<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:24:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1052" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="752" g_stop="211" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="752" e_stop="211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAACTTCCGAAATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCAGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCGGGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTTTTGTGTTCATACTTTACTTGCTGACAATTTGGACATTTGGCAACAAACTCCACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACGCGGGGTACGCATAC-CCTTCCCTTGATTCTTAAAACACCTTCCTCATCAATTGTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732887" ref_strand="+" ref_description="SGN-E732887 [LB03BF07]">
      <seq>cgatttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctcccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttcctaaatgagccgttcatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50340" stop="46261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50044" g_stop="49983" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="108" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="136" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="224" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="292" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="362" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="398" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46559" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="776" r_length="378" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E732887" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50044" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAAGCAATTTCCTAAATGAGCCGTTCATATATATCAAATC</genome_strand>
        <mrna_strand>CGATTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAAGCAATTTCCTAAATGAGCCGTTCATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716033" ref_strand="+" ref_description="SGN-E716033 [FB15DG07]">
      <seq>catcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcccctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctcccccgttttgggtgaagttgtgctgtaatatgttggtcaatcactgtggataatgaatgaatagctattcaagcaatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50510" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50210" g_stop="49983" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="274" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="302" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="390" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="458" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="528" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="564" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46576" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="925" r_length="361" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E716033" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50210" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAAGCAATTTCCTAAATGAGCCG</genome_strand>
        <mrna_strand>CATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCCCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCAATCACTGTGGATAATGAATGAATAGCTATTCAAGCAATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747464" ref_strand="+" ref_description="SGN-E747464 [GI|38231569]">
      <seq>aaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctcccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagcgtattcaagcaatttcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50524" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50224" g_stop="49983" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="288" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="316" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="404" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="472" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="542" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="578" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="920" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="931" polyA_stop="947"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E747464" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50224" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGC-TATTCAA</genome_strand>
        <mrna_strand>AAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCGTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556921" ref_strand="+" ref_description="SGN-E556921 [cTSD-1-B9]">
      <seq>ctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctccccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50465" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="49983" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="229" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="257" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="345" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="413" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="483" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="519" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="861" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="873" polyA_stop="884"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E556921" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>CTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694657" ref_strand="+" ref_description="SGN-E694657 [LH_Ea04H23](-)">
      <seq>cctcactttcaaaatccaatttctcccttcactccttttcttcttctccatccttgtcacaattccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaagtgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcattactgaaaatgggcgttcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaggaccaggttgaaggagtcattgccaagataattcaagaggcaagaactggcgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacgaggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctcttatcttgaagttgaaacgtttaatcagtcaagtagggaataaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcgtaacagccattttgtatttgcacacttcagctcaatcgtggtaactttgccccctccccccgttttgggaggagttgtgctgtaatatgttggttgatccctgtgcataataggtgataagctattcaagcaatttcctaaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50462" stop="46280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50162" g_stop="49983" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="254" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="342" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="410" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="480" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="516" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="843" r_length="327" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="854" polyA_stop="872"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E694657" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50162" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTC-TATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>CCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTTTCTTCTTCTCCATCCTTGTCACAATTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAGTGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTACTGAAAATGGGCGTTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAGGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTCAAGAGGCAAGAACTGGCGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGAGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTTATCTTGAAGTTGAAACG-TT--T-A-----A------T-CAGTCAAGTAGGGAATAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCGTAACAGCCATTTTGTATTTGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGAGGAGTTGTGCTGTAATATGTTGGTTGATCCCTGTGCATAATAGGTGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715244" ref_strand="+" ref_description="SGN-E715244 [FB13DA02]">
      <seq>gtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctcccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttcctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48933" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48633" g_stop="48588" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="116" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="152" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="493" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="519"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E715244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48633" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>GTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215400" ref_strand="+" ref_description="SGN-E215400 [cLEL-20-G18](-)">
      <seq>gagtcattgccttgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttctttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctccccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttcctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48672" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48372" g_stop="48310" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="99" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="442" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="475"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E215400" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48372" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTC-TTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>GAGTCATTGCCTTGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223501" ref_strand="+" ref_description="SGN-E223501 [cLEL-14-C3](-)">
      <seq>ataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgccttctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctccccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48631" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48331" g_stop="48310" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="58" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="401" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="429"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E223501" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48331" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCC-TCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>ATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215304" ref_strand="+" ref_description="SGN-E215304 [cLEL-20-G18](-)">
      <seq>cgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctccccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttcctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47242" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47088" g_stop="47082" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46936" g_stop="46596" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="349" r_length="342" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="382"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E215304" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47088" e_stop="47082"/>
          <exon e_start="46936" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>CGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223412" ref_strand="+" ref_description="SGN-E223412 [cLEL-14-C3](-)">
      <seq>acggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggagcaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctccccccgttttgggtgaagttgtgctgtaatatgttggtcgatcactgtggatattgaatgataagctattcaagcaatttcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47232" stop="46283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46932" g_stop="46596" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="366"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E223412" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46932" e_stop="46596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</genome_strand>
        <mrna_strand>ACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAGCAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320012" ref_strand="+" ref_description="SGN-E320012 [cTOB-31-O3]">
      <seq>ttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctccccccgttttggggtgaagtgtgctgtaatatgttggtcgatcactgtggatattgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50400" stop="46309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50100" g_stop="49983" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="164" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="192" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="280" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="348" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="418" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="454" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46609" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="783" r_length="329" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E320012" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50100" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCT-CCCCCGTTTT-GGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATG</genome_strand>
        <mrna_strand>TTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCCGTTTTGGGGTGAAG-TGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702371" ref_strand="+" ref_description="SGN-E702371 [FA18CB06]">
      <seq>ttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaacttttgcccccctcccccgttttgggtgaagttgtgctgtaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50528" stop="46333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50228" g_stop="49983" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="292" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="320" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="408" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="476" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="546" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="582" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46633" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="888" r_length="306" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E702371" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50228" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAAC-TTTG-CCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTG</genome_strand>
        <mrna_strand>TTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTTGCCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706501" ref_strand="+" ref_description="SGN-E706501 [FA30AE10]">
      <seq>atttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatcgtggtaactttgccccctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50530" stop="46365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50230" g_stop="49983" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="294" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="322" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="410" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="478" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="548" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="584" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46665" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="856" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E706501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50230" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCC</genome_strand>
        <mrna_strand>ATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701889" ref_strand="+" ref_description="SGN-E701889 [FA17AH08]">
      <seq>aacaagagaaaaggtaaagaatccaaattattcagaaatggcgttacttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccattttcgtatatgcacacttcagctcaatcgtggtaactttgccccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50593" stop="46367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50293" g_stop="49983" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="357" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="385" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="473" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="541" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="611" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="647" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46667" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="918" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E701889" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50293" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAGAAAAGGTAAAGAATCCAAATTATTCAGAAATGGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCA-TTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCC</genome_strand>
        <mrna_strand>AACAAGAGAAAAGGTAAAGAATCCAAATTATTCAGAAATGGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326038" ref_strand="+" ref_description="SGN-E326038 [cTOC-16-A17]">
      <seq>aacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50479" stop="46387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50179" g_stop="49983" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="243" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="271" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="427" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="497" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="533" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46687" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="783" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E326038" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50179" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATC</genome_strand>
        <mrna_strand>AACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708862" ref_strand="+" ref_description="SGN-E708862 [FA36DH08]">
      <seq>caataagagaaaaggtaaagaatccaaattattcagaaatggcgttacttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtaggggacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacacccatttcgtatatgcacacttcacctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50593" stop="46388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50294" g_stop="49983" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="358" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="386" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="474" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="542" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="612" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="648" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46688" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="897" r_length="249" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E708862" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50294" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAGAGAAAAGGTAAAGAATCCAAATTATTCAGAAATGGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAAT</genome_strand>
        <mrna_strand>CAATAAGAGAAAAGGTAAAGAATCCAAATTATTCAGAAATGGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGGACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACACCCATTTCGTATATGCACACTTCACCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717856" ref_strand="+" ref_description="SGN-E717856 [FC02DG07]">
      <seq>aatcggccgaattgaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50473" stop="46392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50173" g_stop="49983" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="205" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="251" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="279" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="367" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="435" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="505" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="541" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46692" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="786" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E717856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50173" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCT</genome_strand>
        <mrna_strand>AATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727640" ref_strand="+" ref_description="SGN-E727640 [LA15BB11]">
      <seq>cgttacttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatcgtagcttaacagccatttcgtatatgcacacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50552" stop="46396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50252" g_stop="49983" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="316" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="344" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="432" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="500" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="570" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="606" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46696" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="847" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E727640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50252" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTC</genome_strand>
        <mrna_strand>CGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718169" ref_strand="+" ref_description="SGN-E718169 [FC03DF05]">
      <seq>agggcgattggcggcaaatcggccgaattgagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccaaatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacacctctatcttgaagttgaaacgtttaatcatctttagttgtgtgcagtcaagtagggaacaaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50507" stop="46430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50197" g_stop="49983" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="247" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="293" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="321" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="409" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="477" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="547" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="583" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46730" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="790" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E718169" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50197" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATC</genome_strand>
        <mrna_strand>CTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAA................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACACCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690817" ref_strand="+" ref_description="SGN-E690817 [LH_Ea04H23]">
      <seq>cctttaaggactcaacgccaatggcttctccctcactttccattccaatttctcccttcactccttttcttcttctccatccttgtcacaattccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaagtgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaaacaattctaagaccttggagaattcaacaggtttcttcggcattactgaaaatgggcgttcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaggaccaggttgaaggagtcattgccaagataattcaagaggcaagaactggcaaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacgaggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctcttatcttgaagttgaaacgtttaatcagtcaagtagggaataaaataaataagttggagacttaccatgtacctgtggtttcagtagccaatttccataaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50483" stop="46431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50192" g_stop="49983" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="255" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="283" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="371" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="439" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="509" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="545" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46731" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="736" r_length="191" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E690817" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50192" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTC-TATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAAT</genome_strand>
        <mrna_strand>CCTTTAAGGACTCAACGCCAATGGCTTCTCCCTCACTTTC-CATTCCAATTTCTCCCTTCACTCCTTTTCTTCTTCTCCATCCTTGTCACAATTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAGTGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAACAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTACTGAAAATGGGCGTTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAGGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTCAAGAGGCAAGAACTGGCAAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGAGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTTATCTTGAAGTTGAAACG-TT--T-A-----A------T-CAGTCAAGTAGGGAATAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706039" ref_strand="+" ref_description="SGN-E706039 [FA28DD02]">
      <seq>cgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcacagcccaaaactctccaaatttcgtccctgatgcgaagatttacaaagttgaagcaattctaagacacttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttctgatgttcgtggttttggcgcccaaggtggcttgactgataggcaagctggatctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcaacaaagaccatgttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcatgactcccatctccgatgttataagagttcgcactggagaacggggataaaaggaagataggatgatgggagggcatgctgatatatcctctgcattatcaacttcttgaacggcaacgcctctatcttgaagttgaaacgtttaatcatctttagatgtgtgcagtcaagtacggaacaaaataaataagttggagacttaccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50507" stop="46465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50207" g_stop="49983" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="271" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="300" r_length="29" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="388" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.738" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="456" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="526" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="562" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46765" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="734" r_length="172" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E706039" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50207" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGAC-CTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGT</genome_strand>
        <mrna_strand>CGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCACAGCCCAAAACTCTCCAA................................................................................................................ATTTCGTCCCTGATGCGAAGATTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACACTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCTGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGATAGGCAAGCTG..........................................................................................................GATCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAACAAAGACCAT................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GAGAACGGGGATAAAAGGAAGATAGGATGATGGGAGGGCATGCTGATATATCCTCTGCATTATCAACTTCTTGAACGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGATGTGTGCAGTCAAGTACGGAACAAAATAAATAAGTTGGAGACTTACCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728802" ref_strand="+" ref_description="SGN-E728802 [LA19AA03]">
      <seq>cttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagcggcaacgcctctatcttgaagttgaaacgtataatcatctttagttgtgtgcagtcaagtagggaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50547" stop="46491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50247" g_stop="49983" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="311" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="339" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="427" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="565" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="601" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46791" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="747" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E728802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50247" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAA</genome_strand>
        <mrna_strand>CTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTATAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330052" ref_strand="+" ref_description="SGN-E330052 [cTOD-5-K11]">
      <seq>caactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50485" stop="46510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50185" g_stop="49983" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="249" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="277" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="365" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="433" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="503" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="539" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46810" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="666" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E330052" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50185" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTG</genome_strand>
        <mrna_strand>CAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324518" ref_strand="+" ref_description="SGN-E324518 [cTOC-9-O19]">
      <seq>acagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctttagttgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50404" stop="46510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50104" g_stop="49983" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="168" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="196" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="284" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="352" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="422" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="458" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46810" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="585" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E324518" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50104" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTG</genome_strand>
        <mrna_strand>ACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327868" ref_strand="+" ref_description="SGN-E327868 [cTOC-22-G23]">
      <seq>tagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacngttaatcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50517" stop="46519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50217" g_stop="49983" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="281" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="309" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="397" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="465" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="535" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="571" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46819" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="689" r_length="118" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E327868" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50217" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTT</genome_strand>
        <mrna_strand>TAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACNGTTAATCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328123" ref_strand="+" ref_description="SGN-E328123 [cTOC-22-H10]">
      <seq>tagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcagatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagataaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcaacgcctctatcttgaagttgaaacgtttaatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50517" stop="46520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50217" g_stop="49983" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="281" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="309" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="397" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="465" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="535" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="571" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46820" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="688" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E328123" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50217" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTT</genome_strand>
        <mrna_strand>TAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCAGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGATAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328911" ref_strand="+" ref_description="SGN-E328911 [cTOC-24-H17]">
      <seq>aacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcagagaggatgatgggagggcatgctgatatgtcctctgcattatcaacttcttgagtggcacgcctctatcttgaagttgaaacgtttaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50479" stop="46522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50179" g_stop="49983" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="243" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="271" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="427" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="497" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="533" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46822" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="647" r_length="114" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E328911" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50179" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATC</genome_strand>
        <mrna_strand>AACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGTGGC-ACGCCTCTATCTTGAAGTTGAAACGTTTAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321978" ref_strand="+" ref_description="SGN-E321978 [cTOB-29-B5]">
      <seq>ttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggaagaaaggcaaagaggatgatgggagggcatgctgatatgtcctctgcattatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50546" stop="46569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50246" g_stop="49983" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="310" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="338" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="426" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="494" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="564" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="600" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="668" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E321978" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50246" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACT</genome_strand>
        <mrna_strand>TTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAAGAAAGGCAAAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207517" ref_strand="+" ref_description="SGN-E207517 [cLEC-36-D8]">
      <seq>gccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatgttataagagttcgcactggtgaacggggagaaaaggcaaagaggatgatgggagggcatgctgatatgtcctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50476" stop="46578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50176" g_stop="49983" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="240" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="268" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="356" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="424" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="494" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47117" g_stop="47082" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46936" g_stop="46878" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="589" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E207517" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50176" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
          <exon e_start="47117" e_stop="47082"/>
          <exon e_start="46936" e_stop="46878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCTGTAAGTTTTTCTCTTCATGATCTTGGAGTTTTTGATGTAATATCTCTAACCAAGCTTGAAAGCATTCAGTTAATGTTTCCTCAATGAGTATGCTGTATATTTTCATATGATGATTCATGACATATCTTCTGTACAGGGTAAGGTGTAACACATAAATCATAATCTATTAATCTTTAATTTACTGTGTTGTTTCCAAGCAAATGTTTGCCTGAGTAATCTAAGTGTGTTGCACATGAAGTGGGAAAACCAATGCCAGCCAGCCTTTTAATACGTGCTTGCAATGACAATCCATATATGTATACGAGAAGAAACAAATAGAGATACTATCCCAAAATTTTAAAATAAGATAAAAAGCTGTAGGAATTTCAAACTTTTTGATCTTTTTACCTTCTATTTTATCAGACAAGAAAATCCATCAGTGACATTGTTCACAATAGTTTAATTGAAGCCCAAATTTGTTGAGCTCTCCTTTGCTTTGATGCTTATTTTCTTAAATATTTAAACGTCTTGTGAGAAAACATGATTCCAGTTCTAGCTTATAAAGATACATACATTTATAATTTATCGACACACACACACTCTTCAATGTTTTCCTCTCAAGGCCTTTTATTTTGTGAGTATGTTTCTCATGTTAGAAGCCTATCTTTGATCTTAATTTCATTTATTCTACCAAAATGTCGAGCCAAGCCTGGAGTGGATCATCACACAGGTTGTCTGATGCTACAAGAGCTTATTGTGTGCTCAAGTTAATGGCCATATTTGTATTAGCAAGTGGTTTGTTAATGGACATATTTTTTTCTTTAGTATTAAAACTAAAAAAGATACAGGTATGTATTCAGAAGAAATTTATTGAAGAGCATAAAACACAGTTTCCAGTGGTAATTAGTTCACATGTATGTATTTGGGAGGGATCCTTTACTTTTGGCCAAGCCTCTATTTTGCAAGGGATCTCTTGGGTAATATTAGCGCAATCACATTACATAGTTTTGATCTTGCTAACGTTTAAGCATGACATGTTTTTCCTTGCAAAGAAAATCTTAAACGAGTGAAAGAGACCCTGAAGTTTCAAAGTGGCTGTTAAAGTTGGGCCATCTATTGGCTGTTAAATGATGTGCTAGACATTATTGTCTTTATGAAAATATTACAAAATGTACTGAATTGTTGATGCTGTTTTTTTTAAAAACTTTGGCAGTGACTCCCATCTCCGATGTTATAAGAGTTCGCACTGGTAAGTAGAATGTTTTGCTTAATGATACTCCATTTGTATTTATAAGTTAGATAGTCTCCGTAGGTTGATTAATCATTTAAATTTCATATCCTTCATAGAGGTTTGAACTTGTCCCTTGTAATGATTCTATGGTATGCTGGAACAGGTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCA</genome_strand>
        <mrna_strand>GCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG.................................................................................................................................................GTGAACGGGGAGAAAAGGCAAAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279511" ref_strand="+" ref_description="SGN-E279511 [cLER-5-E12]">
      <seq>ttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50536" stop="48004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50236" g_stop="49983" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="300" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="328" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="416" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="484" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="554" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E279511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50236" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT</genome_strand>
        <mrna_strand>TTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275960" ref_strand="+" ref_description="SGN-E275960 [cLEN-12-J19]">
      <seq>actcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgaccgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50513" stop="48004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50213" g_stop="49983" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="277" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="305" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="393" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="461" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="531" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E275960" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50213" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT</genome_strand>
        <mrna_strand>ACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACCGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319255" ref_strand="+" ref_description="SGN-E319255 [cTOB-16-O13]">
      <seq>tggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacacgtttcttcggcactactgaaaatgggcatccgtggtgtcactgttccggatgttcatggttttggcgcccatagtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccacgttgaaggagtcattgccatgataattgaagaggcaagaactggtgaaataggtgatggaaagatattcttgactcccatctccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50471" stop="48004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50171" g_stop="49983" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="235" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="263" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="351" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="419" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="489" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E319255" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50171" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT</genome_strand>
        <mrna_strand>TGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACACGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATCCGTGGTGTCACTGTTCCGGATGTTCATGGTTTTGGCGCCCATAGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAC................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCATGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287672" ref_strand="+" ref_description="SGN-E287672 [cLES-9-M14]">
      <seq>gattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaaattgttgtcagcaaagaccaggttgaaggagtcattgccaagataattgaagaggcaagaactggtgaaataggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50506" stop="48025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50206" g_stop="49983" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="270" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="298" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="386" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="454" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48379" g_stop="48325" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="509" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E287672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50206" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48588"/>
          <exon e_start="48379" e_stop="48325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAGGTTTTGAATTTAATAGGCCTTGACCAAGCTTTCTGTGAGCTATCATTTAAAATCATGTGTTAGAAGTATATGATTATAGAAGTATATGGTTAAGGTGTCATTTATCTCTCCTATGTATATAGAAGTTTTATCTAAGTGGTGCTCCTTGCGATATGATTGTGCTTTTTAGATGTTAGTTCTGATATAACCTGTAATGCTGTCTTATTAGGTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTG</genome_strand>
        <mrna_strand>GATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG................................................................................................................................................................................................................GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318297" ref_strand="+" ref_description="SGN-E318297 [cTOA-29-B12]">
      <seq>gttacttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgcaactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaaggtggcttgactgagaggcaagctggctctgaattctctgaagacacgtttgttgcaaaagttaaaatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50551" stop="48309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50251" g_stop="49983" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="315" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="343" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48762" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="431" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48655" g_stop="48609" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="478" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E318297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50251" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48762"/>
          <exon e_start="48655" e_stop="48609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTGGTATGGAAATATTCATCAATTTTAAGTGTTTATTTACATTGTCTTGAATATTTCTCGATTAAAAAGAGATTCTTCCTTGGGTTTTGAAGTTATCTGCTGCTTTCAGGCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAA</genome_strand>
        <mrna_strand>GTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG..........................................................................................................GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319232" ref_strand="+" ref_description="SGN-E319232 [cTOB-16-A17]">
      <seq>tggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccatatctctccagatttcgtccctgatgcgaagttttacaaagttgaagcaatgctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtggtgtcactgtttcggatgttcgtggttttggcgcccaatgtggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50471" stop="48479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50171" g_stop="49983" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="235" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="263" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48779" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="334" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E319232" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50171" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTT</genome_strand>
        <mrna_strand>TGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCATATCTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATGCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAATGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278507" ref_strand="-" ref_description="SGN-E278507 [cLEL-2-H11](-)">
      <seq>gcacgagcgttacttcacttcacttcactatttttaaggccatagaactcatcgattatcagctctctcttctgccactcaacgccaatggcttctccctcactttcaaaatccaatttctcccttcactccttctcttcttctccatccttgtcacagttccctcatttcacttccatcaccgttgttcaacccaaattcttcccttcgcagctcaccttcaaacgctgtcaaaatgctccttctttcccgattatcagagcccaaaactctccagatttcgtccctgatgcgaagttttacaaagttgaagcaattctaagaccttggagaattcaacaggtttcttcggcactactgaaaatgggcattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50556" stop="48525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50259" g_stop="49983" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49870" g_stop="49825" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="323" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49722" g_stop="49695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="351" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48849" g_stop="48825" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="376" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E278507" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278507" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50259" e_stop="49983"/>
          <exon e_start="49870" e_stop="49825"/>
          <exon e_start="49722" e_stop="49695"/>
          <exon e_start="48849" e_stop="48825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAGGTTTCAATTTTGCTTAAACCCCACTTCATAAGTTCACTTATTTAGTAACGGGTCAATGTTTTTTTCTTCTTTTGTTGCTTATAGAAGTAATGGGTCGGTTTTGTGTTTTCAGATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAGGTGATAGCATCATTTTTCTTTACTAATGTATTCTAATCTGCTTTCTATACTCTGTTTACTGATTCAATTTTGCGTCTTCTGCAAATTTTGGAATGGACTTAGACCTTGGAGAATTCAACAGGTTTCTTCGGTAAGAACTTGATTATTTTCATATGCATGCGCCAGTTTTTAGAAAAAAAAAATTGAATCTTTTCCTTTTGTGATCCTTAAGGTTGCAGGCCTATATGATTGCTTAAATTGAGGCTCTTTATTGAACTTTTTTGGGTTTCTTTTTACTCAACCCCTATTTTGCATTCTATGACATCATAGTAAAGCCTATATATTGTGGAAAATACTTTTACAGCACAGCTTTAATCTCAGTGGTGATCAAAGTTGTAAAGAGCCAAAGGGTTAATTGAAATGCTGCTAGCTTGCTCTACTGATAAGTTTGAATTTCACCTTGGTTCTTTCTTGTTATACAGTCTTATATCTCCATAGATCTTAATATGTGTATACCTTTTTCTTTGCTATATTGTCATATAATTACCCTATGGATAATCCTTTTGATAGGACAGTATTGAGTTGCTATTAAGCTTTCAGAAACAATTTCTTATTTTTTGATACTAAGAAGTATTGTCATGGATAAGTTGAAAAAAGTTTGAGGGTAAACGGACTTTAGATCAGGATGTCCTAATAATATCTAGCACGGAAGGCACACTAAGGGGTTCGATATATTGAATTTAGAGGTTGGAGTGAAATGAGGTAAAACGCCCCAGGCGTCATCCACACACATTCATACAAAAGAAAAAAAAATATTCCTCCTGAAACACTACAACATTTAACAATATGGTGAAGTGAAGCCCAGATTCTGTGATGACTATTGAACTCCATTTCACAACTAGATTGAAGGGAGCCATTTTCTGTAGATATTTCAAAACATCTAATGTTTGAAGCTAAAAGGCTCCATTATTTACTCATGTTTTCTGAATTATGAAGGCACTACTGAAAATGGGCATTCGTG</genome_strand>
        <mrna_strand>GCACGAGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCCACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG................................................................................................................ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG......................................................................................................ACCTTGGAGAATTCAACAGGTTTCTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACTGAAAATGGGCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699362" ref_strand="+" ref_description="SGN-E699362 [FA09DB01]">
      <seq>caccatttaatctatgaaatagtgtataagctattgtacacaacctttatcttatgctacacctgattcgcgaaagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttccaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaaagagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggccagtccttgtttgtgctctaatcttcatcctaccaacaacaatcgcattacgattcatcatcccccagcggagaacagaaaacgaccctattattataaagtccactgatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79700" stop="80747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79997" g_stop="80448" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E699362" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79997" e_stop="80448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATAGAATCTATGAAATAGTGTATAAGCTATTGTACACAA-CTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGT</genome_strand>
        <mrna_strand>CACCATTTAATCTATGAAATAGTGTATAAGCTATTGTACACAACCTTTATCTTATGCTACACCTGATTCGCGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCCAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCCAGTCCTTGTTTGTGCTCTAATCTTCATCCTACCAACAACAATCGCATTACGATTCATCATCCCCCAGCGGAGAACAGAAAACGACCCTATTATTATAAAGTCCACTGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699649" ref_strand="+" ref_description="SGN-E699649 [FA10DC02]">
      <seq>catttaatctatgaaatagtgtataagctattgtacacaactttatcttatgctacacctgattcgtgaaagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaaagagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcagcgcggagaaacggataaatttcttagaacaactgctgaacagagtaactctgagcaacagcttggatttttggaaaatttgatgctaattatttatcagatttgtgcaggtgctgttatgctgacagatattgtcttttggtgtctattgctcccatttatgacgggtgaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79700" stop="81848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80000" g_stop="80581" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="616" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80937" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="766" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81472" g_stop="81548" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="843" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E699649" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80000" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80937"/>
          <exon e_start="81472" e_stop="81548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAATCTATGAAATAGTGTATAAGCTATTGTACACAACTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTT</genome_strand>
        <mrna_strand>CATTTAATCTATGAAATAGTGTATAAGCTATTGTACACAACTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253699" ref_strand="+" ref_description="SGN-E253699 [cLEG-32-A5]">
      <seq>tttatcttatgctacaccctgattccgtgaaagagtcggatcacaagaatctatcgtacacagttttattataccgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgccaaccagtcatcctgttgatttttccatggcctgtatacctctactagctctgttctacttctattttccatcaacctaaaacaaagagagaaacagagatgtctgccttgggtttagactacctggcttcaatggcaagtctttgtttgtgctctaatcttcatcatacccaacacaatcgcattaagattcatcatcaaccagcggagaaaagaaaaccaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccctcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79741" stop="80883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80041" g_stop="80581" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80674" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="553" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253699" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80041" e_stop="80581"/>
          <exon e_start="80669" e_stop="80674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTATGCTACAC-CTGATT-CGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATA-CGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATA-CTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAA-CTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTA-CTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGAC</genome_strand>
        <mrna_strand>TTTATCTTATGCTACACCCTGATTCCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACCGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCCAACCAGTCATCCTGTTGATTTTTCCATGGCCTGTATACCTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACCTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACCTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCCAACACAATCGCATTAAGATTCATCATCAACCAGCGGAGAAAAGAAAACCAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCCTCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262469" ref_strand="+" ref_description="SGN-E262469 [cLEG-56-B4]">
      <seq>ttatcttatgctacacctgattcgtgaaagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggntgtatacnacgaatcagcgcggagaaacggataaatttcttagaaacactgctgaacagagtaaactctgagcacagcttggatttttggaaaatttgatgctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79742" stop="81228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80042" g_stop="80581" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="574" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80928" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="715" r_length="141" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E262469" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80042" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGT-AACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATT</genome_strand>
        <mrna_strand>TTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGNTGTATACNACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAAACACTGCTGAACAGAGTAAACTCTGAGC-ACAGCTTGGATTTTTGGAAAATTTGATGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255093" ref_strand="+" ref_description="SGN-E255093 [cLEG-31-L19]">
      <seq>ttatcttatgctacacctgattcgtgaaagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79742" stop="81108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80042" g_stop="80581" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="574" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80808" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="595" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E255093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80042" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCC</genome_strand>
        <mrna_strand>TTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258500" ref_strand="+" ref_description="SGN-E258500 [cLEG-47-E7]">
      <seq>ttatcttatgctacacctgattcgtgaaagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactggtggtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79742" stop="80849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80042" g_stop="80549" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E258500" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80042" e_stop="80549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAAC</genome_strand>
        <mrna_strand>TTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGGTGGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745964" ref_strand="+" ref_description="SGN-E745964 [GI|47105438]">
      <seq>gacacctgattcgtgaaagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaaagagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcagcgcggagaaacggataaatttcttagaacaactgctgaacagagtaactctgagcaacagcttggatttttggaaaatttgatgctaattatttatcagatttgtgcaggtgctgttatgctgacagatattgtcttttggtgtctattgctcccatttatgacgggtgaaaattttaagctcaccctgctgattggattaatgcactctgtaaatgctgtatttcttcttcttgattcagtcctgagcaatcttgtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctctggttcacatcccctgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttaggtcgtattactgagcttcctgttgtttatagaaagtgtcatgttcaatttctaaaacttcaagaatgtagttcttggttatataggagtactataggataacacggtcacacatagtttagaccagtggtgttcactattatgtatcgaaacataactattttacttacttttcgataaaggatgttcaaatcactctatgtggatatataacactcatggaaatggcatgcccctcacaaatgcatgcgcctttgttttgctaacgtatcgtatcgtccatcttatggcagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcaaataaaacttcaacactaatatggtgcctcttttggctgtcatgagattgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79754" stop="83660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80053" g_stop="80581" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="563" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80937" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="713" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81472" g_stop="81561" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="803" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82269" g_stop="82334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="869" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82335" i_stop="82636" i_length="302">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="917" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82764" g_stop="83360" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1514" r_length="597" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1515" polyA_stop="1528"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E745964" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1514</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80053" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80937"/>
          <exon e_start="81472" e_stop="81561"/>
          <exon e_start="82269" e_stop="82334"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="83360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTGGTGAGTTCATCTTCATTTAGTTCAAGTTTTTAGAAATGATATAGAAGCATCTTTCCATGTCAAAAGTTCACTATAACAGTTTGCATCATGTTCCATCTAAGATAGTCTGGATTGTGTACCGAATCGTTGTTAATAGTAATCAGTAATCAGAGATCAAAGGAGTTTGATAAACTCACCAAGCTCCCGCAGAACACTTAAAAAAGTGTGTGATGATAGTCCTTTCTACTCATTGAAGACCTTACGCCATTCATTAAGCCAGAAAAAGACGGGGGAGGTCATAAAGAGGGTGGGGAGAAACAGGAAAGGACAGGTGAATTCAGCTACGAAAATGGCATTTGCATGAGAAAGTTTGGATGACCACAATGCTTTTGTTCCTCAACGTCCTTAAGGAACATATTTGTTCTCATCTTAGAACATCGAGCGTAGTTACTAGCTAATTGTGATCTAACCTTTTAATCAGCTAAGAGTAAGGAAACAAGTTGATCTCCCTTTTAAAATCTTACGGAAAAACTTGTGATTATTGCTCTTAAACAGTGAAGAGAGGGAGGAATCGTGATGGTGGGATAAGAATCCATTTCTTTGTTAGCTCAATATGTAACTTTACAAAGTGAAAGCAAAAGGAACTCTACTAGTTATTCTAATCGTTGAAATTGCAGTTTATCTACTCAACTAGTTGTTGTAACTGTGAACTTTTGTTGTCATGGCAGCTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTTGTAAGTGCAACAGTTTCTCCCATCCCTAACTCCCATAAGTTTTTCGGAGTTCCTTACAATGCTTGCTATAAGTAGTCAAATTCCGTAAGCCTAATATGAGACAACTGTTTTGTGTTTCAGCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</genome_strand>
        <mrna_strand>GACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT..............................................................................................................................................................................................................................................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253592" ref_strand="+" ref_description="SGN-E253592 [cLEG-32-A15]">
      <seq>gtttcctgattcttgaaagagtcggatcacaagaatctatcgtgccagttttattatgcgtttcttccacaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgtagatttttccatggcctgtgtactctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79757" stop="80545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80053" g_stop="80245" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253592" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80053" e_stop="80245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACT</genome_strand>
        <mrna_strand>GTTTCCTGATTCTTGAAAGAGTCGGATCACAAGAATCTATCGTGC-CAGTTTTATTATGCGTTTCTTCCACAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTAGATTTTTCCATGGCCTGTGTACTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689473" ref_strand="+" ref_description="SGN-E689473 [t3_tus_84_P18]">
      <seq>cattaaagagtcggatcacaagaatctatcgtacacagttctattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcagcgcggagaaacggataaatttcttaaaacaactgctgaacagagtaactctgagcaacagcttggatttttggaaaatttgatgctaattatttatcagatttgtgccggtgctgttatgctgacagattttgtctttttggtgtctattgcttccatttatgacgggtgaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79764" stop="81848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80064" g_stop="80581" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="552" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80937" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="702" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81472" g_stop="81548" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="780" r_length="78" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E689473" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80064" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80937"/>
          <exon e_start="81472" e_stop="81548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTC-TTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTT</genome_strand>
        <mrna_strand>CATTAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTCTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAAAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCCGGTGCTGTTATGCTGACAGATTTTGTCTTTTTGGTGTCTATTGCTTCCATTTATGACGGGTGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334436" ref_strand="+" ref_description="SGN-E334436 [cTOD-23-G7]">
      <seq>aagagtcggatcacaagaatctatcgtacacagttttattatacgtttcttcgagaggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79769" stop="80835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80069" g_stop="80535" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E334436" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80069" e_stop="80535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATC</genome_strand>
        <mrna_strand>AAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296352" ref_strand="+" ref_description="SGN-E296352 [cLET-19-N10]">
      <seq>cagaaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaaagagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79849" stop="80747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80149" g_stop="80447" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E296352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80149" e_stop="80447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTG</genome_strand>
        <mrna_strand>CAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250815" ref_strand="+" ref_description="SGN-E250815 [cLEG-13-K3]">
      <seq>aaatggcaactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttgcatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctctagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79852" stop="80883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80152" g_stop="80581" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80679" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="441" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E250815" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80152" e_stop="80581"/>
          <exon e_start="80669" e_stop="80679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTG</genome_strand>
        <mrna_strand>AAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTGCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTCTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323746" ref_strand="+" ref_description="SGN-E323746 [cTOC-5-D11]">
      <seq>aactaccaaccaatcttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79859" stop="81102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80159" g_stop="80581" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="457" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80802" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="472" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E323746" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80159" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATA</genome_strand>
        <mrna_strand>AACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244992" ref_strand="+" ref_description="SGN-E244992 [cLEF-2-B4]">
      <seq>ttaacttatcggttgtggtatgcctgcaaacgagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcagcgcggagaaacggataaatttcttagaacaactgctgaacagagtaactctgagcaacagcttggatttttggaaaatttgatgctaattatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79874" stop="81234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80174" g_stop="80581" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="442" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80934" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="589" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E244992" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80174" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTAT</genome_strand>
        <mrna_strand>TTAACTTATCGGTTGTGGTATGCCTGCAAACGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253180" ref_strand="+" ref_description="SGN-E253180 [cLEG-26-I10]">
      <seq>taacttatcggttgtggtttgcctgcaatttagtcatcctgttgatttggccatggccggtgtactctaggagctctggggtacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaaccaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctctagagcttccgctttagttgctatggcttttatgatttatcacactgttgttaacttacgattcttcgtcttcctattctacacactatggacatttgctttagtttgggatctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79875" stop="80999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80175" g_stop="80581" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80699" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="439" r_length="32" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253180" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80175" e_stop="80581"/>
          <exon e_start="80669" e_stop="80699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAG-TTGGGATCTATTTT</genome_strand>
        <mrna_strand>TAACTTATCGGTTGTGGTTTGCCTGCAATTTAGTCATCCTGTTGATTTGGCCATGGCCGGTGTACTCTAGGAGCTCTGGGGTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACCAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTCTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCACACTGTTGTTAACTTACGATTCTTCGTCTTCCTATTCTACACACT.......................................................................................ATGGACATTTGCTTTAGTTTGGGATCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367691" ref_strand="+" ref_description="SGN-E367691 [cLPT-14-F18]">
      <seq>cgagttttattttatatttctgagagtggctattttcaaaagcttgagtttcagaaatggcaactaccaaccaatcttgttaatttttccatggcctgtctactctactagctctgttctacttgtattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctacatcctatttggcttctcagctttagagcttccgcttctgttgctatggcttttatgctttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79800" stop="80835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80175" g_stop="80535" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="399" r_length="361" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E367691" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80175" e_stop="80535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATC</genome_strand>
        <mrna_strand>AAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTGTTAATTTTTCCATGGCCTGTCTACTCTACTAGCTCTGTTCTACTTGTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTACATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTCTGTTGCTATGGCTTTTATGCTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291450" ref_strand="+" ref_description="SGN-E291450 [cLET-2-G24]">
      <seq>cctgcaaaagagtcatcctgttgatttttccatggcctgtatactctactagctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcagcgcggagaaacggataaatttcttagaacaactgctgaacagagtaactctgagcaacagcttggatttttggaaaatttgatgctaattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79896" stop="81233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80196" g_stop="80581" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="420" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80933" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="566" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E291450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80196" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTA</genome_strand>
        <mrna_strand>CCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265742" ref_strand="+" ref_description="SGN-E265742 [cLEI-11-I10]">
      <seq>ctctgttctacttctattttccatcaactaaaacaaagagagaaacagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatattcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaacgaacctattattataaagtcgactgatctgtggatcccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttagttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcagcgcggagaaacggataaatttcttagaacaactgctgaacagagtaactctgagcaacagcttggatttttggaaaatttgatgctaattatttatcagatttgtgcaggtgctgttatgctgacagatattgtcttttggtgtctattgctcccatttatgacgggtgaaaattttaagctcaccctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79948" stop="81864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80248" g_stop="80581" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="368" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80937" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="518" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81472" g_stop="81561" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="608" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E265742" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80248" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80937"/>
          <exon e_start="81472" e_stop="81561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG</genome_strand>
        <mrna_strand>CTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATATTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689548" ref_strand="+" ref_description="SGN-E689548 [LH_Ea01D02]">
      <seq>cctttatcgcgccgaattcggcacgaggaaaacaaagagaccattagagatgtctgccttgggtttagactactggcttcaatggcaagtctttgtttgtgctctaatcttcatcataccaacaacaatcgcattaagattcatcatcaacaagcggagaaaagaaaaccaacctattattataaagtcgactgatctgtggattccctgttggagaaatctccatcctatttggcttctcagctttagagcttccgctttagttgctatggcttttatgatttatcagactgttgttaacttaggattcttcgtcttcctattctacacacaatggacatttgctttacttgggatctattttgcgctgggaacttttatatcggcccggggatgctggttgtatacaacgaatcccctctctcagcgcggagaaacagataaatttcttagaacaattgctgaacagaataactctgagcaacagcttggatttttggaaaatttgatgctaattatttatcagatttgtgcaggtgctgttatgctgacagatattgttttttggtgtctattgctcccatttatgacgggtgaaaattttaagctccccctgctaattggattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79969" stop="81868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80276" g_stop="80581" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="333" r_length="306" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80669" g_stop="80702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="367" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80788" g_stop="80937" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="526" r_length="159" r_score="0.860"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81472" g_stop="81561" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="616" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E689548" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80276" e_stop="80581"/>
          <exon e_start="80669" e_stop="80702"/>
          <exon e_start="80788" e_stop="80937"/>
          <exon e_start="81472" e_stop="81561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACAGTACTTCTTCCTTCTCCACTTTATTGTTTTTTATTCAGTAAAATTTACTAATTCTCAACTGATTCGATATTCTAAATTGTTTTTCAGATGGACATTTGCTTTAGTTGGGATCTATTTTGCGGTATTAATCTTACAGCTTGTTTGTTTGTTTTTTCCTCCTATTTCAAGTGGTTTAAAACTGATGATTATAATGTGTTCTGTTGCAGCTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAA---------TCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG</genome_strand>
        <mrna_strand>GAAAACAAAGAGACCATTAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACCAACCTATTATTATAAAGTCGACTGATCTGTGGATTCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA.......................................................................................ATGGACATTTGCTTTACTTGGGATCTATTTTGCG.....................................................................................CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCCCCTCTCTCAGCGCGGAGAAACAGATAAATTTCTTAGAACAATTGCTGAACAGAATAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTTTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539977" ref_strand="-" ref_description="SGN-E539977 [TUS-60-A6]">
      <seq>atttttggaaaatttgatgctaattatttatcaggttagcattcgaaaatgtcaaatttggatgtttttaacaaattttcctacctctgagaagttgggggagcttaacttgttcaacaagtttgaaaggaaggatttgtcttgatggtgaatggactaaatgaatttgtctgcctaatcgcattaacaacgattaattcagcaatcacagcaaatttgtgcaggtgctgttatgctgacagatattgtcttttggtgtctattgctcccatttatgacgggtgaaaattttaagctcaccctgctgattggattaatgcactctgtaaatgctgtatttcttcttcttgattcagtcctgagcaatcttcaatttacttggtttggtatcacttattttatactatggagctgttcttatattgttttccagtggagtctacatgtgtgctgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctctggttcacatcccctgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcaaataaaacttcaacactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80604" stop="83624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80904" g_stop="81117" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81118" i_stop="81471" i_length="354">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81472" g_stop="81561" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="304" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82269" g_stop="82334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="370" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82455" g_stop="82546" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="462" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="510" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82764" g_stop="82871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="618" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83164" g_stop="83321" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="776" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="792"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E539977" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539977" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80904" e_stop="81117"/>
          <exon e_start="81472" e_stop="81561"/>
          <exon e_start="82269" e_stop="82334"/>
          <exon e_start="82455" e_stop="82546"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="82871"/>
          <exon e_start="83164" e_stop="83321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTGGTGAGTTCATCTTCATTTAGTTCAAGTTTTTAGAAATGATATAGAAGCATCTTTCCATGTCAAAAGTTCACTATAACAGTTTGCATCATGTTCCATCTAAGATAGTCTGGATTGTGTACCGAATCGTTGTTAATAGTAATCAGTAATCAGAGATCAAAGGAGTTTGATAAACTCACCAAGCTCCCGCAGAACACTTAAAAAAGTGTGTGATGATAGTCCTTTCTACTCATTGAAGACCTTACGCCATTCATTAAGCCAGAAAAAGACGGGGGAGGTCATAAAGAGGGTGGGGAGAAACAGGAAAGGACAGGTGAATTCAGCTACGAAAATGGCATTTGCATGAGAAAGTTTGGATGACCACAATGCTTTTGTTCCTCAACGTCCTTAAGGAACATATTTGTTCTCATCTTAGAACATCGAGCGTAGTTACTAGCTAATTGTGATCTAACCTTTTAATCAGCTAAGAGTAAGGAAACAAGTTGATCTCCCTTTTAAAATCTTACGGAAAAACTTGTGATTATTGCTCTTAAACAGTGAAGAGAGGGAGGAATCGTGATGGTGGGATAAGAATCCATTTCTTTGTTAGCTCAATATGTAACTTTACAAAGTGAAAGCAAAAGGAACTCTACTAGTTATTCTAATCGTTGAAATTGCAGTTTATCTACTCAACTAGTTGTTGTAACTGTGAACTTTTGTTGTCATGGCAGCTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTTGTAAGTGCAACAGTTTCTCCCATCCCTAACTCCCATAAGTTTTTCGGAGTTCCTTACAATGCTTGCTATAAGTAGTCAAATTCCGTAAGCCTAATATGAGACAACTGTTTTGTGTTTCAGCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTA</genome_strand>
        <mrna_strand>ATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAA..................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT........................................................................................................................CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG....................................................................................................................................................................................................................................................................................................TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E557068" ref_strand="+" ref_description="SGN-E557068 [cTSD-3-H17]">
      <seq>tgctaattatttatcagatttgtgcaggtgctgttatgctgacagatattgtcttttggtgtctattgctcccatttatgacgggtgaaaattttaagctcaccctgctgattggattaatgcactctgtaaatgctgtatttcttcttcttgattcagtcctgagcaatcttcaatttacttggtttggtatcacttattttatactatggagctgttcttatattgttttccagtggagtctacatgtgtgctgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctctggttcacatcccctgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttaggtcgtattactgagcttcctgttgtttatagaaagtgtcatgttcaatttctaaaacttcaagaacgtagttcttggttatataggagtactataggataacacggtcacacatagtttagaccagtggtgttcactattatgtatcgaaacataactattttacttacttttcgataaaggatgttcaaatcnnaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80621" stop="83364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80921" g_stop="80937" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81472" g_stop="81561" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="107" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82269" g_stop="82334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="173" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82455" g_stop="82546" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="265" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="313" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82764" g_stop="83061" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="611" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="664"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E557068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80921" e_stop="80937"/>
          <exon e_start="81472" e_stop="81561"/>
          <exon e_start="82269" e_stop="82334"/>
          <exon e_start="82455" e_stop="82546"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="83061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAAGTAAACGATAGCTCTTAGAGTCTGTAAAAGTCTCATATTGATTGGGGAATCGTTTGGTGGCCTCTTATATGGAATTGGGCAACCCTCCTGTCATAAGCTAGCTTTTGAGGTTGAGTTAGACCCAATATCAATCTTTACATGATATCAAAGTGAGGTTAATTTCTGTTTGGACTCCCCGTTCACGCTCCTGGGCGTGAAGGGGGTGTTAGAGTGGGTAAAAAACTTAGTCTCTTTACATGAACTTGGGCAATCCTCCATCTTTACAATATCTATAACATGTTTTCATTTGATCAGCTTATATGAATTTGGTATTACAACTTTTGACTCGAGTTTATTGTTTTGTTTTTCCTACAGATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTGGTGAGTTCATCTTCATTTAGTTCAAGTTTTTAGAAATGATATAGAAGCATCTTTCCATGTCAAAAGTTCACTATAACAGTTTGCATCATGTTCCATCTAAGATAGTCTGGATTGTGTACCGAATCGTTGTTAATAGTAATCAGTAATCAGAGATCAAAGGAGTTTGATAAACTCACCAAGCTCCCGCAGAACACTTAAAAAAGTGTGTGATGATAGTCCTTTCTACTCATTGAAGACCTTACGCCATTCATTAAGCCAGAAAAAGACGGGGGAGGTCATAAAGAGGGTGGGGAGAAACAGGAAAGGACAGGTGAATTCAGCTACGAAAATGGCATTTGCATGAGAAAGTTTGGATGACCACAATGCTTTTGTTCCTCAACGTCCTTAAGGAACATATTTGTTCTCATCTTAGAACATCGAGCGTAGTTACTAGCTAATTGTGATCTAACCTTTTAATCAGCTAAGAGTAAGGAAACAAGTTGATCTCCCTTTTAAAATCTTACGGAAAAACTTGTGATTATTGCTCTTAAACAGTGAAGAGAGGGAGGAATCGTGATGGTGGGATAAGAATCCATTTCTTTGTTAGCTCAATATGTAACTTTACAAAGTGAAAGCAAAAGGAACTCTACTAGTTATTCTAATCGTTGAAATTGCAGTTTATCTACTCAACTAGTTGTTGTAACTGTGAACTTTTGTTGTCATGGCAGCTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTTGTAAGTGCAACAGTTTCTCCCATCCCTAACTCCCATAAGTTTTTCGGAGTTCCTTACAATGCTTGCTATAAGTAGTCAAATTCCGTAAGCCTAATATGAGACAACTGTTTTGTGTTTCAGCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAA</genome_strand>
        <mrna_strand>TGCTAATTATTTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT........................................................................................................................CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAACGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288525" ref_strand="-" ref_description="SGN-E288525 [cLES-8-H8]">
      <seq>gtctattgctcccatttatgacgggtgaaaattttaagctcaccctgctgattggattaatgcactctgtaaatgctgtatttcttcttcttgattcagtcctgagcaatcttcaatttacttggtttggtatcacttattttatactatggagctgttcttatattgttttccagtggagtctacatgtgtgctgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctctggttcacatcccctgttatggactatacgagtttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcaaataaaacttcaacactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81215" stop="83624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81515" g_stop="81561" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82269" g_stop="82334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="113" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82455" g_stop="82546" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="205" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="253" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82764" g_stop="82871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="362" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83164" g_stop="83321" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="520" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="535"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E288525" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81515" e_stop="81561"/>
          <exon e_start="82269" e_stop="82334"/>
          <exon e_start="82455" e_stop="82546"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="82871"/>
          <exon e_start="83164" e_stop="83321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTGGTGAGTTCATCTTCATTTAGTTCAAGTTTTTAGAAATGATATAGAAGCATCTTTCCATGTCAAAAGTTCACTATAACAGTTTGCATCATGTTCCATCTAAGATAGTCTGGATTGTGTACCGAATCGTTGTTAATAGTAATCAGTAATCAGAGATCAAAGGAGTTTGATAAACTCACCAAGCTCCCGCAGAACACTTAAAAAAGTGTGTGATGATAGTCCTTTCTACTCATTGAAGACCTTACGCCATTCATTAAGCCAGAAAAAGACGGGGGAGGTCATAAAGAGGGTGGGGAGAAACAGGAAAGGACAGGTGAATTCAGCTACGAAAATGGCATTTGCATGAGAAAGTTTGGATGACCACAATGCTTTTGTTCCTCAACGTCCTTAAGGAACATATTTGTTCTCATCTTAGAACATCGAGCGTAGTTACTAGCTAATTGTGATCTAACCTTTTAATCAGCTAAGAGTAAGGAAACAAGTTGATCTCCCTTTTAAAATCTTACGGAAAAACTTGTGATTATTGCTCTTAAACAGTGAAGAGAGGGAGGAATCGTGATGGTGGGATAAGAATCCATTTCTTTGTTAGCTCAATATGTAACTTTACAAAGTGAAAGCAAAAGGAACTCTACTAGTTATTCTAATCGTTGAAATTGCAGTTTATCTACTCAACTAGTTGTTGTAACTGTGAACTTTTGTTGTCATGGCAGCTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTTGTAAGTGCAACAGTTTCTCCCATCCCTAACTCCCATAAGTTTTTCGGAGTTCCTTACAATGCTTGCTATAAGTAGTCAAATTCCGTAAGCCTAATATGAGACAACTGTTTTGTGTTTCAGCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAG-TTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTA</genome_strand>
        <mrna_strand>GTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT........................................................................................................................CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG....................................................................................................................................................................................................................................................................................................TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253009" ref_strand="-" ref_description="SGN-E253009 [cLEG-25-F12]">
      <seq>atttatgacgggtgaaaattttaagctcaccctgctgattggattaatgcactctgtaaatgctgtatttcttcttcttgattcagtcctgagcaatcttcaatttacttggtttggtatcacttattttatactatggagctgttcttatattgttttccagtggagtctacatgtgtgctgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctgtggttcacatcccctgttatggactagacgagttgcttatagaagcgaaagcccaaatattctcaagattgtttccacaggcatttcttagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcatcaaaaaaaactccaacactaatatggtgccaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81228" stop="83631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81528" g_stop="81561" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82269" g_stop="82334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="100" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82455" g_stop="82546" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="192" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="240" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82764" g_stop="82871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="348" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83164" g_stop="83304" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="489" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="532"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253009" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253009" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81528" e_stop="81561"/>
          <exon e_start="82269" e_stop="82334"/>
          <exon e_start="82455" e_stop="82546"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="82871"/>
          <exon e_start="83164" e_stop="83304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGACGGGTGAAAATTTTAAGCTCACCCTGGTGAGTTCATCTTCATTTAGTTCAAGTTTTTAGAAATGATATAGAAGCATCTTTCCATGTCAAAAGTTCACTATAACAGTTTGCATCATGTTCCATCTAAGATAGTCTGGATTGTGTACCGAATCGTTGTTAATAGTAATCAGTAATCAGAGATCAAAGGAGTTTGATAAACTCACCAAGCTCCCGCAGAACACTTAAAAAAGTGTGTGATGATAGTCCTTTCTACTCATTGAAGACCTTACGCCATTCATTAAGCCAGAAAAAGACGGGGGAGGTCATAAAGAGGGTGGGGAGAAACAGGAAAGGACAGGTGAATTCAGCTACGAAAATGGCATTTGCATGAGAAAGTTTGGATGACCACAATGCTTTTGTTCCTCAACGTCCTTAAGGAACATATTTGTTCTCATCTTAGAACATCGAGCGTAGTTACTAGCTAATTGTGATCTAACCTTTTAATCAGCTAAGAGTAAGGAAACAAGTTGATCTCCCTTTTAAAATCTTACGGAAAAACTTGTGATTATTGCTCTTAAACAGTGAAGAGAGGGAGGAATCGTGATGGTGGGATAAGAATCCATTTCTTTGTTAGCTCAATATGTAACTTTACAAAGTGAAAGCAAAAGGAACTCTACTAGTTATTCTAATCGTTGAAATTGCAGTTTATCTACTCAACTAGTTGTTGTAACTGTGAACTTTTGTTGTCATGGCAGCTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTTGTAAGTGCAACAGTTTCTCCCATCCCTAACTCCCATAAGTTTTTCGGAGTTCCTTACAATGCTTGCTATAAGTAGTCAAATTCCGTAAGCCTAATATGAGACAACTGTTTTGTGTTTCAGCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAA</genome_strand>
        <mrna_strand>ATTTATGACGGGTGAAAATTTTAAGCTCACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT........................................................................................................................CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTGTGGTTCACATCCCCTGTTATGGACTAGACGAGTTGCTTATAGAAGCGAAAGCCCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG....................................................................................................................................................................................................................................................................................................TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219396" ref_strand="+" ref_description="SGN-E219396 [cLEL-11-J9](-)">
      <seq>tcaatttacttggtttggtatcacttattttatactatggagctgttcttatattgttttccagtggagtctacatgtgtgctgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctctggttcacatccccntgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcatcaaataaaacttcaacactaatatggtgcctcttttggctgtcatgagattgctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82155" stop="83660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82454" g_stop="82546" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="141" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82764" g_stop="82871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="250" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83164" g_stop="83360" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="450" r_length="200" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="468"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E219396" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82454" e_stop="82546"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="82871"/>
          <exon e_start="83164" e_stop="83360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCC-TGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATAT---CAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</genome_strand>
        <mrna_strand>TCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCNTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG....................................................................................................................................................................................................................................................................................................TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219646" ref_strand="+" ref_description="SGN-E219646 [cLEL-11-J10](-)">
      <seq>gttttccagtggagtctacatgtgtgctgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtattttggcatggctctggttcacatcccctgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcatcaaataaaacttcaacactaatatggtgcctcttttggctgtcataagattgctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82209" stop="83660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82509" g_stop="82546" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82637" g_stop="82684" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="86" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82764" g_stop="82871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="194" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83164" g_stop="83360" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="394" r_length="200" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="412"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E219646" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82509" e_stop="82546"/>
          <exon e_start="82637" e_stop="82684"/>
          <exon e_start="82764" e_stop="82871"/>
          <exon e_start="83164" e_stop="83360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATAT---CAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</genome_strand>
        <mrna_strand>GTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG....................................................................................................................................................................................................................................................................................................TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATAAGATTGCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713508" ref_strand="+" ref_description="SGN-E713508 [FB08DD01]">
      <seq>cgtgttgcttatcttggtggccgtatcctttcttggaacttaacactccatgggcaccattgtggtaataacatgctatctatgttcaccttctctacttctttacgatttgaatacatcctaaaacgggcagttggtttcaggtattttggcatggctctggttcacatcccctgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttaggtcgtattactgagcttcctgttgtttatagaaagtgtcatgttcaatttctaaaacttcaagaatgtagttcttggttatataggagtactataggataacacggtcacacatagtttagaccagtggtgttcactattatgtatcgaaacataactattttacttacttttcgataaaggatgttcaaatcactctatgtggatatataacactcatggaaatggcatgcccctcacaaatgcatgcgcctttgttttgctaacgtatcgtatcgtccatcttatggcagttgggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcaaataaaacttcaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82336" stop="83619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82531" g_stop="82546" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90">
            <donor d_prob="0.710" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82637" g_stop="83319" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="699" r_length="683" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E713508" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82531" e_stop="82546"/>
          <exon e_start="82637" e_stop="83319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTGCTTATCTTGGTAAATAGATACACCCATCATACGCTTGTTTTCATGTGTAAAAGACATATGTATATCGTCTATGGTTCAAAGAGTTGCGCTGTTGTGCAGGTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACAC</genome_strand>
        <mrna_strand>CGTGTTGCTTATCTTG..........................................................................................GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTTGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216385" ref_strand="+" ref_description="SGN-E216385 [cLEL-13-K22](-)">
      <seq>catgggcaccattgtggtattttggcatggctctggttcacatcccctgttatggactatacgagttgcttatcaaagcaaaagaccaaatattctcaagattgtttccacaggcatttcttagtggggttgagattgcaatggagaagaagcatacttgaggtgaggaagactataatgaagaaacaagaattcaaggtagtagttgttgtatgtataaataaatgaaattgtaataattttccacagttacaccaaatatcatcaaataaaacttcaacactaatatggtgcctcttttggctgtcatgagattgctcaccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82369" stop="83657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82669" g_stop="82684" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82764" g_stop="82871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="124" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83164" g_stop="83357" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="321" r_length="197" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="342"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E216385" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82669" e_stop="82684"/>
          <exon e_start="82764" e_stop="82871"/>
          <exon e_start="83164" e_stop="83357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATAT---CAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCA</genome_strand>
        <mrna_strand>CATGGGCACCATTGTG...............................................................................GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG....................................................................................................................................................................................................................................................................................................TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319435" ref_strand="+" ref_description="SGN-E319435 [cTOB-15-B18]">
      <seq>caaaacgtcatgcctaacatgaagagtccccacctacttacgatccgtcgccgtttcctactgcagctcagatttctctatcataacatttgccatttccagcctgcaaagcacatcaaccatagtatcatggattcacagtcgtcaccacatggctctattatcttctccaccgtcggcagaaccaattatggcttcgacatcttctccatcaaatctccattttcttttctcaattctccggtagaacatcgcctcacagacggtacctccatcaattacaacggacagtttgtcgatgaagatcaaacacttgtattcgtctcggagagatcaggtgctcctcgcatttacttgagacacccctcctctcaggtacagatggaacaacttcctactcccattgatagcctatttctcgaccgtccatttcttcgaaataaacaactctactatatttcagctcatcagcaacccaaaaaagttttcaccagctcgtccgctctttactctaccaatatagaagataatagtaacatcatccgcttgactccgtacggctgcgttgattatagtccggcgatttcgcagtctggacacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84658" stop="85860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84958" g_stop="85560" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E319435" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84958" e_stop="85560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGTCATGCCTAACGTGAAGAGTCCCCACCTACTTACGATCCGTCGCCGTTTCCTACTGCAGCTCAGATTTCTCTATCATAACATTTGCCATTTCCAGCCTGCAAAGCACATCAACCATAGTATCATGGATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGTGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTG</genome_strand>
        <mrna_strand>CAAAACGTCATGCCTAACATGAAGAGTCCCCACCTACTTACGATCCGTCGCCGTTTCCTACTGCAGCTCAGATTTCTCTATCATAACATTTGCCATTTCCAGCCTGCAAAGCACATCAACCATAGTATCATGGATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAAAAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGCGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318690" ref_strand="+" ref_description="SGN-E318690 [cTOB-9-E20]">
      <seq>caaaacgtcatgcctaacatgaagagtccccacctacttacgatccgtcgccgtttcctactgcagctcagatttctctatcataacatttgccatttccagcctgcaaagcacatcaaccatagtatcatggattcacagtcgtcaccacatggctctattatcttctccaccgtcggcagaaccaattatggcttcgacatcttctccatcaaatctccattttcttttctcaattctccggtagaacatcgcctcacagacggtacctccatcaattacaacggacagtttgtcgatgaagatcaaacacttgtattcgtctcggagagatcaggtgctcctcgcatttacttgagacacccctcctctcaggtacagatggaacaacttcctactcccattgatagcctatttctcgaccgtccatttcttcgaaataaacaactctactatatttcagctcatcagcaacccaaaaaagttttcaccagctcgtccgctctttactctaccaatatagaagataatagtaacatcatccgcttgactccgtacggctgcgttgattatagtccggcgatttcgcagtctggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84658" stop="85857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84958" g_stop="85557" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E318690" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84958" e_stop="85557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGTCATGCCTAACGTGAAGAGTCCCCACCTACTTACGATCCGTCGCCGTTTCCTACTGCAGCTCAGATTTCTCTATCATAACATTTGCCATTTCCAGCCTGCAAAGCACATCAACCATAGTATCATGGATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGTGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACAC</genome_strand>
        <mrna_strand>CAAAACGTCATGCCTAACATGAAGAGTCCCCACCTACTTACGATCCGTCGCCGTTTCCTACTGCAGCTCAGATTTCTCTATCATAACATTTGCCATTTCCAGCCTGCAAAGCACATCAACCATAGTATCATGGATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAAAAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGCGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697204" ref_strand="+" ref_description="SGN-E697204 [FA01AE05]">
      <seq>gattcacagtcgtcaccacatggctctattatcttctccaccgtcggcagaaccaattatggcttcgacatcttctccatcaaatctccattttcttttctcaattctccggtagaacatcgcctcacagacggtacctccatcaattacaacggacagtttgtcgatgaagatcaaacacttgtattcgtctcggagagatcaggtgctcctcgcatttacttgagacacccctcctctcaggtacagatggaacaacttcctactcccattgatagcctatttctcgaccgtccatttcttcgaaataaacaactctactatatttcagctcatcagcaacccaaacaaaggttcaccagctcgtccgctctttactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84790" stop="85772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85090" g_stop="85472" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E697204" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85090" e_stop="85472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTAC</genome_strand>
        <mrna_strand>GATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAAGGTTCACCAGCTCGTCCGCTCTTTACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339276" ref_strand="+" ref_description="SGN-E339276 [cTOF-4-D1]">
      <seq>gtcgatgaagatcaaacacttgtattcgtctcggagagatcaggtgctcctcgcatttacttgagacacccctcctctcaggtacagatggaacaacttcctactcccattgatagcctatttctcgaccgtccatttcttcgaaataaacaactctactatatttcagctcatcagcaacccaaaaaagttttcaccagctcgtccgctctttactctaccaatatagaagataatagtaacatcatccgcttgactccgtacggctgcgttgattatagtccggcgatttcgcagtctggacacctgattgcggttgcatcttacggagaccgtcgttggcctactggtgaattccatgatctgactactgatattgttgttttccctgaatctgacccagaaaagcggatagttgtgtgccaacacggtggctggccaacttggtctggtgattcgactatctattttcaccgacaagctgatgatggttggtggagcatttttagagtagatttgcttgaagattcactcaatctgcgtactgatccgattcgagttactcctcctggtgtgcattgctttactccagcggcctcacacagctccaaatcaatgattgctattgctaccagaagacaggggacgaagtatcgccacattgagattttcgatgtggagtctcacaagttctattcggtgaccgagttgcttaaccctaccactcaccattacagtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84952" stop="86294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85252" g_stop="85994" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E339276" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85252" e_stop="85994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGTGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTGATTGCGGTTGCATCGTACGGAGACCGTCGTTGGCCTACTGGTGAATTCCATGATCTGACTACTGATATTGTTGTTTTCCCTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATT</genome_strand>
        <mrna_strand>GTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAAAAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGCGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTGATTGCGGTTGCATCTTACGGAGACCGTCGTTGGCCTACTGGTGAATTCCATGATCTGACTACTGATATTGTTGTTTTCCCTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254741" ref_strand="+" ref_description="SGN-E254741 [cLEG-33-C5]">
      <seq>ttcctactcccattgatagcctatttctcgaccgtccatttcttcgaaataaacaactctactatatttcagctcatcagcaacccaaaaaagttttcaccagctcgtccgctctttactctaccaatatagaagataatagtaacatcatccgcttgactccgtacggctgcgttgattatagtccggcgatttcgcagtctggacacctgattgcggttgcatcttacggagaccgtcgttggcctactggtgaattccatgatctgactactgatattgttgttttccctgaatctgacccagaaaagcggatagttgtgtgccaacacggtggctggccaacttggtctggtgattcgactatctattttcaccgacaagctgatgatggttggtggagcatttttagagtagatttgcttgaagattcactcaatctgcgtactgatccgattcgagttactcctcctggtgtgcattgctttactccagcggcctcacacagctccaaatcaatgattgctattgctaccagaagacaggggacgaagtatcgccacattgagattttcgatgtggagtctcacaagttctattcggtgaccgagttgcttaaccctaccactcaccattacagtccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85049" stop="86295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85349" g_stop="85995" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E254741" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85349" e_stop="85995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGTGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTGATTGCGGTTGCATCGTACGGAGACCGTCGTTGGCCTACTGGTGAATTCCATGATCTGACTACTGATATTGTTGTTTTCCCTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTC</genome_strand>
        <mrna_strand>TTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAAAAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGCGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTGATTGCGGTTGCATCTTACGGAGACCGTCGTTGGCCTACTGGTGAATTCCATGATCTGACTACTGATATTGTTGTTTTCCCTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306737" ref_strand="+" ref_description="SGN-E306737 [cLEY-19-D3]">
      <seq>ctgaatctgacccagaaaagcggatagttgtgtgccaacacggtggctggccaacttggtctggtgattcgactatctattttcaccgacaagctgatgatggttggtggagcatttttagagtagatttgcttgaagattcactcaatctgcgtactgatccgattcgagttactcctcctggtgtgcattgctttactccagcggcctcacacagctgcaaatcaatgattgctattgctaccagaagacaggggacgaagtatcgccacattgagattttcgatgtggagtctcacaagttctattcggtgaccgagttgcttaaccctaccactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85340" stop="86281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85640" g_stop="85981" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E306737" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85640" e_stop="85981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACC</genome_strand>
        <mrna_strand>CTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTGCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698503" ref_strand="-" ref_description="SGN-E698503 [FA06CC07]">
      <seq>acatgtcagttgtctcaacccactcccatccaacttcaccaaatataagtcacggtagggttggtattggtttggcagtgacactggttctgctgttactccacccaagttgcccgtgaacagaagccattcacagtccttactaaagcatacgtggtttagcctctctttatctacttcatcagatccctctggccctgccacgtggatcctacgaagacctgtgccgtttggatgaatcacataaatgctgaagcaagtgacattatccggattgtgcctgttggaagaaaatgcaatcagctttccatcaggtgaccagcttggcattgtatcaatccatggaattgttgcatctcccgatgatgattcacctcggaaccggtgataactgagaaacgacgacttaggagagaagaatggactgtaatggtgagtggtagggttaagcaactcggtcaccgaatagaacttgtgagactccacatcgaaaatctcaatgtggcgatacttcgtcccctgtcttctggtagcaatagcaatcattgatttggagctgtgtgaggccgctggagtaaagcaatgcacaccaggaggagtaactcgaatcggatcagtacgcagattgagtgaatcttcaagcaaatctactctaaaaatgctccaccaaccatcatcagcttgtcggtgaaaatagatagtcgaatcaccagaccaagttgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87225" stop="85391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86925" g_stop="86582" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86581" i_stop="86069" i_length="513">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86068" g_stop="85687" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="726" r_length="382" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E698503" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698503" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86925" e_stop="86582"/>
          <exon e_start="86068" e_stop="85687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTCAGTTGTCTCAACCCACTCCCATCCAACTTCACCAAATATAAGTCACCGTAGGGTTGGTATTGGTTTGGCAGTGACACTGGTTCTGCTGTTACTCCACCCAAGTTGCCCGTGAACAGAAGCCATTCACAGTCCTTACTAAAGCATACGTGGTTTAGCCTCTCTTTATCTACTTCATCAGATCCCTCTGGCCCTGCCACGTGGATCCTACGAAGACCTGTGCCGTTTGGATGAATCACATAAATGCTGAAGCAAGTGACATTATCCGGATTGTGCCTGTTGGAAGAAAATGCAATCAGCTTTCCATCAGGTGACCAGCTTGGCATTGTATCAATCCATGGCCCCTCTGTTAGCTGACGAATTCCTCCACCCTCCAGCTCTCCCTTAACAGAATCCATAATATACAGATTTTTGTGCCCTGAACGGCCTGAACGGAATACAATGTGCTTTCCGTCTGGCGAGCAGGAAGGGAAGGCATTATTTCCCGTCTCCTCTTTTGTGAGAACTTCTATTTCTACTGGAATTTCTCCGCAATCATCGTTAGTTAGATTTAATGAATTGAATGAAACTCGTGCTATTTGGACAGTTGCTTTTACAGAGTCGAATACAGGTCCGATTGACGTAAAAATCACATTGGGTTCAGCTGGAGACCAGGAGTTGCAGAAAGCTGTACGGCCTCTGAACAATGTCCACTTCTTGGAACCGTCTGATTTGATGATTTTGAGGCCTGAATTAGCATTGAAATCATGATTAAACGCAATAAAGTCACCTGAGGGAGAGAAGGAAGGAAATGATCCATTAAGCCTCAGCATTCTCAGTCCTTTTTCTGGAGAAATTATCGGGGCCAAGGAAGGAATTGTTGCATCTCCCGATGATGATTCACCTCGGAACCGGTGATAACTGAGAAACGACGACTTAGGAGAGAAGAATGGACTGTAATGGTGAGTGGTAGGGTTAAGCAACTCGGTCACCGAATAGAACTTGTGAGACTCCACATCGAAAATCTCAATGTGGCGATACTTCGTCCCCTGTCTTCTGGTAGCAATAGCAATCATTGATTTGGAGCTGTGTGAGGCCGCTGGAGTAAAGCAATGCACACCAGGAGGAGTAACTCGAATCGGATCAGTACGCAGATTGAGTGAATCTTCAAGCAAATCTACTCTAAAAATGCTCCACCAACCATCATCAGCTTGTCGGTGAAAATAGATAGTCGAATCACCAGACCAAGTTGGCCA</genome_strand>
        <mrna_strand>ACATGTCAGTTGTCTCAACCCACTCCCATCCAACTTCACCAAATATAAGTCACGGTAGGGTTGGTATTGGTTTGGCAGTGACACTGGTTCTGCTGTTACTCCACCCAAGTTGCCCGTGAACAGAAGCCATTCACAGTCCTTACTAAAGCATACGTGGTTTAGCCTCTCTTTATCTACTTCATCAGATCCCTCTGGCCCTGCCACGTGGATCCTACGAAGACCTGTGCCGTTTGGATGAATCACATAAATGCTGAAGCAAGTGACATTATCCGGATTGTGCCTGTTGGAAGAAAATGCAATCAGCTTTCCATCAGGTGACCAGCTTGGCATTGTATCAATCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTTGCATCTCCCGATGATGATTCACCTCGGAACCGGTGATAACTGAGAAACGACGACTTAGGAGAGAAGAATGGACTGTAATGGTGAGTGGTAGGGTTAAGCAACTCGGTCACCGAATAGAACTTGTGAGACTCCACATCGAAAATCTCAATGTGGCGATACTTCGTCCCCTGTCTTCTGGTAGCAATAGCAATCATTGATTTGGAGCTGTGTGAGGCCGCTGGAGTAAAGCAATGCACACCAGGAGGAGTAACTCGAATCGGATCAGTACGCAGATTGAGTGAATCTTCAAGCAAATCTACTCTAAAAATGCTCCACCAACCATCATCAGCTTGTCGGTGAAAATAGATAGTCGAATCACCAGACCAAGTTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266716" ref_strand="+" ref_description="SGN-E266716 [cLEI-5-L2]">
      <seq>tggccaacttggtctggtgattcgactatctattttcaccgacaagctgatgatggttggtggagcatttttagagtagatttgcttgaagattcactcaatctgcgtactgatccgattcgagttactcctcctggtgtgcattgctttactccagcggcctcacacagctccaaatcaatgattgctattgctaccagaagacaggggacgaagtatcgccacattgagattttcgatgtggagtctcacaagttctattcggtgaccgagttgcttaaccctaccactcaccattacagtccattcttctctcctaagtcgtcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85387" stop="86627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85687" g_stop="86327" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E266716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85687" e_stop="86327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGT</genome_strand>
        <mrna_strand>TGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273229" ref_strand="+" ref_description="SGN-E273229 [cLEM-24-I15]">
      <seq>gttggtggatcatttttagagtagatttgcttgaagattcactgaatctgcgtactgatccgattcgagttactcctcctggtgtgcattgctttactccagcggcctcacacagctccaaatcaatgattgctattgctaccagaagacaggggacgaagtatcgccacattgagattttcgatgtggagtctcacaagttctattcggtgaccgagttgcttaaccctaccactcaccattacagtccattcttctctcctaagtcgtcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcaaacggttccaagaagtggacattgttcagaggccgtacagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85442" stop="86558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85742" g_stop="86258" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E273229" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85742" e_stop="86258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTT</genome_strand>
        <mrna_strand>GTTGGTGGATCATTTTTAGAGTAGATTTGCTTGAAGATTCACTGAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAAACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544779" ref_strand="+" ref_description="SGN-E544779 [TUS-67-E15]">
      <seq>cacaagttctattcggtgaccgagttgcttaaccctaccactcaccattacagtccattcttctctcctaagtcgtcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattctgttaagggagagctggaggggtggaggaattcgtcagctaacagaggggccatggattgatacaatgccaagctggtcacctgatggaaagctgattgcattttcttccaacaggcacaatccggataatgtcacttgcttcagcatttatgtgattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85636" stop="86991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85936" g_stop="86691" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E544779" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85936" e_stop="86691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGA-GGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCAT</genome_strand>
        <mrna_strand>CACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250300" ref_strand="+" ref_description="SGN-E250300 [cLEG-6-M14]">
      <seq>acaagttctattcggtgaccgatttgcttaaccctaccactcaccattacaggccattcttctctcctaagtcgtcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgggaaattctttacgtaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaatgccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcatgccgtgcagggcacaaaaatctgtatattatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85637" stop="86828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85937" g_stop="86528" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E250300" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85937" e_stop="86528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGT--G--ATT-TTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGA</genome_strand>
        <mrna_strand>ACAAGTTCTATTCGGTGACCGATTTGCTTAACCCTACCACTCACCATTACAGGCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGGGAAATTCTTTACGT-AATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATGCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCATGCCGTGCAGGGCACAAAAATCTGTATATTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253654" ref_strand="+" ref_description="SGN-E253654 [cLEG-32-M2]">
      <seq>tcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattctgttaagggagaactggagggtggaggaattcgtcagctaacagaggggccatggattgatacaatgccaagctggtcacctgatggaaagctgattgcattttcttccaacaggcacaatccggataatgtcacttgcttcagcatttatgtgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85711" stop="86990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86690" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253654" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCA</genome_strand>
        <mrna_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAACTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264523" ref_strand="+" ref_description="SGN-E264523 [cLEG-67-G12]">
      <seq>tcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85711" stop="86834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86534" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E264523" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGT</genome_strand>
        <mrna_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254654" ref_strand="+" ref_description="SGN-E254654 [cLEG-29-G16]">
      <seq>tcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85711" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86532" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E254654" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCT</genome_strand>
        <mrna_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254664" ref_strand="+" ref_description="SGN-E254664 [cLEG-29-K16]">
      <seq>tcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85711" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86532" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E254664" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCT</genome_strand>
        <mrna_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254557" ref_strand="+" ref_description="SGN-E254557 [cLEG-29-F21]">
      <seq>tcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcgggaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85711" stop="86790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86490" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E254557" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGT</genome_strand>
        <mrna_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCGGGAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256754" ref_strand="+" ref_description="SGN-E256754 [cLEG-40-P24]">
      <seq>tcgtttctcagttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctacctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85711" stop="86513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86213" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E256754" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATC</genome_strand>
        <mrna_strand>TCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTACCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731813" ref_strand="+" ref_description="SGN-E731813 [LA28BA09]">
      <seq>agttatcaccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatgctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagctgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcggagaaattccagtagaaatagaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgttcagggcacaaaaatctgtatattatggattctgttaagggagagctggagggtggaggaattcgtcagctaacagaggggccatggattgatacaatgccaagctggtcacctgatggaaagctgattgcattttcttccaacaggcacaatccggataatgtcacttgcttcagcatttatgtgattcatccaaacggcacaggtcttcgtaggatccacgtggcagggccagagggatctgatgaagtagataaagagaggctaaaccacgtatgctttagtaaggactgtgaatggcttctgttcacgggcaacttgggtggagtaacagcagaaccagtgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85720" stop="87149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86020" g_stop="86849" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E731813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86020" e_stop="86849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAGGGATCTGATGAAGTAGATAAAGAGAGGCTAAACCACGTATGCTTTAGTAAGGACTGTGAATGGCTTCTGTTCACGGGCAACTTGGGTGGAGTAACAGCAGAACCAGTGTCACT</genome_strand>
        <mrna_strand>AGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAGGGATCTGATGAAGTAGATAAAGAGAGGCTAAACCACGTATGCTTTAGTAAGGACTGTGAATGGCTTCTGTTCACGGGCAACTTGGGTGGAGTAACAGCAGAACCAGTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253932" ref_strand="+" ref_description="SGN-E253932 [cLEG-28-F5]">
      <seq>ccggttccgaggtgaatcatcatcgggagatgcaacaattccttccttggccccgataatttctccagaaaaaggactgagaatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85728" stop="86822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86028" g_stop="86522" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253932" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86028" e_stop="86522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATAT</genome_strand>
        <mrna_strand>CCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253765" ref_strand="+" ref_description="SGN-E253765 [cLEG-32-K18]">
      <seq>aatgctgaggcttaatggatcatttccttccttctctccctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcacacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccggtcaggccgtgcagggcacaaaaatctgtatattatggattctgttaacggagagctggagggtggaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85809" stop="86861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86109" g_stop="86561" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E253765" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86109" e_stop="86561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAAT</genome_strand>
        <mrna_strand>AATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCACACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGGTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAACGGAGAGCTGGAGGGTGGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391762" ref_strand="+" ref_description="SGN-E391762 [TUS-24-I20]">
      <seq>ctcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattctgttaagggagagctggagggtggaggaattcgtcagctaacagaggggccatggattgatacaatgccaagctggtcacctgatggaaagctgattgcattttcttccaacaggcacaatccggataatgtcacttgcttcagcatttatgtgattcatccaaacggcacaggtcttcgtaggatccacgtggcagggccagaaggatctgatgaagtagataaaaagaggctaaaccacgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85848" stop="87078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86148" g_stop="86778" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E391762" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86148" e_stop="86778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAGGGATCTGATGAAGTAGATAAAGAGAGGCTAAACCACGTATGC</genome_strand>
        <mrna_strand>CTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAAGGATCTGATGAAGTAGATAAAAAGAGGCTAAACCACGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247517" ref_strand="+" ref_description="SGN-E247517 [cLEF-42-O15]">
      <seq>tcaggtgactttattgcgtttaatcatgatttcaatcctaattcaggcctcaaaatcatcaaatcagacggttccaagaagtggacattgttcagaggccgtacagctttctgcaactcctggtctccagccgaacccaatgtgatttttacgtcaatcggacctgtattcgactctgtaaaagcaactgtccaaatagcacgagtttcattcaattcattaaatctaactaacgatgattgcagagaaattccagtagaaataaaagttctcacaaaagaggagacgggaaataatgccttcccttcctgctcgccagacggaaagcacattgtattccgttcaggccgtgcagggcacaaaaatctgtatattatggattctgttaagggagagctggagggtggaggaattcgtcagctaacagaggggccatggattgatacaatgccaagctggtcacctgatggaaagctgattgcattttcttccaacaggcacaatccggataatgtcacttgcttcagcatttatgtgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85849" stop="86990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86149" g_stop="86690" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E247517" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86149" e_stop="86690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCA</genome_strand>
        <mrna_strand>TCAGGTGACTTTATTGCGTTTAATCATGATTTCAATCCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCCGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCAGAGAAATTCCAGTAGAAATAAAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTGCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544778" ref_strand="+" ref_description="SGN-E544778 [TUS-67-E15](-)">
      <seq>gagctgagggtggaggattcgtcagctaacagaggggccatggattgatacaatgccaagctgtccacctgatggaaagctgattgcatttcttccaacaggcacaatccggataatgtcacttgcttcagcatttatgtgattcatccaaacggcacaggtcttcgtaggatccacgtggcagggccagagggatctgatgaagtagataaagagaggctaaaccacgtatgctttagtaaggactgtgaatggcttctgttcacgggcaacttgggtggagtaacagcagaaccagtgtcactgccaaatcaatatcaaccctacggtgacttatatttggtgaagttggatgggagtgggttgagacgactgacatgtaatgcatatgagaatggaactccggcatggcacccatcaggtacgcctatgactgctttggacatagaacggaacgttatagtaggagataagttgaggggtgaatttgatgatgtactatggatgaattgttgaggtagaacaaaagtgtccagtcaagagaaagatcaatctgaacttcaaacaggtgctattgttgttctctcattgagttcagatatcatattattcgtacgggctgacgacagaagtatctcggcaaaatgatctggtcaaggattcttgtattctattttcgggtctcttacatgttaaaataaacatctctagagagatttgatgtaaattgttatgggataaacgcaattgatcctgcaattttgaaggatcaattgctttggcatgaagtaaaagaaagaaataatgttgtgagaaaaaaaaaaaaacaaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86242" stop="87660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86542" g_stop="87353" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="813" polyA_stop="827"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E544778" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86542" e_stop="87353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAGGGATCTGATGAAGTAGATAAAGAGAGGCTAAACCACGTATGCTTTAGTAAGGACTGTGAATGGCTTCTGTTCACGGGCAACTTGGGTGGAGTAACAGCAGAACCAGTGTCACTGCCAAACCAATACCAACCCTACGGTGACTTATATTTGGTGAAGTTGGATGGGAGTGGGTTGAGACAACTGACATGTAATGCATATGAGAATGGAACTCCGGCATGGCACCCATCAGGTACGCCTATGACTGCTTTGGACATAGAACGGAACGTTATAGTAGGAGATAAGTTGAGGGGTGAATTTGATGATGTACTATGGATGAATTGTTGAGGTAGAACAAAAGTGTCCAGTCAAGAGAAAGATCAATCTGAACTTCAAACAGGTGCTATTGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTT</genome_strand>
        <mrna_strand>GAGCT-GAGGGTGGAGG-ATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGTCCACCTGATGGAAAGCTGATTGCA-TTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAGGGATCTGATGAAGTAGATAAAGAGAGGCTAAACCACGTATGCTTTAGTAAGGACTGTGAATGGCTTCTGTTCACGGGCAACTTGGGTGGAGTAACAGCAGAACCAGTGTCACTGCCAAATCAATATCAACCCTACGGTGACTTATATTTGGTGAAGTTGGATGGGAGTGGGTTGAGACGACTGACATGTAATGCATATGAGAATGGAACTCCGGCATGGCACCCATCAGGTACGCCTATGACTGCTTTGGACATAGAACGGAACGTTATAGTAGGAGATAAGTTGAGGGGTGAATTTGATGATGTACTATGGATGAATTGTTGAGGTAGAACAAAAGTGTCCAGTCAAGAGAAAGATCAATCTGAACTTCAAACAGGTGCTATTGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234051" ref_strand="+" ref_description="SGN-E234051 [cLEL-8-J22](-)">
      <seq>gatgaattgttgaggtagaacaaaagtgtccagtcaagagaaagatcaatctgaacttcaaacaggtgctattgttgttctctcattgagttcagatatcatattattcgtacgggctgacgacagaagtatctcggcaaaatgatctggtcaaggattcttgtattctattttcgggtctcttacatgttaaaataaacatctctagagagatttgatgtaaattgttatgggataaacgcaattgatcctgcaattttgaaggatcaattgctttggcatgaagtaaaagaaagaaataatgttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86748" stop="87660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87048" g_stop="87353" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="328"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E234051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87048" e_stop="87353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATTGTTGAGGTAGAACAAAAGTGTCCAGTCAAGAGAAAGATCAATCTGAACTTCAAACAGGTGCTATTGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTT</genome_strand>
        <mrna_strand>GATGAATTGTTGAGGTAGAACAAAAGTGTCCAGTCAAGAGAAAGATCAATCTGAACTTCAAACAGGTGCTATTGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234294" ref_strand="+" ref_description="SGN-E234294 [cLEL-8-J22](-)">
      <seq>aagagaaagttcaatctgaacttcaaacaggtgctaatgttgttctctcattgagttcagatatcatattattcgtacgggctgacgacagaagtatctcggcaaaatgatctggtcaaggattcttgtattctattttcgggtctcttacatgttaaaataaacatctctagaaagatttgatgtaaattgttatgggatagacgcaattgatcctgcaattttgaaggatcaattgctttggcatgaagtaaaagaaagaaataatgttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86783" stop="87660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87083" g_stop="87353" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="293"/>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E234294" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87083" e_stop="87353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAGATCAATCTGAACTTCAAACAGGTGCTATTGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTT</genome_strand>
        <mrna_strand>AAGAGAAAGTTCAATCTGAACTTCAAACAGGTGCTAATGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAAAGATTTGATGTAAATTGTTATGGGATAGACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392009" ref_strand="+" ref_description="SGN-E392009 [TUS-24-I20](-)">
      <seq>ttttttttgggttttttacctgttaaaataaccatctttagagagatttgatgtaaattgttatggggtaaacgcaattgatcctgcaattttgaaggatcaattgctttggcctgaagtaaaagaaagaaataatgttgttgggacttgtggtccttatttatttagtatgtacttattaaaaattttgggaagatgataggtaacaattcctgatactctgtaaataaaactttaaaagaaaggaaggggtagcttaagcttttcctttattttcccctgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86916" stop="87778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87215" g_stop="87534" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E392009" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87215" e_stop="87534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTTGTTGAGACTTGTGGTCATTATTTATCTAGTATGTACTTATTAAAAATATTGTGAAGATCATAGGTAACAATTCATGATACTCTGTAAATAAAACTATAAAAGAAAGGAAGGAGTAGCTTAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTTTTTTTGGGTTTTTTACCTGTTAAAATAACCATCTTTAGAGAGATTTGATGTAAATTGTTATGGGGTAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCCTGAAGTAAAAGAAAGAAATAATGTTGTTGGGACTTGTGGTCCTTATTTATTTAGTATGTACTTATTAAAAATTTTGGGAAGATGATAGGTAACAATTCCTGATACTCTGTAAATAAAACTTTAAAAGAAAGGAAGGGGTAGCTTAAGCTTTTCCTTTATTTTCCCCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119517" stop="120670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119817" g_stop="120370" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119817" e_stop="120370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTCGTAAGAGAGGGTGAAGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGTCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCAGAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACTGGGCCTATAATGACAAATGATTAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAATGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120840" stop="119584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120540" g_stop="119821" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120540" e_stop="119821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCTCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACATTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTAATCATTTGTCATTATAGGCCCAGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAATAGCCGCATGTTGTACCTCTGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCTTCACCCTCTCT-TACGACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATC-CCTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120837" stop="119574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120537" g_stop="119874" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120537" e_stop="119874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACATTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTAATCATTTGTCATTATAGGCCCAGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAATAGCCGCATGTTGTACCTCTGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACA-ATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCTTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121401" stop="120104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121101" g_stop="120404" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121101" e_stop="120404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAGGCGTAACAATGGGCCCTATCACGTGTTTGGCCGTTGCCCCTACCATGTTGTGTTGTAGTGGCTCCAGATTTCCCATCACCCCGGCCGTTTTGGTGACCACCATTACTTCGGCCACCATGTCTTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTTCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGAAGTGAAGACTGAATTGGTCGGACTGAGTAGCCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAATCTTTTTGATGTCGATGCCATTGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTTCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120144" stop="122152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120444" g_stop="120630" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120631" i_stop="121374" i_length="744">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121375" g_stop="121838" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="651" r_length="464" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120444" e_stop="120630"/>
          <exon e_start="121375" e_stop="121838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGAGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGAAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACAATGGCATCGACATCAAAAAGATTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGCTACTCAGTCCGACCAATTCAGTCTTCACTTCAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGAAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAAGACATGGTGGCCGAAGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGAAATCTGGAGCCACTACAACACAACATGGTAGGGGCAACGGCCAAACACGTGATAGGGCCCATTGTTACGCCTTCCCTGGGCGGTCTGAAGCGGAGACATCGGATGCTATTATCACTGGTAATCTTTTGATTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGACTCCACATTTTCATATGTATCTTCCTCATTTGCTAATGTTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTACGGTGAGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGACTTTTGCAGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTTGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGCGACTACACTTCCAATTCGGTTAGTATCGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGGTGTTTAGCTTTCTTGGCACATCTCAGGGATGACACTATCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTAGATGCGTTTCCCGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGACTCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGTCTCCCGCCGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTAGGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121768" stop="120838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121468" g_stop="121138" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121468" e_stop="121138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCTGCAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACTCACCGTAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGAACATTAGCAAATGAGGAAGATACATATGAAAATGTGGAGTCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="+" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120868" stop="122128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121168" g_stop="121828" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121168" e_stop="121828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCCGACTCCACATTTTCATATGTATCTTCCTCATTTGCTAATGTTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTACGGTGAGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGACTTTTGCAGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTTGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGCGACTACACTTCCAATTCGGTTAGTATCGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGGTGTTTAGCTTTCTTGGCACATCTCAGGGATGACACTATCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTAGATGCGTTTCCCGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGACTCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGTCTCCCGCCGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTAGGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTG-TGGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122171" stop="120911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121871" g_stop="121211" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121871" e_stop="121211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCCCATCCTTTTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCCTAACAACTCTTGAAGTTGAGCCTTTAACTCCCTTAACTCGGCGGGAGACATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGAGTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCGGGAAACGCATCTAGAAACTCACGGACTATCGAAACAGACTCAATTGAAGGTACTTGGATAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAAACACCCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACTAACCGAATTGGAAGTGTAGTCGCCCTCCCATACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCTGCAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACTCACCGTAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGAACATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122689" stop="121411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122389" g_stop="121710" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122389" e_stop="121710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGACACCACGTGACCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTATTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACAACAAATTCGTAATGCTCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACAGGATCTCAAGTCAATCCTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATAGGATATTTGTTCTTAATAGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGGAAACTCCCATCCTTTTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCCTAACAACTCTTGAAGTTGAGCCTTTAACTCCCTTAACTCGGCGGGAGACATTCTATAAGGGGGTATAGAAATGGGGTGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122759" stop="121448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122459" g_stop="121748" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122459" e_stop="121748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGT-GGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGACACCACGTGACCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTATTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACAACAAATTCGTAATGCTCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACAGGATCTCAAGTCAATCCTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATAGGATATTTGTTCTTAATAGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGGAAACTCCCATCCTTTTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCCTAACAACTCTTGAAGTTGAGCCTTTAACTCCCTTAACTCGGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTT-GCTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122759" stop="121565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122459" g_stop="121865" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122459" e_stop="121865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGT-GGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGACACCACGTGACCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTATTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACAACAAATTCGTAATGCTCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACAGGATCTCAAGTCAATCCTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATAGGATATTTGTTCTTAATAGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGGAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122759" stop="121635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122459" g_stop="121935" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122459" e_stop="121935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGT-GGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGACACCACGTGACCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTATTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACAACAAATTCGTAATGCTCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACAGGATCTCAAGTCAATCCTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0095I22-Ajo1p/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0095I22.1" temp_strand="-" temp_description="C06HBa0095I22.1  AC216648.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0095I22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122689" stop="121731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122389" g_stop="122031" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0095I22.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0095I22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122389" e_stop="122031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGACACCACGTGACCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTATTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACAACAAATTCGTAATGCTCATACCTGGTCCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>103</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="752" PGL_stop="211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="752" e_stop="211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="752" e_stop="211" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="752" stop="211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAACTTCCGAAATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCAGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCGGGAATGGGCATTCTCTGAAGTGTTCCTCCAGGCCTTTTGTGTTCATACTTTACTTGCTGACAATTTGGACATTTGGCAACAAACTCCACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACGCGGGGTACGCATACCCTTCCCTTGATTCTTAAAACACCTTCCTCATCAATTGTTGCTTCTTT</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  R  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  L  C  S  Y  F  T  C  *  Q  F  G  H  L  A  T  N  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  V  A  S   </first_frame>
            <second_frame>  P  H  A  M  F  S  K  T  *  K  *  I  A  Y  L  Y  L  I  *  W  R  V  E  P  H  A  T  E  Q  L  P  K  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  T  Y  Q  Q  S  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  R  E  W  A  F  S  E  V  F  L  Q  A  F  C  V  H  T  L  L  A  D  N  L  D  I  W  Q  Q  T  P  Q  C  H  A  S  F  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  S  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  Q  R  G  V  R  I  P  F  P  *  F  L  K  H  L  P  H  Q  L  L  L  L  </second_frame>
            <third_frame>   R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  P  N  N  F  R  N  V  K  F  G  *  L  L  C  I  V  S  H  L  D  Q  N  E  V  S  R  L  S  *  P  I  N  N  H  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  G  N  G  H  S  L  K  C  S  S  R  P  F  V  F  I  L  Y  L  L  T  I  W  T  F  G  N  K  L  H  N  V  T  L  H  S  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  V  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  N  A  G  Y  A  Y  P  S  L  D  S  *  N  T  F  L  I  N  C  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="589" stop="326"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTYQQSPKWSHTYPLSLEDQPRSPLQFSPTSIREWAFSEVFLQAFCVHTLLADNLDIWQQTPQCHASFYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="585" stop="361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNGVILTHCLWKTNHEVHCNSLPLPFGNGHSLKCSSRPFVFILYLLTIWTFGNKLHNVTLHSTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="50294" PGL_stop="46559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50294" e_stop="49983"/>
            <exon e_start="49870" e_stop="49825"/>
            <exon e_start="49722" e_stop="49695"/>
            <exon e_start="48849" e_stop="48762"/>
            <exon e_start="48655" e_stop="48588"/>
            <exon e_start="48379" e_stop="48310"/>
            <exon e_start="47117" e_stop="47082"/>
            <exon e_start="46936" e_stop="46559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.066" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.693" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50294" e_stop="49983" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49982" i_stop="49871" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49870" e_stop="49825" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.066">
            <gDNA_intron_boundary i_start="49824" i_stop="49723" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49722" e_stop="49695" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="49694" i_stop="48850" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48849" e_stop="48762" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="48761" i_stop="48656" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48655" e_stop="48588" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.693" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48587" i_stop="48380" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48379" e_stop="48310" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="48309" i_stop="47118" i_length="1192"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47117" e_stop="47082" e_length="36"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47081" i_stop="46937" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="46936" e_stop="46559" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50294" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50293" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50259" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278507" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50252" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50251" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50247" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50246" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50236" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50230" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50228" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50224" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50217" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50217" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50213" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50210" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50207" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50206" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50197" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50192" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50185" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50179" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50179" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50176" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50173" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50171" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50171" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50162" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50104" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50100" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50044" stop="49983"/>
              <exon start="49870" stop="49825"/>
              <exon start="49722" stop="49695"/>
              <exon start="48849" stop="48762"/>
              <exon start="48655" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48633" stop="48588"/>
              <exon start="48379" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48372" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48331" stop="48310"/>
              <exon start="47117" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47088" stop="47082"/>
              <exon start="46936" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46932" stop="46596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACAAGAGAAAAGGTAAAGAATCCAAATTATTCAGAAATGGCGTTACTTCACTTCACTTCACTATTTTTAAGGCCATAGAACTCATCGATTATCAGCTCTCTCTTCTGCAACTCAACGCCAATGGCTTCTCCCTCACTTTCAAAATCCAATTTCTCCCTTCACTCCTTCTCTTCTTCTCCATCCTTGTCACAGTTCCCTCATTTCACTTCCATCACCGTTGTTCAACCCAAATTCTTCCCTTCGCAGCTCACCTTCAAACGCTGTCAAAATGCTCCTTCTTTCCCGATTATCAGAGCCCAAAACTCTCCAG : ATTTCGTCCCTGATGCGAAGTTTTACAAAGTTGAAGCAATTCTAAG : ACCTTGGAGAATTCAACAGGTTTCTTCG : GCACTACTGAAAATGGGCATTCGTGGTGTCACTGTTTCGGATGTTCGTGGTTTTGGCGCCCAAGGTGGCTTGACTGAGAGGCAAGCTG : GCTCTGAATTCTCTGAAGACACGTTTGTTGCAAAAGTTAAAATGGAAATTGTTGTCAGCAAAGACCAG : GTTGAAGGAGTCATTGCCAAGATAATTGAAGAGGCAAGAACTGGTGAAATAGGTGATGGAAAGATATTCT : TGACTCCCATCTCCGATGTTATAAGAGTTCGCACTG : GTGAACGGGGAGAAAAGGCAGAGAGGATGATGGGAGGGCATGCTGATATGTCCTCTGCATTATCAACTTCTTGAGCGGCAACGCCTCTATCTTGAAGTTGAAACGTTTAATCATCTTTAGTTGTGTGCAGTCAAGTAGGGAACAAAATAAATAAGTTGGAGACTTACCATGTACCTGTGGTTTCAGTAGCCAATTTCCATAAAAATCGTAGCTTAACAGCCATTTCGTATATGCACACTTCAGCTCAATCGTGGTAACTTTGCCCCCTCCCCCGTTTTGGGTGAAGTTGTGCTGTAATATGTTGGTCGATCACTGTGGATATTGAATGATAAGCTATTCAAGCAATTTCCTAAATGAGCCGTTCATATATATCAAATC</gDNA_template>
            <first_frame> *  Q  E  K  R  *  R  I  Q  I  I  Q  K  W  R  Y  F  T  S  L  H  Y  F  *  G  H  R  T  H  R  L  S  A  L  S  S  A  T  Q  R  Q  W  L  L  P  H  F  Q  N  P  I  S  P  F  T  P  S  L  L  L  H  P  C  H  S  S  L  I  S  L  P  S  P  L  F  N  P  N  S  S  L  R  S  S  P  S  N  A  V  K  M  L  L  L  S  R  L  S  E  P  K  T  L  Q  :  I  S  S  L  M  R  S  F  T  K  L  K  Q  F  *   : D  L  G  E  F  N  R  F  L  R :   H  Y  *  K  W  A  F  V  V  S  L  F  R  M  F  V  V  L  A  P  K  V  A  *  L  R  G  K  L  :  A  L  N  S  L  K  T  R  L  L  Q  K  L  K  W  K  L  L  S  A  K  T  R :   L  K  E  S  L  P  R  *  L  K  R  Q  E  L  V  K  *  V  M  E  R  Y  S  :  *  L  P  S  P  M  L  *  E  F  A  L  :  V  N  G  E  K  R  Q  R  G  *  W  E  G  M  L  I  C  P  L  H  Y  Q  L  L  E  R  Q  R  L  Y  L  E  V  E  T  F  N  H  L  *  L  C  A  V  K  *  G  T  K  *  I  S  W  R  L  T  M  Y  L  W  F  Q  *  P  I  S  I  K  I  V  A  *  Q  P  F  R  I  C  T  L  Q  L  N  R  G  N  F  A  P  S  P  V  L  G  E  V  V  L  *  Y  V  G  R  S  L  W  I  L  N  D  K  L  F  K  Q  F  P  K  *  A  V  H  I  Y  Q  I </first_frame>
            <second_frame>  N  K  R  K  G  K  E  S  K  L  F  R  N  G  V  T  S  L  H  F  T  I  F  K  A  I  E  L  I  D  Y  Q  L  S  L  L  Q  L  N  A  N  G  F  S  L  T  F  K  I  Q  F  L  P  S  L  L  L  F  F  S  I  L  V  T  V  P  S  F  H  F  H  H  R  C  S  T  Q  I  L  P  F  A  A  H  L  Q  T  L  S  K  C  S  F  F  P  D  Y  Q  S  P  K  L  S  R :   F  R  P  *  C  E  V  L  Q  S  *  S  N  S  K  :  T  L  E  N  S  T  G  F  F   : G  T  T  E  N  G  H  S  W  C  H  C  F  G  C  S  W  F  W  R  P  R  W  L  D  *  E  A  S  W :   L  *  I  L  *  R  H  V  C  C  K  S  *  N  G  N  C  C  Q  Q  R  P   : G  *  R  S  H  C  Q  D  N  *  R  G  K  N  W  *  N  R  *  W  K  D  I  L :   D  S  H  L  R  C  Y  K  S  S  H  W :   *  T  G  R  K  G  R  E  D  D  G  R  A  C  *  Y  V  L  C  I  I  N  F  L  S  G  N  A  S  I  L  K  L  K  R  L  I  I  F  S  C  V  Q  S  S  R  E  Q  N  K  *  V  G  D  L  P  C  T  C  G  F  S  S  Q  F  P  *  K  S  *  L  N  S  H  F  V  Y  A  H  F  S  S  I  V  V  T  L  P  P  P  P  F  W  V  K  L  C  C  N  M  L  V  D  H  C  G  Y  *  M  I  S  Y  S  S  N  F  L  N  E  P  F  I  Y  I  K   </second_frame>
            <third_frame>   T  R  E  K  V  K  N  P  N  Y  S  E  M  A  L  L  H  F  T  S  L  F  L  R  P  *  N  S  S  I  I  S  S  L  F  C  N  S  T  P  M  A  S  P  S  L  S  K  S  N  F  S  L  H  S  F  S  S  S  P  S  L  S  Q  F  P  H  F  T  S  I  T  V  V  Q  P  K  F  F  P  S  Q  L  T  F  K  R  C  Q  N  A  P  S  F  P  I  I  R  A  Q  N  S  P   : D  F  V  P  D  A  K  F  Y  K  V  E  A  I  L  R :   P  W  R  I  Q  Q  V  S  S  :  A  L  L  K  M  G  I  R  G  V  T  V  S  D  V  R  G  F  G  A  Q  G  G  L  T  E  R  Q  A   : G  S  E  F  S  E  D  T  F  V  A  K  V  K  M  E  I  V  V  S  K  D  Q  :  V  E  G  V  I  A  K  I  I  E  E  A  R  T  G  E  I  G  D  G  K  I  F   : L  T  P  I  S  D  V  I  R  V  R  T   : G  E  R  G  E  K  A  E  R  M  M  G  G  H  A  D  M  S  S  A  L  S  T  S  *  A  A  T  P  L  S  *  S  *  N  V  *  S  S  L  V  V  C  S  Q  V  G  N  K  I  N  K  L  E  T  Y  H  V  P  V  V  S  V  A  N  F  H  K  N  R  S  L  T  A  I  S  Y  M  H  T  S  A  Q  S  W  *  L  C  P  L  P  R  F  G  *  S  C  A  V  I  C  W  S  I  T  V  D  I  E  *  *  A  I  Q  A  I  S  *  M  S  R  S  Y  I  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50214" stop="49983"/>
                    <exon start="49870" stop="49825"/>
                    <exon start="49722" stop="49695"/>
                    <exon start="48849" stop="48762"/>
                    <exon start="48655" stop="48588"/>
                    <exon start="48379" stop="48310"/>
                    <exon start="47117" stop="47082"/>
                    <exon start="46936" stop="46863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIISSLFCNSTPMASPSLSKSNFSLHSFSSSPSLSQFPHFTSITVVQPKFFPSQLTFKRCQNAPSFPIIRAQNSPDFVPDAKFYKVEAILRPWRIQQVSSALLKMGIRGVTVSDVRGFGAQGGLTERQAGSEFSEDTFVAKVKMEIVVSKDQVEGVIAKIIEEARTGEIGDGKIFLTPISDVIRVRTGERGEKAERMMGGHADMSSALSTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="79997" PGL_stop="83360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79997" e_stop="80581"/>
            <exon e_start="80669" e_stop="80702"/>
            <exon e_start="80788" e_stop="80937"/>
            <exon e_start="81472" e_stop="81561"/>
            <exon e_start="82269" e_stop="82334"/>
            <exon e_start="82455" e_stop="82546"/>
            <exon e_start="82637" e_stop="82684"/>
            <exon e_start="82764" e_stop="82871"/>
            <exon e_start="83164" e_stop="83360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.794" e_score="0.997"/>
          <exon-intron don_prob="0.467" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.710" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="79997" e_stop="80581" e_length="585"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.794">
            <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80669" e_stop="80702" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.467" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80788" e_stop="80937" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.918">
            <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81472" e_stop="81561" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82269" e_stop="82334" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.731" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82455" e_stop="82546" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.710" acc_prob="0.878">
            <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82637" e_stop="82684" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.758">
            <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82764" e_stop="82871" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="83164" e_stop="83360" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79997" stop="80448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80000" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80041" stop="80581"/>
              <exon start="80669" stop="80674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80053" stop="80245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80064" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80069" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80149" stop="80447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80152" stop="80581"/>
              <exon start="80669" stop="80679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80174" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80581"/>
              <exon start="80669" stop="80699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80248" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80276" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81515" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82455" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81528" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82455" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82509" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82669" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATAGAATCTATGAAATAGTGTATAAGCTATTGTACACAACTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA : ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG : CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG : ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG : CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT : CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG : GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG : GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG : TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</gDNA_template>
            <first_frame> I  H  R  I  Y  E  I  V  Y  K  L  L  Y  T  T  L  S  Y  A  T  P  D  S  *  K  S  R  I  T  R  I  Y  R  T  Q  F  Y  Y  T  F  L  R  E  A  I  F  K  S  L  S  F  R  N  G  N  Y  Q  P  I  L  T  Y  R  L  W  Y  A  C  K  R  V  I  L  L  I  F  P  W  P  V  Y  S  T  S  S  V  L  L  L  F  S  I  N  *  N  K  E  R  N  R  D  V  C  L  G  F  R  L  L  A  S  M  A  S  L  C  L  C  S  N  L  H  H  T  N  N  N  R  I  K  I  H  H  Q  Q  A  E  K  R  K  R  T  Y  Y  Y  K  V  D  *  S  V  D  P  L  L  E  K  S  P  S  Y  L  A  S  Q  L  *  S  F  R  F  S  C  Y  G  F  Y  D  L  S  D  C  C  *  L  R  I  L  R  L  P  I  L  H  T  :  M  D  I  C  F  S  W  D  L  F  C   : A  G  N  F  Y  I  G  P  G  M  L  V  V  Y  N  E  S  A  R  R  N  G  *  I  S  *  N  N  C  *  T  E  *  L  *  A  T  A  W  I  F  G  K  F  D  A  N  Y  L  S   : D  L  C  R  C  C  Y  A  D  R  Y  C  L  L  V  S  I  A  P  I  Y  D  G  *  K  F  *  A  H  P   : A  D  W  I  N  A  L  C  K  C  C  I  S  S  S  *  F  S  P  E  Q  S   : S  I  Y  L  V  W  Y  H  L  F  Y  T  M  E  L  F  L  Y  C  F  P  V  E  S  T  C  V  L  L  I  L  :  V  A  V  S  F  L  G  T  *  H  S  M  G  T  I  V  :  V  F  W  H  G  S  G  S  H  P  L  L  W  T  I  R  V  A  Y  Q  S  K  R  P  N  I  L  K  I  V  S  T  G  I  S  *  :  W  G  *  D  C  N  G  E  E  A  Y  L  R  *  G  R  L  *  *  R  N  K  N  S  R  *  *  L  L  Y  V  *  I  N  E  I  V  I  I  F  H  S  Y  T  K  Y  Q  I  K  L  Q  H  *  Y  G  A  S  F  G  C  H  E  I  A  Q   </first_frame>
            <second_frame>  Y  I  E  S  M  K  *  C  I  S  Y  C  T  Q  L  Y  L  M  L  H  L  I  R  E  R  V  G  S  Q  E  S  I  V  H  S  F  I  I  R  F  F  E  R  L  F  S  K  A  *  V  S  E  M  A  T  T  N  Q  S  *  L  I  G  C  G  M  P  A  K  E  S  S  C  *  F  F  H  G  L  Y  T  L  L  A  L  F  Y  F  Y  F  P  S  T  K  T  K  R  E  T  E  M  S  A  L  G  L  D  Y  W  L  Q  W  Q  V  F  V  C  A  L  I  F  I  I  P  T  T  I  A  L  R  F  I  I  N  K  R  R  K  E  N  E  P  I  I  I  K  S  T  D  L  W  I  P  C  W  R  N  L  H  P  I  W  L  L  S  F  R  A  S  A  L  V  A  M  A  F  M  I  Y  Q  T  V  V  N  L  G  F  F  V  F  L  F  Y  T  Q :   W  T  F  A  L  V  G  I  Y  F  A  :  L  G  T  F  I  S  A  R  G  C  W  L  Y  T  T  N  Q  R  G  E  T  D  K  F  L  R  T  T  A  E  Q  S  N  S  E  Q  Q  L  G  F  L  E  N  L  M  L  I  I  Y  Q  :  I  C  A  G  A  V  M  L  T  D  I  V  F  W  C  L  L  L  P  F  M  T  G  E  N  F  K  L  T  L  :  L  I  G  L  M  H  S  V  N  A  V  F  L  L  L  D  S  V  L  S  N  L  :  Q  F  T  W  F  G  I  T  Y  F  I  L  W  S  C  S  Y  I  V  F  Q  W  S  L  H  V  C  C  L  S  W :   W  P  Y  P  F  L  E  L  N  T  P  W  A  P  L  W :   Y  F  G  M  A  L  V  H  I  P  C  Y  G  L  Y  E  L  L  I  K  A  K  D  Q  I  F  S  R  L  F  P  Q  A  F  L  S :   G  V  E  I  A  M  E  K  K  H  T  *  G  E  E  D  Y  N  E  E  T  R  I  Q  G  S  S  C  C  M  Y  K  *  M  K  L  *  *  F  S  T  V  T  P  N  I  K  *  N  F  N  T  N  M  V  P  L  L  A  V  M  R  L  L  K  </second_frame>
            <third_frame>   T  *  N  L  *  N  S  V  *  A  I  V  H  N  F  I  L  C  Y  T  *  F  V  K  E  S  D  H  K  N  L  S  Y  T  V  L  L  Y  V  S  S  R  G  Y  F  Q  K  L  E  F  Q  K  W  Q  L  P  T  N  L  N  L  S  V  V  V  C  L  Q  K  S  H  P  V  D  F  S  M  A  C  I  L  Y  *  L  C  S  T  S  I  F  H  Q  L  K  Q  R  E  K  Q  R  C  L  P  W  V  *  T  T  G  F  N  G  K  S  L  F  V  L  *  S  S  S  Y  Q  Q  Q  S  H  *  D  S  S  S  T  S  G  E  K  K  T  N  L  L  L  *  S  R  L  I  C  G  S  P  V  G  E  I  S  I  L  F  G  F  S  A  L  E  L  P  L  *  L  L  W  L  L  *  F  I  R  L  L  L  T  *  D  S  S  S  S  Y  S  T  H   : N  G  H  L  L  *  L  G  S  I  L  R :   W  E  L  L  Y  R  P  G  D  A  G  C  I  Q  R  I  S  A  E  K  R  I  N  F  L  E  Q  L  L  N  R  V  T  L  S  N  S  L  D  F  W  K  I  *  C  *  L  F  I  R :   F  V  Q  V  L  L  C  *  Q  I  L  S  F  G  V  Y  C  S  H  L  *  R  V  K  I  L  S  S  P  C :   *  L  D  *  C  T  L  *  M  L  Y  F  F  F  L  I  Q  S  *  A  I  F :   N  L  L  G  L  V  S  L  I  L  Y  Y  G  A  V  L  I  L  F  S  S  G  V  Y  M  C  A  A  Y  L   : G  G  R  I  L  S  W  N  L  T  L  H  G  H  H  C   : G  I  L  A  W  L  W  F  T  S  P  V  M  D  Y  T  S  C  L  S  K  Q  K  T  K  Y  S  Q  D  C  F  H  R  H  F  L   : V  G  L  R  L  Q  W  R  R  S  I  L  E  V  R  K  T  I  M  K  K  Q  E  F  K  V  V  V  V  V  C  I  N  K  *  N  C  N  N  F  P  Q  L  H  Q  I  S  N  K  T  S  T  L  I  W  C  L  F  W  L  S  *  D  C  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80220" stop="80581"/>
                    <exon start="80669" stop="80702"/>
                    <exon start="80788" stop="80937"/>
                    <exon start="81472" stop="81561"/>
                    <exon start="82269" stop="82334"/>
                    <exon start="82455" stop="82546"/>
                    <exon start="82637" stop="82684"/>
                    <exon start="82764" stop="82871"/>
                    <exon start="83164" stop="83200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHGLYTLLALFYFYFPSTKTKRETEMSALGLDYWLQWQVFVCALIFIIPTTIALRFIINKRRKENEPIIIKSTDLWIPCWRNLHPIWLLSFRASALVAMAFMIYQTVVNLGFFVFLFYTQWTFALVGIYFALGTFISARGCWLYTTNQRGETDKFLRTTAEQSNSEQQLGFLENLMLIIYQICAGAVMLTDIVFWCLLLPFMTGENFKLTLLIGLMHSVNAVFLLLDSVLSNLQFTWFGITYFILWSCSYIVFQWSLHVCCLSWWPYPFLELNTPWAPLWYFGMALVHIPCYGLYELLIKAKDQIFSRLFPQAFLSGVEIAMEKKHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79997" e_stop="80581"/>
            <exon e_start="80669" e_stop="80702"/>
            <exon e_start="80788" e_stop="80937"/>
            <exon e_start="81472" e_stop="81561"/>
            <exon e_start="82269" e_stop="82334"/>
            <exon e_start="82455" e_stop="82546"/>
            <exon e_start="82637" e_stop="82684"/>
            <exon e_start="82764" e_stop="83061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.794" e_score="0.997"/>
          <exon-intron don_prob="0.467" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.710" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.758" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="79997" e_stop="80581" e_length="585"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.794">
            <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80669" e_stop="80702" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.467" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80788" e_stop="80937" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.918">
            <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81472" e_stop="81561" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82269" e_stop="82334" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.731" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82455" e_stop="82546" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.710" acc_prob="0.878">
            <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82637" e_stop="82684" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.758">
            <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="82764" e_stop="83061" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79997" stop="80448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80000" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80041" stop="80581"/>
              <exon start="80669" stop="80674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80053" stop="80245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80064" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80069" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80149" stop="80447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80152" stop="80581"/>
              <exon start="80669" stop="80679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80174" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80581"/>
              <exon start="80669" stop="80699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80248" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80276" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80921" stop="80937"/>
              <exon start="81472" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82455" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="83061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATAGAATCTATGAAATAGTGTATAAGCTATTGTACACAACTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA : ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG : CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG : ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG : CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT : CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG : GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG : GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAA</gDNA_template>
            <first_frame> I  H  R  I  Y  E  I  V  Y  K  L  L  Y  T  T  L  S  Y  A  T  P  D  S  *  K  S  R  I  T  R  I  Y  R  T  Q  F  Y  Y  T  F  L  R  E  A  I  F  K  S  L  S  F  R  N  G  N  Y  Q  P  I  L  T  Y  R  L  W  Y  A  C  K  R  V  I  L  L  I  F  P  W  P  V  Y  S  T  S  S  V  L  L  L  F  S  I  N  *  N  K  E  R  N  R  D  V  C  L  G  F  R  L  L  A  S  M  A  S  L  C  L  C  S  N  L  H  H  T  N  N  N  R  I  K  I  H  H  Q  Q  A  E  K  R  K  R  T  Y  Y  Y  K  V  D  *  S  V  D  P  L  L  E  K  S  P  S  Y  L  A  S  Q  L  *  S  F  R  F  S  C  Y  G  F  Y  D  L  S  D  C  C  *  L  R  I  L  R  L  P  I  L  H  T  :  M  D  I  C  F  S  W  D  L  F  C   : A  G  N  F  Y  I  G  P  G  M  L  V  V  Y  N  E  S  A  R  R  N  G  *  I  S  *  N  N  C  *  T  E  *  L  *  A  T  A  W  I  F  G  K  F  D  A  N  Y  L  S   : D  L  C  R  C  C  Y  A  D  R  Y  C  L  L  V  S  I  A  P  I  Y  D  G  *  K  F  *  A  H  P   : A  D  W  I  N  A  L  C  K  C  C  I  S  S  S  *  F  S  P  E  Q  S   : S  I  Y  L  V  W  Y  H  L  F  Y  T  M  E  L  F  L  Y  C  F  P  V  E  S  T  C  V  L  L  I  L  :  V  A  V  S  F  L  G  T  *  H  S  M  G  T  I  V  :  V  F  W  H  G  S  G  S  H  P  L  L  W  T  I  R  V  A  Y  Q  S  K  R  P  N  I  L  K  I  V  S  T  G  I  S  *  V  V  L  L  S  F  L  L  F  I  E  S  V  M  F  N  F  *  N  F  K  N  V  V  L  G  Y  I  G  V  L  *  D  N  T  V  T  H  S  L  D  Q  W  C  S  L  L  C  I  E  T  *  L  F  Y  L  L  F  D  K  G  C  S  </first_frame>
            <second_frame>  Y  I  E  S  M  K  *  C  I  S  Y  C  T  Q  L  Y  L  M  L  H  L  I  R  E  R  V  G  S  Q  E  S  I  V  H  S  F  I  I  R  F  F  E  R  L  F  S  K  A  *  V  S  E  M  A  T  T  N  Q  S  *  L  I  G  C  G  M  P  A  K  E  S  S  C  *  F  F  H  G  L  Y  T  L  L  A  L  F  Y  F  Y  F  P  S  T  K  T  K  R  E  T  E  M  S  A  L  G  L  D  Y  W  L  Q  W  Q  V  F  V  C  A  L  I  F  I  I  P  T  T  I  A  L  R  F  I  I  N  K  R  R  K  E  N  E  P  I  I  I  K  S  T  D  L  W  I  P  C  W  R  N  L  H  P  I  W  L  L  S  F  R  A  S  A  L  V  A  M  A  F  M  I  Y  Q  T  V  V  N  L  G  F  F  V  F  L  F  Y  T  Q :   W  T  F  A  L  V  G  I  Y  F  A  :  L  G  T  F  I  S  A  R  G  C  W  L  Y  T  T  N  Q  R  G  E  T  D  K  F  L  R  T  T  A  E  Q  S  N  S  E  Q  Q  L  G  F  L  E  N  L  M  L  I  I  Y  Q  :  I  C  A  G  A  V  M  L  T  D  I  V  F  W  C  L  L  L  P  F  M  T  G  E  N  F  K  L  T  L  :  L  I  G  L  M  H  S  V  N  A  V  F  L  L  L  D  S  V  L  S  N  L  :  Q  F  T  W  F  G  I  T  Y  F  I  L  W  S  C  S  Y  I  V  F  Q  W  S  L  H  V  C  C  L  S  W :   W  P  Y  P  F  L  E  L  N  T  P  W  A  P  L  W :   Y  F  G  M  A  L  V  H  I  P  C  Y  G  L  Y  E  L  L  I  K  A  K  D  Q  I  F  S  R  L  F  P  Q  A  F  L  R  S  Y  Y  *  A  S  C  C  L  *  K  V  S  C  S  I  S  K  T  S  R  M  *  F  L  V  I  *  E  Y  Y  R  I  T  R  S  H  I  V  *  T  S  G  V  H  Y  Y  V  S  K  H  N  Y  F  T  Y  F  S  I  K  D  V  Q </second_frame>
            <third_frame>   T  *  N  L  *  N  S  V  *  A  I  V  H  N  F  I  L  C  Y  T  *  F  V  K  E  S  D  H  K  N  L  S  Y  T  V  L  L  Y  V  S  S  R  G  Y  F  Q  K  L  E  F  Q  K  W  Q  L  P  T  N  L  N  L  S  V  V  V  C  L  Q  K  S  H  P  V  D  F  S  M  A  C  I  L  Y  *  L  C  S  T  S  I  F  H  Q  L  K  Q  R  E  K  Q  R  C  L  P  W  V  *  T  T  G  F  N  G  K  S  L  F  V  L  *  S  S  S  Y  Q  Q  Q  S  H  *  D  S  S  S  T  S  G  E  K  K  T  N  L  L  L  *  S  R  L  I  C  G  S  P  V  G  E  I  S  I  L  F  G  F  S  A  L  E  L  P  L  *  L  L  W  L  L  *  F  I  R  L  L  L  T  *  D  S  S  S  S  Y  S  T  H   : N  G  H  L  L  *  L  G  S  I  L  R :   W  E  L  L  Y  R  P  G  D  A  G  C  I  Q  R  I  S  A  E  K  R  I  N  F  L  E  Q  L  L  N  R  V  T  L  S  N  S  L  D  F  W  K  I  *  C  *  L  F  I  R :   F  V  Q  V  L  L  C  *  Q  I  L  S  F  G  V  Y  C  S  H  L  *  R  V  K  I  L  S  S  P  C :   *  L  D  *  C  T  L  *  M  L  Y  F  F  F  L  I  Q  S  *  A  I  F :   N  L  L  G  L  V  S  L  I  L  Y  Y  G  A  V  L  I  L  F  S  S  G  V  Y  M  C  A  A  Y  L   : G  G  R  I  L  S  W  N  L  T  L  H  G  H  H  C   : G  I  L  A  W  L  W  F  T  S  P  V  M  D  Y  T  S  C  L  S  K  Q  K  T  K  Y  S  Q  D  C  F  H  R  H  F  L  G  R  I  T  E  L  P  V  V  Y  R  K  C  H  V  Q  F  L  K  L  Q  E  C  S  S  W  L  Y  R  S  T  I  G  *  H  G  H  T  *  F  R  P  V  V  F  T  I  M  Y  R  N  I  T  I  L  L  T  F  R  *  R  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80220" stop="80581"/>
                    <exon start="80669" stop="80702"/>
                    <exon start="80788" stop="80937"/>
                    <exon start="81472" stop="81561"/>
                    <exon start="82269" stop="82334"/>
                    <exon start="82455" stop="82546"/>
                    <exon start="82637" stop="82684"/>
                    <exon start="82764" stop="82884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHGLYTLLALFYFYFPSTKTKRETEMSALGLDYWLQWQVFVCALIFIIPTTIALRFIINKRRKENEPIIIKSTDLWIPCWRNLHPIWLLSFRASALVAMAFMIYQTVVNLGFFVFLFYTQWTFALVGIYFALGTFISARGCWLYTTNQRGETDKFLRTTAEQSNSEQQLGFLENLMLIIYQICAGAVMLTDIVFWCLLLPFMTGENFKLTLLIGLMHSVNAVFLLLDSVLSNLQFTWFGITYFILWSCSYIVFQWSLHVCCLSWWPYPFLELNTPWAPLWYFGMALVHIPCYGLYELLIKAKDQIFSRLFPQAFLRSYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79997" e_stop="80581"/>
            <exon e_start="80669" e_stop="80702"/>
            <exon e_start="80788" e_stop="81117"/>
            <exon e_start="81472" e_stop="81561"/>
            <exon e_start="82269" e_stop="82334"/>
            <exon e_start="82455" e_stop="82546"/>
            <exon e_start="82637" e_stop="82684"/>
            <exon e_start="82764" e_stop="82871"/>
            <exon e_start="83164" e_stop="83360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.794" e_score="0.998"/>
          <exon-intron don_prob="0.467" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.768" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.710" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79997" e_stop="80581" e_length="585"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.794">
            <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80669" e_stop="80702" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.467" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80788" e_stop="81117" e_length="330"/>
          </exon>
          <intron i_serial="3" don_prob="0.768" acc_prob="0.918">
            <gDNA_intron_boundary i_start="81118" i_stop="81471" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81472" e_stop="81561" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82269" e_stop="82334" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.731" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82335" i_stop="82454" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82455" e_stop="82546" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.710" acc_prob="0.878">
            <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82637" e_stop="82684" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.758">
            <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82764" e_stop="82871" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="83164" e_stop="83360" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79997" stop="80448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80041" stop="80581"/>
              <exon start="80669" stop="80674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80053" stop="80245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80069" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80149" stop="80447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80152" stop="80581"/>
              <exon start="80669" stop="80679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80174" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80581"/>
              <exon start="80669" stop="80699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80904" stop="81117"/>
              <exon start="81472" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82455" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539977" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81515" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82455" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81528" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82455" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82509" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82669" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATAGAATCTATGAAATAGTGTATAAGCTATTGTACACAACTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA : ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG : CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAGGTTAGCATTCGAAAATGTCAAATTTGGATGTTTTTAACAAATTTTCCTACCTCTGAGAAGTTGGGGGAGCTTAACTTGTTCAACAAGTTTGAAAGGAAGGATTTGTCTTGATGGTGAATGGACTAAATGAATTTGTCTGCCTAATCGCATTAACAACGATTAATTCAGCAATCACAGCAA : ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG : CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT : CAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG : GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG : GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG : TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</gDNA_template>
            <first_frame> I  H  R  I  Y  E  I  V  Y  K  L  L  Y  T  T  L  S  Y  A  T  P  D  S  *  K  S  R  I  T  R  I  Y  R  T  Q  F  Y  Y  T  F  L  R  E  A  I  F  K  S  L  S  F  R  N  G  N  Y  Q  P  I  L  T  Y  R  L  W  Y  A  C  K  R  V  I  L  L  I  F  P  W  P  V  Y  S  T  S  S  V  L  L  L  F  S  I  N  *  N  K  E  R  N  R  D  V  C  L  G  F  R  L  L  A  S  M  A  S  L  C  L  C  S  N  L  H  H  T  N  N  N  R  I  K  I  H  H  Q  Q  A  E  K  R  K  R  T  Y  Y  Y  K  V  D  *  S  V  D  P  L  L  E  K  S  P  S  Y  L  A  S  Q  L  *  S  F  R  F  S  C  Y  G  F  Y  D  L  S  D  C  C  *  L  R  I  L  R  L  P  I  L  H  T  :  M  D  I  C  F  S  W  D  L  F  C   : A  G  N  F  Y  I  G  P  G  M  L  V  V  Y  N  E  S  A  R  R  N  G  *  I  S  *  N  N  C  *  T  E  *  L  *  A  T  A  W  I  F  G  K  F  D  A  N  Y  L  S  G  *  H  S  K  M  S  N  L  D  V  F  N  K  F  S  Y  L  *  E  V  G  G  A  *  L  V  Q  Q  V  *  K  E  G  F  V  L  M  V  N  G  L  N  E  F  V  C  L  I  A  L  T  T  I  N  S  A  I  T  A   : N  L  C  R  C  C  Y  A  D  R  Y  C  L  L  V  S  I  A  P  I  Y  D  G  *  K  F  *  A  H  P   : A  D  W  I  N  A  L  C  K  C  C  I  S  S  S  *  F  S  P  E  Q  S   : S  I  Y  L  V  W  Y  H  L  F  Y  T  M  E  L  F  L  Y  C  F  P  V  E  S  T  C  V  L  L  I  L  :  V  A  V  S  F  L  G  T  *  H  S  M  G  T  I  V  :  V  F  W  H  G  S  G  S  H  P  L  L  W  T  I  R  V  A  Y  Q  S  K  R  P  N  I  L  K  I  V  S  T  G  I  S  *  :  W  G  *  D  C  N  G  E  E  A  Y  L  R  *  G  R  L  *  *  R  N  K  N  S  R  *  *  L  L  Y  V  *  I  N  E  I  V  I  I  F  H  S  Y  T  K  Y  Q  I  K  L  Q  H  *  Y  G  A  S  F  G  C  H  E  I  A  Q   </first_frame>
            <second_frame>  Y  I  E  S  M  K  *  C  I  S  Y  C  T  Q  L  Y  L  M  L  H  L  I  R  E  R  V  G  S  Q  E  S  I  V  H  S  F  I  I  R  F  F  E  R  L  F  S  K  A  *  V  S  E  M  A  T  T  N  Q  S  *  L  I  G  C  G  M  P  A  K  E  S  S  C  *  F  F  H  G  L  Y  T  L  L  A  L  F  Y  F  Y  F  P  S  T  K  T  K  R  E  T  E  M  S  A  L  G  L  D  Y  W  L  Q  W  Q  V  F  V  C  A  L  I  F  I  I  P  T  T  I  A  L  R  F  I  I  N  K  R  R  K  E  N  E  P  I  I  I  K  S  T  D  L  W  I  P  C  W  R  N  L  H  P  I  W  L  L  S  F  R  A  S  A  L  V  A  M  A  F  M  I  Y  Q  T  V  V  N  L  G  F  F  V  F  L  F  Y  T  Q :   W  T  F  A  L  V  G  I  Y  F  A  :  L  G  T  F  I  S  A  R  G  C  W  L  Y  T  T  N  Q  R  G  E  T  D  K  F  L  R  T  T  A  E  Q  S  N  S  E  Q  Q  L  G  F  L  E  N  L  M  L  I  I  Y  Q  V  S  I  R  K  C  Q  I  W  M  F  L  T  N  F  P  T  S  E  K  L  G  E  L  N  L  F  N  K  F  E  R  K  D  L  S  *  W  *  M  D  *  M  N  L  S  A  *  S  H  *  Q  R  L  I  Q  Q  S  Q  Q  :  I  C  A  G  A  V  M  L  T  D  I  V  F  W  C  L  L  L  P  F  M  T  G  E  N  F  K  L  T  L  :  L  I  G  L  M  H  S  V  N  A  V  F  L  L  L  D  S  V  L  S  N  L  :  Q  F  T  W  F  G  I  T  Y  F  I  L  W  S  C  S  Y  I  V  F  Q  W  S  L  H  V  C  C  L  S  W :   W  P  Y  P  F  L  E  L  N  T  P  W  A  P  L  W :   Y  F  G  M  A  L  V  H  I  P  C  Y  G  L  Y  E  L  L  I  K  A  K  D  Q  I  F  S  R  L  F  P  Q  A  F  L  S :   G  V  E  I  A  M  E  K  K  H  T  *  G  E  E  D  Y  N  E  E  T  R  I  Q  G  S  S  C  C  M  Y  K  *  M  K  L  *  *  F  S  T  V  T  P  N  I  K  *  N  F  N  T  N  M  V  P  L  L  A  V  M  R  L  L  K  </second_frame>
            <third_frame>   T  *  N  L  *  N  S  V  *  A  I  V  H  N  F  I  L  C  Y  T  *  F  V  K  E  S  D  H  K  N  L  S  Y  T  V  L  L  Y  V  S  S  R  G  Y  F  Q  K  L  E  F  Q  K  W  Q  L  P  T  N  L  N  L  S  V  V  V  C  L  Q  K  S  H  P  V  D  F  S  M  A  C  I  L  Y  *  L  C  S  T  S  I  F  H  Q  L  K  Q  R  E  K  Q  R  C  L  P  W  V  *  T  T  G  F  N  G  K  S  L  F  V  L  *  S  S  S  Y  Q  Q  Q  S  H  *  D  S  S  S  T  S  G  E  K  K  T  N  L  L  L  *  S  R  L  I  C  G  S  P  V  G  E  I  S  I  L  F  G  F  S  A  L  E  L  P  L  *  L  L  W  L  L  *  F  I  R  L  L  L  T  *  D  S  S  S  S  Y  S  T  H   : N  G  H  L  L  *  L  G  S  I  L  R :   W  E  L  L  Y  R  P  G  D  A  G  C  I  Q  R  I  S  A  E  K  R  I  N  F  L  E  Q  L  L  N  R  V  T  L  S  N  S  L  D  F  W  K  I  *  C  *  L  F  I  R  L  A  F  E  N  V  K  F  G  C  F  *  Q  I  F  L  P  L  R  S  W  G  S  L  T  C  S  T  S  L  K  G  R  I  C  L  D  G  E  W  T  K  *  I  C  L  P  N  R  I  N  N  D  *  F  S  N  H  S  K :   F  V  Q  V  L  L  C  *  Q  I  L  S  F  G  V  Y  C  S  H  L  *  R  V  K  I  L  S  S  P  C :   *  L  D  *  C  T  L  *  M  L  Y  F  F  F  L  I  Q  S  *  A  I  F :   N  L  L  G  L  V  S  L  I  L  Y  Y  G  A  V  L  I  L  F  S  S  G  V  Y  M  C  A  A  Y  L   : G  G  R  I  L  S  W  N  L  T  L  H  G  H  H  C   : G  I  L  A  W  L  W  F  T  S  P  V  M  D  Y  T  S  C  L  S  K  Q  K  T  K  Y  S  Q  D  C  F  H  R  H  F  L   : V  G  L  R  L  Q  W  R  R  S  I  L  E  V  R  K  T  I  M  K  K  Q  E  F  K  V  V  V  V  V  C  I  N  K  *  N  C  N  N  F  P  Q  L  H  Q  I  S  N  K  T  S  T  L  I  W  C  L  F  W  L  S  *  D  C  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80220" stop="80581"/>
                    <exon start="80669" stop="80702"/>
                    <exon start="80788" stop="81048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHGLYTLLALFYFYFPSTKTKRETEMSALGLDYWLQWQVFVCALIFIIPTTIALRFIINKRRKENEPIIIKSTDLWIPCWRNLHPIWLLSFRASALVAMAFMIYQTVVNLGFFVFLFYTQWTFALVGIYFALGTFISARGCWLYTTNQRGETDKFLRTTAEQSNSEQQLGFLENLMLIIYQVSIRKCQIWMFLTNFPTSEKLGELNLFNKFERKDLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81091" stop="81117"/>
                    <exon start="81472" stop="81561"/>
                    <exon start="82269" stop="82334"/>
                    <exon start="82455" stop="82546"/>
                    <exon start="82637" stop="82684"/>
                    <exon start="82764" stop="82871"/>
                    <exon start="83164" stop="83200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRLIQQSQQICAGAVMLTDIVFWCLLLPFMTGENFKLTLLIGLMHSVNAVFLLLDSVLSNLQFTWFGITYFILWSCSYIVFQWSLHVCCLSWWPYPFLELNTPWAPLWYFGMALVHIPCYGLYELLIKAKDQIFSRLFPQAFLSGVEIAMEKKHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="79997" e_stop="80581"/>
            <exon e_start="80669" e_stop="80702"/>
            <exon e_start="80788" e_stop="80937"/>
            <exon e_start="81472" e_stop="81561"/>
            <exon e_start="82269" e_stop="82334"/>
            <exon e_start="82637" e_stop="82684"/>
            <exon e_start="82764" e_stop="83360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.794" e_score="0.997"/>
          <exon-intron don_prob="0.467" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.758" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="79997" e_stop="80581" e_length="585"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.794">
            <gDNA_intron_boundary i_start="80582" i_stop="80668" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80669" e_stop="80702" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.467" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80703" i_stop="80787" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80788" e_stop="80937" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.918">
            <gDNA_intron_boundary i_start="80938" i_stop="81471" i_length="534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81472" e_stop="81561" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81562" i_stop="82268" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82269" e_stop="82334" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.731" acc_prob="0.878">
            <gDNA_intron_boundary i_start="82335" i_stop="82636" i_length="302"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82637" e_stop="82684" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.758">
            <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="82764" e_stop="83360" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79997" stop="80448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80000" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80041" stop="80581"/>
              <exon start="80669" stop="80674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="80549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80053" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
              <exon start="82269" stop="82334"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="83360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80053" stop="80245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80064" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80069" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80149" stop="80447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80152" stop="80581"/>
              <exon start="80669" stop="80679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80174" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80581"/>
              <exon start="80669" stop="80699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80175" stop="80535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80248" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80276" stop="80581"/>
              <exon start="80669" stop="80702"/>
              <exon start="80788" stop="80937"/>
              <exon start="81472" stop="81561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATAGAATCTATGAAATAGTGTATAAGCTATTGTACACAACTTTATCTTATGCTACACCTGATTCGTGAAAGAGTCGGATCACAAGAATCTATCGTACACAGTTTTATTATACGTTTCTTCGAGAGGCTATTTTCAAAAGCTTGAGTTTCAGAAATGGCAACTACCAACCAATCTTAACTTATCGGTTGTGGTATGCCTGCAAAAGAGTCATCCTGTTGATTTTTCCATGGCCTGTATACTCTACTAGCTCTGTTCTACTTCTATTTTCCATCAACTAAAACAAAGAGAGAAACAGAGATGTCTGCCTTGGGTTTAGACTACTGGCTTCAATGGCAAGTCTTTGTTTGTGCTCTAATCTTCATCATACCAACAACAATCGCATTAAGATTCATCATCAACAAGCGGAGAAAAGAAAACGAACCTATTATTATAAAGTCGACTGATCTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTGCTATGGCTTTTATGATTTATCAGACTGTTGTTAACTTAGGATTCTTCGTCTTCCTATTCTACACACA : ATGGACATTTGCTTTAGTTGGGATCTATTTTGCG : CTGGGAACTTTTATATCGGCCCGGGGATGCTGGTTGTATACAACGAATCAGCGCGGAGAAACGGATAAATTTCTTAGAACAACTGCTGAACAGAGTAACTCTGAGCAACAGCTTGGATTTTTGGAAAATTTGATGCTAATTATTTATCAG : ATTTGTGCAGGTGCTGTTATGCTGACAGATATTGTCTTTTGGTGTCTATTGCTCCCATTTATGACGGGTGAAAATTTTAAGCTCACCCTG : CTGATTGGATTAATGCACTCTGTAAATGCTGTATTTCTTCTTCTTGATTCAGTCCTGAGCAATCTT : GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG : GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</gDNA_template>
            <first_frame> I  H  R  I  Y  E  I  V  Y  K  L  L  Y  T  T  L  S  Y  A  T  P  D  S  *  K  S  R  I  T  R  I  Y  R  T  Q  F  Y  Y  T  F  L  R  E  A  I  F  K  S  L  S  F  R  N  G  N  Y  Q  P  I  L  T  Y  R  L  W  Y  A  C  K  R  V  I  L  L  I  F  P  W  P  V  Y  S  T  S  S  V  L  L  L  F  S  I  N  *  N  K  E  R  N  R  D  V  C  L  G  F  R  L  L  A  S  M  A  S  L  C  L  C  S  N  L  H  H  T  N  N  N  R  I  K  I  H  H  Q  Q  A  E  K  R  K  R  T  Y  Y  Y  K  V  D  *  S  V  D  P  L  L  E  K  S  P  S  Y  L  A  S  Q  L  *  S  F  R  F  S  C  Y  G  F  Y  D  L  S  D  C  C  *  L  R  I  L  R  L  P  I  L  H  T  :  M  D  I  C  F  S  W  D  L  F  C   : A  G  N  F  Y  I  G  P  G  M  L  V  V  Y  N  E  S  A  R  R  N  G  *  I  S  *  N  N  C  *  T  E  *  L  *  A  T  A  W  I  F  G  K  F  D  A  N  Y  L  S   : D  L  C  R  C  C  Y  A  D  R  Y  C  L  L  V  S  I  A  P  I  Y  D  G  *  K  F  *  A  H  P   : A  D  W  I  N  A  L  C  K  C  C  I  S  S  S  *  F  S  P  E  Q  S   : C  G  R  I  L  S  W  N  L  T  L  H  G  H  H  C   : G  I  L  A  W  L  W  F  T  S  P  V  M  D  Y  T  S  C  L  S  K  Q  K  T  K  Y  S  Q  D  C  F  H  R  H  F  L  G  R  I  T  E  L  P  V  V  Y  R  K  C  H  V  Q  F  L  K  L  Q  E  C  S  S  W  L  Y  R  S  T  I  G  *  H  G  H  T  *  F  R  P  V  V  F  T  I  M  Y  R  N  I  T  I  L  L  T  F  R  *  R  M  F  K  S  L  Y  V  D  I  *  H  S  W  K  W  H  A  P  H  K  C  M  R  L  C  F  A  N  V  S  Y  R  P  S  Y  G  S  G  V  E  I  A  M  E  K  K  H  T  *  G  E  E  D  Y  N  E  E  T  R  I  Q  G  S  S  C  C  M  Y  K  *  M  K  L  *  *  F  S  T  V  T  P  N  I  K  *  N  F  N  T  N  M  V  P  L  L  A  V  M  R  L  L  K  </first_frame>
            <second_frame>  Y  I  E  S  M  K  *  C  I  S  Y  C  T  Q  L  Y  L  M  L  H  L  I  R  E  R  V  G  S  Q  E  S  I  V  H  S  F  I  I  R  F  F  E  R  L  F  S  K  A  *  V  S  E  M  A  T  T  N  Q  S  *  L  I  G  C  G  M  P  A  K  E  S  S  C  *  F  F  H  G  L  Y  T  L  L  A  L  F  Y  F  Y  F  P  S  T  K  T  K  R  E  T  E  M  S  A  L  G  L  D  Y  W  L  Q  W  Q  V  F  V  C  A  L  I  F  I  I  P  T  T  I  A  L  R  F  I  I  N  K  R  R  K  E  N  E  P  I  I  I  K  S  T  D  L  W  I  P  C  W  R  N  L  H  P  I  W  L  L  S  F  R  A  S  A  L  V  A  M  A  F  M  I  Y  Q  T  V  V  N  L  G  F  F  V  F  L  F  Y  T  Q :   W  T  F  A  L  V  G  I  Y  F  A  :  L  G  T  F  I  S  A  R  G  C  W  L  Y  T  T  N  Q  R  G  E  T  D  K  F  L  R  T  T  A  E  Q  S  N  S  E  Q  Q  L  G  F  L  E  N  L  M  L  I  I  Y  Q  :  I  C  A  G  A  V  M  L  T  D  I  V  F  W  C  L  L  L  P  F  M  T  G  E  N  F  K  L  T  L  :  L  I  G  L  M  H  S  V  N  A  V  F  L  L  L  D  S  V  L  S  N  L  :  V  A  V  S  F  L  G  T  *  H  S  M  G  T  I  V  :  V  F  W  H  G  S  G  S  H  P  L  L  W  T  I  R  V  A  Y  Q  S  K  R  P  N  I  L  K  I  V  S  T  G  I  S  *  V  V  L  L  S  F  L  L  F  I  E  S  V  M  F  N  F  *  N  F  K  N  V  V  L  G  Y  I  G  V  L  *  D  N  T  V  T  H  S  L  D  Q  W  C  S  L  L  C  I  E  T  *  L  F  Y  L  L  F  D  K  G  C  S  N  H  S  M  W  I  Y  N  T  H  G  N  G  M  P  L  T  N  A  C  A  F  V  L  L  T  Y  R  I  V  H  L  M  A  V  G  L  R  L  Q  W  R  R  S  I  L  E  V  R  K  T  I  M  K  K  Q  E  F  K  V  V  V  V  V  C  I  N  K  *  N  C  N  N  F  P  Q  L  H  Q  I  S  N  K  T  S  T  L  I  W  C  L  F  W  L  S  *  D  C  S  K </second_frame>
            <third_frame>   T  *  N  L  *  N  S  V  *  A  I  V  H  N  F  I  L  C  Y  T  *  F  V  K  E  S  D  H  K  N  L  S  Y  T  V  L  L  Y  V  S  S  R  G  Y  F  Q  K  L  E  F  Q  K  W  Q  L  P  T  N  L  N  L  S  V  V  V  C  L  Q  K  S  H  P  V  D  F  S  M  A  C  I  L  Y  *  L  C  S  T  S  I  F  H  Q  L  K  Q  R  E  K  Q  R  C  L  P  W  V  *  T  T  G  F  N  G  K  S  L  F  V  L  *  S  S  S  Y  Q  Q  Q  S  H  *  D  S  S  S  T  S  G  E  K  K  T  N  L  L  L  *  S  R  L  I  C  G  S  P  V  G  E  I  S  I  L  F  G  F  S  A  L  E  L  P  L  *  L  L  W  L  L  *  F  I  R  L  L  L  T  *  D  S  S  S  S  Y  S  T  H   : N  G  H  L  L  *  L  G  S  I  L  R :   W  E  L  L  Y  R  P  G  D  A  G  C  I  Q  R  I  S  A  E  K  R  I  N  F  L  E  Q  L  L  N  R  V  T  L  S  N  S  L  D  F  W  K  I  *  C  *  L  F  I  R :   F  V  Q  V  L  L  C  *  Q  I  L  S  F  G  V  Y  C  S  H  L  *  R  V  K  I  L  S  S  P  C :   *  L  D  *  C  T  L  *  M  L  Y  F  F  F  L  I  Q  S  *  A  I  L :   W  P  Y  P  F  L  E  L  N  T  P  W  A  P  L  W :   Y  F  G  M  A  L  V  H  I  P  C  Y  G  L  Y  E  L  L  I  K  A  K  D  Q  I  F  S  R  L  F  P  Q  A  F  L  R  S  Y  Y  *  A  S  C  C  L  *  K  V  S  C  S  I  S  K  T  S  R  M  *  F  L  V  I  *  E  Y  Y  R  I  T  R  S  H  I  V  *  T  S  G  V  H  Y  Y  V  S  K  H  N  Y  F  T  Y  F  S  I  K  D  V  Q  I  T  L  C  G  Y  I  T  L  M  E  M  A  C  P  S  Q  M  H  A  P  L  F  C  *  R  I  V  S  S  I  L  W  Q  W  G  *  D  C  N  G  E  E  A  Y  L  R  *  G  R  L  *  *  R  N  K  N  S  R  *  *  L  L  Y  V  *  I  N  E  I  V  I  I  F  H  S  Y  T  K  Y  Q  I  K  L  Q  H  *  Y  G  A  S  F  G  C  H  E  I  A  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80220" stop="80581"/>
                    <exon start="80669" stop="80702"/>
                    <exon start="80788" stop="80937"/>
                    <exon start="81472" stop="81561"/>
                    <exon start="82269" stop="82334"/>
                    <exon start="82637" stop="82663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHGLYTLLALFYFYFPSTKTKRETEMSALGLDYWLQWQVFVCALIFIIPTTIALRFIINKRRKENEPIIIKSTDLWIPCWRNLHPIWLLSFRASALVAMAFMIYQTVVNLGFFVFLFYTQWTFALVGIYFALGTFISARGCWLYTTNQRGETDKFLRTTAEQSNSEQQLGFLENLMLIIYQICAGAVMLTDIVFWCLLLPFMTGENFKLTLLIGLMHSVNAVFLLLDSVLSNLVAVSFLGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83028" stop="83267"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFYLLFDKGCSNHSMWIYNTHGNGMPLTNACAFVLLTYRIVHLMAVGLRLQWRRSILEVRKTIMKKQEFKVVVVVCINK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="82454" e_stop="82546"/>
            <exon e_start="82637" e_stop="82684"/>
            <exon e_start="82764" e_stop="82871"/>
            <exon e_start="83164" e_stop="83360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.710" acc_prob="0.878" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="82454" e_stop="82546" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.710" acc_prob="0.878">
            <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82637" e_stop="82684" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.758">
            <gDNA_intron_boundary i_start="82685" i_stop="82763" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82764" e_stop="82871" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="82872" i_stop="83163" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="83164" e_stop="83360" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82454" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82509" stop="82546"/>
              <exon start="82637" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82669" stop="82684"/>
              <exon start="82764" stop="82871"/>
              <exon start="83164" stop="83357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAATTTACTTGGTTTGGTATCACTTATTTTATACTATGGAGCTGTTCTTATATTGTTTTCCAGTGGAGTCTACATGTGTGCTGCTTATCTTG : GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTG : GTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAG : TGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACACTAATATGGTGCCTCTTTTGGCTGTCATGAGATTGCTCAAAA</gDNA_template>
            <first_frame> A  I  Y  L  V  W  Y  H  L  F  Y  T  M  E  L  F  L  Y  C  F  P  V  E  S  T  C  V  L  L  I  L  :  V  A  V  S  F  L  G  T  *  H  S  M  G  T  I  V  :  V  F  W  H  G  S  G  S  H  P  L  L  W  T  I  R  V  A  Y  Q  S  K  R  P  N  I  L  K  I  V  S  T  G  I  S  *  :  W  G  *  D  C  N  G  E  E  A  Y  L  R  *  G  R  L  *  *  R  N  K  N  S  R  *  *  L  L  Y  V  *  I  N  E  I  V  I  I  F  H  S  Y  T  K  Y  Q  I  K  L  Q  H  *  Y  G  A  S  F  G  C  H  E  I  A  Q   </first_frame>
            <second_frame>  Q  F  T  W  F  G  I  T  Y  F  I  L  W  S  C  S  Y  I  V  F  Q  W  S  L  H  V  C  C  L  S  W :   W  P  Y  P  F  L  E  L  N  T  P  W  A  P  L  W :   Y  F  G  M  A  L  V  H  I  P  C  Y  G  L  Y  E  L  L  I  K  A  K  D  Q  I  F  S  R  L  F  P  Q  A  F  L  S :   G  V  E  I  A  M  E  K  K  H  T  *  G  E  E  D  Y  N  E  E  T  R  I  Q  G  S  S  C  C  M  Y  K  *  M  K  L  *  *  F  S  T  V  T  P  N  I  K  *  N  F  N  T  N  M  V  P  L  L  A  V  M  R  L  L  K  </second_frame>
            <third_frame>   N  L  L  G  L  V  S  L  I  L  Y  Y  G  A  V  L  I  L  F  S  S  G  V  Y  M  C  A  A  Y  L   : G  G  R  I  L  S  W  N  L  T  L  H  G  H  H  C   : G  I  L  A  W  L  W  F  T  S  P  V  M  D  Y  T  S  C  L  S  K  Q  K  T  K  Y  S  Q  D  C  F  H  R  H  F  L   : V  G  L  R  L  Q  W  R  R  S  I  L  E  V  R  K  T  I  M  K  K  Q  E  F  K  V  V  V  V  V  C  I  N  K  *  N  C  N  N  F  P  Q  L  H  Q  I  S  N  K  T  S  T  L  I  W  C  L  F  W  L  S  *  D  C  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82456" stop="82546"/>
                    <exon start="82637" stop="82684"/>
                    <exon start="82764" stop="82871"/>
                    <exon start="83164" stop="83267"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLGLVSLILYYGAVLILFSSGVYMCAAYLGGRILSWNLTLHGHHCGILAWLWFTSPVMDYTSCLSKQKTKYSQDCFHRHFLVGLRLQWRRSILEVRKTIMKKQEFKVVVVVCINK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82455" stop="82546"/>
                    <exon start="82637" stop="82684"/>
                    <exon start="82764" stop="82871"/>
                    <exon start="83164" stop="83200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFTWFGITYFILWSCSYIVFQWSLHVCCLSWWPYPFLELNTPWAPLWYFGMALVHIPCYGLYELLIKAKDQIFSRLFPQAFLSGVEIAMEKKHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="82531" e_stop="82546"/>
            <exon e_start="82637" e_stop="83319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.710" acc_prob="0.878" e_score="0.875"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.875">
            <gDNA_exon_boundary e_start="82531" e_stop="82546" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.710" acc_prob="0.878">
            <gDNA_intron_boundary i_start="82547" i_stop="82636" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="82637" e_stop="83319" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82531" stop="82546"/>
              <exon start="82637" stop="83319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGCTGCTTATCTTG : GTGGCCGTATCCTTTCTTGGAACTTAACACTCCATGGGCACCATTGTGGTAATAACATGCTATCTATGTTCACCTTCTCTACTTCTTTACGATTTGAATACATCCTAAAACGGGCAGTTGGTTTCAGGTATTTTGGCATGGCTCTGGTTCACATCCCCTGTTATGGACTATACGAGTTGCTTATCAAAGCAAAAGACCAAATATTCTCAAGATTGTTTCCACAGGCATTTCTTAGGTCGTATTACTGAGCTTCCTGTTGTTTATAGAAAGTGTCATGTTCAATTTCTAAAACTTCAAGAATGTAGTTCTTGGTTATATAGGAGTACTATAGGATAACACGGTCACACATAGTTTAGACCAGTGGTGTTCACTATTATGTATCGAAACATAACTATTTTACTTACTTTTCGATAAAGGATGTTCAAATCACTCTATGTGGATATATAACACTCATGGAAATGGCATGCCCCTCACAAATGCATGCGCCTTTGTTTTGCTAACGTATCGTATCGTCCATCTTATGGCAGTGGGGTTGAGATTGCAATGGAGAAGAAGCATACTTGAGGTGAGGAAGACTATAATGAAGAAACAAGAATTCAAGGTAGTAGTTGTTGTATGTATAAATAAATGAAATTGTAATAATTTTCCACAGTTACACCAAATATCAAATAAAACTTCAACAC</gDNA_template>
            <first_frame> C  A  A  Y  L   : G  G  R  I  L  S  W  N  L  T  L  H  G  H  H  C  G  N  N  M  L  S  M  F  T  F  S  T  S  L  R  F  E  Y  I  L  K  R  A  V  G  F  R  Y  F  G  M  A  L  V  H  I  P  C  Y  G  L  Y  E  L  L  I  K  A  K  D  Q  I  F  S  R  L  F  P  Q  A  F  L  R  S  Y  Y  *  A  S  C  C  L  *  K  V  S  C  S  I  S  K  T  S  R  M  *  F  L  V  I  *  E  Y  Y  R  I  T  R  S  H  I  V  *  T  S  G  V  H  Y  Y  V  S  K  H  N  Y  F  T  Y  F  S  I  K  D  V  Q  I  T  L  C  G  Y  I  T  L  M  E  M  A  C  P  S  Q  M  H  A  P  L  F  C  *  R  I  V  S  S  I  L  W  Q  W  G  *  D  C  N  G  E  E  A  Y  L  R  *  G  R  L  *  *  R  N  K  N  S  R  *  *  L  L  Y  V  *  I  N  E  I  V  I  I  F  H  S  Y  T  K  Y  Q  I  K  L  Q  H </first_frame>
            <second_frame>  V  L  L  I  L  :  V  A  V  S  F  L  G  T  *  H  S  M  G  T  I  V  V  I  T  C  Y  L  C  S  P  S  L  L  L  Y  D  L  N  T  S  *  N  G  Q  L  V  S  G  I  L  A  W  L  W  F  T  S  P  V  M  D  Y  T  S  C  L  S  K  Q  K  T  K  Y  S  Q  D  C  F  H  R  H  F  L  G  R  I  T  E  L  P  V  V  Y  R  K  C  H  V  Q  F  L  K  L  Q  E  C  S  S  W  L  Y  R  S  T  I  G  *  H  G  H  T  *  F  R  P  V  V  F  T  I  M  Y  R  N  I  T  I  L  L  T  F  R  *  R  M  F  K  S  L  Y  V  D  I  *  H  S  W  K  W  H  A  P  H  K  C  M  R  L  C  F  A  N  V  S  Y  R  P  S  Y  G  S  G  V  E  I  A  M  E  K  K  H  T  *  G  E  E  D  Y  N  E  E  T  R  I  Q  G  S  S  C  C  M  Y  K  *  M  K  L  *  *  F  S  T  V  T  P  N  I  K  *  N  F  N   </second_frame>
            <third_frame>   C  C  L  S  W :   W  P  Y  P  F  L  E  L  N  T  P  W  A  P  L  W  *  *  H  A  I  Y  V  H  L  L  Y  F  F  T  I  *  I  H  P  K  T  G  S  W  F  Q  V  F  W  H  G  S  G  S  H  P  L  L  W  T  I  R  V  A  Y  Q  S  K  R  P  N  I  L  K  I  V  S  T  G  I  S  *  V  V  L  L  S  F  L  L  F  I  E  S  V  M  F  N  F  *  N  F  K  N  V  V  L  G  Y  I  G  V  L  *  D  N  T  V  T  H  S  L  D  Q  W  C  S  L  L  C  I  E  T  *  L  F  Y  L  L  F  D  K  G  C  S  N  H  S  M  W  I  Y  N  T  H  G  N  G  M  P  L  T  N  A  C  A  F  V  L  L  T  Y  R  I  V  H  L  M  A  V  G  L  R  L  Q  W  R  R  S  I  L  E  V  R  K  T  I  M  K  K  Q  E  F  K  V  V  V  V  V  C  I  N  K  *  N  C  N  N  F  P  Q  L  H  Q  I  S  N  K  T  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82531" stop="82546"/>
                    <exon start="82637" stop="82884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CAAYLGGRILSWNLTLHGHHCGNNMLSMFTFSTSLRFEYILKRAVGFRYFGMALVHIPCYGLYELLIKAKDQIFSRLFPQAFLRSYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83028" stop="83267"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFYLLFDKGCSNHSMWIYNTHGNGMPLTNACAFVLLTYRIVHLMAVGLRLQWRRSILEVRKTIMKKQEFKVVVVVCINK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82745" stop="82972"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGQLVSGILAWLWFTSPVMDYTSCLSKQKTKYSQDCFHRHFLGRITELPVVYRKCHVQFLKLQECSSWLYRSTIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="84958" PGL_stop="87534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84958" e_stop="87534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84958" e_stop="87534" e_length="2577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84958" stop="85560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84958" stop="85557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85090" stop="85472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85252" stop="85994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85349" stop="85995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85640" stop="85981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85687" stop="86327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85742" stop="86258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85936" stop="86691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85937" stop="86528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86020" stop="86849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86028" stop="86522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86109" stop="86561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86148" stop="86778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86149" stop="86690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86542" stop="87353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87048" stop="87353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87083" stop="87353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87215" stop="87534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACGTCATGCCTAACGTGAAGAGTCCCCACCTACTTACGATCCGTCGCCGTTTCCTACTGCAGCTCAGATTTCTCTATCATAACATTTGCCATTTCCAGCCTGCAAAGCACATCAACCATAGTATCATGGATTCACAGTCGTCACCACATGGCTCTATTATCTTCTCCACCGTCGGCAGAACCAATTATGGCTTCGACATCTTCTCCATCAAATCTCCATTTTCTTTTCTCAATTCTCCGGTAGAACATCGCCTCACAGACGGTACCTCCATCAATTACAACGGACAGTTTGTCGATGAAGATCAAACACTTGTATTCGTCTCGGAGAGATCAGGTGCTCCTCGCATTTACTTGAGACACCCCTCCTCTCAGGTACAGATGGAACAACTTCCTACTCCCATTGATAGCCTATTTCTCGACCGTCCATTTCTTCGAAATAAACAACTCTACTATATTTCAGCTCATCAGCAACCCAAACAAGTTTTCACCAGCTCGTCCGCTCTTTACTCTACCAATATAGAAGATAATAGTAACATCATCCGCTTGACTCCGTACGGCTGTGTTGATTATAGTCCGGCGATTTCGCAGTCTGGACACCTGATTGCGGTTGCATCGTACGGAGACCGTCGTTGGCCTACTGGTGAATTCCATGATCTGACTACTGATATTGTTGTTTTCCCTGAATCTGACCCAGAAAAGCGGATAGTTGTGTGCCAACACGGTGGCTGGCCAACTTGGTCTGGTGATTCGACTATCTATTTTCACCGACAAGCTGATGATGGTTGGTGGAGCATTTTTAGAGTAGATTTGCTTGAAGATTCACTCAATCTGCGTACTGATCCGATTCGAGTTACTCCTCCTGGTGTGCATTGCTTTACTCCAGCGGCCTCACACAGCTCCAAATCAATGATTGCTATTGCTACCAGAAGACAGGGGACGAAGTATCGCCACATTGAGATTTTCGATGTGGAGTCTCACAAGTTCTATTCGGTGACCGAGTTGCTTAACCCTACCACTCACCATTACAGTCCATTCTTCTCTCCTAAGTCGTCGTTTCTCAGTTATCACCGGTTCCGAGGTGAATCATCATCGGGAGATGCAACAATTCCTTCCTTGGCCCCGATAATTTCTCCAGAAAAAGGACTGAGAATGCTGAGGCTTAATGGATCATTTCCTTCCTTCTCTCCCTCAGGTGACTTTATTGCGTTTAATCATGATTTCAATGCTAATTCAGGCCTCAAAATCATCAAATCAGACGGTTCCAAGAAGTGGACATTGTTCAGAGGCCGTACAGCTTTCTGCAACTCCTGGTCTCCAGCTGAACCCAATGTGATTTTTACGTCAATCGGACCTGTATTCGACTCTGTAAAAGCAACTGTCCAAATAGCACGAGTTTCATTCAATTCATTAAATCTAACTAACGATGATTGCGGAGAAATTCCAGTAGAAATAGAAGTTCTCACAAAAGAGGAGACGGGAAATAATGCCTTCCCTTCCTGCTCGCCAGACGGAAAGCACATTGTATTCCGTTCAGGCCGTTCAGGGCACAAAAATCTGTATATTATGGATTCTGTTAAGGGAGAGCTGGAGGGTGGAGGAATTCGTCAGCTAACAGAGGGGCCATGGATTGATACAATGCCAAGCTGGTCACCTGATGGAAAGCTGATTGCATTTTCTTCCAACAGGCACAATCCGGATAATGTCACTTGCTTCAGCATTTATGTGATTCATCCAAACGGCACAGGTCTTCGTAGGATCCACGTGGCAGGGCCAGAGGGATCTGATGAAGTAGATAAAGAGAGGCTAAACCACGTATGCTTTAGTAAGGACTGTGAATGGCTTCTGTTCACGGGCAACTTGGGTGGAGTAACAGCAGAACCAGTGTCACTGCCAAACCAATACCAACCCTACGGTGACTTATATTTGGTGAAGTTGGATGGGAGTGGGTTGAGACAACTGACATGTAATGCATATGAGAATGGAACTCCGGCATGGCACCCATCAGGTACGCCTATGACTGCTTTGGACATAGAACGGAACGTTATAGTAGGAGATAAGTTGAGGGGTGAATTTGATGATGTACTATGGATGAATTGTTGAGGTAGAACAAAAGTGTCCAGTCAAGAGAAAGATCAATCTGAACTTCAAACAGGTGCTATTGTTGTTCTCTCATTGAGTTCAGATATCATATTATTCGTACGGGCTGACGACAGAAGTATCTCGGCAAAATGATCTGGTCAAGGATTCTTGTATTCTATTTTCGGGTCTCTTACATGTTAAAATAAACATCTCTAGAGAGATTTGATGTAAATTGTTATGGGATAAACGCAATTGATCCTGCAATTTTGAAGGATCAATTGCTTTGGCATGAAGTAAAAGAAAGAAATAATGTTGTTGAGACTTGTGGTCATTATTTATCTAGTATGTACTTATTAAAAATATTGTGAAGATCATAGGTAACAATTCATGATACTCTGTAAATAAAACTATAAAAGAAAGGAAGGAGTAGCTTAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Q  N  V  M  P  N  V  K  S  P  H  L  L  T  I  R  R  R  F  L  L  Q  L  R  F  L  Y  H  N  I  C  H  F  Q  P  A  K  H  I  N  H  S  I  M  D  S  Q  S  S  P  H  G  S  I  I  F  S  T  V  G  R  T  N  Y  G  F  D  I  F  S  I  K  S  P  F  S  F  L  N  S  P  V  E  H  R  L  T  D  G  T  S  I  N  Y  N  G  Q  F  V  D  E  D  Q  T  L  V  F  V  S  E  R  S  G  A  P  R  I  Y  L  R  H  P  S  S  Q  V  Q  M  E  Q  L  P  T  P  I  D  S  L  F  L  D  R  P  F  L  R  N  K  Q  L  Y  Y  I  S  A  H  Q  Q  P  K  Q  V  F  T  S  S  S  A  L  Y  S  T  N  I  E  D  N  S  N  I  I  R  L  T  P  Y  G  C  V  D  Y  S  P  A  I  S  Q  S  G  H  L  I  A  V  A  S  Y  G  D  R  R  W  P  T  G  E  F  H  D  L  T  T  D  I  V  V  F  P  E  S  D  P  E  K  R  I  V  V  C  Q  H  G  G  W  P  T  W  S  G  D  S  T  I  Y  F  H  R  Q  A  D  D  G  W  W  S  I  F  R  V  D  L  L  E  D  S  L  N  L  R  T  D  P  I  R  V  T  P  P  G  V  H  C  F  T  P  A  A  S  H  S  S  K  S  M  I  A  I  A  T  R  R  Q  G  T  K  Y  R  H  I  E  I  F  D  V  E  S  H  K  F  Y  S  V  T  E  L  L  N  P  T  T  H  H  Y  S  P  F  F  S  P  K  S  S  F  L  S  Y  H  R  F  R  G  E  S  S  S  G  D  A  T  I  P  S  L  A  P  I  I  S  P  E  K  G  L  R  M  L  R  L  N  G  S  F  P  S  F  S  P  S  G  D  F  I  A  F  N  H  D  F  N  A  N  S  G  L  K  I  I  K  S  D  G  S  K  K  W  T  L  F  R  G  R  T  A  F  C  N  S  W  S  P  A  E  P  N  V  I  F  T  S  I  G  P  V  F  D  S  V  K  A  T  V  Q  I  A  R  V  S  F  N  S  L  N  L  T  N  D  D  C  G  E  I  P  V  E  I  E  V  L  T  K  E  E  T  G  N  N  A  F  P  S  C  S  P  D  G  K  H  I  V  F  R  S  G  R  S  G  H  K  N  L  Y  I  M  D  S  V  K  G  E  L  E  G  G  G  I  R  Q  L  T  E  G  P  W  I  D  T  M  P  S  W  S  P  D  G  K  L  I  A  F  S  S  N  R  H  N  P  D  N  V  T  C  F  S  I  Y  V  I  H  P  N  G  T  G  L  R  R  I  H  V  A  G  P  E  G  S  D  E  V  D  K  E  R  L  N  H  V  C  F  S  K  D  C  E  W  L  L  F  T  G  N  L  G  G  V  T  A  E  P  V  S  L  P  N  Q  Y  Q  P  Y  G  D  L  Y  L  V  K  L  D  G  S  G  L  R  Q  L  T  C  N  A  Y  E  N  G  T  P  A  W  H  P  S  G  T  P  M  T  A  L  D  I  E  R  N  V  I  V  G  D  K  L  R  G  E  F  D  D  V  L  W  M  N  C  *  G  R  T  K  V  S  S  Q  E  K  D  Q  S  E  L  Q  T  G  A  I  V  V  L  S  L  S  S  D  I  I  L  F  V  R  A  D  D  R  S  I  S  A  K  *  S  G  Q  G  F  L  Y  S  I  F  G  S  L  T  C  *  N  K  H  L  *  R  D  L  M  *  I  V  M  G  *  T  Q  L  I  L  Q  F  *  R  I  N  C  F  G  M  K  *  K  K  E  I  M  L  L  R  L  V  V  I  I  Y  L  V  C  T  Y  *  K  Y  C  E  D  H  R  *  Q  F  M  I  L  C  K  *  N  Y  K  R  K  E  G  V  A  *  A  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  K  T  S  C  L  T  *  R  V  P  T  Y  L  R  S  V  A  V  S  Y  C  S  S  D  F  S  I  I  T  F  A  I  S  S  L  Q  S  T  S  T  I  V  S  W  I  H  S  R  H  H  M  A  L  L  S  S  P  P  S  A  E  P  I  M  A  S  T  S  S  P  S  N  L  H  F  L  F  S  I  L  R  *  N  I  A  S  Q  T  V  P  P  S  I  T  T  D  S  L  S  M  K  I  K  H  L  Y  S  S  R  R  D  Q  V  L  L  A  F  T  *  D  T  P  P  L  R  Y  R  W  N  N  F  L  L  P  L  I  A  Y  F  S  T  V  H  F  F  E  I  N  N  S  T  I  F  Q  L  I  S  N  P  N  K  F  S  P  A  R  P  L  F  T  L  P  I  *  K  I  I  V  T  S  S  A  *  L  R  T  A  V  L  I  I  V  R  R  F  R  S  L  D  T  *  L  R  L  H  R  T  E  T  V  V  G  L  L  V  N  S  M  I  *  L  L  I  L  L  F  S  L  N  L  T  Q  K  S  G  *  L  C  A  N  T  V  A  G  Q  L  G  L  V  I  R  L  S  I  F  T  D  K  L  M  M  V  G  G  A  F  L  E  *  I  C  L  K  I  H  S  I  C  V  L  I  R  F  E  L  L  L  L  V  C  I  A  L  L  Q  R  P  H  T  A  P  N  Q  *  L  L  L  L  P  E  D  R  G  R  S  I  A  T  L  R  F  S  M  W  S  L  T  S  S  I  R  *  P  S  C  L  T  L  P  L  T  I  T  V  H  S  S  L  L  S  R  R  F  S  V  I  T  G  S  E  V  N  H  H  R  E  M  Q  Q  F  L  P  W  P  R  *  F  L  Q  K  K  D  *  E  C  *  G  L  M  D  H  F  L  P  S  L  P  Q  V  T  L  L  R  L  I  M  I  S  M  L  I  Q  A  S  K  S  S  N  Q  T  V  P  R  S  G  H  C  S  E  A  V  Q  L  S  A  T  P  G  L  Q  L  N  P  M  *  F  L  R  Q  S  D  L  Y  S  T  L  *  K  Q  L  S  K  *  H  E  F  H  S  I  H  *  I  *  L  T  M  I  A  E  K  F  Q  *  K  *  K  F  S  Q  K  R  R  R  E  I  M  P  S  L  P  A  R  Q  T  E  S  T  L  Y  S  V  Q  A  V  Q  G  T  K  I  C  I  L  W  I  L  L  R  E  S  W  R  V  E  E  F  V  S  *  Q  R  G  H  G  L  I  Q  C  Q  A  G  H  L  M  E  S  *  L  H  F  L  P  T  G  T  I  R  I  M  S  L  A  S  A  F  M  *  F  I  Q  T  A  Q  V  F  V  G  S  T  W  Q  G  Q  R  D  L  M  K  *  I  K  R  G  *  T  T  Y  A  L  V  R  T  V  N  G  F  C  S  R  A  T  W  V  E  *  Q  Q  N  Q  C  H  C  Q  T  N  T  N  P  T  V  T  Y  I  W  *  S  W  M  G  V  G  *  D  N  *  H  V  M  H  M  R  M  E  L  R  H  G  T  H  Q  V  R  L  *  L  L  W  T  *  N  G  T  L  *  *  E  I  S  *  G  V  N  L  M  M  Y  Y  G  *  I  V  E  V  E  Q  K  C  P  V  K  R  K  I  N  L  N  F  K  Q  V  L  L  L  F  S  H  *  V  Q  I  S  Y  Y  S  Y  G  L  T  T  E  V  S  R  Q  N  D  L  V  K  D  S  C  I  L  F  S  G  L  L  H  V  K  I  N  I  S  R  E  I  *  C  K  L  L  W  D  K  R  N  *  S  C  N  F  E  G  S  I  A  L  A  *  S  K  R  K  K  *  C  C  *  D  L  W  S  L  F  I  *  Y  V  L  I  K  N  I  V  K  I  I  G  N  N  S  *  Y  S  V  N  K  T  I  K  E  R  K  E  *  L  K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   K  R  H  A  *  R  E  E  S  P  P  T  Y  D  P  S  P  F  P  T  A  A  Q  I  S  L  S  *  H  L  P  F  P  A  C  K  A  H  Q  P  *  Y  H  G  F  T  V  V  T  T  W  L  Y  Y  L  L  H  R  R  Q  N  Q  L  W  L  R  H  L  L  H  Q  I  S  I  F  F  S  Q  F  S  G  R  T  S  P  H  R  R  Y  L  H  Q  L  Q  R  T  V  C  R  *  R  S  N  T  C  I  R  L  G  E  I  R  C  S  S  H  L  L  E  T  P  L  L  S  G  T  D  G  T  T  S  Y  S  H  *  *  P  I  S  R  P  S  I  S  S  K  *  T  T  L  L  Y  F  S  S  S  A  T  Q  T  S  F  H  Q  L  V  R  S  L  L  Y  Q  Y  R  R  *  *  *  H  H  P  L  D  S  V  R  L  C  *  L  *  S  G  D  F  A  V  W  T  P  D  C  G  C  I  V  R  R  P  S  L  A  Y  W  *  I  P  *  S  D  Y  *  Y  C  C  F  P  *  I  *  P  R  K  A  D  S  C  V  P  T  R  W  L  A  N  L  V  W  *  F  D  Y  L  F  S  P  T  S  *  *  W  L  V  E  H  F  *  S  R  F  A  *  R  F  T  Q  S  A  Y  *  S  D  S  S  Y  S  S  W  C  A  L  L  Y  S  S  G  L  T  Q  L  Q  I  N  D  C  Y  C  Y  Q  K  T  G  D  E  V  S  P  H  *  D  F  R  C  G  V  S  Q  V  L  F  G  D  R  V  A  *  P  Y  H  S  P  L  Q  S  I  L  L  S  *  V  V  V  S  Q  L  S  P  V  P  R  *  I  I  I  G  R  C  N  N  S  F  L  G  P  D  N  F  S  R  K  R  T  E  N  A  E  A  *  W  I  I  S  F  L  L  S  L  R  *  L  Y  C  V  *  S  *  F  Q  C  *  F  R  P  Q  N  H  Q  I  R  R  F  Q  E  V  D  I  V  Q  R  P  Y  S  F  L  Q  L  L  V  S  S  *  T  Q  C  D  F  Y  V  N  R  T  C  I  R  L  C  K  S  N  C  P  N  S  T  S  F  I  Q  F  I  K  S  N  *  R  *  L  R  R  N  S  S  R  N  R  S  S  H  K  R  G  D  G  K  *  C  L  P  F  L  L  A  R  R  K  A  H  C  I  P  F  R  P  F  R  A  Q  K  S  V  Y  Y  G  F  C  *  G  R  A  G  G  W  R  N  S  S  A  N  R  G  A  M  D  *  Y  N  A  K  L  V  T  *  W  K  A  D  C  I  F  F  Q  Q  A  Q  S  G  *  C  H  L  L  Q  H  L  C  D  S  S  K  R  H  R  S  S  *  D  P  R  G  R  A  R  G  I  *  *  S  R  *  R  E  A  K  P  R  M  L  *  *  G  L  *  M  A  S  V  H  G  Q  L  G  W  S  N  S  R  T  S  V  T  A  K  P  I  P  T  L  R  *  L  I  F  G  E  V  G  W  E  W  V  E  T  T  D  M  *  C  I  *  E  W  N  S  G  M  A  P  I  R  Y  A  Y  D  C  F  G  H  R  T  E  R  Y  S  R  R  *  V  E  G  *  I  *  *  C  T  M  D  E  L  L  R  *  N  K  S  V  Q  S  R  E  R  S  I  *  T  S  N  R  C  Y  C  C  S  L  I  E  F  R  Y  H  I  I  R  T  G  *  R  Q  K  Y  L  G  K  M  I  W  S  R  I  L  V  F  Y  F  R  V  S  Y  M  L  K  *  T  S  L  E  R  F  D  V  N  C  Y  G  I  N  A  I  D  P  A  I  L  K  D  Q  L  L  W  H  E  V  K  E  R  N  N  V  V  E  T  C  G  H  Y  L  S  S  M  Y  L  L  K  I  L  *  R  S  *  V  T  I  H  D  T  L  *  I  K  L  *  K  K  G  R  S  S  L  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84958" stop="87060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2100</number_coding_nucleotides>
                  <number_encoded_amino_acids>700</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNVMPNVKSPHLLTIRRRFLLQLRFLYHNICHFQPAKHINHSIMDSQSSPHGSIIFSTVGRTNYGFDIFSIKSPFSFLNSPVEHRLTDGTSINYNGQFVDEDQTLVFVSERSGAPRIYLRHPSSQVQMEQLPTPIDSLFLDRPFLRNKQLYYISAHQQPKQVFTSSSALYSTNIEDNSNIIRLTPYGCVDYSPAISQSGHLIAVASYGDRRWPTGEFHDLTTDIVVFPESDPEKRIVVCQHGGWPTWSGDSTIYFHRQADDGWWSIFRVDLLEDSLNLRTDPIRVTPPGVHCFTPAASHSSKSMIAIATRRQGTKYRHIEIFDVESHKFYSVTELLNPTTHHYSPFFSPKSSFLSYHRFRGESSSGDATIPSLAPIISPEKGLRMLRLNGSFPSFSPSGDFIAFNHDFNANSGLKIIKSDGSKKWTLFRGRTAFCNSWSPAEPNVIFTSIGPVFDSVKATVQIARVSFNSLNLTNDDCGEIPVEIEVLTKEETGNNAFPSCSPDGKHIVFRSGRSGHKNLYIMDSVKGELEGGGIRQLTEGPWIDTMPSWSPDGKLIAFSSNRHNPDNVTCFSIYVIHPNGTGLRRIHVAGPEGSDEVDKERLNHVCFSKDCEWLLFTGNLGGVTAEPVSLPNQYQPYGDLYLVKLDGSGLRQLTCNAYENGTPAWHPSGTPMTALDIERNVIVGDKLRGEFDDVLWMNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="86925" PGL_stop="85687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86925" e_stop="86582"/>
            <exon e_start="86068" e_stop="85687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86925" e_stop="86582" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86581" i_stop="86069" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="86068" e_stop="85687" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86925" stop="86582"/>
              <exon start="86068" stop="85687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698503" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATGTCAGTTGTCTCAACCCACTCCCATCCAACTTCACCAAATATAAGTCACCGTAGGGTTGGTATTGGTTTGGCAGTGACACTGGTTCTGCTGTTACTCCACCCAAGTTGCCCGTGAACAGAAGCCATTCACAGTCCTTACTAAAGCATACGTGGTTTAGCCTCTCTTTATCTACTTCATCAGATCCCTCTGGCCCTGCCACGTGGATCCTACGAAGACCTGTGCCGTTTGGATGAATCACATAAATGCTGAAGCAAGTGACATTATCCGGATTGTGCCTGTTGGAAGAAAATGCAATCAGCTTTCCATCAGGTGACCAGCTTGGCATTGTATCAATCCATG : GAATTGTTGCATCTCCCGATGATGATTCACCTCGGAACCGGTGATAACTGAGAAACGACGACTTAGGAGAGAAGAATGGACTGTAATGGTGAGTGGTAGGGTTAAGCAACTCGGTCACCGAATAGAACTTGTGAGACTCCACATCGAAAATCTCAATGTGGCGATACTTCGTCCCCTGTCTTCTGGTAGCAATAGCAATCATTGATTTGGAGCTGTGTGAGGCCGCTGGAGTAAAGCAATGCACACCAGGAGGAGTAACTCGAATCGGATCAGTACGCAGATTGAGTGAATCTTCAAGCAAATCTACTCTAAAAATGCTCCACCAACCATCATCAGCTTGTCGGTGAAAATAGATAGTCGAATCACCAGACCAAGTTGGCCA</gDNA_template>
            <first_frame> T  C  Q  L  S  Q  P  T  P  I  Q  L  H  Q  I  *  V  T  V  G  L  V  L  V  W  Q  *  H  W  F  C  C  Y  S  T  Q  V  A  R  E  Q  K  P  F  T  V  L  T  K  A  Y  V  V  *  P  L  F  I  Y  F  I  R  S  L  W  P  C  H  V  D  P  T  K  T  C  A  V  W  M  N  H  I  N  A  E  A  S  D  I  I  R  I  V  P  V  G  R  K  C  N  Q  L  S  I  R  *  P  A  W  H  C  I  N  P  W :   N  C  C  I  S  R  *  *  F  T  S  E  P  V  I  T  E  K  R  R  L  R  R  E  E  W  T  V  M  V  S  G  R  V  K  Q  L  G  H  R  I  E  L  V  R  L  H  I  E  N  L  N  V  A  I  L  R  P  L  S  S  G  S  N  S  N  H  *  F  G  A  V  *  G  R  W  S  K  A  M  H  T  R  R  S  N  S  N  R  I  S  T  Q  I  E  *  I  F  K  Q  I  Y  S  K  N  A  P  P  T  I  I  S  L  S  V  K  I  D  S  R  I  T  R  P  S  W  P </first_frame>
            <second_frame>  H  V  S  C  L  N  P  L  P  S  N  F  T  K  Y  K  S  P  *  G  W  Y  W  F  G  S  D  T  G  S  A  V  T  P  P  K  L  P  V  N  R  S  H  S  Q  S  L  L  K  H  T  W  F  S  L  S  L  S  T  S  S  D  P  S  G  P  A  T  W  I  L  R  R  P  V  P  F  G  *  I  T  *  M  L  K  Q  V  T  L  S  G  L  C  L  L  E  E  N  A  I  S  F  P  S  G  D  Q  L  G  I  V  S  I  H   : G  I  V  A  S  P  D  D  D  S  P  R  N  R  *  *  L  R  N  D  D  L  G  E  K  N  G  L  *  W  *  V  V  G  L  S  N  S  V  T  E  *  N  L  *  D  S  T  S  K  I  S  M  W  R  Y  F  V  P  C  L  L  V  A  I  A  I  I  D  L  E  L  C  E  A  A  G  V  K  Q  C  T  P  G  G  V  T  R  I  G  S  V  R  R  L  S  E  S  S  S  K  S  T  L  K  M  L  H  Q  P  S  S  A  C  R  *  K  *  I  V  E  S  P  D  Q  V  G   </second_frame>
            <third_frame>   M  S  V  V  S  T  H  S  H  P  T  S  P  N  I  S  H  R  R  V  G  I  G  L  A  V  T  L  V  L  L  L  L  H  P  S  C  P  *  T  E  A  I  H  S  P  Y  *  S  I  R  G  L  A  S  L  Y  L  L  H  Q  I  P  L  A  L  P  R  G  S  Y  E  D  L  C  R  L  D  E  S  H  K  C  *  S  K  *  H  Y  P  D  C  A  C  W  K  K  M  Q  S  A  F  H  Q  V  T  S  L  A  L  Y  Q  S  M  :  E  L  L  H  L  P  M  M  I  H  L  G  T  G  D  N  *  E  T  T  T  *  E  R  R  M  D  C  N  G  E  W  *  G  *  A  T  R  S  P  N  R  T  C  E  T  P  H  R  K  S  Q  C  G  D  T  S  S  P  V  F  W  *  Q  *  Q  S  L  I  W  S  C  V  R  P  L  E  *  S  N  A  H  Q  E  E  *  L  E  S  D  Q  Y  A  D  *  V  N  L  Q  A  N  L  L  *  K  C  S  T  N  H  H  Q  L  V  G  E  N  R  *  S  N  H  Q  T  K  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85934" stop="85722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSTSKISMWRYFVPCLLVAIAIIDLELCEAAGVKQCTPGGVTRIGSVRRLSESSSKSTLKMLHQPSSACR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="119817" PGL_stop="120370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119817" e_stop="120370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="119817" e_stop="120370" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119817" stop="120370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTCGTAAGAGAGGGTGAAGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGTCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGACTCCAGAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACTGGGCCTATAATGACAAATGATTAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAATGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  R  K  R  G  *  R  R  G  E  *  T  S  T  E  *  G  I  V  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  D  S  R  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  Y  W  A  Y  N  D  K  *  L  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  M  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  M  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  G  L  S  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  A  P  Q  T  P  E  V  Q  H  A  A  I  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  *  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  S  *  E  R  V  K  K  G  R  M  N  K  Y  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  N  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119818" stop="120132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEEGENEQVQNEGLSPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPAPQTPEVQHAAIVAPRMDASLEIGTFPRLTTGPIMTND*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120133" stop="120369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="121101" PGL_stop="119821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121101" e_stop="119821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="121101" e_stop="119821" e_length="1281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121101" stop="120404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120540" stop="119821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120537" stop="119874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACCGCCCAGGGAAGGCGTAACAATGGGCCCTATCACGTGTTTGGCCGTTGCCCCTACCATGTTGTGTTGTAGTGGCTCCAGATTTCCCATCACCCCGGCCGTTTTGGTGACCACCATTACTTCGGCCACCATGTCTTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTTCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGAAGTGAAGACTGAATTGGTCGGACTGAGTAGCCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAATCTTTTTGATGTCGATGCCATTGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTTCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACATTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTAATCATTTGTCATTATAGGCCCAGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAATAGCCGCATGTTGTACCTCTGGAGTCTGAGGTGCTGGTGCAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCTTCACCCTCTCTTACGACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCT</gDNA_template>
            <first_frame> F  R  P  P  R  E  G  V  T  M  G  P  I  T  C  L  A  V  A  P  T  M  L  C  C  S  G  S  R  F  P  I  T  P  A  V  L  V  T  T  I  T  S  A  T  M  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  K  *  R  L  N  W  S  D  *  V  A  S  *  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  S  F  *  C  R  C  H  C  E  V  I  W  L  H  S  F  H  L  Y  H  E  V  Y  H  F  L  K  G  F  F  R  S  R  Y  L  *  G  *  N  P  Q  F  *  P  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  F  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  F  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  S  H  N  S  R  M  L  Y  L  W  S  L  R  C  W  C  R  K  H  W  R  R  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  *  Q  S  L  I  L  Y  L  F  I  L  P  F  F  T  L  S  Y  D  F  L  S  W  W  R  S  H  R  P  S  T  R  W  A </first_frame>
            <second_frame>  S  D  R  P  G  K  A  *  Q  W  A  L  S  R  V  W  P  L  P  L  P  C  C  V  V  V  A  P  D  F  P  S  P  R  P  F  W  *  P  P  L  L  R  P  P  C  L  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  F  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  *  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  I  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  S  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  L  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  I  A  A  C  C  T  S  G  V  *  G  A  G  A  E  N  T  G  G  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  D  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  P  D  G   </second_frame>
            <third_frame>   Q  T  A  Q  G  R  R  N  N  G  P  Y  H  V  F  G  R  C  P  Y  H  V  V  L  *  W  L  Q  I  S  H  H  P  G  R  F  G  D  H  H  Y  F  G  H  H  V  F  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  S  H  I  H  N  T  L  *  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  E  V  K  T  E  L  V  G  L  S  S  L  L  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  I  F  L  M  S  M  P  L  *  S  H  L  A  S  L  L  P  P  L  S  R  S  L  P  L  L  E  R  I  F  P  *  P  L  P  V  R  L  K  S  A  I  L  T  S  T  P  S  Q  N  G  E  S  S  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  I  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  I  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  I  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  N  H  L  S  L  *  A  Q  *  S  D  E  E  M  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  V  P  L  E  S  E  V  L  V  Q  K  T  L  E  A  L  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  T  I  P  H  S  V  L  V  H  S  P  L  L  H  P  L  L  R  L  P  Q  L  V  E  E  S  P  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121101" stop="120772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRPPREGVTMGPITCLAVAPTMLCCSGSRFPITPAVLVTTITSATMSSRITASTMTTSTSSYWGSITLFWTIPPNMSSLPTSITLSRVKHRSLREVLTGLRWTPNYSLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120611" stop="120330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFSVAATCKAEIRNSDLNPFTKRRILSCGLKQSWVAYLDNARNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="120444" PGL_stop="121838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120444" e_stop="120630"/>
            <exon e_start="121375" e_stop="121838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="120444" e_stop="120630" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120631" i_stop="121374" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="121375" e_stop="121838" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120444" stop="120630"/>
              <exon start="121375" stop="121838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGAGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGAAAAATCCTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTTGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGCGACTACACTTCCAATTCGGTTAGTATCGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGGTGTTTAGCTTTCTTGGCACATCTCAGGGATGACACTATCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTAGATGCGTTTCCCGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGACTCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGTCTCCCGCCGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTAGGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  E  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R  S  G  R  L   : R  C  N  S  W  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  M  G  G  R  L  H  F  Q  F  G  *  Y  R  L  L  S  S  C  *  E  N  G  *  *  G  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  C  F  D  S  P  *  V  S  R  C  V  S  R  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  *  L  G  Y  S  P  H  F  Y  T  P  L  *  N  V  S  R  R  V  K  G  V  K  G  S  T  S  R  V  V  R  E  R  L  H  *  T  K  C  I  S  L  G  C  S  G </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  E  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  S  V  S  I  V  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  I  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  A  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  D  S  G  T  H  P  I  S  I  P  P  Y  R  M  S  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I  R  P  S  A  S  P  W  G  A  P   </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  R  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  K  N  P  F  K  K  W  *  T  S :   M  *  F  L  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  Y  G  R  A  T  T  L  P  I  R  L  V  S  S  P  F  F  V  L  R  E  W  L  V  R  G  V  *  L  S  W  H  I  S  G  M  T  L  S  K  Y  L  Q  L  S  L  F  R  *  S  V  S  F  *  M  R  F  P  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  L  I  L  T  R  V  L  T  P  F  L  Y  P  L  I  E  C  L  P  P  S  *  G  S  *  R  L  N  F  K  S  C  *  G  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120445" stop="120630"/>
                    <exon start="121375" stop="121836"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATEKSFQEVVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNSVSIVSFLRAKRMVSKGCLAFLAHLRDDTIQVPSIESVSIVREFLDAFPADLPGMPPDRDIDFCIDLDSGTHPISIPPYRMSPAELRELKAQLQELLGKGFIRPSASPWGAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121168" e_stop="121828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="121168" e_stop="121828" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121168" stop="121828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCCGACTCCACATTTTCATATGTATCTTCCTCATTTGCTAATGTTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTACGGTGAGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGACTTTTGCAGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTTGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGCGACTACACTTCCAATTCGGTTAGTATCGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGGTGTTTAGCTTTCTTGGCACATCTCAGGGATGACACTATCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTAGATGCGTTTCCCGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGACTCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGTCTCCCGCCGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTAGGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGG</gDNA_template>
            <first_frame> F  D  P  D  S  T  F  S  Y  V  S  S  S  F  A  N  V  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  T  V  S  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  A  G  S  N  T  Y  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  S  V  S  I  V  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  I  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  A  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  D  S  G  T  H  P  I  S  I  P  P  Y  R  M  S  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  P  T  P  H  F  H  M  Y  L  P  H  L  L  M  F  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  *  V  S  L  *  *  L  K  K  Y  I  G  L  V  W  *  L  L  Q  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  L  M  *  F  L  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  Y  G  R  A  T  T  L  P  I  R  L  V  S  S  P  F  F  V  L  R  E  W  L  V  R  G  V  *  L  S  W  H  I  S  G  M  T  L  S  K  Y  L  Q  L  S  L  F  R  *  S  V  S  F  *  M  R  F  P  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  L  I  L  T  R  V  L  T  P  F  L  Y  P  L  I  E  C  L  P  P  S  *  G  S  *  R  L  N  F  K  S  C  *  G  K  A  S  L  D  Q  V  H  L  L  G </second_frame>
            <third_frame>   *  S  R  L  H  I  F  I  C  I  F  L  I  C  *  C  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  Y  G  E  *  V  C  D  S  *  K  S  I  *  V  L  F  G  D  F  C  R  E  Q  Y  L  C  R  L  G  Y  L  R  N  G  *  F  *  C  N  S  W  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  M  G  G  R  L  H  F  Q  F  G  *  Y  R  L  L  S  S  C  *  E  N  G  *  *  G  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  C  F  D  S  P  *  V  S  R  C  V  S  R  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  *  L  G  Y  S  P  H  F  Y  T  P  L  *  N  V  S  R  R  V  K  G  V  K  G  S  T  S  R  V  V  R  E  R  L  H  *  T  K  C  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121168" stop="121827"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPDSTFSYVSSSFANVLNLHCELLDMPIRVSTTVSESVIVEKVYRSCLVTFAGSNTYVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNSVSIVSFLRAKRMVSKGCLAFLAHLRDDTIQVPSIESVSIVREFLDAFPADLPGMPPDRDIDFCIDLDSGTHPISIPPYRMSPAELRELKAQLQELLGKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="122459" PGL_stop="121138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122459" e_stop="121138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="122459" e_stop="121138" e_length="1322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122459" stop="121748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122459" stop="121865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122459" stop="121935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122389" stop="121710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122389" stop="122031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121871" stop="121211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121468" stop="121138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGACACCACGTGACCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTATTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACAACAAATTCGTAATGCTCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACAGGATCTCAAGTCAATCCTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATAGGATATTTGTTCTTAATAGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGGAAACTCCCATCCTTTTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCCTAACAACTCTTGAAGTTGAGCCTTTAACTCCCTTAACTCGGCGGGAGACATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGAGTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCGGGAAACGCATCTAGAAACTCACGGACTATCGAAACAGACTCAATTGAAGGTACTTGGATAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAAACACCCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACTAACCGAATTGGAAGTGTAGTCGCCCTCCCATACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCTGCAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACTCACCGTAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGAACATTAGCAAATGAGGAAGATACATATGAAAATGTGGAGTCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAA</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  D  T  T  *  P  K  K  D  T  E  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  L  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  E  I  T  T  N  S  *  C  S  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  Q  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  I  G  Y  L  F  L  I  V  T  L  F  N  Y  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  F  P  N  N  S  *  S  *  A  F  N  S  L  N  S  A  G  D  I  L  *  G  G  I  E  M  G  *  V  P  E  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  A  S  R  N  S  R  T  I  E  T  D  S  I  E  G  T  W  I  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  L  L  A  R  R  K  E  T  I  L  T  E  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  A  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  L  T  V  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  T  L  A  N  E  E  D  T  Y  E  N  V  E  S  G  S  N  N  T  E  A  M  Q  S  Q  I   </first_frame>
            <second_frame>  N  L  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  T  P  R  D  P  R  R  T  L  N  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  Y  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  K  S  Q  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  *  D  I  C  S  *  *  L  P  C  S  T  T  G  S  L  C  T  S  G  N  S  H  P  F  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  S  L  T  T  L  E  V  E  P  L  T  P  L  T  R  R  E  T  F  Y  K  G  V  *  K  W  G  E  Y  P  S  Q  D  Q  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  R  E  T  H  L  E  T  H  G  L  S  K  Q  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  P  Y  *  P  F  S  *  H  E  E  R  R  R  Y  *  P  N  W  K  C  S  R  P  P  I  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  Q  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  L  Q  K  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  S  P  *  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  E  H  *  Q  M  R  K  I  H  M  K  M  W  S  R  D  Q  I  I  Q  K  P  C  N  H  K  S  </second_frame>
            <third_frame>   I  S  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  W  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  H  H  V  T  Q  E  G  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  I  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  N  H  N  K  F  V  M  L  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  P  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  R  I  F  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  E  T  P  I  L  F  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  E  A  F  P  *  Q  L  L  K  L  S  L  *  L  P  *  L  G  G  R  H  S  I  R  G  Y  R  N  G  V  S  T  R  V  K  I  N  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  G  K  R  I  *  K  L  T  D  Y  R  N  R  L  N  *  R  Y  L  D  S  V  I  P  E  M  C  Q  E  S  *  T  P  L  T  N  H  S  L  S  T  K  K  G  D  D  T  N  R  I  G  S  V  V  A  L  P  Y  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  K  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  C  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  N  I  S  K  *  G  R  Y  I  *  K  C  G  V  G  I  K  *  Y  R  S  H  A  I  T  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122196" stop="121957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGIRKTKRNHNKFVMLIPGPKSSLWHIRCPYFQLMITGSQVNPREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121712" stop="121488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPESRSMQKSISLSGGIPGRSAGNASRNSRTIETDSIEGTWIVSSLRCAKKAKHPLLTILLARRKETILTELEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121337" stop="121140"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPAKVTKQDLYTFSTITDSLTVVETRIGMSSNSQCKLRTLANEEDTYENVESGSNNTEAMQSQI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0095I22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122264" stop="122067"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSLLLFEYISISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKEITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 221 chains have been computed
$ 
$ memory statistics:
$ 212776 bytes spliced alignments in total
$ 103 spliced alignments have been stored
$ 2065 bytes was the average size of a spliced alignment
$ 18024 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 2002 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 244 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:32:35
-->
