  F  C  I  K  S  S  R  E  K  G  I  N  W  Y  S  K  R  F  S  *  I  R  S  Q  E  F  F  L  Q  R  W  R  F  W  G  *  V  L  *  R  D  *  H  P  D  S  K  Y  D  G  G  R  R  *  R  R  A  P  Q  G  C  Y  A  *  Y  K  W  H  P  V  S  C  S  V  P  P  W  S  T  L  A  F  S  M  E  C  C  S  S  C  V  G  Y  L  P  H  S  L  P  Y  A  I  L  P  Y  T  L  L  E  L  Q  C  A  S  L  E  *  S  L  V  E  S  T  S  A  S  C  K  R  E  N  I  R  F  *  S  Y  F  F  F  R  E  T  F  K  R  G  G  F  A  *  A  K  Q  S  W  G  Q  R  T  I  R  T  K  V  F  R  G  V  Y  F  G  P  K  N  I  A  D  *  *  S  *  *  S  C  *  E  F  Y  M  V  N  T  W  D  *  I  *  F  Y  *  Q  G  R  V  F  Q  G  L  A  T  K  K  Q  *  Q  A  Q  Q  S  Q  Y  I  S  S  I  A  Y  *  P  C  S  L  I  *  I  Y  H  L  P  T  R  C  L  K  M  I  L  *  I  C  E  G  W  S  S  L  E  I  K  Y  D  C  C  L  M  R  A  F  W  G  L  A  T  K  K  *  Q  S  *  D  N  A  F  F  S  H  *  T  P  A  G  N  F  M  D  F  L  P  D  G  D  I  Y  S  A  Q  I  T  Y  R  A  A  R  L  I  S  L  K  *  S  N  E  T  G  E  *  H  G  K  L  L  *  K  P  I  V  Y  S  F  L  G  N  N  K  S  K  W  L  A  W  F  L  L  L  C  V  F  *  C  T  Y  L  F  T  A  N  T  R  V  R  K  T  V  V  *  I  L  I  Q  Q  L  L  *  H  I  L  N  *  C  Q  S  *  F  G  E  P </first_frame>
            <second_frame>  T  P  T  G  F  A  S  K  T  V  S  L  V  E  K  K  I  H  F  *  N  V  V  N  S  P  A  A  T  S  S  D  T  K  R  E  S  P  E  *  *  S  V  S  T  V  S  L  F  V  F  L  N  T  L  F  V  L  V  W  K  M  T  C  D  S  E  I  K  L  F  G  K  I  L  P  V  V  V  S  G  V  G  R  G  L  S  G  S  D  G  V  I  Y  D  G  N  R  N  G  S  D  L  D  R  C  L  E  G  S  K  A  S  S  V  E  K  D  E  G  S  E  Y  E  K  Q  E  A  E  K  :  D  N  I  T  G  E  L  S  E  A  K  S  E  E  G  D  Q  N  Q  M  I  E  E  S  E  N  P  K  T  P  S  E  S  E  S  S  P  K  S  S  T  E  E  D  P  Q  A  V  K  S  S  K  T  E  N  E  P  T  N  V  T  N  S  E  Q  N  N  L  K  K  P  D  K  I  L  P  C  P  R  C  N  S  L  D  T  K  F  C  Y  Y  N  N  N  N  V  N  Q  P  R  H  F  C  R  S  C  Q  R  Y  W  T  A  G  G  T  M  R  N  L  P  V  G  A  G  R  R  K  N  K  N  L  A  S  Q  Y  R  N  I  S  I  P  E  G  L  L  A  A  G  I  E  S  P  N  G  L  I  H  H  P  L  F  K  P  N  G  T  I  L  S  F  G  P  D  L  P  L  C  E  P  M  A  S  A  L  N  Q  A  E  K  R  V  S  T  G  I  Q  N  G  S  H  K  S  E  V  K  N  S  S  C  K  G  G  D  S  G  D  E  C  C  R  G  I  N  I  P  T  P  N  M  M  V  E  E  G  K  G  E  P  H  K  A  V  M  H  S  I  N  G  I  P  S  P  V  P  C  L  H  G  V  P  W  P  F  P  W  N  A  A  V  P  V  S  A  I  C  P  I  P  F  P  M  P  F  F  P  T  P  Y  W  N  C  S  V  P  P  W  S  N  P  W  L  S  P  P  L  R  A  A  N  E  K  T  S  G  S  D  P  T  S  S  L  G  K  H  S  R  E  G  D  L  L  K  P  S  N  P  G  G  K  E  Q  S  E  Q  K  Y  S  E  G  S  I  L  V  P  K  T  L  R  I  D  D  P  D  E  A  A  K  S  S  I  W  S  T  L  G  I  K  Y  D  S  T  N  R  G  E  F  F  K  A  L  Q  P  K  S  N  D  K  H  N  K  A  N  T  F  P  V  L  H  T  N  P  A  A  L  S  R  S  I  T  F  Q  Q  G  A  *  R  *  S  Y  E  S  A  K  D  G  L  H  L  K  L  S  M  T  V  V  *  *  G  L  F  G  A  *  Q  P  K  S  N  K  A  K  I  M  L  F  S  P  I  E  L  Q  R  E  T  S  W  I  S  C  L  M  G  T  F  T  V  R  R  S  L  T  E  L  P  G  *  Y  L  S  S  D  P  M  K  L  G  N  D  M  G  S  Y  C  R  N  L  L  F  I  V  F  L  V  T  I  R  A  S  G  W  L  G  F  Y  F  C  V  F  S  N  V  H  T  F  L  Q  L  T  L  E  *  G  R  Q  L  F  R  S  S  S  N  S  C  C  N  I  F  *  I  N  V  K  V  S  L  E  S   </second_frame>
            <third_frame>   R  Q  Q  G  L  L  L  K  P  Y  L  S  *  K  K  K  S  T  F  E  T  S  S  T  R  R  R  R  L  R  R  I  L  N  E  N  P  Q  N  N  R  V  F  L  Q  F  P  F  S  F  F  *  I  P  F  S  F  *  S  G  K  *  L  V  I  Q  R  S  S  C  L  A  R  Y  S  R  W  S  S  P  A  L  V  G  V  C  L  V  V  M  V  L  Y  M  M  E  I  E  M  G  L  I  L  I  D  V  *  R  E  V  K  Q  A  V  *  R  R  M  K  E  V  S  M  K  S  K  K  L  K  R :   I  I  *  L  E  S  S  V  K  L  N  L  R  R  E  T  K  I  R  *  *  K  N  Q  K  I  L  R  L  H  Q  N  Q  R  A  V  L  N  L  Q  L  R  K  T  L  K  Q  *  N  H  P  R  L  R  M  N  R  L  M  *  Q  I  P  S  R  T  I  *  R  S  Q  T  K  S  S  H  A  L  V  A  I  V  W  I  Q  N  S  V  T  I  I  T  T  M  S  T  S  L  V  I  S  A  G  A  A  R  G  I  G  L  P  V  V  P  *  G  I  S  L  W  E  L  V  V  A  R  T  R  I  L  H  L  N  I  V  I  *  V  S  L  K  D  Y  *  Q  Q  E  L  N  L  Q  M  G  *  F  I  I  H  Y  S  N  Q  M  A  L  F  Y  R  L  V  P  T  Y  P  C  V  N  L  W  L  L  H  *  I  K  Q  R  K  G  Y  Q  L  V  F  K  T  V  L  I  N  Q  K  S  R  I  L  L  A  K  V  E  I  L  G  M  S  A  V  E  G  L  T  S  R  L  Q  I  *  W  W  K  K  V  K  E  S  P  T  R  L  L  C  I  V  *  M  A  S  R  L  L  F  R  A  S  M  E  Y  L  G  L  F  H  G  M  L  Q  F  L  C  R  L  F  A  P  F  P  S  L  C  H  S  S  L  H  L  I  G  I  A  V  C  L  L  G  V  I  L  G  *  V  H  L  C  E  L  Q  T  R  K  H  Q  V  L  I  L  L  L  L  *  G  N  I  Q  E  R  G  I  C  L  S  Q  A  I  L  G  A  K  N  N  Q  N  K  S  I  Q  R  G  L  F  W  S  Q  K  H  C  G  L  M  I  L  M  K  L  L  R  V  L  Y  G  Q  H  L  G  L  N  M  I  L  L  T  G  E  S  F  S  R  P  C  N  Q  K  A  M  T  S  T  T  K  P  I  H  F  Q  Y  C  I  L  T  L  Q  P  Y  L  D  L  S  P  S  N  K  V  P  K  D  D  P  M  N  L  R  R  M  V  F  T  *  N  *  V  *  L  L  S  D  E  G  F  L  G  P  S  N  Q  K  V  T  K  L  R  *  C  F  F  L  P  L  N  S  S  G  K  L  H  G  F  P  A  *  W  G  H  L  Q  C  A  D  H  L  Q  S  C  Q  A  N  I  S  Q  V  I  Q  *  N  W  G  M  T  W  E  A  I  V  E  T  Y  C  L  *  F  S  W  *  Q  *  E  Q  V  A  G  L  V  F  T  F  V  C  F  L  M  Y  I  P  F  Y  S  *  H  *  S  E  E  D  S  C  L  D  P  H  P  T  V  V  V  T  Y  F  K  L  M  S  K  L  V  W  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60386" stop="60652"/>
                    <exon start="61264" stop="62535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1536</number_coding_nucleotides>
                  <number_encoded_amino_acids>512</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSTVSLFVFLNTLFVLVWKMTCDSEIKLFGKILPVVVSGVGRGLSGSDGVIYDGNRNGSDLDRCLEGSKASSVEKDEGSEYEKQEAEKDNITGELSEAKSEEGDQNQMIEESENPKTPSESESSPKSSTEEDPQAVKSSKTENEPTNVTNSEQNNLKKPDKILPCPRCNSLDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNLASQYRNISIPEGLLAAGIESPNGLIHHPLFKPNGTILSFGPDLPLCEPMASALNQAEKRVSTGIQNGSHKSEVKNSSCKGGDSGDECCRGINIPTPNMMVEEGKGEPHKAVMHSINGIPSPVPCLHGVPWPFPWNAAVPVSAICPIPFPMPFFPTPYWNCSVPPWSNPWLSPPLRAANEKTSGSDPTSSLGKHSREGDLLKPSNPGGKEQSEQKYSEGSILVPKTLRIDDPDEAAKSSIWSTLGIKYDSTNRGEFFKALQPKSNDKHNKANTFPVLHTNPAALSRSITFQQGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69515" PGL_stop="68332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69515" e_stop="69284"/>
            <exon e_start="69177" e_stop="68762"/>
            <exon e_start="68672" e_stop="68332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69515" e_stop="69284" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69283" i_stop="69178" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69177" e_stop="68762" e_length="416"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68761" i_stop="68673" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="68672" e_stop="68332" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69515" stop="69284"/>
              <exon start="69177" stop="68762"/>
              <exon start="68672" stop="68332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTATATTCATAACATAAGACTATAAAATGGCCACTGTAACAACGCAAGCCTCCGCCGCGGTCTTCCCTCCATCCGCCACTAAGACAAGGTTCCTCAACGGATCATCCGGTAAACTAAACAGAGATTTCTCTTTTAAATCATCAACGTTGTCTTACAATTCATTCAAAGTTGAAGCAAAAAAAGGTGAATGGCTTCCAGGCTTAACCTCTCCTACTTACCTTAATGGAAG : TCTTGCGGGTGACAATGGTTTTGATCCATTGGGACTCGCGGAGGATCCGGAGAACTTGAGATGGTTTGTTCAGGCTGAGCTAGTGAACGGTCGATGGGCTATGTTGGGTGTTGCAGGGATGTTACTACCTGAGGTTTTCACTAGCATTGGCCTTCTTAACGTACCAAAATGGTACGATGCTGGAAAATCAGACTACTTTGCATCATCGTCAACATTATTTGTGATCGAGTTCATCTTGTTTCACTACGTTGAAATTCGACGTTGGCAAGACATTAAGAACCCTGGAAGTGTGAACCAAGATCCTATTTTCAAGAGCTACAGTTTGCCTCCTAATGAAGTTGGTTATCCAGGTGGCATTTTCAACCCACTCAACTTTGCACCCACATTGGAGGCAAAGGAAAAGGAAATTGCTAATG : GGAGATTGGCAATGTTAGCATTTTTGGGATTTATAGTGCAACACAATGTGACAGGAAAGGGACCATTTGACAACTTGTTGCAGCACATTTCAGACCCATGGCACAATACCATTATCCAAACATTTTCCAACTAATATGTAATCATGAGTTAGTAATTTTTTTTTATGAAGAAAAAGAAAAACAGAGAGATTTATTGTAAACAATGGAACTCTACTGTACATAGCAACTAAAATTGTATGTCACATTCATTTATATAGCACTACTACTATCATATTTCTTGAAATTTGGCAAGTAGTTCTATTAATTAGCATTGAAAAGAGTAATCATATATCACTATCATC</gDNA_template>
            <first_frame> Q  L  Y  S  *  H  K  T  I  K  W  P  L  *  Q  R  K  P  P  P  R  S  S  L  H  P  P  L  R  Q  G  S  S  T  D  H  P  V  N  *  T  E  I  S  L  L  N  H  Q  R  C  L  T  I  H  S  K  L  K  Q  K  K  V  N  G  F  Q  A  *  P  L  L  L  T  L  M  E   : V  L  R  V  T  M  V  L  I  H  W  D  S  R  R  I  R  R  T  *  D  G  L  F  R  L  S  *  *  T  V  D  G  L  C  W  V  L  Q  G  C  Y  Y  L  R  F  S  L  A  L  A  F  L  T  Y  Q  N  G  T  M  L  E  N  Q  T  T  L  H  H  R  Q  H  Y  L  *  S  S  S  S  C  F  T  T  L  K  F  D  V  G  K  T  L  R  T  L  E  V  *  T  K  I  L  F  S  R  A  T  V  C  L  L  M  K  L  V  I  Q  V  A  F  S  T  H  S  T  L  H  P  H  W  R  Q  R  K  R  K  L  L  M  :  G  D  W  Q  C  *  H  F  W  D  L  *  C  N  T  M  *  Q  E  R  D  H  L  T  T  C  C  S  T  F  Q  T  H  G  T  I  P  L  S  K  H  F  P  T  N  M  *  S  *  V  S  N  F  F  L  *  R  K  R  K  T  E  R  F  I  V  N  N  G  T  L  L  Y  I  A  T  K  I  V  C  H  I  H  L  Y  S  T  T  T  I  I  F  L  E  I  W  Q  V  V  L  L  I  S  I  E  K  S  N  H  I  S  L  S   </first_frame>
            <second_frame>  N  Y  I  H  N  I  R  L  *  N  G  H  C  N  N  A  S  L  R  R  G  L  P  S  I  R  H  *  D  K  V  P  Q  R  I  I  R  *  T  K  Q  R  F  L  F  *  I  I  N  V  V  L  Q  F  I  Q  S  *  S  K  K  R  *  M  A  S  R  L  N  L  S  Y  L  P  *  W  K  :  S  C  G  *  Q  W  F  *  S  I  G  T  R  G  G  S  G  E  L  E  M  V  C  S  G  *  A  S  E  R  S  M  G  Y  V  G  C  C  R  D  V  T  T  *  G  F  H  *  H  W  P  S  *  R  T  K  M  V  R  C  W  K  I  R  L  L  C  I  I  V  N  I  I  C  D  R  V  H  L  V  S  L  R  *  N  S  T  L  A  R  H  *  E  P  W  K  C  E  P  R  S  Y  F  Q  E  L  Q  F  A  S  *  *  S  W  L  S  R  W  H  F  Q  P  T  Q  L  C  T  H  I  G  G  K  G  K  G  N  C  *  W :   E  I  G  N  V  S  I  F  G  I  Y  S  A  T  Q  C  D  R  K  G  T  I  *  Q  L  V  A  A  H  F  R  P  M  A  Q  Y  H  Y  P  N  I  F  Q  L  I  C  N  H  E  L  V  I  F  F  Y  E  E  K  E  K  Q  R  D  L  L  *  T  M  E  L  Y  C  T  *  Q  L  K  L  Y  V  T  F  I  Y  I  A  L  L  L  S  Y  F  L  K  F  G  K  *  F  Y  *  L  A  L  K  R  V  I  I  Y  H  Y  H  </second_frame>
            <third_frame>   I  I  F  I  T  *  D  Y  K  M  A  T  V  T  T  Q  A  S  A  A  V  F  P  P  S  A  T  K  T  R  F  L  N  G  S  S  G  K  L  N  R  D  F  S  F  K  S  S  T  L  S  Y  N  S  F  K  V  E  A  K  K  G  E  W  L  P  G  L  T  S  P  T  Y  L  N  G  S :   L  A  G  D  N  G  F  D  P  L  G  L  A  E  D  P  E  N  L  R  W  F  V  Q  A  E  L  V  N  G  R  W  A  M  L  G  V  A  G  M  L  L  P  E  V  F  T  S  I  G  L  L  N  V  P  K  W  Y  D  A  G  K  S  D  Y  F  A  S  S  S  T  L  F  V  I  E  F  I  L  F  H  Y  V  E  I  R  R  W  Q  D  I  K  N  P  G  S  V  N  Q  D  P  I  F  K  S  Y  S  L  P  P  N  E  V  G  Y  P  G  G  I  F  N  P  L  N  F  A  P  T  L  E  A  K  E  K  E  I  A  N   : G  R  L  A  M  L  A  F  L  G  F  I  V  Q  H  N  V  T  G  K  G  P  F  D  N  L  L  Q  H  I  S  D  P  W  H  N  T  I  I  Q  T  F  S  N  *  Y  V  I  M  S  *  *  F  F  F  M  K  K  K  K  N  R  E  I  Y  C  K  Q  W  N  S  T  V  H  S  N  *  N  C  M  S  H  S  F  I  *  H  Y  Y  Y  H  I  S  *  N  L  A  S  S  S  I  N  *  H  *  K  E  *  S  Y  I  T  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69495" stop="69284"/>
                    <exon start="69177" stop="68762"/>
                    <exon start="68672" stop="68539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYKMATVTTQASAAVFPPSATKTRFLNGSSGKLNRDFSFKSSTLSYNSFKVEAKKGEWLPGLTSPTYLNGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGLLNVPKWYDAGKSDYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTFSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69454" e_stop="68867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="69454" e_stop="68867" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69454" stop="68867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTTCCCTCCATCCGCCACTAAGACAAGGTTCCTCAACGGATCATCCGGTAAACTAAACAGAGATTTCTCTTTTAAATCATCAACGTTGTCTTACAATTCATTCAAAGTTGAAGCAAAAAAAGGTGAATGGCTTCCAGGCTTAACCTCTCCTACTTACCTTAATGGAAGGTAATGTATGTACATTTCAATACAAAATCATGATAACAAATGTGTCATTTGTCTTTGCTTCATACAGACTACTAAACAACTTGTAATATATAATGGTTTGTTGTAGTCTTGCGGGTGACAATGGTTTTGATCCATTGGGACTCGCGGAGGATCCGGAGAACTTGAGATGGTTTGTTCAGGCTGAGCTAGTGAACGGTCGATGGGCTATGTTGGGTGTTGCAGGGATGTTACTACCTGAGGTTTTCACTAGCATTGGCCTTCTTAACGTACCAAAATGGTACGATGCTGGAAAATCAGACTACTTTGCATCATCGTCAACATTATTTGTGATCGAGTTCATCTTGTTTCACTACGTTGAAATTCGACGTTGGCAAGACATTAAGAACCCTGGAAGTGTGAACCAAGATCCTATTTTCA</gDNA_template>
            <first_frame> G  L  P  S  I  R  H  *  D  K  V  P  Q  R  I  I  R  *  T  K  Q  R  F  L  F  *  I  I  N  V  V  L  Q  F  I  Q  S  *  S  K  K  R  *  M  A  S  R  L  N  L  S  Y  L  P  *  W  K  V  M  Y  V  H  F  N  T  K  S  *  *  Q  M  C  H  L  S  L  L  H  T  D  Y  *  T  T  C  N  I  *  W  F  V  V  V  L  R  V  T  M  V  L  I  H  W  D  S  R  R  I  R  R  T  *  D  G  L  F  R  L  S  *  *  T  V  D  G  L  C  W  V  L  Q  G  C  Y  Y  L  R  F  S  L  A  L  A  F  L  T  Y  Q  N  G  T  M  L  E  N  Q  T  T  L  H  H  R  Q  H  Y  L  *  S  S  S  S  C  F  T  T  L  K  F  D  V  G  K  T  L  R  T  L  E  V  *  T  K  I  L  F  S </first_frame>
            <second_frame>  V  F  P  P  S  A  T  K  T  R  F  L  N  G  S  S  G  K  L  N  R  D  F  S  F  K  S  S  T  L  S  Y  N  S  F  K  V  E  A  K  K  G  E  W  L  P  G  L  T  S  P  T  Y  L  N  G  R  *  C  M  Y  I  S  I  Q  N  H  D  N  K  C  V  I  C  L  C  F  I  Q  T  T  K  Q  L  V  I  Y  N  G  L  L  *  S  C  G  *  Q  W  F  *  S  I  G  T  R  G  G  S  G  E  L  E  M  V  C  S  G  *  A  S  E  R  S  M  G  Y  V  G  C  C  R  D  V  T  T  *  G  F  H  *  H  W  P  S  *  R  T  K  M  V  R  C  W  K  I  R  L  L  C  I  I  V  N  I  I  C  D  R  V  H  L  V  S  L  R  *  N  S  T  L  A  R  H  *  E  P  W  K  C  E  P  R  S  Y  F   </second_frame>
            <third_frame>   S  S  L  H  P  P  L  R  Q  G  S  S  T  D  H  P  V  N  *  T  E  I  S  L  L  N  H  Q  R  C  L  T  I  H  S  K  L  K  Q  K  K  V  N  G  F  Q  A  *  P  L  L  L  T  L  M  E  G  N  V  C  T  F  Q  Y  K  I  M  I  T  N  V  S  F  V  F  A  S  Y  R  L  L  N  N  L  *  Y  I  M  V  C  C  S  L  A  G  D  N  G  F  D  P  L  G  L  A  E  D  P  E  N  L  R  W  F  V  Q  A  E  L  V  N  G  R  W  A  M  L  G  V  A  G  M  L  L  P  E  V  F  T  S  I  G  L  L  N  V  P  K  W  Y  D  A  G  K  S  D  Y  F  A  S  S  S  T  L  F  V  I  E  F  I  L  F  H  Y  V  E  I  R  R  W  Q  D  I  K  N  P  G  S  V  N  Q  D  P  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69197" stop="68868"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIMVCCSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGLLNVPKWYDAGKSDYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="70503" PGL_stop="71204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70503" e_stop="71204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="70503" e_stop="71204" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70503" stop="71204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCACCATTCCAAATCTTTTCCAGTATCGACTTCTCATTTGCTTCTTTTTCATCAGTTTAGATACAGTTATTGTCTTTATATAGTCTTTGTGTTTTTGTTGTTGTGATTCTTAGTTGTTTTTTTTTTTGTAGAAATTCACTTGTGTCCCTCAGTTTGTGGTAAATTTTGTTTCTTTGCTTCATTTATCAGCTCAAATCTATGCGCCTCTGCCTATGATGGCATTAAATATACTTTGAGTATTTCACTATGAAACAACTTGTAATCTGAGGCTTGAGGCTTTATCAATTCCTTGTGTATTCGTGAACTTTTGCGATCCATCTTTGCTTGTTTAATTAATGGGTCTGATATCCTTTTGCTAAAGGAAGAAGCTTTATATAATACATAAGAATTTCAAAATGTTACTACTTTCGCTGACTTTCTTTTTGAAATTCATTATGCCTCTGCTTTTCCAGTAGTGAGAGTCTTGGTTATTATTATATATGTATTCCGCAGGGCAGTTGTCAAGATTATGATTTTGAAATAGCTTGCTTTGGATCCTATTTAATTTGCTAATTCAATGCTTATAGTCATGTTGCATTTTTGGCGGATGGTTTATAAAGAATTTGATATGAGGGATACACTTGTTTATCTTAACTATGAACTCGTCATAATCTTTAACCATTTTCAGTTTTTCCCTCATTTGGTCATTGCAATGATGAT</gDNA_template>
            <first_frame> P  P  P  F  Q  I  F  S  S  I  D  F  S  F  A  S  F  S  S  V  *  I  Q  L  L  S  L  Y  S  L  C  V  F  V  V  V  I  L  S  C  F  F  F  C  R  N  S  L  V  S  L  S  L  W  *  I  L  F  L  C  F  I  Y  Q  L  K  S  M  R  L  C  L  *  W  H  *  I  Y  F  E  Y  F  T  M  K  Q  L  V  I  *  G  L  R  L  Y  Q  F  L  V  Y  S  *  T  F  A  I  H  L  C  L  F  N  *  W  V  *  Y  P  F  A  K  G  R  S  F  I  *  Y  I  R  I  S  K  C  Y  Y  F  R  *  L  S  F  *  N  S  L  C  L  C  F  S  S  S  E  S  L  G  Y  Y  Y  I  C  I  P  Q  G  S  C  Q  D  Y  D  F  E  I  A  C  F  G  S  Y  L  I  C  *  F  N  A  Y  S  H  V  A  F  L  A  D  G  L  *  R  I  *  Y  E  G  Y  T  C  L  S  *  L  *  T  R  H  N  L  *  P  F  S  V  F  P  S  F  G  H  C  N  D  D </first_frame>
            <second_frame>  H  H  H  S  K  S  F  P  V  S  T  S  H  L  L  L  F  H  Q  F  R  Y  S  Y  C  L  Y  I  V  F  V  F  L  L  L  *  F  L  V  V  F  F  F  V  E  I  H  L  C  P  S  V  C  G  K  F  C  F  F  A  S  F  I  S  S  N  L  C  A  S  A  Y  D  G  I  K  Y  T  L  S  I  S  L  *  N  N  L  *  S  E  A  *  G  F  I  N  S  L  C  I  R  E  L  L  R  S  I  F  A  C  L  I  N  G  S  D  I  L  L  L  K  E  E  A  L  Y  N  T  *  E  F  Q  N  V  T  T  F  A  D  F  L  F  E  I  H  Y  A  S  A  F  P  V  V  R  V  L  V  I  I  I  Y  V  F  R  R  A  V  V  K  I  M  I  L  K  *  L  A  L  D  P  I  *  F  A  N  S  M  L  I  V  M  L  H  F  W  R  M  V  Y  K  E  F  D  M  R  D  T  L  V  Y  L  N  Y  E  L  V  I  I  F  N  H  F  Q  F  F  P  H  L  V  I  A  M  M   </second_frame>
            <third_frame>   T  T  I  P  N  L  F  Q  Y  R  L  L  I  C  F  F  F  I  S  L  D  T  V  I  V  F  I  *  S  L  C  F  C  C  C  D  S  *  L  F  F  F  L  *  K  F  T  C  V  P  Q  F  V  V  N  F  V  S  L  L  H  L  S  A  Q  I  Y  A  P  L  P  M  M  A  L  N  I  L  *  V  F  H  Y  E  T  T  C  N  L  R  L  E  A  L  S  I  P  C  V  F  V  N  F  C  D  P  S  L  L  V  *  L  M  G  L  I  S  F  C  *  R  K  K  L  Y  I  I  H  K  N  F  K  M  L  L  L  S  L  T  F  F  L  K  F  I  M  P  L  L  F  Q  *  *  E  S  W  L  L  L  Y  M  Y  S  A  G  Q  L  S  R  L  *  F  *  N  S  L  L  W  I  L  F  N  L  L  I  Q  C  L  *  S  C  C  I  F  G  G  W  F  I  K  N  L  I  *  G  I  H  L  F  I  L  T  M  N  S  S  *  S  L  T  I  F  S  F  S  L  I  W  S  L  Q  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066I09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="79073" PGL_stop="78572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79073" e_stop="78572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="79073" e_stop="78572" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79073" stop="78572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  F  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  L  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  L  L  L  W  L  A  I  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  D  S  S  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  *  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  K  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  F  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  F  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  S  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  I  *  *  K  N  I  F  Q  S  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  S  P  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  Y  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  L  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79044" stop="78814"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQSYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDNPFKSSEISSILSPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="87827" PGL_stop="88214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87827" e_stop="88214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="87827" e_stop="88214" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87827" stop="88214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAGGTTTCATATTTGAAGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATATTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCTAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCGTACTTGCTCATTATTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC</gDNA_template>
            <first_frame> Y  *  Y  F  G  K  Y  S  S  A  F  L  R  Y  F  P  A  L  F  E  Y  K  V  N  H  F  V  L  F  N  R  F  H  I  *  S  S  S  *  R  L  T  E  E  G  F  V  Y  L  F  E  C  I  Y  V  Y  I  F  Y  F  F  R  Y  F  I  Y  S  N  V  V  T  I  V  T  L  R  S  Y  N  K  V  I  W  G  S  S  R  G  G  G  F  I  C  V  L  A  H  Y  F  F  *  K  S  C  L  *  V  C  L  *  P  P  R  F  D  I  C  R  C  Y  N  L  I  N  F  Q  F  A  *  </first_frame>
            <second_frame>  I  N  I  S  A  N  I  Q  V  L  F  S  A  I  F  L  L  C  S  S  T  R  *  I  I  L  F  C  L  T  G  F  I  F  E  V  Q  V  E  D  *  L  K  K  D  L  F  I  C  L  N  V  Y  M  S  I  Y  F  I  F  S  A  I  L  F  I  R  M  L  *  Q  L  *  P  *  D  H  I  I  K  L  F  G  G  R  L  G  E  G  D  L  Y  A  Y  L  L  I  I  F  F  R  N  H  A  Y  R  F  V  F  N  H  L  D  L  I  F  V  G  V  I  I  *  S  I  F  N  L  L  D </second_frame>
            <third_frame>   L  I  F  R  Q  I  F  K  C  F  S  P  L  F  S  C  F  V  R  V  Q  G  E  S  F  C  F  V  *  Q  V  S  Y  L  K  F  K  L  K  I  N  *  R  R  I  C  L  F  V  *  M  Y  I  C  L  Y  I  L  F  F  P  L  F  Y  L  F  E  C  C  N  N  C  N  P  K  I  I  *  *  S  Y  L  G  V  V  *  G  R  G  I  Y  M  R  T  C  S  L  F  F  L  E  I  M  P  I  G  L  S  L  T  T  *  I  *  Y  L  *  V  L  *  S  N  Q  F  S  I  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0066I09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="94520" PGL_stop="96641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94520" e_stop="94579"/>
            <exon e_start="95741" e_stop="96395"/>
            <exon e_start="96596" e_stop="96641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.528" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94520" e_stop="94579" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.528">
            <gDNA_intron_boundary i_start="94580" i_stop="95740" i_length="1161"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95741" e_stop="96395" e_length="655"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96396" i_stop="96595" i_length="200"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="96596" e_stop="96641" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94520" stop="94579"/>
              <exon start="95741" stop="96395"/>
              <exon start="96596" stop="96641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTTCTCTCTCAAGATCGTAGGGTTTCTCTCTCCAATATTTCACCTTTACTTTGCAG : ATCCTCAACATTCAGAGCCAAAATGGCGACTACTTGTGATACTAAATTGAGCATGAAGCTTTTGATTGACACCAAGGCTGGCAAAGTCCTATTTGCCGAGGCTGATAAGGACTGTGTTGATTTCCTCTTTCACATTCTCTCATTGCCTGCTGGAACCGTTATCAGTCTTCTTAAGGAGAAAGGAATGAGTGGTTCCTTGCCTAACCTCTACGAAAGTGTAGAAAATCTGAAGGACACCTATATTCAATCGAACCAATGCAAGGATATCCTTTTAAAACCCAAGTCTTCAGTTGGGATCTCTCCAGTTCCTTTTCTATTGCTTGATGGCCATGTTACGACACGTGAGAAGACTTTTTACGGCTGTTCCTACTCTAGTTCCCACTTAACTGTTTCTGATGACCCTACTGCTCTCTGTACAATCTGTAATCATACTATGTCAGATAAGTTAGTTTATGCTGCTCCGCGAGTAGCAGGTGGAGCTGTGGAAGCAAAAGGAAAAGGGGGTTTTGTGAAGGATGTTGTGACATACATGGTGGCAGATGACTTGGTAGTCAAGCCCATGTCCACCATCTCTTGCATTGCTCTTCTCAACAAGTTTAATGTCAGGGATGTTGGTGTACTAGAGGAGGAAGTTGTAAGTTTCGGAGTGGAAGAG : GCACTGGAGTTGCTGAAGGCATCTTTGGAGTCGAAAACAGTTCTGA</gDNA_template>
            <first_frame> S  F  S  L  S  R  S  *  G  F  S  L  Q  Y  F  T  F  T  L  Q  :  I  L  N  I  Q  S  Q  N  G  D  Y  L  *  Y  *  I  E  H  E  A  F  D  *  H  Q  G  W  Q  S  P  I  C  R  G  *  *  G  L  C  *  F  P  L  S  H  S  L  I  A  C  W  N  R  Y  Q  S  S  *  G  E  R  N  E  W  F  L  A  *  P  L  R  K  C  R  K  S  E  G  H  L  Y  S  I  E  P  M  Q  G  Y  P  F  K  T  Q  V  F  S  W  D  L  S  S  S  F  S  I  A  *  W  P  C  Y  D  T  *  E  D  F  L  R  L  F  L  L  *  F  P  L  N  C  F  *  *  P  Y  C  S  L  Y  N  L  *  S  Y  Y  V  R  *  V  S  L  C  C  S  A  S  S  R  W  S  C  G  S  K  R  K  R  G  F  C  E  G  C  C  D  I  H  G  G  R  *  L  G  S  Q  A  H  V  H  H  L  L  H  C  S  S  Q  Q  V  *  C  Q  G  C  W  C  T  R  G  G  S  C  K  F  R  S  G  R   : G  T  G  V  A  E  G  I  F  G  V  E  N  S  S   </first_frame>
            <second_frame>  H  F  L  S  Q  D  R  R  V  S  L  S  N  I  S  P  L  L  C  R :   S  S  T  F  R  A  K  M  A  T  T  C  D  T  K  L  S  M  K  L  L  I  D  T  K  A  G  K  V  L  F  A  E  A  D  K  D  C  V  D  F  L  F  H  I  L  S  L  P  A  G  T  V  I  S  L  L  K  E  K  G  M  S  G  S  L  P  N  L  Y  E  S  V  E  N  L  K  D  T  Y  I  Q  S  N  Q  C  K  D  I  L  L  K  P  K  S  S  V  G  I  S  P  V  P  F  L  L  L  D  G  H  V  T  T  R  E  K  T  F  Y  G  C  S  Y  S  S  S  H  L  T  V  S  D  D  P  T  A  L  C  T  I  C  N  H  T  M  S  D  K  L  V  Y  A  A  P  R  V  A  G  G  A  V  E  A  K  G  K  G  G  F  V  K  D  V  V  T  Y  M  V  A  D  D  L  V  V  K  P  M  S  T  I  S  C  I  A  L  L  N  K  F  N  V  R  D  V  G  V  L  E  E  E  V  V  S  F  G  V  E  E  :  A  L  E  L  L  K  A  S  L  E  S  K  T  V  L  </second_frame>
            <third_frame>   I  F  S  L  K  I  V  G  F  L  S  P  I  F  H  L  Y  F  A   : D  P  Q  H  S  E  P  K  W  R  L  L  V  I  L  N  *  A  *  S  F  *  L  T  P  R  L  A  K  S  Y  L  P  R  L  I  R  T  V  L  I  S  S  F  T  F  S  H  C  L  L  E  P  L  S  V  F  L  R  R  K  E  *  V  V  P  C  L  T  S  T  K  V  *  K  I  *  R  T  P  I  F  N  R  T  N  A  R  I  S  F  *  N  P  S  L  Q  L  G  S  L  Q  F  L  F  Y  C  L  M  A  M  L  R  H  V  R  R  L  F  T  A  V  P  T  L  V  P  T  *  L  F  L  M  T  L  L  L  S  V  Q  S  V  I  I  L  C  Q  I  S  *  F  M  L  L  R  E  *  Q  V  E  L  W  K  Q  K  E  K  G  V  L  *  R  M  L  *  H  T  W  W  Q  M  T  W  *  S  S  P  C  P  P  S  L  A  L  L  F  S  T  S  L  M  S  G  M  L  V  Y  *  R  R  K  L  *  V  S  E  W  K  R :   H  W  S  C  *  R  H  L  W  S  R  K  Q  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0066I09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94521" stop="94579"/>
                    <exon start="95741" stop="96395"/>
                    <exon start="96596" stop="96640"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFLSQDRRVSLSNISPLLCRSSTFRAKMATTCDTKLSMKLLIDTKAGKVLFAEADKDCVDFLFHILSLPAGTVISLLKEKGMSGSLPNLYESVENLKDTYIQSNQCKDILLKPKSSVGISPVPFLLLDGHVTTREKTFYGCSYSSSHLTVSDDPTALCTICNHTMSDKLVYAAPRVAGGAVEAKGKGGFVKDVVTYMVADDLVVKPMSTISCIALLNKFNVRDVGVLEEEVVSFGVEEALELLKASLESKTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 293384 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 19558 bytes was the average size of a spliced alignment
$ 21512 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1536 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:42:26
-->
