<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:45:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720089" ref_strand="+" ref_description="SGN-E720089 [FC09DB08]">
      <seq>gcgattggcggccaatcggccgaattgaaagtagaagactgtaattgtatagttttcatgtctttgttggctaaaatatgaatagaacaagtggtaggtactagggggaaattacccgaagatggcctcaataaaacctagaattgttacacttatgtcccgccttgcttccacagcctcattcgatatctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcaaagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="563" stop="4829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="863" g_stop="1040" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="202" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1041" i_stop="1536" i_length="496">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1537" g_stop="2031" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="697" r_length="495" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2032" i_stop="4420" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4421" g_stop="4529" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="806" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E720089" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="863" e_stop="1040"/>
          <exon e_start="1537" e_stop="2031"/>
          <exon e_start="4421" e_stop="4529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTATCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCATGTAAGTTTAATTTGATGATTAAGTTTTCATATCCATTGATATTTTTCCCTTAATTGTTTCGTCAATCTGTATGGTGTTTAAAATTTGTATGGGTAAATTCAGGGGTAGGGCAAAGACGTCCATTGAAATCCCAAATGGTGTAAAATTACACTGTTTATATCTGGAAGTATATTTTTTTTTTTATGTATATATAGTTGATGTCGGAACTCTTTGAGGTCAAATTTCACAGTTTTTACTTTTTTTTTTTTAAAAAAATTAAATATGTATGTATTGTAGTTTACCCATCAAGCTAATGGGGACTTTTTCAATTGTTGGGCCAACTTTTCCGTTTCGAGAAGCTTCTAATTCTGCAGTTATGATCTTTTGGAACACAAAGACAAACTGCTATATCGTGTTAGTTTTTGGACACATAGGGAAATTTGAATGTTTGACAGTGGTTTGATTTATTTGACATTCTTTGTTTACGTTGTCAAAGCTGATTTTTTTTTTCTTCCAGCAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTC</genome_strand>
        <mrna_strand>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTACCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAAAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718244" ref_strand="+" ref_description="SGN-E718244 [FC04AE01]">
      <seq>tcggccgaattggccttgcttccacagcctcattcgatatctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcaaagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="700" stop="5685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="986" g_stop="1040" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1041" i_stop="1536" i_length="496">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1537" g_stop="2031" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="548" r_length="495" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2032" i_stop="4420" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4421" g_stop="4667" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="795" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5355" g_stop="5385" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="826" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E718244" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="986" e_stop="1040"/>
          <exon e_start="1537" e_stop="2031"/>
          <exon e_start="4421" e_stop="4667"/>
          <exon e_start="5355" e_stop="5385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCATGTAAGTTTAATTTGATGATTAAGTTTTCATATCCATTGATATTTTTCCCTTAATTGTTTCGTCAATCTGTATGGTGTTTAAAATTTGTATGGGTAAATTCAGGGGTAGGGCAAAGACGTCCATTGAAATCCCAAATGGTGTAAAATTACACTGTTTATATCTGGAAGTATATTTTTTTTTTTATGTATATATAGTTGATGTCGGAACTCTTTGAGGTCAAATTTCACAGTTTTTACTTTTTTTTTTTTAAAAAAATTAAATATGTATGTATTGTAGTTTACCCATCAAGCTAATGGGGACTTTTTCAATTGTTGGGCCAACTTTTCCGTTTCGAGAAGCTTCTAATTCTGCAGTTATGATCTTTTGGAACACAAAGACAAACTGCTATATCGTGTTAGTTTTTGGACACATAGGGAAATTTGAATGTTTGACAGTGGTTTGATTTATTTGACATTCTTTGTTTACGTTGTCAAAGCTGATTTTTTTTTTCTTCCAGCAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGA</genome_strand>
        <mrna_strand>TCGGCCGA-AT-TGGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAAAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698045" ref_strand="+" ref_description="SGN-E698045 [FA05AD03]">
      <seq>cgcctatctcctcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcagagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgccagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggcggtgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1231" stop="4843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1537" g_stop="2031" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="515" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2032" i_stop="4420" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4421" g_stop="4543" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="638" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E698045" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1537" e_stop="2031"/>
          <exon e_start="4421" e_stop="4543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGG</genome_strand>
        <mrna_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCCAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGCGGTGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620240" ref_strand="+" ref_description="SGN-E620240 [70939]">
      <seq>atggatacctcttcgattcattaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacgacgcaaacaatgtgcacagcgcagcggatgcacataccatggagaatatacaggaagtggacaatgcacataccatggaaaacatccaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggacacagcagaggtacaagttgcattccttcaggaacagccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagaggtgcaagttgctgaaaaggggtcaggtggtggtgaggaaaagaaatgggctggttggtccggagaaaatgttttcaggatgttagttccgttctcagaaggttggtggtatcattggtcgcaaaggagagtatattaaaacagcatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtttgtccatataaaagtggcttactctaaaagaaccaaagatccagaatggtgccatcaacattgagcatgtccagtgctggaagtccttctgaccatctgtcagaattaccttatccggacatcaatatccagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1231" stop="3500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1537" g_stop="2031" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="529" r_length="508" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2032" i_stop="3061" i_length="1030">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3062" g_stop="3200" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="668" r_length="139" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E620240" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1537" e_stop="2031"/>
          <exon e_start="3062" e_stop="3200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATA-C--GG-G--------GGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCC-TTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGA</genome_strand>
        <mrna_strand>TAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACGACGCAAACAATGTGCACAGCGCAGCGGATGCACATACCATGGAGAATATACAGGAAGTGGACAATGCACATACCATGGAAAACATCCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGACACAGCAGAGGTACAAGTTGCATTCCTTCAGGAACAGCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGGTGCAAGTTGCTGAAAAGGGGTCAGGTGGTGGTGAGGAAAAGAAATGGGCTGGTTGGTCCGGAGAAAATGTTTTCAGGATGTTAGTTCCGTTCTCAGAAGGTTGGTGGTATCATTGGTCGCAAAGGAGAGTATATTAAAACAGCATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCCATATAAAAGTGGCTTACTCTAAAAGAACCAAAGATCCAGAATGGTGCCATCAACATTGAGCATGTCCAGTGCTGGAAGTCCTTCTGACCATCTGTCAGAATTACCTTATCCGGACATCAATATCCAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327359" ref_strand="+" ref_description="SGN-E327359 [cTOC-19-A11]">
      <seq>atctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacaacgcagagaatgtgcacagcgcagcggatggacatacgggggaagtggacaatgcacataccctggaaaacattcaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaccagaggaggtacaagttgcgtttcttcaggaacatccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagagatgcaagttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtttgtccatataaaagtggcttactctagaagaaccaaagatccagactgctgccatcaacattgagcattacaagtgctggaagtccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1231" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1537" g_stop="2031" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="510" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2032" i_stop="3061" i_length="1030">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3062" g_stop="3154" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="603" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E327359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1537" e_stop="2031"/>
          <exon e_start="3062" e_stop="3154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCT</genome_strand>
        <mrna_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445892" ref_strand="+" ref_description="SGN-E445892 [cSTA-19-M13]">
      <seq>tacctcttcaattcatcaaatggcagaagaaagctaccaggaacatgaccttggtaatgtctacgacgcagacaatgtgcacagcgcagcggatgtacataccatggagaatatacaggaagtggacaatgcacataccatggaaaacatccaggaaatggacaatgcacatgagaacttgcttccagaagaggtaaaattggaaacagaagaggtacaagttgcattccttcaggaacagccagtaaaactggaacaagaggaggcacaagttgagtcccttcaggaacatgtgataaaatcggaaccagaagaggtgcaagttgctgaaaatggttcaggtgatggtgaggaaaaaaaatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtatcattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1231" stop="2314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1537" g_stop="2014" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="506" r_length="490" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E445892" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1537" e_stop="2014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATA-C--GG-G--------GGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATG</genome_strand>
        <mrna_strand>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACGACGCAGACAATGTGCACAGCGCAGCGGATGTACATACCATGGAGAATATACAGGAAGTGGACAATGCACATACCATGGAAAACATCCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAAACAGAAGAGGTACAAGTTGCATTCCTTCAGGAACAGCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGGTGCAAGTTGCTGAAAATGGTTCAGGTGATGGTGAGGAAAAAAAATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATCATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210680" ref_strand="+" ref_description="SGN-E210680 [cLEC-68-P15]">
      <seq>gttgctgaaaacggttcaggtggtggtgaggaaaaaagatggcctggttggcccggagaaaatgttttcaggatgttagttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagcttgtgtgcaggtttgtccatataaaagtggcttactctagaagaaccaaagatccagactgctgccatcaacattgagcattacaagtgctggaagtccttctgacaatctgtcaaaattaccttatctggccatcaatatccagaagattgcaccgtgtctggtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaagggaatttttagtagatcgcagtgtaattggattatttgagaaattatgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1531" stop="5807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1831" g_stop="2031" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2032" i_stop="3052" i_length="1021">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3053" g_stop="3214" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="363" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3215" i_stop="4420" i_length="1206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4421" g_stop="4667" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="610" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5355" g_stop="5502" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="758" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5503" i_stop="5587" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5588" g_stop="5595" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="766" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E210680" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1831" e_stop="2031"/>
          <exon e_start="3053" e_stop="3214"/>
          <exon e_start="4421" e_stop="4667"/>
          <exon e_start="5355" e_stop="5502"/>
          <exon e_start="5588" e_stop="5595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAAT</genome_strand>
        <mrna_strand>GTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGGAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATT.....................................................................................ATGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698000" ref_strand="+" ref_description="SGN-E698000 [FA04DG10]">
      <seq>gttccttctcagaaggttggtggtattattggtcgcaaaggagagtatattaaaaagacatgtgaagagacaaaagctcgcattaaggtccttgatggtcctcatggtactaaagaaagagctgtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtcccccctgtttatggcagagatgcttcaatggggagctcatggaaatgcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1609" stop="6143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1909" g_stop="2031" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2032" i_stop="4420" i_length="2389">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4421" g_stop="4667" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="370" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5355" g_stop="5503" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="519" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5504" i_stop="5587" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5588" g_stop="5843" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="777" r_length="258" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E698000" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1909" e_stop="2031"/>
          <exon e_start="4421" e_stop="4667"/>
          <exon e_start="5355" e_stop="5503"/>
          <exon e_start="5588" e_stop="5843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCTGTGAGTTCCTGCTATATCTTGTTATTTGAAGCCTTTATGATTACATGTTATGTGGAGTGCGATTGTCTTCGTATCATGTTATGTACTTATGATAATGTGAAAATTGCCTTTAATATTTCAACTGATGGAGATGAATCAACACCCAAAGGTGTGGTTTACCAGTCAATGAAGGCTAGGTGATTTCTTTTTATTTATATAAGCCATGGTGGATAAAGATAGCAGGGACCTGTGGATTAGACAAAGTTTGGGAAAGATGTCCGAGTACCACTATTATTTTATATTAAAAAAGCTGATCAGAAAACTAAAGTTCTCAATTTGTCGTTGTGCTTCCCTTGTTAAATCTTCTTGGATACTTCCATATATTCTATCCATTCAGACATAGAATAGTATTTAAGTACATCCTAAATCCAGTTTTAATCCCTTAAATCTTGCAGCAGAATGATGATTATTTTATTGTTTGGAGTTGCTAAATGCCCCCACTTAAGTTGGTCTTGGCTTGATGCGCAAGTTGATGGTCAAATGTTCATAAAAATGTCCAAAGTTGAAGCAGCTCTCTCTTATTGAGAGTAGTGTCTTTTTTTCTTAGTTTTATGGTTCTAGCAAACCTGCTCAAAGCATGCTATATTTAGCTAATTCCATTGGTACATCTTATGTAATTCAATATTCTTAGATGTTACTTTGGGCAACTTATATGTCAAATAAAACATCTTCTAATAGTGTTCGAACTTAATGAAATATTCACTTTAAGGTTAGCAATAATTATTGCTGTGAAATTGAAATATAGCTATTAGAAATAAGTTGATAAACATTCATTCTAATTCTAATATAAAATAAATACATTGATAAACGATTAACTAATGAATCTGTAAGTATAGCTAACTTCTAAAATAAAATAAATACATCGGTAAACGATAAACTAACGAATCTAAGTATAACTAACTTCTTGAATGTGGGAAAAAATCAGTCCATCAAACAACCAAAACAATCGGGGGAGTTTCTTTATCATCATAACCAGCATTAGTGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGT-CCCCCTGTTTATGGCAGAGATGCTTCAAT-GGGAGCTCATGGAAATGCACAAC</genome_strand>
        <mrna_strand>GTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCCTGTTTATGGCAGAGATGCTTCAATGGGGAGCTCATGGAAATGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705303" ref_strand="+" ref_description="SGN-E705303 [FA26DA03]">
      <seq>cgggtaagtccttctgacaatctgtcaaaattaccttatctggccatcaatatccagaagattgcaccgtgtctggtgatgatatctgcgagagaagagcctaacctctccattccgcctgctatggatggacttttaaaggtccataagcggataattgatgtggattatgactccaatgctcctggtggtgctgggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagggccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtccccctgtttatggcagagatgcttcaatgggagctcatggaaatgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2841" stop="6519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3141" g_stop="3214" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3215" i_stop="4420" i_length="1206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4421" g_stop="4667" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="322" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5355" g_stop="5503" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="471" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5504" i_stop="5587" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5588" g_stop="5866" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="750" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5867" i_stop="6056" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6057" g_stop="6219" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="913" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E705303" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3141" e_stop="3214"/>
          <exon e_start="4421" e_stop="4667"/>
          <exon e_start="5355" e_stop="5503"/>
          <exon e_start="5588" e_stop="5866"/>
          <exon e_start="6057" e_stop="6219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGG-AAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTGGTAACTTCAAAACTTGGTCGGTTGGTATCTTGCTAGAAGGTGTTAAGCTCCGTAAAAAGCTCCTTAATAAGTTCCATAAAAGAGGAAAGTTTGTATAGCAGACAATCTTTATTACATAAATTCCACAATGAAACAGTTCGGTACTTTTAAACTAGTGTCTACATGTTGGGTGACTGGGTCATTAACAACAAACTAGAATAAAAAATAATATAAATTAACAATGCCTGAAATCTACTATTAGTGTTATCTTCTAACTGATTATGTCCACTGAGCTACTGCAAAGATTAAATGGTCTTGAAAACAGACTGCATTTGCTTCTCTGTTCTCTACCAATAAAATATGACAGTTAAATCTTTTGACATCTTTTAAAGAGTAGTCTTGCACATAATACTTGAAAGGCTTAAAAGTGTATCCTAATGAGTTCACATTTCTTCATTGTTATAAATGTGGATAGTTGCTCATAAAAACATAAAAATCTAGTGAAGAGATATTGATAGACAAAAATTTCTAAAATATGAAATAGAAGTTAATATACCACTAAGCAAATCAAGAGCTATTTACTAGCGCAAATTGTTCAGACAATGTAATGGATTATGTTTTCCTTCTCCGCCCTGTCCTTACTAAAGAAAAAAAAAATAATTAGCTAGATGCATAGACTGCTATTTATAGAAAATTCCAAGAGAATTTTGGTGTAAAAATTTTGTTCCAGATCAAATTTTTCAGGCTTTGCTAGTAAAAAGTGAGAAAGTAATACTTCCTACTTTTACTAAGAGTTCTTAAATAAATACATATACACACAAAAAGAGAAATTTAGAGTTGCTTTTATTTCTTATATTCTACTTTTTTTTAGTGTAGACATTGTCACTACATTCTTTGTCAAGGAATGATAGATTATTTGTAACTGCTGTTCCATTTTAATCAATACTCATACTTGCTTATATCTGTGAGTGTGTGCTAATTCACTTGTCTGTCTTTGTACTTTGTGTTTCACACGTCGAATCTACTTATGTGCATATCCATTGACACTTGACAGAGTATATGCACTGATTCTGCATTCTGTTTTATTTACTATGATTCTAATCTACGCGAAAACATTCTAGGCACTGGCTTTTATGTTTGACGCGATGTAAGTTGTTGGAAGATATAGTGTTTATCTATAACTCTCTTTTGTGCTGACCTTGAATTGTTTATTCTTTTTCATCGAAGGTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCAT</genome_strand>
        <mrna_strand>CGGGTAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGGGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418725" ref_strand="+" ref_description="SGN-E418725 [STM-28-O5]">
      <seq>cgggccccccccataagcggattatacttgtggatcatgactccaatgctcctggtggtgctgggaaaccagcttctactagactacttgtggctgctacacaggctgcaatcctgatcggaaagcaaggtgcaactgttaagtctattcaagatgaatctcgttgcactattcgagtactcggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcagggtcatctaaggaaatttttagttgatcgcagtgtaattggattatttgagaaactaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctacccaaccttggggtccacctccatctagttttcccatgagtgctgggggtcctggatatggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4207" stop="6084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4479" g_stop="4667" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5355" g_stop="5503" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="339" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5504" i_stop="5587" i_length="84">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5588" g_stop="5784" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="536" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E418725" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4479" e_stop="4667"/>
          <exon e_start="5355" e_stop="5503"/>
          <exon e_start="5588" e_stop="5784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCA-GGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCA</genome_strand>
        <mrna_strand>CGGGCCCCCCCCATAAGCGGATTATACTTGTGGATCATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCTACTAGACTACTTGTGGCTGCTACACAGGCTGCAATCCTGATCGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCGTTGCACTATTCGAGTACTCGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGGTCATCTAAGGAAATTTTTAGTTGATCGCAGTGTAATTGGATTATTTGAGAAACTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTACCCAACCTTGGGGTCCACCTCCATCTAGTTTTCCCATGAGTGCTGGGGGTCCTGGATATGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728839" ref_strand="+" ref_description="SGN-E728839 [LA19AE04]">
      <seq>gggaaaccagcttcgactagactacttgttgctgctacacaggctgcaatcctgattggaaagcaaggtgcaactgttaagtctattcaagatgaatctcattgcactattcgagtacttggaggagagcatctccctgtttttgccctgcctgatgatagtattgttgagatacaaggagagccagcaggcgtgcataaagcagttgaaatgattgcaggtcatctaaggaaatttttagtagatcgcagtgtaattggattatttgagaaattaatgcaaatgccaaatgctcatgcacaccagaatatgcccccgcctggacctaaccaaccttggggtccaccgccgtctagctttcccatgagtgctgggggccctggatacggagccaaccatcagtatatgccgccaccgcgtcaatttgacaattattttccccgagtagacatgcatcaagataagcagcctcatcagggtccccctgtttatggcagagatgcttcaatgggagctcatggaaatgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataatgggtctgcctcacaagtccaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4241" stop="6535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4541" g_stop="4667" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5355" g_stop="5503" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="276" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5504" i_stop="5587" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5588" g_stop="5866" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5867" i_stop="6056" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6057" g_stop="6233" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="731" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E728839" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4541" e_stop="4667"/>
          <exon e_start="5355" e_stop="5503"/>
          <exon e_start="5588" e_stop="5866"/>
          <exon e_start="6057" e_stop="6233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAGGTGATACCTTAATTTCAATGTCTTTTCTTGTGTTGTTTTCTTGAGAATTTGCTGGTTCTGATGCTTGCTGTTCTAAACAACCATGTTAATTGTAATGATATTAACTTGAATTTTACGATACATGGGGCTTTTACTGGCTTTCACTGCTCCTTTTCAATTGCATGTATGGTCATTAAGCATATAAATCCACCACTGATTCAAAATATCTAAAAATTTGTGTCTTGGAACCAGCATATCATAACTCTCTGTAGTAGTATACCCCCTCCATTCCAACTATCTCAAATAAAATAGGAAGTTGTTACAGATCAAAATTCTTCTGCATGTTTACCCTTCCAATAAGGAGAGACAATGTTAGTAATATTTCCCTCTACTTATATTGTATTTTCTTTCAAGGAATGTAAGCACTCTGGAAGCAGGTGTAACTAATCACTAAGTTCTGCATCAGTTGGTTTAGTTTCCTCTTTGAATTATGTTTTTCCCCTTTGAAACATATAACAATCAACGGAAGAACCAGTTTGGACTTTTAAAAAAAGGCTCAGAAGCTGAATATACTGCTGTGTTGTGACTTCAAAATGGTAGCAAGAGTTGTCTGTTCTTAAGTTTTTGTTGTCTTTATTTTGATCTGCTGCTATCCTTTTTGTCCTCCTGGAATTGTTATTTGGAGTTTGATTGCGATTTTTTCTACAGAGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTAGTAAGCATACTATTGATTTTAAAGAATTTACAATCTTATGTGACAATTATCTAGAGAACACATTTCATATTTTCTTTTGCTCAGATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACA</genome_strand>
        <mrna_strand>GGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA....................................................................................ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGAT-AATGGGTCTGCCTCACAAGTCCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248887" ref_strand="+" ref_description="SGN-E248887 [cLEF-49-K18]">
      <seq>cttcaatgggagctcatggaaatgcacaagcacaacagtcaatattttcaaaggtcacacacaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgccttctgcattctcaactgtctctatcacatcttttattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5514" stop="8511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5814" g_stop="5866" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5867" i_stop="6056" i_length="190">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6057" g_stop="6251" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="248" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7863" g_stop="8211" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="597" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E248887" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5814" e_stop="5866"/>
          <exon e_start="6057" e_stop="6251"/>
          <exon e_start="7863" e_stop="8211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTA</genome_strand>
        <mrna_strand>CTTCAATGGGAGCTCATGGAAATGCACAAGCACAACAGTCAATATTTTCAAAG..............................................................................................................................................................................................GTCACACACAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGCCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278658" ref_strand="+" ref_description="SGN-E278658 [cLER-10-J7]">
      <seq>tgggagcggatggagctgcacaaccacaacaatcaatagtttcaaaggtcacacagaacatacaaatccccttgtcatatgccgatgctgttattggggcttctggttcaaatattagttatattcgtcgggccagtggtgcaactattgtattacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtgtgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggagggagctaccggtattaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5520" stop="8338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5820" g_stop="5866" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5867" i_stop="6056" i_length="190">
            <donor d_prob="0.995" d_score="0.91"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6057" g_stop="6251" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="242" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7863" g_stop="8038" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="418" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E278658" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5820" e_stop="5866"/>
          <exon e_start="6057" e_stop="6251"/>
          <exon e_start="7863" e_stop="8038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAGGTGCACTTTCTCCTTCTTTAACCTGTTCAGCTCAGATATATTGGCATGTCACTATAATCTTGCGCCCTTTAGTAGTGTGTTTTGCTGATTAAAAGATTTGTTTTCTTTTTATTCATTTACTGTCCTCCCACAAAAAAAAAATCCTACTTTTGCTCCTTGTTTTTTTAATTTTAACTTTTTCTCTATAAAGGTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAG</genome_strand>
        <mrna_strand>TGGGAGCGGATGGAGCTGCACAACCACAACAATCAATAGTTTCAAAG..............................................................................................................................................................................................GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGTATTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTGTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGGAGCTACCGGTATTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442717" ref_strand="-" ref_description="SGN-E442717 [cSTA-34-N3]">
      <seq>agtggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcgatcgctgatgctaccagttcaatgcagaacaccgcggctggaccaccttcccaaggttataatccctacccatctcagggtcatgtgtactcttcatcaactggtcatgcgccatccacagattatggttctgtttatggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaagtatgagtcctcagctgttgggaaattttagctctttagttacgctgtatcatgatttctagtagttgagaagtgaatctgatttgtcctgtttaatttcttgtcttctgcattctcaactgtcatcacatttttttatttttaccattatataactagtgaaatcaaattcaaaaactaatgctaggtgcttctccattactattaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5844" stop="81205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6144" g_stop="6251" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8272" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="508" r_length="400" r_score="0.876"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8273" i_stop="8607" i_length="335">
            <donor d_prob="0.000" d_score="0.72"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8608" g_stop="8628" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="529" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E442717" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442717" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6144" e_stop="6251"/>
          <exon e_start="7863" e_stop="8272"/>
          <exon e_start="8608" e_stop="8628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACA-TCTTTTATTTTTACCA--ATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATTGTATCTCCTCTTTGATAAGCTTGACGTCATCTCCTCCTTATGTCCAATTTCTTTTGCTAATCTTGTTTGATGCTTCGTAATTCTACAGTGAGGTTTGAAGTAATTTTAATCCTACTTGAAAATCTCCTTTCTTGCCAATTGAGGCTTGAAGAGGTAGGTAGATAAGGAGCAACACTTCAGGCCAGATTGTAAATTCTCAGTACAAGGGGAAGAAATATAAGAAAATGTGATCCCATGTCATTTGACCAAAAAGGAGTCAAGTTTCCCATACTAAAACCAACACAAAATTGAACTATCCAATCCAACTAACAAATACAAGCAGCATCCAAATTTGGAAGAATAAAAGATAAGAAATC</genome_strand>
        <mrna_strand>AGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGATCGCTGATGCTACCAGTTCAATGCAGAACACCGCGGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCATCTCAGGGTCATGTGTACTCTTCAT-CA------A--CTGGTCATGCGCCATCCACAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAAGTATGAGTCCTCAGCTGTTGGGAAATTTTAGCTCTTTAGTTACGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGTCCTGTTTAATTTCTTGTCTTCTGCATTCTCAACTG--TC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTGAAATCAAATTCAAAAACTAATGCTA-GGTGCTTCTCCATTACTATT...............................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357489" ref_strand="+" ref_description="SGN-E357489 [cTOS-23-E12]">
      <seq>tggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5846" stop="8546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6146" g_stop="6251" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8249" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="493" r_length="387" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E357489" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6146" e_stop="6251"/>
          <exon e_start="7863" e_stop="8249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGC</genome_strand>
        <mrna_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354246" ref_strand="+" ref_description="SGN-E354246 [cTOS-16-B13]">
      <seq>tggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5846" stop="8546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6146" g_stop="6251" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8248" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="492" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E354246" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6146" e_stop="6251"/>
          <exon e_start="7863" e_stop="8248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATG</genome_strand>
        <mrna_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349594" ref_strand="+" ref_description="SGN-E349594 [cTOS-1-B4]">
      <seq>tggtgcaactattgcagtacaggaaacgaggggtgttcctggtgagatgactgttgagataaatgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5846" stop="8542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6146" g_stop="6251" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8245" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="489" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E349594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6146" e_stop="6251"/>
          <exon e_start="7863" e_stop="8245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTA</genome_strand>
        <mrna_strand>TGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372616" ref_strand="+" ref_description="SGN-E372616 [TUS-31-M23](-)">
      <seq>tgggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttaggagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5909" stop="8396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6209" g_stop="6251" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8095" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="276" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E372616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6209" e_stop="6251"/>
          <exon e_start="7863" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</genome_strand>
        <mrna_strand>TGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292196" ref_strand="+" ref_description="SGN-E292196 [cLET-1-H11]">
      <seq>gggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttaggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5910" stop="8396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6210" g_stop="6251" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8095" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="275" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E292196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6210" e_stop="6251"/>
          <exon e_start="7863" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</genome_strand>
        <mrna_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372617" ref_strand="+" ref_description="SGN-E372617 [TUS-31-M23]">
      <seq>gggtctgcatcacaagtccaaacagcacaacaattagttcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttaggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5910" stop="8396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6210" g_stop="6251" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8095" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="275" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E372617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6210" e_stop="6251"/>
          <exon e_start="7863" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</genome_strand>
        <mrna_strand>GGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587282" ref_strand="+" ref_description="SGN-E587282 [78397]">
      <seq>cctcgtgccgaattcggcacgaggcacaagtccaaacagcacaacaattagttcagaattcgatcgctgatgctaccagttcaatgcagaacaccgcggctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatcaactggtcacgctggtcatgcgccatccgcagattatggttctgtttatggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaactatgaatcttcagctgttgggaaattttagctctttagttaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgcttaatttcctgtcttctgcattctcaactgtgtcatcacatttttttatttttaccattatataactagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5920" stop="8526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6223" g_stop="6251" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="56" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7863" g_stop="8226" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="422" r_length="366" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E587282" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6223" e_stop="6251"/>
          <exon e_start="7863" e_stop="8226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCAAACAGCACAACAATTAGTTCAGGTATTATCTCGTACAGTATTGTAAATGTTTCTGATCATTTTTATTATTGAGCTTCAATTGACATTTAAATTAGTCAATGTTCTCGTGATTGTGTCTGCATGTGTGGTAGTGACTAACAAATTGGTTATTGCATTTCTGCTTGCTCTCTTTCATTGAATCTAGTAGTATTACTGTTTCCGGCTACATGATATAGATATAACTCACTGTATTCTTATGAAGAAACTTATTGATTAACATCCATACACTGAAGTTTTGCAGTTTGAAGAATTGCAAACATTCCTATTACTATATTTGTATTCCTCAAGGTAGAAAGTTACTTTTCTGCATTAGAAAGCTGACATGTTTGATGTGGTTGATTAGTGCAAAAACCATTGGGTGTAGTTTGCTCCTTGATTTACCATTTTGATGCCCTTCTGTGGTGGGATTTTGCATTTTTTATTGTAAGTTCGCTTTTGCTGGCACTTTCCCCCCTTCCCCCAATAGTGGTTTTTTGGGTTGCTTAACTAAGAAATCTCTGTGGCTCAGTGTTATGGTCCCCTGCTATGGATTCAGTTATGGGACGCCGCAAGATAAAATTCGAAGTTTTCTTTTTTCTACCCATGGTGCTGGTTTGTTAAGAGAGAACCTGCGATATCTTGAGTTTGAAGTACTCCAAACTTGATTAATTTTCTGCTTAGCTTTCCATTGAGTTTAAATAACTTAAATACAACATTGGTGATTTCCTACTACTACTGAAATGAGAAAGTGGAGGAATAACCTGCTAATAACTACACTGTTACAGAGGACCTATTACAGAGAACAGAAAAATATAATTAATAGCTACTGATTTAATGAACTTCCTGATTAAAACTGTTGGTAGACTAAAACGGTGCTAAAACTCAGTGGCGCATTATTCCAAAGTTGGTGGGTAATGAGTCTTCTCCTTTACCCTTCTTTACTTAACAAGGTTTTTGTCCACAACAGGATTCAAGTATGTGACATGTGCGTAACCCACACATCACACGTTCTCTTACCACTATACCTAAGCACTGGGGCATATAAGAGGATGCTTGCTTTTGCCCCACGAATTCTGTTTTCCTTCATGGAAGCACAATGTAACTAGAGTGGTCTTTGTTGGTGCAGTGGCCTTCACTATGTCCACTTCTCTAGTATTAAACAATTTCATGCTGCCACTTTCAAACAAATGAAACAAGATGTTAACGATCACCAGCAACTTTCCCCTTATTTTTTATGAAAGCCAGTTAATTCATGTTTCTGACTAAAAAATGGAAGTATTCCCTGAAAAGAGAGTAGTTCTTGCCCAAATGCTCAGCCAATTCACAAGACACGTTCAATGTGTCTGCAGAGTAGCAGTAAAATATTGAACATATTAATTTTGATATAAGGGTGTCTGGATTGATGAGATTCAGCAGTTATTAGTAGGAATCTGTCTCTGAAAATATTCTGTTTGTGGTTGTCTTAGGAAAGGGTGATCTTGTTTGCGATGCACTATCTAATTATGAAAACAATTAAAGTGACAAAAATCTAATTATTATTGAAATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTT-ATTTTTACCA--ATATAACTAGTG</genome_strand>
        <mrna_strand>AAGTCCAAACAGCACAACAATTAGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGATCGCTGATGCTACCAGTTCAATGCAGAACACCGCGGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCAACTGGTCACGCTGGTCATGCGCCATCCGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAACTATGAATCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTTAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGCTTAATTTCCTGTCTTCTGCATTCTCAACTGTGTC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232598" ref_strand="+" ref_description="SGN-E232598 [cLEL-5-J5](-)">
      <seq>aattccgtctgtcttactactgagatgtctagatgcatgttaattctgactacccttatttcttatgttgcagaattcaatcgctgatgctaccagctcaatgcagaacactgcagctggaccaccttcccaaggttataatccctacccttctcagggtcctgtgtactcttcatccactggtcacgctggtcatgcgccatctgcagattatggttctgtttatggaggtagctacggttattaaaggatatcccgttcaaaccagcactagaactacgagtcttcagctgttgggaaattttagctctttagtaaagctgtatcatgatttctagtagttgagaagtgaatctgatttgccctgtttagtttcttgtcttctgcattctcaactgtctctatcacatcttttatttttaccaatataactagtgaaatcaaattggaaaactaatgctatttttctgcaagagagatattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7490" stop="81203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7790" g_stop="8274" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8275" i_stop="8610" i_length="336">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8611" g_stop="8626" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="501" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E232598" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7790" e_stop="8274"/>
          <exon e_start="8611" e_stop="8626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATTGTATCTCCTCTTTGATAAGCTTGACGTCATCTCCTCCTTATGTCCAATTTCTTTTGCTAATCTTGTTTGATGCTTCGTAATTCTACAGTGAGGTTTGAAGTAATTTTAATCCTACTTGAAAATCTCCTTTCTTGCCAATTGAGGCTTGAAGAGGTAGGTAGATAAGGAGCAACACTTCAGGCCAGATTGTAAATTCTCAGTACAAGGGGAAGAAATATAAGAAAATGTGATCCCATGTCATTTGACCAAAAAGGAGTCAAGTTTCCCATACTAAAACCAACACAAAATTGAACTATCCAATCCAACTAACAAATACAAGCAGCATCCAAATTTGGAAGAATAAAAGATAAGAAA</genome_strand>
        <mrna_strand>AATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATTGA................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596502" ref_strand="+" ref_description="SGN-E596502 [39985]">
      <seq>ggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaactatgagtcctcagctgttgggaaattttagctctttattacgctgtatcatgatttctagtagttgagaagtgaatctgatttgtcctgtttaatttcttgtcttgtgcattctcaactgtgtcatcacatttttttatttttaccattatataactagtaaaatcaaattcaaaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7716" stop="8546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8016" g_stop="8245" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="232" polyA_stop="245"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E596502" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8016" e_stop="8245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACA-TCTTTTATTTTTACCA--ATATAACTAGTGAAATCAAATTGGAAAACTA</genome_strand>
        <mrna_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAACTATGAGTCCTCAGCTGTTGGGAAATTTTAGCTCTTTA-TTACGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGTCCTGTTTAATTTCTTGTCTTGTGCATTCTCAACTGTGTC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTAAAATCAAATTCAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598473" ref_strand="+" ref_description="SGN-E598473 [74145]">
      <seq>ggaggtagctacggttattaaaggatatccagctcaaaccagcacaagaactatgagtcctcagctgttgggaaattttagctctttagttacgctgtatcatgatttctagtagttgagaagtgaatctgatttgtcctgtttaatttcttgtcttgtgcattctcaactgtgtcatcacatttttttatttttaccattatataactagtaaaatcaaattcaaaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7716" stop="8546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8016" g_stop="8245" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="233" polyA_stop="246"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E598473" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8016" e_stop="8245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACA-TCTTTTATTTTTACCA--ATATAACTAGTGAAATCAAATTGGAAAACTA</genome_strand>
        <mrna_strand>GGAGGTAGCTACGGTTATTAAAGGATATCCAGCTCAAACCAGCACAAGAACTATGAGTCCTCAGCTGTTGGGAAATTTTAGCTCTTTAGTTACGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGTCCTGTTTAATTTCTTGTCTTGTGCATTCTCAACTGTGTC-ATCACATTTTTTTATTTTTACCATTATATAACTAGTAAAATCAAATTCAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232242" ref_strand="-" ref_description="SGN-E232242 [cLEL-5-J5](-)">
      <seq>tttttttttttttttttgggtggctttcttgcagaaagggggcattagttttccaatttgatttcactagttatattggtaaaaataaaagatgtgatagagacagttgagaatgcagaagacaagaaactaaacagggcaaatcagattcacttctcaactactagaaatcatgatacagctttactaaagagctaaaatttcccaacagctgaagactcgtagttctagggctggtttgaacgggatatcctttaataaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51132" stop="7727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9321" g_stop="9300" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.682"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9299" i_stop="8269" i_length="1031">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8268" g_stop="8027" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="264" r_length="242" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E232242" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9321" e_stop="9300"/>
          <exon e_start="8268" e_stop="8027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGTTTCCCTTTTTTGTGGCCATTTCTTTTCTGCTGTCACACTCTTTAACTATTTTGTTTAAGATACAATTAGATTGCTGATACCTTTTCTCAACTTTAATTTTCATCATAAATGTTGTGTTAATTGATGTGTGTCCCCTAGTAGATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTTGTTAGTTGGATTGGATAGTTCAATTTTGTGTTGGTTTTAGTATGGGAAACTTGACTCCTTTTTGGTCAAATGACATGGGATCACATTTTCTTATATTTCTTCCCCTTGTACTGAGAATTTACAATCTGGCCTGAAGTGTTGCTCCTTATCTACCTACCTCTTCAAGCCTCAATTGGCAAGAAAGGAGATTTTCAAGTAGGATTAAAATTACTTCAAACCTCACTGTAGAATTACGAAGCATCAAACAAGATTAGCAAAAGAAATTGGACATAAGGAGGAGATGACGTCAAGCTTATCAAAGAGGAGATACAATATCTCTCTTGCAGAAAAATAGCATTAGTTTTCCAATTTGATTTCACTAGTTATATTGGTAAAAATAAAAGATGTGATAGAGACAGTTGAGAATGCAGAAGACAAGAAACTAAACAGGGCAAATCAGATTCACTTCTCAACTACTAGAAATCATGATACAGCTTTACTAAAGAGCTAAAATTTCCCAACAGCTGAAGACTCGTAGTTCTAGTGCTGGTTTGAACGGGATATCCTTTAATAACCG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGGGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCTTGCAGAAAGGGGGCATTAGTTTTCCAATTTGATTTCACTAGTTATATTGGTAAAAATAAAAGATGTGATAGAGACAGTTGAGAATGCAGAAGACAAGAAACTAAACAGGGCAAATCAGATTCACTTCTCAACTACTAGAAATCATGATACAGCTTTACTAAAGAGCTAAAATTTCCCAACAGCTGAAGACTCGTAGTTCTAGGGCTGGTTTGAACGGGATATCCTTTAATAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315564" ref_strand="+" ref_description="SGN-E315564 [cTOA-22-C22]">
      <seq>tccaaggttaatgttccgatactgggaattttggagaatatgagctactttaaatgcccaaaatgcaatgaatcgtcctttatctttggtcaaggaggagctaggaaaacagctgaggagatgggtctgaaatttcttggtgagataccacttgaagtggagatcagaagcggttccgacgaaggtgttcccattgttatgtcaaaccctgattctgtaatctctcaagtatatggcaatgtggctgaaaaagttgtcatgaggcttgaagaggtagataaggagcaacacttcaggccagatgtatctctttaaatgcgttgatcaagctctccaccaacttgagtgtagtagtaactactagaatccaacccttctaacaaaatcagagaaaaatctagttggctctggatatagagttaaaggaagtccattatcaggagaagttgtgacgccgatgtgcttgctgggagggagcaatcttgttgacttactgagttatcactcaacaattaacactaactgaaagttgcaggaataatgatgtatccttttagctaattgaacccatcttttcaacatgaaaagataatatttacaaatgatgaacatagcgtggattgagaaggtttagtcattctcatctttctaggaaaaaaaggggaaatcaaagatttttcatggattggatttcttatctttatttcttccaattggatgctgcttgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10751" stop="8283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10451" g_stop="10434" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10433" i_stop="9595" i_length="839">
            <donor d_prob="0.734" d_score="0.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9594" g_stop="9469" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="144" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9468" i_stop="9173" i_length="296">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9172" g_stop="8583" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="732" r_length="588" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E315564" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10451" e_stop="10434"/>
          <exon e_start="9594" e_stop="9469"/>
          <exon e_start="9172" e_stop="8583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGTTAATGTTCCGGTATGATCCATACTGAGCTTGCTGTGTACGAGCTTATAACAACAATGAGAGAGTAGGATTAAAATATGGGGCGGAGAAGCAATATTTGTGACTTGCATTGGGTTAGTTGTGAAGTATAAATATGAACTCCTGGATAAAACTTAAAAAAGTATGTGCCTTATTTGATTTATCACTCATAAATAGTGACTTAATGATTGAAATAGCCATCAAACCCCATTACTGGGCCTATGTACTTTTAGTGCTTTACACTCCTCTTCATCTTGTTGATGTGGAATCTAGTAGAGAGCTAAGAAATGTTACCTAGATATCAGATGAATGTTCGATGTTTTAAGAAGTCAGTTTTCATGTTTTTTTATGTTCCATGGGTAATCCCCACACACACACACTAGAATCTAGATCCAAGGATATGACATTGATAACTAGATGCAGAGATATGCAATTTCATCTGTTTGGAACTCCACCTCTTCCATGAAAAAAAGGGAACACTTAAGTGAAACTATGTTGCATGGATAGACTGATATTATGTACCTAAACACAAGACTAAGAACAAAAGGGTAAGGACTCTTATAAAATCGAGCAGAGTCATAACAATGTTGACACTGTTACGTCTTTGAACTGGAACAGTTTGGATACTGACATACTGTTACTCTGAGACGAATTTCAGGCTAACAATATTAATTGAAGTTGGATTGAGAAAATGCTGTTTCCTTACTGCTACCAACCTAATGTATAAATAGAGAAGGCTTAGAATAGATATACATTGAGATATCATGCAGACGCATGCTATAGCTTAATGCATCTATGATATAGTTATAATTAAACAGTTGTTCTTAACACAGATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAGGTATGTCACTGATTATCTTCTCTCTTTTGAATACAAACACTCATGAGCCCCCCTCGATTGGATGCCTAGAAAAGCTTACTGCAGGCACTTCTAGGAAATCTATAATGAAAGGATCCTTAAAATGGTCCCATCACATTCTCATGATGCTTCTTTGTTTCCCTTTTTTGTGGCCATTTCTTTTCTGCTGTCACACTCTTTAACTATTTTGTTTAAGATACAATTAGATTGCTGATACCTTTTCTCAACTTTAATTTTCATCATAAATGTTGTGTTAATTGATGTGTGTCCCCTAGTAGATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTT</genome_strand>
        <mrna_strand>TCCAAGGTTAATGTTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAG........................................................................................................................................................................................................................................................................................................ATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGGGAAATCAAAGATTTTTCATGGATTGGATTTCTTATCTTTATTTCTTCC-AA-TTGGATGCTGCTTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548352" ref_strand="+" ref_description="SGN-E548352 [TUS-60-G14]">
      <seq>caaatacaaagatatttggtcgggaactcagtctaggtggcgctaagtcaggtcccatcagcataaatttttctccgaaggtggaagaagagctgagttttgcttcagattcgtacgaagtacaagcagcgctaggtagttctcaggtttatgggaactcatcaaacgggtatcgaagtgatgaaggtgaagggaaactttacaaggaagaattagatgaacggaaaccaagaaagaggggcagaaagcctgccaatgggagggaagaagcattgaatcatgttgaagcagagaggcaaaggcgtgagaagctaaaccagaggttttatgctttaagagcagttgttccgaatatctcaaagatggataaagcatcgctgcttggagatgcaattgcttatatcacagatctccaggcaagaattagggttttagatgctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgangatttgaaggaaaagctgacagctgctctgtctaaatgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15096" stop="16495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15396" g_stop="16195" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E548352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15396" e_stop="16195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACC</genome_strand>
        <mrna_strand>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGANGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTT-AAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286080" ref_strand="+" ref_description="SGN-E286080 [cLES-13-G8]">
      <seq>aaatacaaagatatttggtcgggaactcagtctaggtggcgctaagtcaggtcccatcagcataaatttttctccgaaggtggaagaagagctgagttttgcttcagattcgtacgaagtacaagcagcgcttggtagttctcaggtttatgggaactcatcaaacgggtatcgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15097" stop="15874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15397" g_stop="15574" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E286080" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15397" e_stop="15574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGT</genome_strand>
        <mrna_strand>AAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTTGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540236" ref_strand="+" ref_description="SGN-E540236 [TUS-60-G14](-)">
      <seq>atggataaagcatcgctgcttggagatgcaattgcttatatcacagatctccaggcaagaattagggttttagatgctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgaggatttgaaggaaaagctgacagctgctctgtctaaatgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaaagacccggtggtcagtatcagtgatcagattgttatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatacaatctaaatgtaagttttggccgagaatggtatctgcttttagaattagaatgaaaacctgcagctgctcaacatgaagtcaatcatgctatgtatgttgtttgtagttgatgcaagttagttcttgtttactggtgattcttatgtgagtggtcagactatcatacttccgtctagtatttacgtatgaacgtcgcataatgtttgagagtttatattaaaaaaaaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15458" stop="81204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15758" g_stop="16519" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16520" i_stop="16793" i_length="274">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16794" g_stop="16821" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="788" r_length="27" r_score="0.679"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E540236" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15758" e_stop="16519"/>
          <exon e_start="16794" e_stop="16821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATTATATCTTTTAGCTGCTTTACTGATGATTGGGGGAATGAATTTGGAATCGGTCCATTCTAGACCATTATCCATTCAATTTTTTTTTTCTGTAGTCACACTCAACCATGTCGGATCCTCCAAAGCTGCACTACTTTTGGAGGAGGATTCGACACACATACAATGACATTTTAGAAGAATTCAATTGCATTTTGAAGGATGACGACCGATAATAATGCGCAGTATTGGCATTTGAGACGAGAAACTATATAAAAATATGGTGTATGGTAGCATGTACAAAAAAAAAAAAACAATGGTAAGAATTG</genome_strand>
        <mrna_strand>ATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATG-TTTGAGAGTTTATATT..................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACT-CGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717090" ref_strand="+" ref_description="SGN-E717090 [FB18DF03]">
      <seq>ctgagaaggagatggtaggcgacaagcaaaagcagcaggttatcctggagattgattttcatcaaagacaagatgatgcagttgtaagagtaggctgccctttgaatgctcaccctgtttctagagttttgaagacatttcaggaacatcaagtggtggcacaagaatccaatgtctcattaacagaaaacggcgaacttgtacacatgttctctatacgagctcctggccctgctgctgaggatttgaaggaaaagctgacagctgctctgtctaagtgatttagatgttcagagaataaggtctaatcatgcaatgtatgttgactgtagttaaatgctagccgttttgctttaaagacccggtggtcagtatcagtgatcagattgttatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatacaatctaaatgtaagttttggccgagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15534" stop="81208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15834" g_stop="16328" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16329" i_stop="16793" i_length="465">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16794" g_stop="16810" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="512" r_length="17" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E717090" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15834" e_stop="16328"/>
          <exon e_start="16794" e_stop="16810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATTATATCTTTTAGCTGCTTTACTGATGATTGGGGGAATGAATTTGGAATCGGTCCATTCTAGACCATTATCCATTCAATTTTTTTTTTCTGTAGTCACACTCAACCATGTCGGATCCTCCAAAGCTGCACTACTTTTGGAGGAGGATTCGACACACATACAATGACATTTTAGAAGAATTCAATTGCATTTTGAAGGATGACGACCGATAATAATGCGCAGTATTGGCATTTGAGACGAGAAACTATATAAAAATATGGTGTATGGTAGCATGTACAAAAAAAAAAAAACAAT</genome_strand>
        <mrna_strand>CTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAGTGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569314" ref_strand="+" ref_description="SGN-E569314 [13734]">
      <seq>ctcagattgctatgctttgctcgattattcgtgtatgagcatcaatgtctagctggtaagtttgcattatattttgttgactatataatctatatgtaagttttggccgagaatggtatctgcttttagaattagaatgaaaacctgcagctgctcaacaatgaagtcgatcatgctatgtatgttgtttgtagttgatgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15915" stop="16715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16214" g_stop="16415" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="214"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E569314" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16214" e_stop="16415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAAC-ATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAA</genome_strand>
        <mrna_strand>CTCAGATTGCTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATATAATCTATATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACAATGAAGTCGATCATGCTATGTATGTTGTTTGTAGTTGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363343" ref_strand="+" ref_description="SGN-E363343 [cLPP-4-B6]">
      <seq>gatcaattaattaaataccttctccgtccatctccgttccgataccggcgattttcgatttctggaattttcacaatttatgcgaccacataacttcatttccttttttcttaatggaaatgcaaaattaattagctctttctcggatataaatgggcattccagtaaatattactgtaggttctcatgtgtggattgaggatccatcagttgcttggattgatgcacaagtatcagaggttaatggacaggaagttcaggttcagacatctgatgggaggacggttgtagcaactttatcaaaaactcaccccaaggatgaagatgctcctgatggaggagtggatgacatgactgaactttcatatttgcatgagcctggagtcttacataatttggcaacaagatatcaactcaacgaaatctatacttatactggaagtattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26603" stop="29687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26903" g_stop="27070" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27071" i_stop="28267" i_length="1197">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28268" g_stop="28396" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="284" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28397" i_stop="29096" i_length="700">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29097" g_stop="29240" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="428" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29241" i_stop="29365" i_length="125">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29366" g_stop="29387" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="450" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E363343" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26903" e_stop="27070"/>
          <exon e_start="28268" e_stop="28396"/>
          <exon e_start="29097" e_stop="29240"/>
          <exon e_start="29366" e_stop="29387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATTAATTAAATACCTTCTCCGTCCATCACTTTATTATTACCGTTCCGACACCGGCGATTTTCGATTTTCTGGAATTTTCACAATTTATGCGACCACATAACTTCATTTCCTTTTTTGCTCAATGGAAATGCAAAATTAATTAGCTCTTTCTCGGATATAAATGGTGAGTCTAACTTTATTTTATGTTACATTTTGTTTGTCATCATCCTTTTATTGGAAAAAATATTCATAGATTAATGAATTAAATTAGAGGTTTGTAGGATCCATTGATCAGATGGCAGAGCTGATATTTTGAGTTTTATGGGTTCTGGAATCTAGAAAACACAGCTTATTTATAAAGGGCTTGACACAAAGCTAGTTGGGTTCTAGCTCTGCCCCGGATTAAGATGTAGTAATTGTATAATATTCATTTGAATTCAGCATCTGAGAATGTAATCTTTTCTGTATGGTTTTAGATTAAGTGGATATTTTGTTGGATTGTATATATACTGAATCCCAGCTACTTTTGGATTGAGAGACAGTAGTTATTTGTTGACAACAGGTTATAGTGATTATGTATGTGGACAATAACTTAAACCAATTATTTGAAGTAGTTTGAAGTCTATGAGTCGAAAGTCTCAACTGCAATGAAAGGCGTGTGTTTGTATGTGTGCACAAGAGAGAGATAGAGGGAGAGCCATAAATCAGTGAATATCATGTGGTTGCTCGGGAGAAGGGAGCATCCTTCTCCCCTCTGTAGAAGACTAATTTATGTTTGTCTAGGAAACTAATATAGGCATGTTACATTATGTTAGAATGCTGCAGTAGCATCGCCCCGGTGACTGATCAACAGAACAATTATACTACAGAAAGAGTAATATTAACTTGTTTGATGTCAGAAAATGTGAACCCTGAAAAGTTGATGGAGAATTATTAACCAATGAAGTTCTGTTGGGTGCGGAAAGGGGCCTATGTTGAGTAAGGGGTGAGAAGGTGCTCAGGCTTTTGCTAAGTTAGATGTAGAGAATTTAAAGCAGGACATCTAGTGATGTACTGCATATCTTATGTTCCTGTACTGTTTTTTAGACTTTTTGTGTGAATGGAATGCAAGTGAATGTTTACAAATACTATTGTAAAGTTCGCATCATGTTACTTAATACATAGGAGCATAACTTGAAACATTCTGGAGCTACAAAGTAGTTATTGAACCCTTAACATTTAGCATTTTACGACACTTACTGATTTTATGTCTGCATATCAGTTTACATGTGGCATCGTCCTATATTTTTTTAGATCGTGCGAATTATATTCTTTTATTATGAGGATGTGAATTATATATTTTTTTCCCTACAGTTAAAAAGAATCTTAATTATCTATGCAGGGCATTCCAGTAAATATTACTGTAGGTTCTCATGTGTGGATTGAGGACCCATCAGTTGCTTGGATTGATGCACAAGTATCGGAGGTTAATGGACAGGAAGTTCAGGTTCAGACATCTGATGGGAGGACGGTACGACAAACTCTTTTACATTGAAAAGTATTCATTCATTAAATTACTGCTGCTTTATTCATTTTCCCATAATAACATTTAGTATTTACGCTGGACTCAGTTGTGTGATCAAGCTCTAGCTTAACGTAAAAACTGGTTTCCTATAGCCTAATTGATTAGATTCTAAAATGACTTGAATTACAGTATTCTGATGATGAAAATTCACAATGTCTTTCAAATACTAAGAATATAATGGATCTAATTTCTATTCTCATTTGAGTTGTTAGTTTTATATTTATATAATACTCACCTGGTCTTTTTTTATGCACGTTATGTAGTTTGCAACTGAATAGTTTTTGTGGCTATCATACCTATATGTATCCATTATCTTCCTTCTATGTTGCTTGGACTCTTCAAAAATGTTGACGTGTGCGCGTCGGATCCTTCTAAAGTAGTGCATTTTTGGAGGATCCGATTCGGGTGCGGCAACAATTTTGGAGAGTCCGAGCGACTTAGTCTTCCTTCTGCATTTTAACAGTATTTTCATTTATCCTTCTTTCAACGAATCTTGGCACGTTATTGTAACTATTCTTATCATATTCTAATGGTAAAAGAAAGATTCACTGCATTTTTTCTAATTTACTGCTATCTAACTATATTTTCTGCTAAGCCACATTGATGCCATCCCCAATTGAAAATAGACATCTTTAATTTCGTCTAGGTTGTAGCAACTTTATCAAAAACTCACCCCAAGGATGAAGATGCTCCAGATGGAGGAGTGGATGACATGACTGAACTTTCATATTTGCATGAGCCTGGAGTCTTACATAATTTGGCAACAAGATATCAACTCAACGAAATCTATGTAAGCTTATAGTCCAATCCTCAAAACTTTATTTAATTTATGTTCAGTTTGGTGAATGAAAGGACTGAAATTGCAGCTACAGATTGCTTTGTCATCATATTAATCATACCCTGAAATCTTGGCAGACTTATACTGGAAGTATTCTTA</genome_strand>
        <mrna_strand>GATCAATTAATTAAATACCTTCTCCGTCCAT--C--------T-CCGTTCCGATACCGGCGATTTTCGA-TTTCTGGAATTTTCACAATTTATGCGACCACATAACTTCATTTCCTTTTTT-CTTAATGGAAATGCAAAATTAATTAGCTCTTTCTCGGATATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCCAGTAAATATTACTGTAGGTTCTCATGTGTGGATTGAGGATCCATCAGTTGCTTGGATTGATGCACAAGTATCAGAGGTTAATGGACAGGAAGTTCAGGTTCAGACATCTGATGGGAGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGCAACTTTATCAAAAACTCACCCCAAGGATGAAGATGCTCCTGATGGAGGAGTGGATGACATGACTGAACTTTCATATTTGCATGAGCCTGGAGTCTTACATAATTTGGCAACAAGATATCAACTCAACGAAATCTAT.............................................................................................................................ACTTATACTGGAAGTATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546887" ref_strand="+" ref_description="SGN-E546887 [TUS-70-H19](-)">
      <seq>aaggcaaaggatcaggaaatagcaaatttgcagaattcaatgcgagacatgcaaagcaaactgagcgaaacagaaacactgcccatcagggaatatgaggctgctccaaaagcagttgaagaagactctttgattgttgataagaaaccaattcttgtggaggatgaagaaatcattgaatctttaactgcagagttgaaaactttaaaggtgttatatcaaaaagaaaagcaacgtgctgatgattctgagaggaaatgtgctgaagttcaagaatcaagtaaagagaagtgccggaagttggaagaaactgaaagaaaagttcaacaacttcaggattcagttaacagatatcttttacaaggagtgctgcttgggatgctatactcacggcgcataacctgaggaagaggggatgcatcattataaccagtttgtatgtgcaagaagaattgagaagacaccaatcatttgctccttcactccaactatgcaacagaaccttggagtaaggtgtattctttgtccaatatctcttgggtactccctagaactaatgcagaaactagcatcttggaggatgaaaatggggagagacgggaggaaaatatggaggttagcaacctatacatcttttggtaaatatgaagagaatggaaaaagggatgcttgggggagttgaaaatcacatggatggtcaagagtttattgtatctatactgtcggtgtaaagaaagcattccattatgtatagacaatggaatggatttttcaaacaccttcgaaattgttgntaacttcggcatcaccttggtgcttattaatgaaatgatttatttgattcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37875" stop="40196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38175" g_stop="38384" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38385" i_stop="38541" i_length="157">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38542" g_stop="38681" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="350" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38682" i_stop="39387" i_length="706">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39388" g_stop="39894" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="858" r_length="508" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E546887" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38175" e_stop="38384"/>
          <exon e_start="38542" e_stop="38681"/>
          <exon e_start="39388" e_stop="39894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAAGGATCAGGAAATAGCAAAATTGCAGAATTCAATGCGAGACATGCAAAGCAAACTGAGCGAAACAGATACACTACCCATCAGGGAATATGAGGCTGCTCCAAAAGCAGTTGAAGAAGACTCTTTGATTGTTGATAAGAAACCAATTCTTGTGGAGGATGAAGAAATCATTGAATCTTTAACTGCAGAGTTGAAAACTTTAAAGGTATGAACAGTCAGCTGAGGATGATCCCCACAACTTTTCAGCTTCACATTCCTCGCCCTAACCCTAAAATGAGTAGAGAAGATAGAGAAAAATAGATGAAAGCTATCATCTTTTTTCTAGTTAATGTTGATGGTCTCATGCTTATACCTATTGATAGGTGTTATATCAAAAAGAAAAGCAACGCGCTGATGATTCTGAGAGGAAATGTGCTGAAGTTCAAGAATCAAGTAAAGAGAAGTGCCGGAAGTTGGAAGAAACTGAAAGAAAAGTTCAACAACTTCAGGATTCAGTTAACAGGTACCTTTACTCGAATAATTGGTACCAGATTTAGTCCTTTCATCCTGTAACAATATAAATCACGAACTCTTGAGTCAATAAACTTATCAACTGTGAAAATGCTCTTTAAAATATACTTTTTTGGGGTGGGGTGGGGTGAGGGGGATATATCTTTTTTCTTGTTCTTTCTGAACCATTTAAAATTGAAATACAAACTTAAGAGTTATATTTCTGAGTGAAATTACCAGCTGTTCTTTCTAACCATTTCATGTGAGGGGGTTAGATTTCAGAAATTAACTGCAGAAACTAATCAGGACTCTTTTACCTAACTCTAACATCATCTTCTGTTTTTAATTGTACAAACCTCATATGAATTTCTTCATAAGATTAATAGGTAAATTGCTCAAAATGTCCCTGAAAGGGTCCTTAAGTTAGTGTCCCTCTGAAGAAATGTGATATGTGTCCTTCAGGAAGATTCTAAAGACATGATGCTATTTGTGTACAATTTTTTAGATTCTAAATGACATGATACTATTTGAATTCAATCATTTATAGATTTCTGTAAGCAGTTCAGTAACTTCAGATTGCTTAACTTCGTTTGCTTTGGAACTGCTCGTCATGGCAAAATGCTCAGCCAAGACAAATAATTGGCATCTCTTTATATTGGCTTATAATATACACATATAAGATAGCATAAACAAATTAGTCTTAATATCATATTTTCTAGATATCTTTTACAAGGAGTGCTGCTTGGGATGCTATACTCACGGCGCATAACCTGAGGAAGAGGGGATGCATCATTATAACCAGTTTGTATGTGCAAGAAGAATTGAGAAGACACCAATCATTTGCTCCTTCACTCCAACTATGCAACAGAACCTTGGAGTAAGGTGTATTCTTTGTCCAATATCTCTTGGGTACTCCCTAGAACTAATGCAGAAACTAGCATCTTGGAGGATGAAAGTGGGGAGAGACGGGAGGAAAATATGGAGGTTAGCAACCTATACATCTTTTGGTAAATATGAAGAGAATGGAAAAAGGGATGCTTGGGAGAGTTGAAAATCACATGGATGGTCATGAGTTTATTGTATCTATACTGTCGGTGTAAAGAAAGCATTCCATTATGTATAGACAATGGAATGGATTTTTCAAACACCTTCGAAATTGTTG-TAACTTCGGCATCACCTTGGTGCTTATTAATGAAATGATTTATTTGATTCATCAAACAAAAAGA</genome_strand>
        <mrna_strand>AAGGCAAAGGATCAGGAAATAGCAAATTTGCAGAATTCAATGCGAGACATGCAAAGCAAACTGAGCGAAACAGAAACACTGCCCATCAGGGAATATGAGGCTGCTCCAAAAGCAGTTGAAGAAGACTCTTTGATTGTTGATAAGAAACCAATTCTTGTGGAGGATGAAGAAATCATTGAATCTTTAACTGCAGAGTTGAAAACTTTAAAG.............................................................................................................................................................GTGTTATATCAAAAAGAAAAGCAACGTGCTGATGATTCTGAGAGGAAATGTGCTGAAGTTCAAGAATCAAGTAAAGAGAAGTGCCGGAAGTTGGAAGAAACTGAAAGAAAAGTTCAACAACTTCAGGATTCAGTTAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTTTACAAGGAGTGCTGCTTGGGATGCTATACTCACGGCGCATAACCTGAGGAAGAGGGGATGCATCATTATAACCAGTTTGTATGTGCAAGAAGAATTGAGAAGACACCAATCATTTGCTCCTTCACTCCAACTATGCAACAGAACCTTGGAGTAAGGTGTATTCTTTGTCCAATATCTCTTGGGTACTCCCTAGAACTAATGCAGAAACTAGCATCTTGGAGGATGAAAATGGGGAGAGACGGGAGGAAAATATGGAGGTTAGCAACCTATACATCTTTTGGTAAATATGAAGAGAATGGAAAAAGGGATGCTTGGGGGAGTTGAAAATCACATGGATGGTCAAGAGTTTATTGTATCTATACTGTCGGTGTAAAGAAAGCATTCCATTATGTATAGACAATGGAATGGATTTTTCAAACACCTTCGAAATTGTTGNTAACTTCGGCATCACCTTGGTGCTTATTAATGAAATGATTTATTTGATTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543049" ref_strand="+" ref_description="SGN-E543049 [TUS-64-K16]">
      <seq>atttagtgtcaaactggtgcaaaaatgtacaaactttgcctgaaagttacatattcccagaagatgaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatcaacatgaccaagctcaacaaataattaaagccagtcaggattttggctattttcaggtaatcaaccatgggatttcagaaacattattggaagagacagtagatgtgttgaaagaattttttgagatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactatgaattactccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctattcaacatttcttgcctttttggccagaaaaaccaactcgttatcgagaagtgattagtgcatattcaattgaaacaaggaagctaatcacaaagatttcagatgtgattagtgaaggattaggacttgaaaaggggtattttggaggtgaattaagcaaagttcaaatgctattagtgaactgttatcctccatgtcctgatccaaatttggcacttggaatgcatagccattgtgacccaaatttgttcacaattttgcttcaagacaatggttgtggcttacaaattttcaaggatggaaaatggattgctgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51690" stop="49926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51390" g_stop="51203" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50499" g_stop="50226" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="713" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E543049" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51390" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50499" e_stop="50226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATAGCCATTGTGACCCAAATTTGTTCACAATTTTGCTTCAAGACAATGTTTGTGGCTTACAAATTTTCAAGGATGGAAAATGGATTGCTGTGGAA</genome_strand>
        <mrna_strand>ATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG.......................................................................................................GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG.............................................................................................................................................................................................................................................................................................................................................................AGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATAGCCATTGTGACCCAAATTTGTTCACAATTTTGCTTCAAGACAATGGTTGTGGCTTACAAATTTTCAAGGATGGAAAATGGATTGCTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575003" ref_strand="+" ref_description="SGN-E575003 [34560]">
      <seq>aaataatttagtgtcaagctggtgcaaaaatgttaaaactttgcctgaaagttacatattcccagaagaacaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatgaacatgaccaagctcaacaaataattaaagccagccaggattttgggtattttcaggtgatcaaccatgggatttcagaaacattattggaagagacaatagatgtgtggattaaattttttaacatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactattaattattccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctctccaacattacttgcctttttggccagaaaaaccaactcgttatcactaatcacaaagatttcagatgtgattagtgaaggattaggacttgaaaagggatatttctggaggtgaattaacgcaaagttcaaatgctattagtgaactattatcctccatgtcctgacccaaattggcccttggaatgcatagccattgtgacccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51695" stop="50001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51395" g_stop="51203" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="444" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50463" i_length="386">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50462" g_stop="50301" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="607" r_length="163" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E575003" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51395" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50462" e_stop="50301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTT-TGGAGGTGAATTAA-GCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATAGCCATTGTGACCCAAAT</genome_strand>
        <mrna_strand>AAATAATTTAGTGTCAAGCTGGTGCAAAAATGTTAAAACTTTGCCTGAAAGTTACATATTCCCAGAAGAACAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATGAACATGACCAAGCTCAACAAATAATTAAAGCCAGCCAGGATTTTGGGTATTTTCAG.......................................................................................................GTGATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAATAGATGTGTGGATTAAATTTTTTAACATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATTAATTATTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTCTCCAACATTACTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCA..................................................................................................................................................................................................................................................................................................................................................................................................CTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGATATTTCTGGAGGTGAATTAACGCAAAGTTCAAATGCTATTAGTGAACTATTATCCTCCATGTCCTGACCCAAA-TTGGCCCTTGGAATGCATAGCCATTGTGACCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307685" ref_strand="+" ref_description="SGN-E307685 [cLEY-16-C7]">
      <seq>tccaatggaaaataatttagtgtcaaactggtgcaaaaatgtacaaactttgcctgaaagttacatattcccagaagatgaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatcaacatgaccaagctcaacaaataattaaagccagtcaggattttggctattttcaggtaatcaaccatgggatttcagaaacattattggaagagacagtagatgtgttgaaagaattttttgagatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactatgaattactccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctattcaacatttcttgcctttttggccagaaaaaccaactcgttatcgagaagtgattagtgcatattcaattgaaacaaggaagctaatcacaaagatttcagatgtgattagtgaaggattaggacttgaaaaggggtattttggaggtgaattaagcaaagttcaaatgctattagtgaactgttatcctccatgtcctgatccaaatttggcacttggaatgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51704" stop="50018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51404" g_stop="51203" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="453" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50499" g_stop="50318" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="635" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E307685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51404" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50499" e_stop="50318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGAAAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATA</genome_strand>
        <mrna_strand>TCCAATGGAAAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG.......................................................................................................GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG.............................................................................................................................................................................................................................................................................................................................................................AGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306931" ref_strand="+" ref_description="SGN-E306931 [cLEY-11-G6]">
      <seq>tttgcctgaaagttacatattcccagaagatgaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatcaacatgaccaagctcaacaaataattaaagccagtcaggattttggctattttcaggtaatcaaccatgggatttcagaaacattattggaagagacagtagatgtgttgaaagaattttttgagatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactatgaattactccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctattcaacatttcttgcctttttggccagaaaaaccaactcgttatcgagaagtgattagtgcatattcaattgaaacaaggaagctaatcacaaagatttcagatgtgattagtgaaggattaggacttgaaaaggggtattttggaggtgaattaagcaaagttcaaatgctattagtgaactgttatcctccatgtcctgatccaaatttggcacttggaatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51656" stop="50019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51356" g_stop="51203" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="405" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50499" g_stop="50319" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="586" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E306931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51356" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50499" e_stop="50319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCAT</genome_strand>
        <mrna_strand>TTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG.......................................................................................................GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG.............................................................................................................................................................................................................................................................................................................................................................AGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302664" ref_strand="+" ref_description="SGN-E302664 [cLEX-1-K4]">
      <seq>cgaggatttagtgtcaaactggtgcaaaaatgtacaaactttgcctgaaagttacatattcccagaagatgaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatcaacatgaccaagctcaacaaataattaaagccagtcaggattttggctattttcaggtaatcaaccatgggatttcagaaacattattggaagagacagtagatgtgttgaaagaattttttgagatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactatgaattactccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctattcaacatttcttgcctttttggccagaaaaaccaactcgttatcgagaagtgattagtgcatattcaattgaaacaaggaagctaatcacaaagatttcagatgtgattagtgaaggattaggacttgaaaaggggtattttggaggtgaattaagcaaagttcaaatgctattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51690" stop="50068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51395" g_stop="51203" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="444" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50499" g_stop="50368" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="576" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E302664" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51395" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50499" e_stop="50368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGT</genome_strand>
        <mrna_strand>CGAGGATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG.......................................................................................................GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG.............................................................................................................................................................................................................................................................................................................................................................AGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572480" ref_strand="+" ref_description="SGN-E572480 [31639]">
      <seq>tagtgtcaagctggtgcaaaaatgttaaaactttgcctgaaagttacatattcccagaagaacaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatgaacatgaccaagctcaacaaataattaaagccagccaggattttgggtattttcaggtgatcaaccatgggatttcagaaacattattggaagagacaatagatgtgttgaaagaattttttaacatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactattaattattccaatgaagataaacattattggacagatgctttagcacatcattgtcatcctctccaacattacttgcctttttggccagaaaaaccaactcgttatcaagaagtgattagtgcgtattcaattgaaacaaggaagctaatcacaaagatttcagatgtgattagtgaaggattagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51687" stop="50121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51387" g_stop="51203" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50499" g_stop="50421" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="515" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E572480" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51387" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50499" e_stop="50421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGA</genome_strand>
        <mrna_strand>TAGTGTCAAGCTGGTGCAAAAATGTTAAAACTTTGCCTGAAAGTTACATATTCCCAGAAGAACAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATGAACATGACCAAGCTCAACAAATAATTAAAGCCAGCCAGGATTTTGGGTATTTTCAG.......................................................................................................GTGATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAATAGATGTGTTGAAAGAATTTTTTAACATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATTAATTATTCCAATGAAGATAAACATTATTGGACAGATGCTTTAGCACATCATTGTCATCCTCTCCAACATTACTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCA.............................................................................................................................................................................................................................................................................................................................................................AGAAGTGATTAGTGCGTATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306029" ref_strand="+" ref_description="SGN-E306029 [cLEY-17-P16]">
      <seq>tccaatggaaaataatttagtgtcaaactggtgcaaaaatgtacaaactttgcctgaaagttacatattcccagaagatgaaagacctggagaacctattgttcctttaagtggtagcagtccaattatagacttgactactcatcaacatgaccaagctcaacaaataattaaagccagtcaggattttggctattttcaggtaatcaaccatgggatttcagaaacattattggaagagacagtagatgtgttgaaagaattttttgagatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactatgaattactccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctattcaacatttcttgcctttttggccagaaaaaccaactcgttatcgagaagtgattagtgcatattcaattgaaacaaggaagctaatcacaaagatttcagatgtgattagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51704" stop="50132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51404" g_stop="51203" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50849" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="453" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50499" g_stop="50432" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="521" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E306029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51404" e_stop="51203"/>
          <exon e_start="51099" e_stop="50849"/>
          <exon e_start="50499" e_stop="50432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGAAAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCGGTAATTTCCTCTATCCTCTTTTTTTTTTTTTTGGTCGTGTGAAATAAAGGTCAAAGTTTATGGTCTCTTTACCTTAGATTACAGTTTAAAATTACATATTAATGTTGCCTCTTTTGGGGCTCCAACTAATCTAGATTCGTGTCAAATAAGAGCTCCAATGAATTTTATTTGCCCTATCACAACCCTTGGTGACACGAGATAACATAAACATAGGGTAATTTTAAAGCAATAGTTCAAATAGAGGGACAAATTTCACCTAGTTTTTTTTGATTGACCAATTTTATGTGACAATTAATATAGTGTAATTTTTTCCATTATACCTAATTTGTTTCCTAAAAACAAATTCCAGAGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTG</genome_strand>
        <mrna_strand>TCCAATGGAAAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG.......................................................................................................GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG.............................................................................................................................................................................................................................................................................................................................................................AGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603154" ref_strand="+" ref_description="SGN-E603154 [56236]">
      <seq>gccagccaggattttgggtattttcaggtgatcaaccatgggatttcagaaacattattggaagagacaatagatgtgttgaaagaattttttaacatgccagctaaagagaaagcaaagtactactcagttgacccaaatagcaaatgcaaactctacacaagcactattaattattccaatgaagataaacattattggagagatgctttagcacatcattgtcatcctctccaacattacttgcctttttggccagaaaaaccaactcgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51402" stop="50552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51229" g_stop="51203" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51099" g_stop="50852" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="275" r_length="248" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E603154" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51229" e_stop="51203"/>
          <exon e_start="51099" e_stop="50852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGTCAGGATTTTGGCTATTTTCAGGTTTTATAATTTCCTCTCTTCGATCTTTCTCTCGAGTTAAATTATACTGATATCGTAAATGTTACTTATATAACAACATTTAATTTGATTTTGTGAAAAACAGGTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTA</genome_strand>
        <mrna_strand>GCCAGCCAGGATTTTGGGTATTTTCAG.......................................................................................................GTGATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAATAGATGTGTTGAAAGAATTTTTTAACATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATTAATTATTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTCTCCAACATTACTTGCCTTTTTGGCCAGAAAAACCAACTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745120" ref_strand="+" ref_description="SGN-E745120 [GI|47106008]">
      <seq>gacttttgggtgaggctgttattgtgggtgcattgaaattgatggctaatcgatctctgaagcgttttctcaacaacatagaattcagtagtggtatctcaaggaaacatgtctccaaccagagatctgtctacaacattcttaaccggtgccagtcaaattattcaaacacagatggtcataagcctgaagagaagagcataagcaatggtcgagagcgcagtaaatatgatattgatgatggcgattttcatgataataagtggaaacttgagcttgattggctctctaaagctgttgaacctgcggtccaactctgcagatgggctttgtcaacaggaaatggaaatggagacaaacttccaccgaccaataaatctcttgcagagatatttgccagcattcaacgtagtaaattgggacttcaggattggagtctcactgatcttaccataggcctatatctaatatatcttcagcaagcatccaccagtcctattgaggatgttaagggtgaacagatatactctgatttgattgttcaagatctcatctaccacactgaactggctaagggttcttataaagattgcactgcagcactttcaaggaattgtatgctccgggaaagtaatgtcgtcaaattcataaaaaattccagtgtgttaaggcctggatattatataggaattgacaagcggaaaaaacttgtagttcttgggatacgtggaactcatacagtatatgatcttataactgatattgtttcttcaagtcatgaagaaatcacactcgagggttactccactcacttcggaacttctgaggctgctcgttggttccttactcatgagatgggcaccataaggaactgccttgaaaaacacaaggttaaggcttgttggtcattcccttggaggtgcaacagcttcgttgctggctatcatgcttcgaaatatgtcggcccgagaacttggttttagtcctgatattgtttctgcagttggatatgctacgccaccatgtgtttctagagaactcgccgaaagttgctctgaatatgtcacaacagtggtaatgcaggatgatataatacctaggttaagtatcgcctctctcacaaggcttaggaatgaaattcttcaaactaactgggtgagtgttcttcagaaggaagactggagaggtgtcgtagacttgtttacaaatgcaaagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaagccaaactaagcactctgagtctacagttccacgtgttcctgatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgaagctgagttgtttgtccccggaactctttatattttgaagaggaatgcaaatgcaagaaaggaaggtaacagtgtggaatgtttcacactttggaagagacactcgggggagcattttcagaggatactgctctcaaataacataatttctgcccacaagtgtgatagccattattatgcgttgagggatgttcttaaaggtttgcctggttctaccgatgaagctgttttctgatgaataaatttcacatatttgctctttttgtgtaaaacaatgatctcatcattccacggcttgtgggaggtagctagctggtccccttgagagtagttgaggtacgtgcaagctgacctttatcaaaacaaagaaataaataatggcaatgttagttgatttacaggtagaaaccattgtccttagagataaaaatagttgtaattttcagcttatacttttatgttttcctgtagtaccaggaaatcttcctgtattttcattagtacttcttttagaacatgtactgctgctatacaagcatagccaaatggacaatcaagctaattttttttgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53086" stop="81201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53385" g_stop="53465" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53466" i_stop="54285" i_length="820">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54286" g_stop="54543" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="339" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54544" i_stop="55356" i_length="813">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55357" g_stop="55556" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="539" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55557" i_stop="55669" i_length="113">
            <donor d_prob="0.648" d_score="1.00"/>
            <acceptor a_prob="0.621" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55670" g_stop="56020" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="890" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56021" i_stop="56175" i_length="155">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56176" g_stop="56368" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1083" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56561" g_stop="56631" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1154" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57868" g_stop="58007" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1155" r_stop="1294" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58169" g_stop="58816" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1295" r_stop="1940" r_length="646" r_score="0.997"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="58817" i_stop="59616" i_length="800">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="59617" g_stop="59633" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1941" r_stop="1957" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E745120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1959</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53385" e_stop="53465"/>
          <exon e_start="54286" e_stop="54543"/>
          <exon e_start="55357" e_stop="55556"/>
          <exon e_start="55670" e_stop="56020"/>
          <exon e_start="56176" e_stop="56368"/>
          <exon e_start="56561" e_stop="56631"/>
          <exon e_start="57868" e_stop="58007"/>
          <exon e_start="58169" e_stop="58816"/>
          <exon e_start="59617" e_stop="59633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTGGGTGAGGCTGTTATTGTGGGTGCATTGAAATTGATGGCTAATCGATCTCTGAAGCGTTTTCTCAACAACATAGGTCAGTTTAACTACCCCTTATGTTCCCAATTTTTGTTTTTCTTTGGGTTTCTGAAGTTTAGCTCTCTGCATTTCTTCCTCTCCAAAACCTAACATCTAATGGCAGCTGCGTCAATTTATGGGATTGAGCATGACTAGAAAAAAAAATCTTTTTTTGGTTCATTTTCTGCATTCTATGATCTTCGACAGATGAAATAGAGCTGAAGATATATAGGGTTCACATATCTGACACTAGCTACAGGTAGTGGTGTAATTATTGATTGATTACTTGTTTGGTTGATAAATCAGCTGATAAAGGTATTGGGGAAGAAAGACAGTTGGGAGTTCGTCCCAACACACTTTGCCCAGTGCAATTTACCTCTTCTGTGTGGTTTGCGACCAGATAACAACAATATACCCAGTGTAATCTCACAAAGTGGGGTTTAGGGAGGGTAGTGTGTATGTAGACCTTACTTCTACAAGGTAGAGAGGCTGTTTCGGATAGAATGGGTACCCCTGTTAACCAAAACAAAATGAATTACGGAAAAAAGATTGACATTTCTACTGTTATGCATAAGAATAAAATCCACGGTCCGAAGCAAAATTTTGATTAGATACATATCTGCCTTTTTTTTTCCATCGTTAGAAACAGAAAATTACACTTATATAGTATGTACACAGTTGAATGGGGAGGCTTGTGGGTAAGTGAAAAGGTTACAGAAGTGAAAACTAGTTAGATGTGCTGGATAAATGATCTGTTGGTATTTTATTGTTTGTTCCATTAATTTAAAATATCTAATCTTTCGAATCATTTTAAAGATAATTGTAATTGTATCTGGCAGAATTCAGTAGTGGTATCTCAAGGAAACATGTCTCCAACCAGAGATCTGTCTACAACATTCTTAACCGGTGCCAGTCAAATTATTCAAACACAGATGGTCATAAGCCTGAAGAGAAGAGCATAAGCAATGGTCGAGAGCGCAGTAAATATGATATTGATGATGGCGATTTTCATGATAATAAGTGGAAACTTGAGCTTGATTGGCTCTCTAAAGCTGTTGAACCTGCGGTCCAACTCTGCAGATGGGCTTTGTCAACAGGTTTGTGTAACCTCCACTATTACAAGGCATTGATGTTTCTCTATGATGCTCCATTCCTATAGTAGCTTCGAGAGTTTGGACCTATAGAGCAATGTCATGTTGCAAAGGGGGGACCGCCTATGTCATACATTTAGAATGAACTAGGACATACCTCAACTAGTTTGTTGCTGTGGATATTTAATATAAATCAATTTTTGCTGTGGTTTCTACTTGTTGTTTGACCTCCTTACAACTACGTATAGGATGTTTAGAATTCATCTGTCGCTTTTAACACGCTGGTTGCAATTGTATTTATCGATCTAAAACAAATGGATTCAATCAACTTGGCATGGATACTTGATTAATTGAATTCACATCTTGCTTTAAGTTCTGGAACCAGTCGGCTGACATGCAGATCCTTCTTAAAAATCATTATCACATATTGGTGTTTTGGGGGTGGGGGGTGGGGTGGGGTGATTCCAGGTCCTTAGGATCATATTGTTAATCTGAGAAAAGATTCAAAGTTCAAGATAGATTTCAAGTAATTGGTTTAATCTGTACTCTAGTTCAAGTTCGATCTCTAGTTTTGGAGGGATGCTTTTGCGTCTTACCAAAACTAGCTCCAGTTGTGAAGGCTGATTTAACGAAAAGTAATTCCAGGTCCTTAGGATCATATTTGATAATCTGCAAAATGATTTAAAAAGTGCAGGATAGATTTTAAGTAATTGGTTTGATCTGTACTGTAGTTCAAATTCGATCTCAAGTTTAGGAGGAATGCTTTTGCGTCTTACCAAAACTATTACCAGTTGTGAAGGCTGAATCAATTCTTTGCAGGAAATGGAAATGGAGACAAACTTCCACCGACCAATAAATCTCTTGCAGAGATATTTGCCAGCATTCAACGTAGTAAATTGGGACTTCAGGATTGGAGTCTCACTGATCTTACCATAGGCCTATATCTAATATATCTTCAGCAAGCATCCACCAGTCCTATTGAGGATGTTAAGGGTGAACAGATATACTCTGATTTGATTGTAAATACTAGAACCTTATTAAGCGTTTGGATTCTGAATAAGCCTGCCTTCTCAAAGTTTAACTCTTTCGTATTGCTATTCGTGACTCTAACAAGATAAGCTTTTCTGATTAGGTTCAAGATCTCATCTACCACACTGAACTGGCTAAGGGTTCTTATAAAGATTGCACTGCAGCACTTTCAAGGAATTGTATGCTCCGGGAAAGTAATGTCGTCAAATTCATAAAAAATTCCAGTGTGTTAAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAGGTGGACATCTTTTCATTCGCAATTTGTTTTCTTCACTCTGACTCACCAAGGAGGAAAGAAAAACAAGAAATAAAAATCATGGAGTAGTTTTCATGTGTATGTAAACCACTTTTATATCTCCATTCAGCACGACTAATTCATCCACAGGGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAGGTCAGTAACTAATCCATACAGACCCTTTTTTTTCTTTTTTTTTCCTTCTCAAGATATTTTAATAATGAATCAACAGCAGAGTACTTTCCTCAGATTTTTGTTTTTATCAACTTTTGCTATGTTTTCCAACTAGGTTCTTATTGAAGTGCATATTGATTGACTGCTGGAATTCCACTGTGTTTTGTGGTGCAGGATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTGGTAAGCAAATGTAATGTTAAGAGTGGTCCTTGGTTCTTTCTCAATTATTGTGCTGGTGTTGCATTAAACCTGATATCTGTGGCCCTAGATTGCATATAAATGTACTTGCATATCATGCAATTAATAGGTTATATTTCAGTAACTCATTCCTGCTGCTATTTCTTCTCTCTTTCCTTTCAGCATTTATAATTCTAAAAGTTCTAGAACCAACTACTTCTTGCTAGTTGCTATAGTATATGGAAGTCAGAATGACTTTGACTTAAGTATGAACTTCGAGAAACAATTGATGGGGTCTGCAAAATGGTGTTTTGCCTTTTTCCCACCCCTTACAACTCCTTTCTTAGCTTACATAAGGATCTCTAGTTTCCGGATAACCTTAGTCTTCTTTGCAACACCAGCAATTTACTCTCTTGTTCGTTGTAATTTGTCCAGAATTTTTCATGAAAACTGCGATGCAGTAGCTTTTGTTCTCTTTCCTTCTAGTGCTTTGAGGGGTGGATAGTGTGTGTGTTGTGTCAAGTAGTTCAGTGCGTTACATGATGTTAATTGTGAATTATTATTAACCTTACCTTTTAGAAGTTCAAATTGGCACAACTGTCCCATTGTCCATTGATTCTGATATTGCTTCTGCAGTGAATTCTAGCAGCCTAAGTCAATAGGACATGAGGTGGCAGATCTTGGTTGGGGAAGGAAGTGAAGGAGGCTAGGAAATGGAATGAAGAAGCAATAGTGATTTAGTCATCTGAAGTTATAGTTAATGGTATAAGTTTGTGAGATGTAGCTTGCTTGGTTTCGAAATTCACATGTGATGTTACCGGCCAATACCGGAAGTTCTTAAAACCATAGCGAGGTAACATGAACCTTATTTATTATTATAAGCTAGAGAGAGAATGAGAATGAGAATGCTTTGCTACAAAGAGTAGAAAGAAATCAAGGCACAAGGAAGGGCGTAGTAATCGACGAAATGCTCTGGGGAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAAGTTCTGTTTCTTCTTTCTCTTTTCCTCTTTGTTGGGTTTTATCTTGTACCACCTGTAGGATTTTTGGGGGTCAAAAGTTCACATAGATTAAAAATAAGCATTTTGATGTACGTAACTGAAGAGATATGGAAGGAAAAGTATAAAAATGGATAAACTATTGCAGGGAGATCATATTCACTAACATTTTGTTTTCTTCTTTATCTTGTCTAGGGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGATGTTTCCTTTCTTATATTTGAAACTGATTGTATTTCTTGTACTGCTATGGATAATGTTAAGATTCAAGTTTAATACTTCTGTTGTATATTTTTCAATTTTATATATTTGTCTAGTGTTTGCAATAGCTACGAAATTTTACACTAGTTTGATATTTGTTCATTATCTTTAGATTCACGGAATATTTCAATATTATTATCTTTATTCCACTAATCAAATGATGCTATGATACCATGATTTCTTGAACATAGAATATTAAGGTTACTTTTTCTGTGTTGTACTGCAAGAGTGGAAGACCAACTAGATGATAAAGTGATGATGTCCTTTATTCTCTTCTAAACTAGTCTGCTAATAGACAAATTTGTCTCCCTGTTTTAATTCACTTTCATCAAAGTGCACTTTTGTATCCCTCTATTTTTTTATTCTTTTTTTTGTTCTTTATTCTTGGTCATTATTGCAACTTTTAGCAAGACCTTTGCCTTTTTAAACTTCAAATTTAATCAACATCATGTACTTAAATGTCGTTTTAGTTTAAGAAATTGTTTTAAAATAATTTCCATTTTAGAAATTTAAAATTAAAGTTGACAACTGTTAACATTAATAAATATGAACAATGTATAAGAGGAAAAATTAATCTACCTTTATCAAACAGTGTACTTTTTATTATTGTTAATGAAAGTGAAAAAAAGCTAAAACGACAATTAAGATGATTTTATTTGATGGTGTGTATAGTACTTGTACTTTTAGAAATCCGTCTTTATCATCTCTAAACTTGTTTAAGAAACTTAATTTGTGTTTTGTAGGAAAAGCAAAAACTTAA</genome_strand>
        <mrna_strand>GACTTTTGGGTGAGGCTGTTATTGTGGGTGCATTGAAATTGATGGCTAATCGATCTCTGAAGCGTTTTCTCAACAACATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGTAGTGGTATCTCAAGGAAACATGTCTCCAACCAGAGATCTGTCTACAACATTCTTAACCGGTGCCAGTCAAATTATTCAAACACAGATGGTCATAAGCCTGAAGAGAAGAGCATAAGCAATGGTCGAGAGCGCAGTAAATATGATATTGATGATGGCGATTTTCATGATAATAAGTGGAAACTTGAGCTTGATTGGCTCTCTAAAGCTGTTGAACCTGCGGTCCAACTCTGCAGATGGGCTTTGTCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGAAATGGAGACAAACTTCCACCGACCAATAAATCTCTTGCAGAGATATTTGCCAGCATTCAACGTAGTAAATTGGGACTTCAGGATTGGAGTCTCACTGATCTTACCATAGGCCTATATCTAATATATCTTCAGCAAGCATCCACCAGTCCTATTGAGGATGTTAAGGGTGAACAGATATACTCTGATTTGATT.................................................................................................................GTTCAAGATCTCATCTACCACACTGAACTGGCTAAGGGTTCTTATAAAGATTGCACTGCAGCACTTTCAAGGAATTGTATGCTCCGGGAAAGTAATGTCGTCAAATTCATAAAAAATTCCAGTGTGTTAAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAG...........................................................................................................................................................GTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG................................................................................................................................................................................................GATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTT--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279230" ref_strand="-" ref_description="SGN-E279230 [cLEL-4-I21](-)">
      <seq>gcacgagattgaaattgatggttaatcgatctctgaagcgttttctgaacaacatagaattcagtagtggtatctcaaggaaacatgtctccaaccagagatctgtctacaacattcttaaccggtgccagtcaaattattcaaacacagatggtcataagcctgaagagaagagcataagcaatggtcgagagcgcagtaaatatgatattgatgatggcgattttcatgataataagtggaaacttgagcttgattggctctctaaagctgttgaacctgcggtccaactctgcagatgggctttgtcaacaggaaatggaaatggagacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53112" stop="55677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53408" g_stop="53465" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53466" i_stop="54285" i_length="820">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54286" g_stop="54543" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="315" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54544" i_stop="55356" i_length="813">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55357" g_stop="55377" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="336" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E279230" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279230" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53408" e_stop="53465"/>
          <exon e_start="54286" e_stop="54543"/>
          <exon e_start="55357" e_stop="55377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGTGCATTGAAATTGATGGCTAATCGATCTCTGAAGCGTTTTCTCAACAACATAGGTCAGTTTAACTACCCCTTATGTTCCCAATTTTTGTTTTTCTTTGGGTTTCTGAAGTTTAGCTCTCTGCATTTCTTCCTCTCCAAAACCTAACATCTAATGGCAGCTGCGTCAATTTATGGGATTGAGCATGACTAGAAAAAAAAATCTTTTTTTGGTTCATTTTCTGCATTCTATGATCTTCGACAGATGAAATAGAGCTGAAGATATATAGGGTTCACATATCTGACACTAGCTACAGGTAGTGGTGTAATTATTGATTGATTACTTGTTTGGTTGATAAATCAGCTGATAAAGGTATTGGGGAAGAAAGACAGTTGGGAGTTCGTCCCAACACACTTTGCCCAGTGCAATTTACCTCTTCTGTGTGGTTTGCGACCAGATAACAACAATATACCCAGTGTAATCTCACAAAGTGGGGTTTAGGGAGGGTAGTGTGTATGTAGACCTTACTTCTACAAGGTAGAGAGGCTGTTTCGGATAGAATGGGTACCCCTGTTAACCAAAACAAAATGAATTACGGAAAAAAGATTGACATTTCTACTGTTATGCATAAGAATAAAATCCACGGTCCGAAGCAAAATTTTGATTAGATACATATCTGCCTTTTTTTTTCCATCGTTAGAAACAGAAAATTACACTTATATAGTATGTACACAGTTGAATGGGGAGGCTTGTGGGTAAGTGAAAAGGTTACAGAAGTGAAAACTAGTTAGATGTGCTGGATAAATGATCTGTTGGTATTTTATTGTTTGTTCCATTAATTTAAAATATCTAATCTTTCGAATCATTTTAAAGATAATTGTAATTGTATCTGGCAGAATTCAGTAGTGGTATCTCAAGGAAACATGTCTCCAACCAGAGATCTGTCTACAACATTCTTAACCGGTGCCAGTCAAATTATTCAAACACAGATGGTCATAAGCCTGAAGAGAAGAGCATAAGCAATGGTCGAGAGCGCAGTAAATATGATATTGATGATGGCGATTTTCATGATAATAAGTGGAAACTTGAGCTTGATTGGCTCTCTAAAGCTGTTGAACCTGCGGTCCAACTCTGCAGATGGGCTTTGTCAACAGGTTTGTGTAACCTCCACTATTACAAGGCATTGATGTTTCTCTATGATGCTCCATTCCTATAGTAGCTTCGAGAGTTTGGACCTATAGAGCAATGTCATGTTGCAAAGGGGGGACCGCCTATGTCATACATTTAGAATGAACTAGGACATACCTCAACTAGTTTGTTGCTGTGGATATTTAATATAAATCAATTTTTGCTGTGGTTTCTACTTGTTGTTTGACCTCCTTACAACTACGTATAGGATGTTTAGAATTCATCTGTCGCTTTTAACACGCTGGTTGCAATTGTATTTATCGATCTAAAACAAATGGATTCAATCAACTTGGCATGGATACTTGATTAATTGAATTCACATCTTGCTTTAAGTTCTGGAACCAGTCGGCTGACATGCAGATCCTTCTTAAAAATCATTATCACATATTGGTGTTTTGGGGGTGGGGGGTGGGGTGGGGTGATTCCAGGTCCTTAGGATCATATTGTTAATCTGAGAAAAGATTCAAAGTTCAAGATAGATTTCAAGTAATTGGTTTAATCTGTACTCTAGTTCAAGTTCGATCTCTAGTTTTGGAGGGATGCTTTTGCGTCTTACCAAAACTAGCTCCAGTTGTGAAGGCTGATTTAACGAAAAGTAATTCCAGGTCCTTAGGATCATATTTGATAATCTGCAAAATGATTTAAAAAGTGCAGGATAGATTTTAAGTAATTGGTTTGATCTGTACTGTAGTTCAAATTCGATCTCAAGTTTAGGAGGAATGCTTTTGCGTCTTACCAAAACTATTACCAGTTGTGAAGGCTGAATCAATTCTTTGCAGGAAATGGAAATGGAGACAAAC</genome_strand>
        <mrna_strand>GCACGAG-ATTGAAATTGATGGTTAATCGATCTCTGAAGCGTTTTCTGAACAACATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGTAGTGGTATCTCAAGGAAACATGTCTCCAACCAGAGATCTGTCTACAACATTCTTAACCGGTGCCAGTCAAATTATTCAAACACAGATGGTCATAAGCCTGAAGAGAAGAGCATAAGCAATGGTCGAGAGCGCAGTAAATATGATATTGATGATGGCGATTTTCATGATAATAAGTGGAAACTTGAGCTTGATTGGCTCTCTAAAGCTGTTGAACCTGCGGTCCAACTCTGCAGATGGGCTTTGTCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGAAATGGAGACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595294" ref_strand="+" ref_description="SGN-E595294 [38564]">
      <seq>agattgcactgcagcactggcaaggaattgtatgctccgggaaagtaatgttatcaaattcataaaaaattccagtgtgttgaggcctggatattatataggaattgacaagcggaaaaaacttgtaattcttggaatacgtggaactcatacagtatatgatcttataactgacatcgtttcttcaagtcatgaagaaatcacgctcgagggttactccactcacttcggaacttctgaggctgctcgttggttcctttttcatgagatgggcaccataaggaactgccttgagaaacacaagggatttaggttaaggcttgttggtcattcccttggaggtgcaacagcttcattgctggctatcatgcttcgaaatatgtcggcccgagaacttggtttcagtcctgatattgtgtcagcagttggatatgctacgccgccatgtgtttctagagaacttgccgaaagttgctctgaatatgtcacaacagtggtaatgcaggatgatataattccaaggttaagtattgcctccctcacgaggcttaggaatgaaattcttcaaaccaactgggtgagtgttcttcaaaaggaagactggagaggtgtcgtagacttatttaccaatgcaaagcaggttgtatcttactgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55417" stop="58248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55717" g_stop="56020" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56021" i_stop="56167" i_length="147">
            <donor d_prob="0.760" d_score="0.94"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56168" g_stop="56368" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="505" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56561" g_stop="56631" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="576" r_length="71" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57868" g_stop="57948" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="658" r_length="82" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E595294" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55717" e_stop="56020"/>
          <exon e_start="56168" e_stop="56368"/>
          <exon e_start="56561" e_stop="56631"/>
          <exon e_start="57868" e_stop="57948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGCACTGCAGCACTTTCAAGGAATTGTATGCTCCGGGAAAGTAATGTCGTCAAATTCATAAAAAATTCCAGTGTGTTAAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAGGTGGACATCTTTTCATTCGCAATTTGTTTTCTTCACTCTGACTCACCAAGGAGGAAAGAAAAACAAGAAATAAAAATCATGGAGTAGTTTTCATGTGTATGTAAACCACTTTTATATCTCCATTCAGCACGACTAATTCATCCACAGGGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAGGTCAGTAACTAATCCATACAGACCCTTTTTTTTCTTTTTTTTTCCTTCTCAAGATATTTTAATAATGAATCAACAGCAGAGTACTTTCCTCAGATTTTTGTTTTTATCAACTTTTGCTATGTTTTCCAACTAGGTTCTTATTGAAGTGCATATTGATTGACTGCTGGAATTCCACTGTGTTTTGTGGTGCAGGATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTGGTAAGCAAATGTAATGTTAAGAGTGGTCCTTGGTTCTTTCTCAATTATTGTGCTGGTGTTGCATTAAACCTGATATCTGTGGCCCTAGATTGCATATAAATGTACTTGCATATCATGCAATTAATAGGTTATATTTCAGTAACTCATTCCTGCTGCTATTTCTTCTCTCTTTCCTTTCAGCATTTATAATTCTAAAAGTTCTAGAACCAACTACTTCTTGCTAGTTGCTATAGTATATGGAAGTCAGAATGACTTTGACTTAAGTATGAACTTCGAGAAACAATTGATGGGGTCTGCAAAATGGTGTTTTGCCTTTTTCCCACCCCTTACAACTCCTTTCTTAGCTTACATAAGGATCTCTAGTTTCCGGATAACCTTAGTCTTCTTTGCAACACCAGCAATTTACTCTCTTGTTCGTTGTAATTTGTCCAGAATTTTTCATGAAAACTGCGATGCAGTAGCTTTTGTTCTCTTTCCTTCTAGTGCTTTGAGGGGTGGATAGTGTGTGTGTTGTGTCAAGTAGTTCAGTGCGTTACATGATGTTAATTGTGAATTATTATTAACCTTACCTTTTAGAAGTTCAAATTGGCACAACTGTCCCATTGTCCATTGATTCTGATATTGCTTCTGCAGTGAATTCTAGCAGCCTAAGTCAATAGGACATGAGGTGGCAGATCTTGGTTGGGGAAGGAAGTGAAGGAGGCTAGGAAATGGAATGAAGAAGCAATAGTGATTTAGTCATCTGAAGTTATAGTTAATGGTATAAGTTTGTGAGATGTAGCTTGCTTGGTTTCGAAATTCACATGTGATGTTACCGGCCAATACCGGAAGTTCTTAAAACCATAGCGAGGTAACATGAACCTTATTTATTATTATAAGCTAGAGAGAGAATGAGAATGAGAATGCTTTGCTACAAAGAGTAGAAAGAAATCAAGGCACAAGGAAGGGCGTAGTAATCGACGAAATGCTCTGGGGAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAAGTTCTGTTTCTTCTTTCTCTTTTCCTCTTTGTTGGGTTTTATCTTGTACCACCTGTAGGATTTTTGGGGGTCAAAAGTTCACATAGATTAAAAATAAGCATTTTGATGTACGTAACTGAAGAGATATGGAAGGAAAAGTATAAAAATGGATAAACTATTGCAGGGAGATCATATTCACTAACATTTTGTTTTCTTCTTTATCTTGTCTAGGGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTT-CTGTGCA</genome_strand>
        <mrna_strand>AGATTGCACTGCAGCACTGGCAAGGAATTGTATGCTCCGGGAAAGTAATGTTATCAAATTCATAAAAAATTCCAGTGTGTTGAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAATTCTTGGAATACGTGGAACTCATACAGTATATGATCTTATAACTGACATCGTTTCTTCAAGTCATGAAGAAATCACGCTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTTTTCATGAGATGGGCACCATAAGGAACTGCCTTGAGAAACACAAG...................................................................................................................................................GGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCATTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTCAGTCCTGATATTGTGTCAGCAGTTGGATATGCTACGCCGCCATGTGTTTCTAGAGAACTTGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG................................................................................................................................................................................................GATGATATAATTCCAAGGTTAAGTATTGCCTCCCTCACGAGGCTTAGGAATGAAATTCTTCAAACCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTGTTCTTCAAAAGGAAGACTGGAGAGGTGTCGTAGACTTATTTACCAATGCAAAGCAGGTTGTATCTTACTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487510" ref_strand="+" ref_description="SGN-E487510 [cSTE-25-D18]">
      <seq>taggaattgacaagcggaaaaaacttgtaattcttggaatacgtggaactcatacagtgtatgatcttataactgacatcgtttcttcaagtcatgaagaaataacgctcgagggttactccactcacttcggaacttctgaggctgcccgttggttccttattcatgagatgggcaccataaggaactgtcttgagaaacacaaggttaaggcttgttggtcattcccttggaggtgcaacagcttcattgctggctatcatgcttcgaaatatgtcggcccgagaacttggtttcagtcctgatattgtgtcagcagttggatatgctacgccaccatgtgtttctagaaaacttgctgaaagttgctctgaatatgtcacaacagtggtaatgcaggatgatattattccaaggttaagtattgcttccctcacgaggcttaggaatgaaattcttcaaactaactgggtgagtgttcttcagaaggaagactggagaggtgtcgtagacttatttaccaatgcaaagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaggccaaactaagcactctgagtctacggttccacgtgttcctaatacctccaactccaaagtcaatacatcatctcttgtgagacangaaggcgatgctgagttgtttgtccccggaactctttatattttgaagaggaatgcaaatgcaagaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55515" stop="58605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55815" g_stop="56020" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56021" i_stop="56175" i_length="155">
            <donor d_prob="0.760" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56176" g_stop="56368" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="399" r_length="193" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56561" g_stop="56631" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="470" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57868" g_stop="58007" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="610" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58169" g_stop="58305" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="747" r_length="137" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E487510" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55815" e_stop="56020"/>
          <exon e_start="56176" e_stop="56368"/>
          <exon e_start="56561" e_stop="56631"/>
          <exon e_start="57868" e_stop="58007"/>
          <exon e_start="58169" e_stop="58305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAGGTGGACATCTTTTCATTCGCAATTTGTTTTCTTCACTCTGACTCACCAAGGAGGAAAGAAAAACAAGAAATAAAAATCATGGAGTAGTTTTCATGTGTATGTAAACCACTTTTATATCTCCATTCAGCACGACTAATTCATCCACAGGGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAGGTCAGTAACTAATCCATACAGACCCTTTTTTTTCTTTTTTTTTCCTTCTCAAGATATTTTAATAATGAATCAACAGCAGAGTACTTTCCTCAGATTTTTGTTTTTATCAACTTTTGCTATGTTTTCCAACTAGGTTCTTATTGAAGTGCATATTGATTGACTGCTGGAATTCCACTGTGTTTTGTGGTGCAGGATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTGGTAAGCAAATGTAATGTTAAGAGTGGTCCTTGGTTCTTTCTCAATTATTGTGCTGGTGTTGCATTAAACCTGATATCTGTGGCCCTAGATTGCATATAAATGTACTTGCATATCATGCAATTAATAGGTTATATTTCAGTAACTCATTCCTGCTGCTATTTCTTCTCTCTTTCCTTTCAGCATTTATAATTCTAAAAGTTCTAGAACCAACTACTTCTTGCTAGTTGCTATAGTATATGGAAGTCAGAATGACTTTGACTTAAGTATGAACTTCGAGAAACAATTGATGGGGTCTGCAAAATGGTGTTTTGCCTTTTTCCCACCCCTTACAACTCCTTTCTTAGCTTACATAAGGATCTCTAGTTTCCGGATAACCTTAGTCTTCTTTGCAACACCAGCAATTTACTCTCTTGTTCGTTGTAATTTGTCCAGAATTTTTCATGAAAACTGCGATGCAGTAGCTTTTGTTCTCTTTCCTTCTAGTGCTTTGAGGGGTGGATAGTGTGTGTGTTGTGTCAAGTAGTTCAGTGCGTTACATGATGTTAATTGTGAATTATTATTAACCTTACCTTTTAGAAGTTCAAATTGGCACAACTGTCCCATTGTCCATTGATTCTGATATTGCTTCTGCAGTGAATTCTAGCAGCCTAAGTCAATAGGACATGAGGTGGCAGATCTTGGTTGGGGAAGGAAGTGAAGGAGGCTAGGAAATGGAATGAAGAAGCAATAGTGATTTAGTCATCTGAAGTTATAGTTAATGGTATAAGTTTGTGAGATGTAGCTTGCTTGGTTTCGAAATTCACATGTGATGTTACCGGCCAATACCGGAAGTTCTTAAAACCATAGCGAGGTAACATGAACCTTATTTATTATTATAAGCTAGAGAGAGAATGAGAATGAGAATGCTTTGCTACAAAGAGTAGAAAGAAATCAAGGCACAAGGAAGGGCGTAGTAATCGACGAAATGCTCTGGGGAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAAGTTCTGTTTCTTCTTTCTCTTTTCCTCTTTGTTGGGTTTTATCTTGTACCACCTGTAGGATTTTTGGGGGTCAAAAGTTCACATAGATTAAAAATAAGCATTTTGATGTACGTAACTGAAGAGATATGGAAGGAAAAGTATAAAAATGGATAAACTATTGCAGGGAGATCATATTCACTAACATTTTGTTTTCTTCTTTATCTTGTCTAGGGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAG</genome_strand>
        <mrna_strand>TAGGAATTGACAAGCGGAAAAAACTTGTAATTCTTGGAATACGTGGAACTCATACAGTGTATGATCTTATAACTGACATCGTTTCTTCAAGTCATGAAGAAATAACGCTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCCCGTTGGTTCCTTATTCATGAGATGGGCACCATAAGGAACTGTCTTGAGAAACACAAG...........................................................................................................................................................GTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCATTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTCAGTCCTGATATTGTGTCAGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAAAACTTGCTGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG................................................................................................................................................................................................GATGATATTATTCCAAGGTTAAGTATTGCTTCCCTCACGAGGCTTAGGAATGAAATTCTTCAAACTAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTATTTACCAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAGGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACGGTTCCACGTGTTCCTAATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACANGAAGGCGATGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487516" ref_strand="+" ref_description="SGN-E487516 [cSTE-25-F10]">
      <seq>taggaattgacaagcggaaaaaacttgtaattcttggaatacgtggaactcatacagtgtatgatcttataactgacatcgtttcttcaagtcatgaagaaataacgctcgagggttactccactcacttcggaacttctgaggctgcccgttggttccttattcatgagatgggcaccataaggaactgtcttgagaaacacaaggttaaggcttgttggtcattcccttggaggtgcaacagcttcattgctggctatcatgcttcgaaatatgtcggcccgagaacttggtttcagtcctgatattgtgtcagcagttggatatgctacgccaccatgtgtttctagaaaacttgctgaaagttgctctgaatatgtcacaacagtggtaatgcaggatgatattattccaaggttaagtattgcttccctcacgaggcttaggaatgaaattcttcaaactaactgggtgagtgttcttcagaaggaagactggagaggtgtcgtagacttatttaccaatgcaaagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaggccaaactaagcactctgagtctacggttccacgtgttcctaatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgatgctgagttgtttgtccccggaactctttatattttgaagaaggaatgcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55515" stop="58599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55815" g_stop="56020" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56021" i_stop="56175" i_length="155">
            <donor d_prob="0.760" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56176" g_stop="56368" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="399" r_length="193" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56561" g_stop="56631" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="470" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57868" g_stop="58007" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="610" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58169" g_stop="58299" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="741" r_length="131" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E487516" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55815" e_stop="56020"/>
          <exon e_start="56176" e_stop="56368"/>
          <exon e_start="56561" e_stop="56631"/>
          <exon e_start="57868" e_stop="58007"/>
          <exon e_start="58169" e_stop="58299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAGGTGGACATCTTTTCATTCGCAATTTGTTTTCTTCACTCTGACTCACCAAGGAGGAAAGAAAAACAAGAAATAAAAATCATGGAGTAGTTTTCATGTGTATGTAAACCACTTTTATATCTCCATTCAGCACGACTAATTCATCCACAGGGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAGGTCAGTAACTAATCCATACAGACCCTTTTTTTTCTTTTTTTTTCCTTCTCAAGATATTTTAATAATGAATCAACAGCAGAGTACTTTCCTCAGATTTTTGTTTTTATCAACTTTTGCTATGTTTTCCAACTAGGTTCTTATTGAAGTGCATATTGATTGACTGCTGGAATTCCACTGTGTTTTGTGGTGCAGGATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTGGTAAGCAAATGTAATGTTAAGAGTGGTCCTTGGTTCTTTCTCAATTATTGTGCTGGTGTTGCATTAAACCTGATATCTGTGGCCCTAGATTGCATATAAATGTACTTGCATATCATGCAATTAATAGGTTATATTTCAGTAACTCATTCCTGCTGCTATTTCTTCTCTCTTTCCTTTCAGCATTTATAATTCTAAAAGTTCTAGAACCAACTACTTCTTGCTAGTTGCTATAGTATATGGAAGTCAGAATGACTTTGACTTAAGTATGAACTTCGAGAAACAATTGATGGGGTCTGCAAAATGGTGTTTTGCCTTTTTCCCACCCCTTACAACTCCTTTCTTAGCTTACATAAGGATCTCTAGTTTCCGGATAACCTTAGTCTTCTTTGCAACACCAGCAATTTACTCTCTTGTTCGTTGTAATTTGTCCAGAATTTTTCATGAAAACTGCGATGCAGTAGCTTTTGTTCTCTTTCCTTCTAGTGCTTTGAGGGGTGGATAGTGTGTGTGTTGTGTCAAGTAGTTCAGTGCGTTACATGATGTTAATTGTGAATTATTATTAACCTTACCTTTTAGAAGTTCAAATTGGCACAACTGTCCCATTGTCCATTGATTCTGATATTGCTTCTGCAGTGAATTCTAGCAGCCTAAGTCAATAGGACATGAGGTGGCAGATCTTGGTTGGGGAAGGAAGTGAAGGAGGCTAGGAAATGGAATGAAGAAGCAATAGTGATTTAGTCATCTGAAGTTATAGTTAATGGTATAAGTTTGTGAGATGTAGCTTGCTTGGTTTCGAAATTCACATGTGATGTTACCGGCCAATACCGGAAGTTCTTAAAACCATAGCGAGGTAACATGAACCTTATTTATTATTATAAGCTAGAGAGAGAATGAGAATGAGAATGCTTTGCTACAAAGAGTAGAAAGAAATCAAGGCACAAGGAAGGGCGTAGTAATCGACGAAATGCTCTGGGGAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAAGTTCTGTTTCTTCTTTCTCTTTTCCTCTTTGTTGGGTTTTATCTTGTACCACCTGTAGGATTTTTGGGGGTCAAAAGTTCACATAGATTAAAAATAAGCATTTTGATGTACGTAACTGAAGAGATATGGAAGGAAAAGTATAAAAATGGATAAACTATTGCAGGGAGATCATATTCACTAACATTTTGTTTTCTTCTTTATCTTGTCTAGGGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAG-AGGAATGCAAATGCA</genome_strand>
        <mrna_strand>TAGGAATTGACAAGCGGAAAAAACTTGTAATTCTTGGAATACGTGGAACTCATACAGTGTATGATCTTATAACTGACATCGTTTCTTCAAGTCATGAAGAAATAACGCTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCCCGTTGGTTCCTTATTCATGAGATGGGCACCATAAGGAACTGTCTTGAGAAACACAAG...........................................................................................................................................................GTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCATTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTCAGTCCTGATATTGTGTCAGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAAAACTTGCTGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG................................................................................................................................................................................................GATGATATTATTCCAAGGTTAAGTATTGCTTCCCTCACGAGGCTTAGGAATGAAATTCTTCAAACTAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTATTTACCAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAGGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACGGTTCCACGTGTTCCTAATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGATGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAAGGAATGC-AATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704548" ref_strand="+" ref_description="SGN-E704548 [FA24CD07]">
      <seq>cagcttcgttgctggctatcatgcttcgaaatatgtcggcccgagaacttggttttagtcctgatattgtttctgcagttggatatgctacgccaccatgtgtttctagagaactcgccgaaagttgctctgaatatgtcacaacagtggtaatgcaggatgatataatacctaggttaagtatcgcctctctcacaaggcttaggaatgaaattcttcaaactaactgggtgagtgttcttcagaaggaagactggagaggtgtcgtagacttgtttacaaatgcaaagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaagccaaactaagcactctgacatccttacttcaatattttcaacatactcagatgttaacgttacctgtacagagtctacagttccacgtgttcctgatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgaagctgagttgtttgtccccggaactctttatattttgaagaggaatgcaaatgcaagaaaggaaggtaacagtgtggaatgtttcacactttggaagagacactcgggggagcattttcagaggatactgctctcaaataacataatttctgcccacaagtgtgatagccattattatgcgttgagggatgttcttanaggtttgcctggttctaccgatgaagctgttttctgatgaataaatttcacatatttgctctttttgtgtaaaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55911" stop="58821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56211" g_stop="56368" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56561" g_stop="56631" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="229" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57868" g_stop="58007" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="369" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58008" i_stop="58114" i_length="107">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58115" g_stop="58521" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="776" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E704548" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56211" e_stop="56368"/>
          <exon e_start="56561" e_stop="56631"/>
          <exon e_start="57868" e_stop="58007"/>
          <exon e_start="58115" e_stop="58521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAGGTCAGTAACTAATCCATACAGACCCTTTTTTTTCTTTTTTTTTCCTTCTCAAGATATTTTAATAATGAATCAACAGCAGAGTACTTTCCTCAGATTTTTGTTTTTATCAACTTTTGCTATGTTTTCCAACTAGGTTCTTATTGAAGTGCATATTGATTGACTGCTGGAATTCCACTGTGTTTTGTGGTGCAGGATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTGGTAAGCAAATGTAATGTTAAGAGTGGTCCTTGGTTCTTTCTCAATTATTGTGCTGGTGTTGCATTAAACCTGATATCTGTGGCCCTAGATTGCATATAAATGTACTTGCATATCATGCAATTAATAGGTTATATTTCAGTAACTCATTCCTGCTGCTATTTCTTCTCTCTTTCCTTTCAGCATTTATAATTCTAAAAGTTCTAGAACCAACTACTTCTTGCTAGTTGCTATAGTATATGGAAGTCAGAATGACTTTGACTTAAGTATGAACTTCGAGAAACAATTGATGGGGTCTGCAAAATGGTGTTTTGCCTTTTTCCCACCCCTTACAACTCCTTTCTTAGCTTACATAAGGATCTCTAGTTTCCGGATAACCTTAGTCTTCTTTGCAACACCAGCAATTTACTCTCTTGTTCGTTGTAATTTGTCCAGAATTTTTCATGAAAACTGCGATGCAGTAGCTTTTGTTCTCTTTCCTTCTAGTGCTTTGAGGGGTGGATAGTGTGTGTGTTGTGTCAAGTAGTTCAGTGCGTTACATGATGTTAATTGTGAATTATTATTAACCTTACCTTTTAGAAGTTCAAATTGGCACAACTGTCCCATTGTCCATTGATTCTGATATTGCTTCTGCAGTGAATTCTAGCAGCCTAAGTCAATAGGACATGAGGTGGCAGATCTTGGTTGGGGAAGGAAGTGAAGGAGGCTAGGAAATGGAATGAAGAAGCAATAGTGATTTAGTCATCTGAAGTTATAGTTAATGGTATAAGTTTGTGAGATGTAGCTTGCTTGGTTTCGAAATTCACATGTGATGTTACCGGCCAATACCGGAAGTTCTTAAAACCATAGCGAGGTAACATGAACCTTATTTATTATTATAAGCTAGAGAGAGAATGAGAATGAGAATGCTTTGCTACAAAGAGTAGAAAGAAATCAAGGCACAAGGAAGGGCGTAGTAATCGACGAAATGCTCTGGGGAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAAGTTCTGTTTCTTCTTTCTCTTTTCCTCTTTGTTGGGTTTTATCTTGTACCACCTGTAGGATTTTTGGGGGTCAAAAGTTCACATAGATTAAAAATAAGCATTTTGATGTACGTAACTGAAGAGATATGGAAGGAAAAGTATAAAAATGGATAAACTATTGCAGGGAGATCATATTCACTAACATTTTGTTTTCTTCTTTATCTTGTCTAGGGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATG</genome_strand>
        <mrna_strand>CAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG................................................................................................................................................................................................GATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG...........................................................................................................ACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTANAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341121" ref_strand="+" ref_description="SGN-E341121 [cTOE-22-F13]">
      <seq>gaaagtgcagagagactttaagacctagctttgccgtgtgttgaaatgacaaggtgagtgttcttcagaaggaagactggagaggtgtcgtagacttgtttacaaatgcaaagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaagccaaactaagcactctgagtctacagttccacgtgttcctgatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgaagctgagttgtttgtccccggaactctttatattttgaagaggaatgcaaatgcaagaaaggaaggtaacagtgtggaatgtttcacactttggaagagacactcgggggagcattttcagaggatactgctctcaaataacataatttctgcccacaagtgtgatagccattattatgcgttgagggatgttcttaaaggtttgcctggttctaccgatgaagctgttttctgatgaataaatttcacatatttgctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57306" stop="58807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57606" g_stop="57657" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57658" i_stop="57867" i_length="210">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57868" g_stop="58007" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="192" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58169" g_stop="58507" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="531" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E341121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57606" e_stop="57657"/>
          <exon e_start="57868" e_stop="58007"/>
          <exon e_start="58169" e_stop="58507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAAGTTCTGTTTCTTCTTTCTCTTTTCCTCTTTGTTGGGTTTTATCTTGTACCACCTGTAGGATTTTTGGGGGTCAAAAGTTCACATAGATTAAAAATAAGCATTTTGATGTACGTAACTGAAGAGATATGGAAGGAAAAGTATAAAAATGGATAAACTATTGCAGGGAGATCATATTCACTAACATTTTGTTTTCTTCTTTATCTTGTCTAGGGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTT</genome_strand>
        <mrna_strand>GAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAA..................................................................................................................................................................................................................GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373485" ref_strand="+" ref_description="SGN-E373485 [TUS-31-B20]">
      <seq>tcagaaggaagactggagaggtgtcgtagacttgtttacaaatgcaaagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaagccaaactaagcactctgagtctacagttccacgtgttcctgatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgaagctgagttgtttgtccccggaactctttatattttgaagaggaatgcaaatgcaagaaaggaaggtaacagtgtggaatgtttcacactttggaagagacactcgggggagcattttcagaggatactgctctcaaataacataatttctgcccacaagtgtgatagccattattatgcgttgagggatgttcttaaaggtttgcctggttctaccgatgaagctgttttctgatgaataaatttcacatatttgctctttttgtgtaaaacaatgatctcatcattccacggcttgtgggaggtagctagctggtccccttgagagtagttgaggtacgtgcaagctgacctttatcaaaacaaagaaataaataatggcaatgttagttgatttacaggtagaaaccattgtccttagagataaaaatagttgtaattttcagcttatacttttatgttttcctgtagtaccaggaaatcttcctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57580" stop="59035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57880" g_stop="58007" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58169" g_stop="58735" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="695" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E373485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57880" e_stop="58007"/>
          <exon e_start="58169" e_stop="58735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTA</genome_strand>
        <mrna_strand>TCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289228" ref_strand="+" ref_description="SGN-E289228 [cLES-18-K7]">
      <seq>tcagaaggaagactggagaggtgtcgtagacttgtttacaaatgcaaagcatgttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaagccaaactaagcactctgagtctacagttccacgtgttcctgatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgaagctgagttgtttgtccccggaactctctatattttgaagaggaatgcaaatgcaagaaaggaaggtaacagtgtggaatgtttcacactttggaagagacactctggggagcattttcagaggatactgctctcaaataacataatttctgcccacaagtgtgatagccattattatgcgttgagggatgttcttaaaggtttgcctggatctaccgatgaagctgttttctgatgaataaatatcacatatttgctctttttgtgtaaaacaatgatctcatcattccacggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57580" stop="58839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57880" g_stop="58007" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58169" g_stop="58539" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="499" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E289228" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57880" e_stop="58007"/>
          <exon e_start="58169" e_stop="58539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGC</genome_strand>
        <mrna_strand>TCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCATGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTCTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCTGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGATCTACCGATGAAGCTGTTTTCTGATGAATAAATATCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373484" ref_strand="+" ref_description="SGN-E373484 [TUS-31-B20](-)">
      <seq>aagcaggttgtatcttctgtgcaagatgtagctcggagacttgctgattatgctaaattacgaagccaaactaagcactctgagtctacagttccacgtgttcctgatacctccaactccaaagtcaatacatcatctcttgtgagacaggaaggcgaagctgagttgtttgtccccggaactctttatattttgaagaggaatgcaaatgcaagaaaggaaggtaacagtgtggaatgtttcacactttggaagagacactcgggggagcattttcagaggatactgctctcaaataacataatttctgcccacaagtgtgatagccattattatgcgttgagggatgttcttaaaggtttgcctggttctaccgatgaagctgttttctgatgaataaatttcacatatttgctctttttgtgtaaaacaatgatctcatcattccacggcttgtgggaggtagctagctggtccccttgagagtagttgaggtacgtgcaagctgacctttatcaaaacaaagaaataaataatggcaatgttagttgatttacaggtagaaaccattgtccttagagataaaaatagttgtaattttcagcttatacttttatgttttcctgtagtaccaggaaatcttcctgtattttcattagtacttcttttagaacatgtactgctgctatacaagcatagccaaatggacaatcaagctaatttttttgatgtttcctttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57626" stop="59131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57926" g_stop="58007" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58169" g_stop="58839" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="753" r_length="671" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E373484" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57926" e_stop="58007"/>
          <exon e_start="58169" e_stop="58839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTGGTATGTTCATGAGCATTGGAATGGCTTGTACTAATTCTACATTTCATTACACTCACAAATCTTTCCTATTTGTCAATTGTCGGGGCCTCTGGGGTATGTGATTCAAGACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGATGTTTCCTTTCTTATATTTGAAAC</genome_strand>
        <mrna_strand>AAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG.................................................................................................................................................................AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGATGTTTCCTTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268904" ref_strand="+" ref_description="SGN-E268904 [cLEM-4-L23]">
      <seq>ttgatacatacaactttgtatcccaagtttcactgtacccacaaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70092" stop="72276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70392" g_stop="70658" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71609" g_stop="71704" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71705" i_stop="71804" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71805" g_stop="71976" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="535" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E268904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70392" e_stop="70658"/>
          <exon e_start="71609" e_stop="71704"/>
          <exon e_start="71805" e_stop="71976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAG</genome_strand>
        <mrna_strand>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709387" ref_strand="+" ref_description="SGN-E709387 [FA51DA06]">
      <seq>aaagtgaattcatctgtttctgaaagcacaactccaaaagatgtcccctttcattctcaaatgcaaaatgagttgaagaaaagggttaaagaccctttgtgtagtagtaacaaattttgcttttgctgcactagaagacactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70134" stop="74545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70434" g_stop="70658" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71609" g_stop="71704" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="321" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71705" i_stop="71804" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71805" g_stop="72023" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="540" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73024" g_stop="73120" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="637" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73121" i_stop="74051" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74052" g_stop="74114" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="700" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74115" i_stop="74212" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74213" g_stop="74245" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="733" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E709387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70434" e_stop="70658"/>
          <exon e_start="71609" e_stop="71704"/>
          <exon e_start="71805" e_stop="72023"/>
          <exon e_start="73024" e_stop="73120"/>
          <exon e_start="74052" e_stop="74114"/>
          <exon e_start="74213" e_stop="74245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGC</genome_strand>
        <mrna_strand>AAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423476" ref_strand="+" ref_description="SGN-E423476 [STM-42-G19]">
      <seq>gaattgaaagaatatgttgatacatacagctttgtatcccaagattcactgtacccagaaaatgaaatcagtgaattcatctgtttctgaaagcacaactttaaaagatgtcccctttcattctcaaatgcaaaatgagttgaatcaattgaagaaaagggttaaagaccctttgagtagtagtaacaagttttgcttttgctgcagtagaagacactttatggcagctgctctattgcctattcatccttcccatgcttctgatgtttcgtctcctgctgactccatggcaatgttgaataggttgcatcctcctaggcctgattggtacgaggagttttatgcaacagccatgaacacaagtatgaaagcttatgaagctgaggttacaagtcagagctttttgctaatctgagaggtcaggccaaacaaatcctcgaaattggcattgggacaggtccaaatttgaagtattatgccagtgaggagggcacttccgtttatggcgttgatccaaacaggaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtcgcagatggtaatctgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70077" stop="73416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70438" g_stop="70658" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="289" r_length="218" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71609" g_stop="71704" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="385" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71705" i_stop="71811" i_length="107">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.483" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71812" g_stop="72023" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="597" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73024" g_stop="73116" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="690" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E423476" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70438" e_stop="70658"/>
          <exon e_start="71609" e_stop="71704"/>
          <exon e_start="71812" e_stop="72023"/>
          <exon e_start="73024" e_stop="73116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTG----AA--GAA--AA-GGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTG</genome_strand>
        <mrna_strand>TGAATTCATCTGTTTCTGAAAGCACAACTTTAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAATCAATTGAAGAAAAGGGTTAAAGACCCTTTGAGTAGTAGTAACAAGTTTTGCTTTTGCTGCAGTAGAAGACAC--T-T---T--A-T--G-GCAGCTGCTCTATTGCCTATTCATCCTTCCCATGCTTCTGATGTTTCGTCTCCTGCTGACTCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTGAATAGGTTGCATCCTCCTAGGCCTGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAAGCTTATGAAGCTGAG...........................................................................................................GTTACAAGTCAGAGCTTTTTGCTAATCTGAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGTCCAAATTTGAAGTATTATGCCAGTGAGGAGGGCACTTCCGTTTATGGCGTTGATCCAAACAGGAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCGCAGATGGTAATCTGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450532" ref_strand="+" ref_description="SGN-E450532 [cSTS-9-J19]">
      <seq>tgttgatacatacagctttgtatcccaagattcactgtacccagaaaatgaaatcagtgaattcatctgtttctgaaagcacaactttaaaagatgtcccctttcattctcaaatgcaaaatgagttgaatcaattgaagaaaagggttaaagaccctttgagtagtagtaacaagttttgcttttgctgcagtagaagacactttatggcagctgctctattgcctattcatccttcccatgcttctgatgtttcgtctcctgctgactccatggcaatgttgaataggttgcatcctcctaggcctgattggtacgaggagttttatgcaacagccatgaacacaagtatgaaagcttatgaagctgaggttacaagtcagagctttttgctaatctgagaggtcaggccaaacaaatcctcgaaattggcattgggacaggtccaaatttgaagtattatgccagtgaggagggcacttccgtttatggcgttgatccaaacaggaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70136" stop="73380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70438" g_stop="70658" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="275" r_length="218" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71609" g_stop="71704" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71705" i_stop="71811" i_length="107">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.483" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71812" g_stop="72023" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="583" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73024" g_stop="73080" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="640" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E450532" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70438" e_stop="70658"/>
          <exon e_start="71609" e_stop="71704"/>
          <exon e_start="71812" e_stop="72023"/>
          <exon e_start="73024" e_stop="73080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTG----A-----AGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTT</genome_strand>
        <mrna_strand>TGAATTCATCTGTTTCTGAAAGCACAACTTTAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAATCAATTGAAGAAAAGGGTTAAAGACCCTTTGAGTAGTAGTAACAAGTTTTGCTTTTGCTGCAGTAGAAGACACTTTAT-G--G--C----AG---CTGCTCTATTGCCTATTCATCCTTCCCATGCTTCTGATGTTTCGTCTCCTGCTGACTCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTGAATAGGTTGCATCCTCCTAGGCCTGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAAGCTTATGAAGCTGAG...........................................................................................................GTTACAAGTCAGAGCTTTTTGCTAATCTGAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGTCCAAATTTGAAGTATTATGCCAGTGAGGAGGGCACTTCCGTTTATGGCGTTGATCCAAACAGGAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318281" ref_strand="+" ref_description="SGN-E318281 [cTOA-29-H3]">
      <seq>cactttatggctgcactaggagcagctgctctattgcctattcatccttcacatgcttctgatgtttcatctcctgctaatcccatggctatgttgaataggttgcatcctccaaggccagattggtacgaggagttttatgcaacagccatgaacacaagtatgaaatcttacgaagctgagattgaaggttacaagtcagagctttttgctaatctaagaggtcaggccaaacaaatcctcgaaattggcattgggacaggcccaaatttgaaatattatgccagtgaggggggcacttccgtttatggcgtcgatccaaacagaaagatggagaaatatgcacaagcagcagcagagactgcaggccttccagctgcgaatttcaaattcctgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtctcagatgttaatctgacactgcaggaggtcagaagggtgctcaagcctggtggtatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgctcgatccgttgcagcaggctgttgcagatggttgtcattttaccaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70272" stop="74595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70572" g_stop="70658" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71609" g_stop="71704" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="183" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71705" i_stop="71804" i_length="100">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71805" g_stop="72023" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="402" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73024" g_stop="73120" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="499" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73121" i_stop="74051" i_length="931">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74052" g_stop="74114" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="562" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74115" i_stop="74212" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74213" g_stop="74295" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="645" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E318281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70572" e_stop="70658"/>
          <exon e_start="71609" e_stop="71704"/>
          <exon e_start="71805" e_stop="72023"/>
          <exon e_start="73024" e_stop="73120"/>
          <exon e_start="74052" e_stop="74114"/>
          <exon e_start="74213" e_stop="74295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATGGTAAAATATATAATGCTTCACTTTTACTCTTTTACCATTTATACGTTGTGTTTGATTGGGCATAGAGTTTAAGAACTATTGAAATGGGATAGAATCTTATATTGATTGGGGAATGTACTGGTGGGCAATCCTCCTGTCGTGAGCTAGCTTATGCAGCCGTGTTGGCCAAAAGGTCATATCTTTCATGATATTAGAGCAGAGTTAGTTCTTGTTTAAGCCCCATGTTACATTGTCCATGCTCCAATTAAGGGTGTTAGAGTGGGTTAGACTTTAGAGTATCACATTGATTCGGGAATGACCAGATGGTTTCCTTATATTGACTTGGGCAAGGGGAGAGCTAGCTTTTGGGTTTTCTTACAAGAAAAAAAAAATTTAAACTGGTTGACTTGTCTGATATAAAATTGGTAATTTTCCCACATATGTAAGTAGACAGTCACAGAATTTAGTTTTTAAGTTGAAAATGTCGAATGCTGGCTGTTAAAGTTGTGAGTTTAAAAGGTCTTTGCTAGTTATTTTCCCAATCTGGAATTAATCATTACAGGGAAGTTTTAACAGTCAGGAAACCGAAGCACGATTTACATACAATTAGTTCATGTTGTTGCATGAAAACGTTCTATGGGGGCAAAGTATTATAAGATTTAGGCTGCTCTTTCCTAAGAGTTATCCAAACTGGTTAAGCAAGAACAATGTGGCAAACTTTGCAGTGAGCCAGATTTGTTCAGATCGTAGTTGCTCAATCGCAATTCAACAAATGTTGCAGTTTTGATAAGATTTAGGCTGCTCTATCCTTAGAGTTATCAGAACTGGTTAGGTAATAACAACGTGACAAATTTTGCAGTGAGAGCGATTTGTTCATATTGTAGTTGCTCAATTTTAATTCAACAAATGTTGCAGTTTCAACATCAATTTGCTTTATAAATGACTTTATCAATCACTGATCTTACATGTAGGCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAGGTTAGCTCATATTGTCCACTTGAGAGCTGCAGAGATTATTTTTAATTAGTAAATAATGGAAATACATAAGATTTTCTGAAGTTATACCTTTTTCTGTAAGATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</genome_strand>
        <mrna_strand>CACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG....................................................................................................ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423477" ref_strand="-" ref_description="SGN-E423477 [STM-42-G19]">
      <seq>aagcagcagcagagactgcaggctttccagctgcgaatttcaaattcntgcatgcagtttctgagtccttgccattacgtgatgcttcagttgatgctgtcattggcactcttgtattatgttctgtcgcagatgttaatctgacactgcaggaggtcagaagggtgctcaggcctggtggcatttacctctttgttgaacatgtggctgcagcagatggtacagctctcagatttgttcagggattgcttgatccgttgcagcaggctgtcgcagatggttgtcattttaccaggaaaacaggaaagaacatatctgaagccggtttcacaaatgtagatagtcgtcaagtcgtattatcaactgcctctctgataaatcctcatatcattggcatagctcgcaactagatatatccaagtgtttacaatggtgtctttgtgaatctttagctcatgatcttgaacttctccacaacatatttcaaccggctagttatattgcccccgaacaacaagggcacaacagttacagtagaattatgcatcatcattttacaagtaaagagatgagtttttattcttattttgtataataacattggcttgattaaaaagagtgacatgatcagtgaagattcatatagccaactcctaacttgttcgatattgaggcgtagtagttgttgtaattgttgtatttttcctgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71668" stop="75017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71968" g_stop="72023" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73024" g_stop="73120" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="153" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73121" i_stop="74051" i_length="931">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74052" g_stop="74114" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="216" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74115" i_stop="74212" i_length="98">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.132" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74213" g_stop="74718" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="717" r_length="501" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E423477" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423477" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71968" e_stop="72023"/>
          <exon e_start="73024" e_stop="73120"/>
          <exon e_start="74052" e_stop="74114"/>
          <exon e_start="74213" e_stop="74718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCAGTACGTAGCTTTAACAAGACTCAATAAATATATATCATCATGGTGTTTAAGTTAGATAATCCGTGCATTTCAATTTGTTTGTTTGGTTTTGACTTGGCACTGAGTTTAAGAAAATAAAGGAGACTTTTGAATCTTGTGGTCCTAAACTAATGATTTGTAGAATGTATAAAAGTACTCTTTAATTTTGTTGTCTTAAATCTAACATGTGGAAAGTTAGAATTAAAGAGTTGTCAATAAAGGAAAGAGGGATTCTTTTTGAAATGGACTCAAAGAAATTAAGACACATAAATAAACTGAGGGGGTAGCTTTTTTGGAGAATGCATTGCAAAGTTATAACAGAATGGCTTTATTGTTAAGCCTACATACTTTTTTCAGCTACAGATTTTAACTTGTAGGCATAAAAGACCTTTTAGGATAAAACATATCTTTTTATGGCTTTCCCTATGATGTGCTTTTGCTATTTCAGTAATCAGTTTAATGCTTCTATGTAACAGCATCAGCATAAACTAGTGTATGGTAATCAAACTATGCTGTTTGTAACCATTCCATTTTTCTTTTTGGTTATTTGCTAGGCATAATTTCTTTCTTTTCTTTTCGGTTATGGATATGATAAATTTTAAGTAATTTTCATTAATTCTTCCCTTTTTCCTCTTATGGCTTTTCGTCATGTGCTATATCCTTTTTCTACTCGGATACTTTTTAGGTGTTCTTCTCTTGTTTGTTCGAGACCCTACTTTTCTTCGTGTATTTCACTTTAGTCATTCTTCCCTCTTCTTTTTGTTGCTTTGCTTACACTTTTTATCAGGGCTCTTCATTGTGTGTATTTTTGGCTGATTAATGTAATGCAAATACCTCAACAGTGTGATTGTTGTATTTTCTTTAGCTGGCACAATGACATACTTTATATGAGCTGGCACCTAGTTACTTACCCGTCATTAACAGGAGATGTATCTAAAACATAATAGGAAACTATAAAGGTGAACTTGATGGTTTCATGCAGGTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGGGTATATAATCTCTTTTAGTTTTATGCTTTCATATTGCAGTTCAATTCATAGGCTTATCCTGCTCACGAATTTCATTGAAGTAGTTCAGTAACCTTCATATCAAACATAAACCTATGTCGTTTAACCATCAGTGCGCCTTTGTATTTAGATTCTTTTTTAGATTCTTTTCATGTATCTTATGTAACATGTATTATCTTGTAAATATTTTTTGTATATTTACAATCTTATCCTAAGTGATGTCCTTCTTTGATGAAGTTTGATGTACTTGTCACATGTTTGAGTTTCCCACTATAAAGATATAGCAAAACAGGCTCATTTCTTTGGCCCTTCACTAAACTTGCTCATTTGCCTGTAGAATCCACTCTTTTTGAACATTTGATTTTTTGCTGTTCAGAGAGCAAAAGTGATTTCGGCATAGGACTTCAATGACCTTATCTTAAAATGTTAACCCTACAAATGCACAAAGTTACCAAAGACGAAGAAGAATTATGCCCCGTTTCTATTTATGCTGCATCTTATATATCTGCTTTTCTGCTAAAATGCTCTTGCTCATCTAAACTTACAGTGACCCTAAAACTTCTAAAAATGTCAGTCTGATATTCGGGTAAATGCAGAATAGTTCTTGTACTGTCAAAAGTATTAACACATAATCCTAATCATGTTAGTCTATAGAACCTCGACTTTCTTTTAATAATTATCTCCATTGGTTCCTGAAGTAGCCGAGCTATTAGTCCAAAATGTTATGGTGACCACGTCGTCTTCATTTAAAAAGTATTGACTATTAGCCAGGATGTTGATGTATGTGTATTTCCTTCTTGTTGCCTGTATACTCTTTCCCTGATCTGCAATTCTGTGTTTACTTTCTTTTCTTCGATAAGGTGGTTGAAAATGGTTTAAGTCCTGATATAATGATTTATCATTTTTCTCTTAGAGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAGGTAAAGATTATATTTACACTCGTTGTATTAAACGTTCCCAAATGTGTTTTCTGCATCAAGTAAAAATTATACTTTTTTCCGGTTGCAATTGGGGAAAGATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCA-TTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCC-AACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</genome_strand>
        <mrna_strand>AAGCAGCAGCAGAGACTGCAGGCTTTCCAGCTGCGAATTTCAAATTCNTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCGCAGATGTTAATCTGACACTGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGAAGGGTGCTCAGGCCTGGTGGCATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG..................................................................................................ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTTGATCCGTTGCAGCAGGCTGTCGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAACATATCTGAAGCCGGTTTCACAAATGTAGATAGTCGTCAAGTCGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAG------ATATATCCAAGTGTTTACAATGGTGTCTTTGTGAATCTTTAGCTCATGATCTTGAA-CTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCCCCGAACAACAAGGGCACAACAGTTACAGTAGAATTATGCATCATCATTTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATGATCAGTGAAGATTCATATAGCCAACTCCTAACTTGTTCGATATTGAGGCGTAGTAGTTGTTGTAATTGTTGTATTTTTCCTGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718798" ref_strand="+" ref_description="SGN-E718798 [FC05DD06]">
      <seq>gatacgagcaaaatagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76062" stop="77570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76361" g_stop="76616" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77270" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="832" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E718798" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76361" e_stop="76616"/>
          <exon e_start="76695" e_stop="77270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCT</genome_strand>
        <mrna_strand>GATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338536" ref_strand="+" ref_description="SGN-E338536 [cTOE-15-A13]">
      <seq>gagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76374" g_stop="76616" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76827" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="376" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E338536" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76374" e_stop="76616"/>
          <exon e_start="76695" e_stop="76827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGA</genome_strand>
        <mrna_strand>GAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707168" ref_strand="+" ref_description="SGN-E707168 [FA32BA04]">
      <seq>cgatattcgagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76616" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77387" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="935" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E707168" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76616"/>
          <exon e_start="76695" e_stop="77387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTG</genome_strand>
        <mrna_strand>CGATATTCGAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699780" ref_strand="+" ref_description="SGN-E699780 [FA11AG07]">
      <seq>agaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgagggaaagctgcaccgaagccagctgtgaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76616" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77247" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="796" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E699780" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76616"/>
          <exon e_start="76695" e_stop="77247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGA-GGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGG</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728960" ref_strand="+" ref_description="SGN-E728960 [LA19CB02]">
      <seq>agaaattctagtagttctacagaacttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgctaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctatagcccctgtaaaagctaaggctgctgttaagccaaaagcggctaatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76616" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77170" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="718" r_length="476" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E728960" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76616"/>
          <exon e_start="76695" e_stop="77170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAA</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGAACTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCTAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTATAGCCCCTGTAAAAGCTAAGGCTGCTGTTAAGCCAAAAGCGGCTAATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568586" ref_strand="+" ref_description="SGN-E568586 [12891]">
      <seq>agaaattccagtagttctaccgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactggtaccaaatcaaaagctaagccaaanactgttgttgctgctaaagctaaancaggtgcaaagtctaaggcagttgtagtaaanacgaaagcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76616" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77109" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="657" r_length="415" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E568586" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76616"/>
          <exon e_start="76695" e_stop="77109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTG</genome_strand>
        <mrna_strand>AGAAATTCCAGTAGTTCTACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGGTACCAAATCAAAAGCTAAGCCAAANACTGTTGTTGCTGCTAAAGCTAAANCAGGTGCAAAGTCTAAGGCAGTTGTAGTAAANACGAAAGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315012" ref_strand="+" ref_description="SGN-E315012 [cTOB-4-C24]">
      <seq>agaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76616" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76919" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="467" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E315012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76616"/>
          <exon e_start="76695" e_stop="76919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAG</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303965" ref_strand="+" ref_description="SGN-E303965 [cLEX-4-H6]">
      <seq>agaaattctagtagttctacagattttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatacttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76375" g_stop="76616" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="430" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E303965" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76375" e_stop="76616"/>
          <exon e_start="76695" e_stop="76882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</genome_strand>
        <mrna_strand>AGAAATTCTAGTAGTTCTACAGATTTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATACTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731444" ref_strand="+" ref_description="SGN-E731444 [LA27AF02]">
      <seq>gaaattctagtacttttaagatcttagaaaccctaattattatattctgtaaacatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactangtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77271" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="817" r_length="577" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E731444" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="77271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</genome_strand>
        <mrna_strand>GAAATTCTAGTACTTTTA-AGATCTTAGAAACCCTAATTATTATATTCTGTAAACATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTANGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704276" ref_strand="+" ref_description="SGN-E704276 [FA23DD04]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77271" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="818" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E704276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="77271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730206" ref_strand="+" ref_description="SGN-E730206 [LA23BF04]">
      <seq>gaccttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgaggtaaaattggttatagatttgttattagtcgaagttgttgtttaatttgccgatcagctaacttgaaatgctatgcagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcacctgtaaagcctaaaccccctgtaaaaagctaaggctgctgtaaagcccaaaagcggctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="77167" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E730206" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="77167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGT-AAAAGCTAAGGCTGCTGTAAAG-CCAAAAGCGGCTAATGA</genome_strand>
        <mrna_strand>GACCTTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCACCTGTAAAGCCTAAACCCCCTGTAAAAAGCTAAGGCTGCTGTAAAGCCCAAAAGCGGCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342665" ref_strand="+" ref_description="SGN-E342665 [cTOF-7-N21]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagccctgttgttgctgccaaagctaaaccagctgcaaagcctaanggcagntgtagcaaagccgaaagcagctgtaaagcctnaagcccctgtaaaagctaaggctgctgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77150" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="698" r_length="457" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E342665" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="77150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAG-CCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAA-GGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCC-AAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAANGGCAGNTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTNAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345410" ref_strand="+" ref_description="SGN-E345410 [cTOF-13-B23]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77131" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="678" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E345410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="77131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAA</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338454" ref_strand="+" ref_description="SGN-E338454 [cTOE-15-M14]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76944" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="491" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E338454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="76944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCAC</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273554" ref_strand="+" ref_description="SGN-E273554 [cLEN-6-J21]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="429" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E273554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="76882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298164" ref_strand="+" ref_description="SGN-E298164 [cLEW-9-K20]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttgctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="77156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76616" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76856" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="403" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E298164" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76616"/>
          <exon e_start="76695" e_stop="76856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTGCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322892" ref_strand="+" ref_description="SGN-E322892 [cTOB-30-A13]">
      <seq>gaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgtacccaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="76842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76376" g_stop="76542" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E322892" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76376" e_stop="76542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAG</genome_strand>
        <mrna_strand>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGTACCCAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746601" ref_strand="+" ref_description="SGN-E746601 [GI|47104149]">
      <seq>cctcgtgccgagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76616" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="252" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77482" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="1040" r_length="788" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1041" polyA_stop="1054"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E746601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76616"/>
          <exon e_start="76695" e_stop="77482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328153" ref_strand="+" ref_description="SGN-E328153 [cTOC-21-E15]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76077" stop="77466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76616" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77166" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="712" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E328153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76616"/>
          <exon e_start="76695" e_stop="77166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATG</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260128" ref_strand="+" ref_description="SGN-E260128 [cLEG-52-M21]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaggccaaaactgctaccaaatcaaaagctaagccaagcctgttgttgctgccaaagctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76077" stop="77364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76616" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77064" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="608" r_length="368" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E260128" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76616"/>
          <exon e_start="76695" e_stop="77064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAAC</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCC-AAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCC-AAGCCTGTTGTTGCTGCCAAAGCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578583" ref_strand="+" ref_description="SGN-E578583 [85702]">
      <seq>taaatccagtagttctaccgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctgggtaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76077" stop="77237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76616" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76937" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="483" r_length="243" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E578583" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76616"/>
          <exon e_start="76695" e_stop="76937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAA</genome_strand>
        <mrna_strand>TAAATCCAGTAGTTCTACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGGTAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270721" ref_strand="+" ref_description="SGN-E270721 [cLEM-6-J19]">
      <seq>ctcgtgccgagaaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaagaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76075" stop="77183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76616" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="251" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76883" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="440" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E270721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76616"/>
          <exon e_start="76695" e_stop="76883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCT</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAAGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289701" ref_strand="+" ref_description="SGN-E289701 [cLET-4-M5]">
      <seq>aaattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76077" stop="77055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76616" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76755" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="301" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E289701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76616"/>
          <exon e_start="76695" e_stop="76755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCA</genome_strand>
        <mrna_strand>AAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325288" ref_strand="+" ref_description="SGN-E325288 [cTOC-1-F7]">
      <seq>aattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76078" stop="77350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76378" g_stop="76616" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77050" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="595" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E325288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76378" e_stop="76616"/>
          <exon e_start="76695" e_stop="77050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGC</genome_strand>
        <mrna_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727084" ref_strand="+" ref_description="SGN-E727084 [LA13CG05]">
      <seq>aattctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataannanaaaaatcttccatcaaatttcaagaaaatgttgcttgctcaattgaataagcttgtggcttctggaaaacttgtcaaggtgaagagctcctactagcttccggctccaaaggcagctgctcctgctcttgctaagaataagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggctgatccgaatccaaaaccttaggttgctgctccaaaggccaaaactgctaccaaatcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76078" stop="77329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76378" g_stop="76616" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77029" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="574" r_length="335" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E727084" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76378" e_stop="76616"/>
          <exon e_start="76695" e_stop="77029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGC</genome_strand>
        <mrna_strand>AATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAANNANAAAAATCTTCCATCAAATTTCAAGAAAATGTTGCTTGCTCAATTGAATAAGCTTGTGGCTTCTGGAAAACTTGTCAAGGTGAAGAGCTCCTACTAGCTTCCGGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAATAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCTGATCCGAATCCAAAACCTTAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709336" ref_strand="+" ref_description="SGN-E709336 [FA51BH12]">
      <seq>cgtctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaacagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactangtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76081" stop="77581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76379" g_stop="76616" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77281" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="825" r_length="587" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E709336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76379" e_stop="76616"/>
          <exon e_start="76695" e_stop="77281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAA</genome_strand>
        <mrna_strand>CGTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAACAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTANGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318326" ref_strand="+" ref_description="SGN-E318326 [cTOA-29-G9]">
      <seq>attctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatctaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgcaacattgaaggataaaactggatcgagtcagtatgcgatcactaagttcattgaagataagcagaaaaatcttccatcagatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaataagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaagaccaaaggttgctgctccaaaggccaaaactgctaccagatcaaaagctaagccagagcctgttggtgctgccacagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtatagcctaaagcccctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76079" stop="77428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76379" g_stop="76616" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77128" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="672" r_length="434" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E318326" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76379" e_stop="76616"/>
          <exon e_start="76695" e_stop="77128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGT</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCTAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGCAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACTAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAGATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAATAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAGACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAGATCAAAAGCTAAGCCAGAGCCTGTTGGTGCTGCCACAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTATAGCCTAAAGCCCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342152" ref_strand="+" ref_description="SGN-E342152 [cTOF-10-B19]">
      <seq>attctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttactactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctgcaaaggcagctgctcctgctcttgctaagaaaaagtccatagctnaggccataagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcatagccgaaagcagctgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76079" stop="77415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76379" g_stop="76616" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77115" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="660" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E342152" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76379" e_stop="76616"/>
          <exon e_start="76695" e_stop="77115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAA-GCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGC</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTACTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTGCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTNAGGCCATAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCATAGCCGAAAGCAGCTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367023" ref_strand="+" ref_description="SGN-E367023 [cLPT-6-P23]">
      <seq>attctagtagttctacagatcttagaaaccctaatttgtattttctgtaaagatggcgactgaagagccagttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaaaagaaatcctccgactcatccttcctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76079" stop="76913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76379" g_stop="76613" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E367023" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76379" e_stop="76613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTT</genome_strand>
        <mrna_strand>ATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTTGTATTTTCTGTAAAGATGGCGACTGAAGAGCCAGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAAAGAAATCCTCCGACTCATCCTTCCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320901" ref_strand="+" ref_description="SGN-E320901 [cTOB-13-C17]">
      <seq>ttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76080" stop="77252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76380" g_stop="76616" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76952" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="495" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E320901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76380" e_stop="76616"/>
          <exon e_start="76695" e_stop="76952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAG</genome_strand>
        <mrna_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318115" ref_strand="+" ref_description="SGN-E318115 [cTOA-29-N7]">
      <seq>ttctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76080" stop="77241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76380" g_stop="76616" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76941" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="484" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E318115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76380" e_stop="76616"/>
          <exon e_start="76695" e_stop="76941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAG</genome_strand>
        <mrna_strand>TTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323312" ref_strand="+" ref_description="SGN-E323312 [cTOB-28-N4]">
      <seq>tctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagcccagctaggtagcaaggacatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76081" stop="77497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76381" g_stop="76616" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77197" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="739" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E323312" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76381" e_stop="76616"/>
          <exon e_start="76695" e_stop="77197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAG-CCAGCTAAGGTAGCAAGGACATCTAC</genome_strand>
        <mrna_strand>TCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCCAGCT-AGGTAGCAAGGACATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316787" ref_strand="+" ref_description="SGN-E316787 [cTOB-6-M7]">
      <seq>ctagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76082" stop="77285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76382" g_stop="76616" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76985" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="526" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E316787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76382" e_stop="76616"/>
          <exon e_start="76695" e_stop="76985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCA</genome_strand>
        <mrna_strand>CTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318351" ref_strand="+" ref_description="SGN-E318351 [cTOA-29-K14]">
      <seq>tagtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76083" stop="77434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76383" g_stop="76616" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77134" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="674" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E318351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76383" e_stop="76616"/>
          <exon e_start="76695" e_stop="77134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</genome_strand>
        <mrna_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467744" ref_strand="+" ref_description="SGN-E467744 [cSTB-1-J13]">
      <seq>cagtagttctacagatcttagaaatcctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaattgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccactggcggatactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgttaaggttaagagttcctacaagcttccagctccaaaggcagctgctactgcgcccgctaagaagaagccggtagctaagccaaaagcaacacaggcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76084" stop="77252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76383" g_stop="76616" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76952" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="492" r_length="258" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E467744" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76383" e_stop="76616"/>
          <exon e_start="76695" e_stop="76952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAG</genome_strand>
        <mrna_strand>CAGTAGTTCTACAGATCTTAGAAATCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATTGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACTGGCGGATACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTTAAGGTTAAGAGTTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTACTGCGCCCGCTAAGAAGAAGCCGGTAGCTAAGCCAAAAGCAACACAGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411089" ref_strand="+" ref_description="SGN-E411089 [STM-14-I5]">
      <seq>cagtagttctacagatcttagaaatcctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaattgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccactggcggatactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76084" stop="76883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76383" g_stop="76583" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E411089" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76383" e_stop="76583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAG</genome_strand>
        <mrna_strand>CAGTAGTTCTACAGATCTTAGAAATCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATTGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACTGGCGGATACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592017" ref_strand="+" ref_description="SGN-E592017 [45742]">
      <seq>gtagttctaccgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaaacctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagtaaaaccgaaagcagctgttaagcccaaagcccctgtgaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctacaaggtcgactccgtcgaggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76085" stop="77521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76385" g_stop="76616" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77221" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="759" r_length="527" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E592017" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76385" e_stop="76616"/>
          <exon e_start="76695" e_stop="77221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGC</genome_strand>
        <mrna_strand>GTAGTTCTACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAACCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGTAAAACCGAAAGCAGCTGTTAAGCCCAAAGCCCCTGTGAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAGGTCGACTCCGTCGAGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341411" ref_strand="+" ref_description="SGN-E341411 [cTOE-23-N1]">
      <seq>gtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76085" stop="77277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76385" g_stop="76616" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76977" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="515" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E341411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76385" e_stop="76616"/>
          <exon e_start="76695" e_stop="76977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGC</genome_strand>
        <mrna_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338054" ref_strand="+" ref_description="SGN-E338054 [cTOE-14-H24]">
      <seq>gtagttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76085" stop="77105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76385" g_stop="76616" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76805" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="343" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E338054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76385" e_stop="76616"/>
          <exon e_start="76695" e_stop="76805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAA</genome_strand>
        <mrna_strand>GTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699631" ref_strand="+" ref_description="SGN-E699631 [FA10DA07]">
      <seq>agttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtaccaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76087" stop="77435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76387" g_stop="76616" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77135" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="671" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E699631" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76387" e_stop="76616"/>
          <exon e_start="76695" e_stop="77135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCT</genome_strand>
        <mrna_strand>AGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTACCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701816" ref_strand="+" ref_description="SGN-E701816 [FA17AB02]">
      <seq>gttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76088" stop="77583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76388" g_stop="76616" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77283" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="818" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E701816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76388" e_stop="76616"/>
          <exon e_start="76695" e_stop="77283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGT</genome_strand>
        <mrna_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706489" ref_strand="+" ref_description="SGN-E706489 [FA30AD10]">
      <seq>gttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaagtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76088" stop="77568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76388" g_stop="76616" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77268" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="803" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E706489" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76388" e_stop="76616"/>
          <exon e_start="76695" e_stop="77268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAAT</genome_strand>
        <mrna_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAAGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599935" ref_strand="+" ref_description="SGN-E599935 [52935]">
      <seq>gttctacagatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgctactgcgcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgttgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagactaaagcccctgttgaaagctaaggctgctgttaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctacaaggtcgactccgtcgaggaaagctgcaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76088" stop="77529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76388" g_stop="76616" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77229" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="766" r_length="537" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E599935" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76388" e_stop="76616"/>
          <exon e_start="76695" e_stop="77229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTG-TAAAAGCTAAGGCTGCTG-TAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGA</genome_strand>
        <mrna_strand>GTTCTACAGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTACTGCGCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGTTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGACTAAAGCCCCTGTTGAAAGCTAAGGCTGCTGTTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAGGTCGACTCCGTCGAGGAAAGCTGCACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326247" ref_strand="+" ref_description="SGN-E326247 [cTOC-16-N6]">
      <seq>ttctacagatcttagaaaccctaattattatatttctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcttctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76089" stop="77498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76389" g_stop="76616" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77198" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="733" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E326247" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76389" e_stop="76616"/>
          <exon e_start="76695" e_stop="77198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATT-CTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCTTCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326865" ref_strand="+" ref_description="SGN-E326865 [cTOC-25-E16]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76089" stop="77497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76389" g_stop="76616" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77197" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="731" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E326865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76389" e_stop="76616"/>
          <exon e_start="76695" e_stop="77197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTAC</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347792" ref_strand="+" ref_description="SGN-E347792 [cTOF-26-L15]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagccccctgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76089" stop="77434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76389" g_stop="76616" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77134" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="668" r_length="440" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E347792" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76389" e_stop="76616"/>
          <exon e_start="76695" e_stop="77134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCCTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327690" ref_strand="+" ref_description="SGN-E327690 [cTOC-20-E19]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76089" stop="77415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76389" g_stop="76616" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77115" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="649" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E327690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76389" e_stop="76616"/>
          <exon e_start="76695" e_stop="77115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGC</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310328" ref_strand="+" ref_description="SGN-E310328 [cTOA-1-K3]">
      <seq>ttctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaattctccgactcatccttcctactttgagatgattaaggaagcgattgttacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76089" stop="77114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76389" g_stop="76616" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76814" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="348" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E310328" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76389" e_stop="76616"/>
          <exon e_start="76695" e_stop="76814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTT</genome_strand>
        <mrna_strand>TTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATTCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTTACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209115" ref_strand="+" ref_description="SGN-E209115 [cLEC-38-M5]">
      <seq>tctacagatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagatgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76090" stop="77274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76390" g_stop="76616" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76974" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E209115" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76390" e_stop="76616"/>
          <exon e_start="76695" e_stop="76974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGA</genome_strand>
        <mrna_strand>TCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGATGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709125" ref_strand="+" ref_description="SGN-E709125 [FA42DA10]">
      <seq>cgcttatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaaatgatcgaatgtaagaggaagggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76097" stop="77645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76392" g_stop="76616" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77346" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="877" r_length="652" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E709125" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76392" e_stop="76616"/>
          <exon e_start="76695" e_stop="77346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAG</genome_strand>
        <mrna_strand>CGCTTATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAATGATCGAATGTAAGAGGAAGGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573008" ref_strand="+" ref_description="SGN-E573008 [32251]">
      <seq>accgatcttagaaaccctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaaacctgttgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76093" stop="77351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76393" g_stop="76616" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77051" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="581" r_length="357" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E573008" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76393" e_stop="76616"/>
          <exon e_start="76695" e_stop="77051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCT</genome_strand>
        <mrna_strand>ACCGATCTTAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAACCTGTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707567" ref_strand="+" ref_description="SGN-E707567 [FA33BE06]">
      <seq>catttcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtngaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76094" stop="77654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76394" g_stop="76616" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77354" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="883" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E707567" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76394" e_stop="76616"/>
          <exon e_start="76695" e_stop="77354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAA</genome_strand>
        <mrna_strand>CATTTCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTNGAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321596" ref_strand="+" ref_description="SGN-E321596 [cTOB-25-I12]">
      <seq>cagatctcagaaaccctaattattatatgctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcaggatgcgatcacaaagctcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagctgccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgcgccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76094" stop="77366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76394" g_stop="76616" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77066" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="595" r_length="372" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E321596" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76394" e_stop="76616"/>
          <exon e_start="76695" e_stop="77066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCA</genome_strand>
        <mrna_strand>CAGATCTCAGAAACCCTAATTATTATATGCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGGATGCGATCACAAAGCTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTGCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCGCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345158" ref_strand="+" ref_description="SGN-E345158 [cTOF-22-J22]">
      <seq>agatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaagcctaagggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76095" stop="77543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76395" g_stop="76616" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77005" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="533" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77006" i_stop="77070" i_length="65">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77071" g_stop="77243" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="707" r_length="174" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E345158" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76395" e_stop="76616"/>
          <exon e_start="76695" e_stop="77005"/>
          <exon e_start="77071" e_stop="77243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAA-GGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</genome_strand>
        <mrna_strand>AGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGC.................................................................CAAAGCCTAAGGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745002" ref_strand="+" ref_description="SGN-E745002 [GI|3021486]">
      <seq>cggcacgaggatcttagaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76093" stop="79544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76397" g_stop="76616" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="230" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77483" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="1019" r_length="789" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77484" i_stop="79228" i_length="1745">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79229" g_stop="79245" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1020" r_stop="1036" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E745002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1026</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76397" e_stop="76616"/>
          <exon e_start="76695" e_stop="77483"/>
          <exon e_start="79229" e_stop="79245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAGTATAGTCGGTCAAATACTGAAATGCATCATCGTTAATTTTCCTTTTATGATGCACATAATTGGTTTTAACTTTTACATTATAACAAAAATCTAATTTCTCGGCGCATTGAAACGCAGTATAAATGTGTATTATATTCAAAAGATAACGTAATAAATTGAGCTAAATTAAATTGAAGAGGCTAAACTGAAAATTCAAAACCTAAATTGGACGAGACATTATACATCAGTAAGGTGTCCTTAAAAAAAATTATAATTGTGTATTTCAATCCATCTCAACCTATTAATAATTGTGTTGATTTGCAACTCAAATTAACTCATCAGAAGTTTTATAAATTGTTTTTTTTTTCTAGTTTGATATATTATTTATAGCCAATAGTAAAGAAAAAATATTTTTTTATTGGTACAAAAAAACTTCTAAACGAACAATTAAACTTAGTAAATGAGCTGATTTGGATCTTGATTCATTTTGTAACCCATTTTTTAACCCGACCCCTTTTAACCCAAGTAAAATTGAATTGAGTTGGATTTTAACTTATTATTGTCTTGACCCATTATAATTTGTTCAAATTTGACACAATTCGTTTAATTGTCACCTCTACATAAATTACACAATTCAACATAATTATATTAATAATTTCACAAAAAAGTAATAGTGCAAAATATTATTCTAATAATGTTCTCTTATTAAGTGTGCATTATTTTCACAAATTTACTTAATGCGGATTAAAAAATATAATACACTTAGTACAGATATAATTTATAACCTCATTGAAATCAATAAAACATTCACATGACAAAATCTAGTTAAAAATTAAGCTTGAATTTCAAGTGAACATTGCCCTATTAAATATGAATGAATCTACTTATTATTTTATATATGTATTTCCTCATAACTTAAACACTTACTAATATGAAGTTCGGAGCCTAAAGGTTACAAAATATTAACAAAAATTTTAAAATGGTATATAAAATTTTATATTAATCAAAACGGCAAAGTCGCTGCATCAACAGCGATTTACTCCACCGGAAAAAGCAAAATCGCTGCAGAGGCAGTGATTTTACAAAATGTGAATTTTTTTTTTAAAAAAATGAAATCGCTACCTAGGCAGCAATTTAAATTTTTTTTTAAAAAAATAAGGAAAATCGCTGCCTAGGCAGCGATTTTTTTTAAAAAAAAGTTGAAATGTGGAAGTCGCTGCCCAGGCAGCGACTTTTATAATTTTTATTTTTTGTTTTAATTTTTAAGATTTTTTTTTTTAAAAAAATTATAAAATTTATAAATCGCTGCCTAGGCAGTGGTTTTTTTTAAAAAAAAAACTTATAAATTTTTTTAAATCGCTACCTACACAGCGATTTATAAATTTATTTTTTTTAAAATATGTAAATCGCTTACCGAATTTATAATTTTTTTTTAAAATATGGAAATCACTGCAATTTTCCAAAAATAATTTTTTTTAAAAATAAAATTTAAAGCAACGATTTTGTAAAAAAATATTATTAAATTTTTTTATTTTATAAAATTTCTGCTTTAAATTTTTATTTTTTTTTAAAAAAAATCCATATTGTCTCCATATTTTTTAAGAAAAAAATTTAAAAATTAAAAAAAAATTATAAAAGTCGGTGCCTGGGCAGCGACTTGCACATTTCAAAAACGAATTTTGTATAAAAGTCGCTGCCTTGGCAGCGACTTCCACATTTCAAAAAAAAAAAAAAAAT</genome_strand>
        <mrna_strand>ATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708082" ref_strand="+" ref_description="SGN-E708082 [FA34DC03]">
      <seq>cttttaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaattttctggatctttgtgggtggtttgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76099" stop="77687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76399" g_stop="76616" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77387" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="911" r_length="693" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E708082" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76399" e_stop="76616"/>
          <exon e_start="76695" e_stop="77387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTG</genome_strand>
        <mrna_strand>CTTTTAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTTCTGGATCTTTGTGGGTGGTTTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573782" ref_strand="+" ref_description="SGN-E573782 [33146]">
      <seq>tagaaaccctaatttgaagtttctgcaaagatggcgatctgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggctaaaactgctaccaaatcaaaagctaagccaaaacctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagtaaaaccgaaagcagctgttaagcccaaagcccctgtgaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctacaaggtcgactccgtcgaggaaagctgcacccgaagccagctgctaaaaaaggcgcccggtgaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76121" stop="77559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76401" g_stop="76616" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77261" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="787" r_length="570" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E573782" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76401" e_stop="76616"/>
          <exon e_start="76695" e_stop="77261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAACCCTAATTATTATATTCTGTAAAGATGGCGA-CTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCA-CCGAAGCCAGCTG-TGAAAAAGGC-ACCGGTGAAGAGT</genome_strand>
        <mrna_strand>TAGAAACCCTAATTTGAAGTTTCTGCAAAGATGGCGATCTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCTAAAACTGCTACCAAATCAAAAGCTAAGCCAAAACCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGTAAAACCGAAAGCAGCTGTTAAGCCCAAAGCCCCTGTGAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAGGTCGACTCCGTCGAGGAAAGCTGCACCCGAAGCCAGCTGCTAAAAAAGGCGCCCGGTGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726781" ref_strand="+" ref_description="SGN-E726781 [LA12DB12]">
      <seq>gaaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtngaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaggcaaagaagtgatcgaatgtangaggaagggtagcattngtaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76103" stop="77719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76403" g_stop="76616" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77419" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="938" r_length="724" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E726781" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76403" e_stop="76616"/>
          <exon e_start="76695" e_stop="77419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTC</genome_strand>
        <mrna_strand>GAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTNGAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGG-AGGCAAAGAAGTGATCGAATGTANGAGGAAGGGTAGCATTNGTAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333747" ref_strand="+" ref_description="SGN-E333747 [cTOD-22-K14]">
      <seq>aaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76104" stop="77498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76404" g_stop="76616" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77198" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="717" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E333747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76404" e_stop="76616"/>
          <exon e_start="76695" e_stop="77198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</genome_strand>
        <mrna_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333326" ref_strand="+" ref_description="SGN-E333326 [cTOD-20-B20]">
      <seq>aaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76104" stop="77477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76404" g_stop="76616" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77177" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="696" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E333326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76404" e_stop="76616"/>
          <exon e_start="76695" e_stop="77177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCT</genome_strand>
        <mrna_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334539" ref_strand="+" ref_description="SGN-E334539 [cTOD-23-H6]">
      <seq>aaaccctaattattatattctgtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76104" stop="77434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76404" g_stop="76616" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77134" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="653" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E334539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76404" e_stop="76616"/>
          <exon e_start="76695" e_stop="77134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</genome_strand>
        <mrna_strand>AAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569540" ref_strand="+" ref_description="SGN-E569540 [13992]">
      <seq>cctaatttgaagtttctgcaaagatggcgactgaagaaccagttgtagcaatcgagcctgtgaatgaacaggtggcggtagctgaaccggcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaagcatctgctccgagaaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgttcaattgaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgttactgctcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaagcaaccaaggcaaagccgaagccaaaaacaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76121" stop="77291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76408" g_stop="76616" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76991" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="505" r_length="296" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E569540" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76408" e_stop="76616"/>
          <exon e_start="76695" e_stop="76991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTT</genome_strand>
        <mrna_strand>CCTAATTTGAAGTTTCTGCAAAGATGGCGACTGAAGAACCAGTTGTAGCAATCGAGCCTGTGAATGAACAGGTGGCGGTAGCTGAACCGGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAAGCATCTGCTCCGAGAAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGTTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGTTACTGCTCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAA-GCAACCAAGGCAAAGCCGAAGCCAAAAACAAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702129" ref_strand="+" ref_description="SGN-E702129 [FA17DE08]">
      <seq>gtaaagatggcgactgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagcctaaagcggctaatgagaagccagctaaggtagcaaggacatctactangtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtangaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76125" stop="77690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76425" g_stop="76616" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77390" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="888" r_length="696" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E702129" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76425" e_stop="76616"/>
          <exon e_start="76695" e_stop="77390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGG</genome_strand>
        <mrna_strand>GTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCTAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTANGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTANGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721333" ref_strand="+" ref_description="SGN-E721333 [FC13CA12]">
      <seq>ctgaagagccggttgtagcaatcgagcctgtgaatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76138" stop="77357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76438" g_stop="76616" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77057" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="542" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E721333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76438" e_stop="76616"/>
          <exon e_start="76695" e_stop="77057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAA</genome_strand>
        <mrna_strand>CTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295695" ref_strand="+" ref_description="SGN-E295695 [cLET-25-H6]">
      <seq>aagagccggatgtttcaatcgattctgttaatgaaccgatggtgggggctgaggcctgcggcggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtgacattgaaggataaaactggatcgagttagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaattttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgacaaggtgaagagctcctacaagcttccaactccaaaggcagctgctcctgctcttgctaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76194" stop="77217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76441" g_stop="76616" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="76917" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="401" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E295695" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76441" e_stop="76616"/>
          <exon e_start="76695" e_stop="76917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGA-ACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAA-TTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAA</genome_strand>
        <mrna_strand>AAGAGCCGGATGTTTCAATCGATTCTGTTAATGAACCGATGGTGGGGGCTGAGGCCTGCGGCGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTGACATTGAAGGATAAAACTGGATCGAGTTAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGACAAGGTGAAGAGCTCCTACAAGCTTCCAACTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708641" ref_strand="+" ref_description="SGN-E708641 [FA36BC12]">
      <seq>caatgaaccgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaaaaagtgatcgaatgtaggaggaagggtaacattgtaaattttttggatctttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76170" stop="77673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76469" g_stop="76616" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77373" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="827" r_length="679" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E708641" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76469" e_stop="76616"/>
          <exon e_start="76695" e_stop="77373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGG</genome_strand>
        <mrna_strand>CAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAAAAGTGATCGAATGTAGGAGGAAGGGTAACATTGTAAATTTTTTGGATCTTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724282" ref_strand="+" ref_description="SGN-E724282 [FC23CE07]">
      <seq>accgatggtcgtagctgaacctgcgacggaagaaaatccaccggcggagactgatgaaccaaagaaagagaaggagatcaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaggaagcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcattgaagataagcagaaaaatcttccatcaaatttcaggaaaatgttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcaactgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76175" stop="77453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76475" g_stop="76616" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77153" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="601" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E724282" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76475" e_stop="76616"/>
          <exon e_start="76695" e_stop="77153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCA</genome_strand>
        <mrna_strand>ACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAACTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621628" ref_strand="+" ref_description="SGN-E621628 [75376]">
      <seq>taaaggcgaaaaaatcatctgctccgaggaagagaaatcctccgactcatccttcctactttgagatgattaaagaggcgattgtaacattgaaggataaaactggatcgagtcagtatgcgatcacaaagttcaattgaagataagcagaaaaaatcttccatcaaatttcaggaaaatgttgcttggtacaattggaagaagcttgtggcttctggtaaacttgtcaaggttaagagctcctacaagcttccagctccaaaggcagctgctactgcgcctgctaagaagaagccagtagctaagccaaaagcaacacaggcaaagaaggcaaccaaggcaaagccgaagccaaaaccaaaggttgttgctccaaaggctaaagactgctaccaaatcaagaagctaagccaaagcctgttgttgctgctaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaacagcagctgtaaagactaaagcccctgtaaaagctaaggctgctgtaaagccaaaagctgctaatgagaagccagctaaggtagcaaggacatctacaaagtcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76252" stop="77505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76552" g_stop="76616" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76695" g_stop="77206" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="584" r_length="519" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E621628" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76552" e_stop="76616"/>
          <exon e_start="76695" e_stop="77206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTC-ATTGAAGATAAGCAG-AAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCT-CAATT-GAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAA-ACTGCTACCAAATCAA-AAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAA-AGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGAC</genome_strand>
        <mrna_strand>TAAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG..............................................................................ATGATTAAAGAGGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCAATTGAAGATAAGCAGAAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGGTACAATTGGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTTAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTACTGCGCCTGCTAAGAAGAAGCCAGTAGCTAAGCCAAAAGCAACACAGGCAAAGAAGGCAACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGTTGCTCCAAAGGCTAAAGACTGCTACCAAATCAAGAAGCTAAGCCAAAGCCTGTTGTTGCTGCTAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAACAGCAGCTGTAAAGACTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCTGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACAAAGTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554626" ref_strand="+" ref_description="SGN-E554626 [cTSC-4-O16]">
      <seq>aagagaagataattagagcataaactcaactaaaatggattattatataaaataaaaaaaacgaaaattacaactggaatttaaaatactattttctatattgggccgcagatacaaaccacccacaaagatccaagaaatttacaatgctacccttcctcctacattcgatcacttctttgccttcctggcggatgctttcttcgccggcgacttcacggtcttagatttcacactcttcaccggtgcctttttcacagctggcttcggtgcagctttcctcgacggagtcgacctagtagatgtccttgctaccttagctggcttctcattagccgcttttggctttacagcagccttagcttttacaggggctttaggctttacagctgctttcggctttgctacaactgccttaggctttgcagctggtttagctttggcagcaacaacaggctttggcttagcttttgatttggtagcagttttggcctttggagcagcaacctttggttttggcttcggctttgccttggtggccttctttgcctgtgctgcttttggcttagctatggactttttcttagcaagagcaggagcagctgcctttggagctggaagcttgtaggagctcttcaccttgacaagtttaccagaagccacaagcttcttcaattgagcaagcaacattttcctgaaatttgatggaagatttttctgcttatcttcaatgaactttgtgatcgcatactgactcgatccagttttatccttcaatgttacaatcgcttccctaatcatctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77795" stop="76390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77495" g_stop="76690" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E554626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77495" e_stop="76690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTGGTAGCAGTTTTGGCCTTTGGAGCAGCAACCTTTGGTTTTGGCTTCGGCTTTGCCTTGGTGGCCTTCTTTGCCTGTGCTGCTTTTGGCTTAGCTATGGACTTTTTCTTAGCAAGAGCAGGAGCAGCTGCCTTTGGAGCTGGAAGCTTGTAGGAGCTCTTCACCTTGACAAGTTTACCAGAAGCCACAAGCTTCTTCAATTGAGCAAGCAACATTTTCCTGAAATTTGATGGAAGATTTTTCTGCTTATCTTCAATGAACTTTGTGATCGCATACTGACTCGATCCAGTTTTATCCTTCAATGTTACAATCGCTTCCTTAATCATCTGCA</genome_strand>
        <mrna_strand>AAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTGGTAGCAGTTTTGGCCTTTGGAGCAGCAACCTTTGGTTTTGGCTTCGGCTTTGCCTTGGTGGCCTTCTTTGCCTGTGCTGCTTTTGGCTTAGCTATGGACTTTTTCTTAGCAAGAGCAGGAGCAGCTGCCTTTGGAGCTGGAAGCTTGTAGGAGCTCTTCACCTTGACAAGTTTACCAGAAGCCACAAGCTTCTTCAATTGAGCAAGCAACATTTTCCTGAAATTTGATGGAAGATTTTTCTGCTTATCTTCAATGAACTTTGTGATCGCATACTGACTCGATCCAGTTTTATCCTTCAATGTTACAATCGCTTCCCTAATCATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345656" ref_strand="+" ref_description="SGN-E345656 [cTOF-18-M22]">
      <seq>ttccatcaaatttcaggaaaatggttgcttgctcaattgaagaagcttgtggcttctggtaaacttgtcaaggtgaagagctcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76486" stop="77727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76786" g_stop="77427" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E345656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76786" e_stop="77427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCAAATTTCAGGAAAAT-GTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTA</genome_strand>
        <mrna_strand>TTCCATCAAATTTCAGGAAAATGGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294124" ref_strand="+" ref_description="SGN-E294124 [cLET-13-F13]">
      <seq>tcctacaagcttccagctccaaaggcagctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76566" stop="77770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76866" g_stop="77470" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="616"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E294124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76866" e_stop="77470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</genome_strand>
        <mrna_strand>TCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344067" ref_strand="+" ref_description="SGN-E344067 [cTOF-12-D14]">
      <seq>gctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76593" stop="77783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76893" g_stop="77482" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="602"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E344067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76893" e_stop="77482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343507" ref_strand="+" ref_description="SGN-E343507 [cTOF-19-A12]">
      <seq>gctgctcctgctcttgctaagaaaaagtccatagctaagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattctcgctttttttattttatataataatccattttagctgagtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76593" stop="77779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76893" g_stop="77479" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E343507" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76893" e_stop="77479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCT</genome_strand>
        <mrna_strand>GCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTCTCGCTTTTTTTATTTTATATAATAATCCATTTTAGCTGAGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351291" ref_strand="+" ref_description="SGN-E351291 [cTOS-6-D18]">
      <seq>taagccaaaagcagcacaggcaaagaaggccaccaaggcaaagccgaagccaaaaccaaaggttgctgctccaaaggccaaaactgctaccaaatcaaaagctaagccaaagcctgttgttgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttatgctctaattatcttctcttaattattattattattattataccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76628" stop="77821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76928" g_stop="77529" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E351291" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76928" e_stop="77529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAG</genome_strand>
        <mrna_strand>TAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255009" ref_strand="-" ref_description="SGN-E255009 [cLEG-31-A9]">
      <seq>ccaaaggccaaaactgctaccaaatcaaaagttaagccaaagcctgttgttgctgccaaagttaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacattttttaggtcgactccgtcgaggaaagttgcaccgaagccagctgtgaaaaaggcaccggtgaaaagtgtgaaatttaagcccgtgaagtcgccggcaaaaaaagcatccgccaggaaggcaaaaaagtgttcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtggggggtttgaatttgcggcccaatatagaaaatagtattttaaattccagttggaattttggttttttttattttaaaaaaaaatccattttagttgagtttatgctctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76698" stop="81215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76998" g_stop="77482" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="534"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E255009" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255009" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76998" e_stop="77482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTA</genome_strand>
        <mrna_strand>CCAAAGGCCAAAACTGCTACCAAATCAAAAGTTAAGCCAAAGCCTGTTGTTGCTGCCAAAGTTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATTTTTTAGGTCGACTCCGTCGAGGAAAGTTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAAAGTGTGAAATTTAAGCCCGTGAAGTCGCCGGCAAAAAAAGCATCCGCCAGGAAGGCAAAAAAGTGTTCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGGGGTTTGAATTTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGGAATTTTGGTTTTTTTTATTTTAAAAAAAAATCCATTTTAGTTGAGTTTATGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348684" ref_strand="-" ref_description="SGN-E348684 [cTOF-30-N23]">
      <seq>ttttttttttttttttctttttttttttttttagagcataaactcaactaaaatggattattatataaaataaaaaaaacgaaaattacaactggaatttaaaatactattttctatattgggccgcagatacaaaccacccacaaagatccaagaaatttacaatgctacccttcctcctacattcgatcacttctttgccttcctggcggatgctttcttcgccggcgacttcacggtcttagatttcacactcttcaccggtgcctttttcacagctggcttcggtgcagctttcctcgacggagtcgacctagtagatgtccttgctaccttagctggcttctcattagccgcttttggctttacagcagccttagcttttacaggggctttaggctttacagctgctttcggctttgctacaactgccttaggctttgcagctggtttagctttggcagcaacaacaggctttggcttagcttttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81212" stop="76718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78487" g_stop="78465" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78464" i_stop="77491" i_length="974">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77490" g_stop="77018" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="496" r_length="473" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E348684" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348684" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78487" e_stop="78465"/>
          <exon e_start="77490" e_stop="77018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAATTTTTGTTAATATTTTGTAACCTTTAGGCTCCGAACTTCATATTAGTAAGTGTTTAAGTTATGAGGAAATACATATATAAAATAATAAGTAGATTCATTCATATTTAATAGGGCAATGTTCACTTGAAATTCAAGCTTAATTTTTAACTAGATTTTGTCATGTGAATGTTTTATTGATTTCAATGAGGTTATAAATTATATCTGTACTAAGTGTATTATATTTTTTAATCCGCATTAAGTAAATTTGTGAAAATAATGCACACTTAATAAGAGAACATTATTAGAATAATATTTTGCACTATTACTTTTTTGTGAAATTATTAATATAATTATGTTGAATTGTGTAATTTATGTAGAGGTGACAATTAAACGAATTGTGTCAAATTTGAACAAATTATAATGGGTCAAGACAATAATAAGTTAAAATCCAACTCAATTCAATTTTACTTGGGTTAAAAGGGGTCGGGTTAAAAAATGGGTTACAAAATGAATCAAGATCCAAATCAGCTCATTTACTAAGTTTAATTGTTCGTTTAGAAGTTTTTTTGTACCAATAAAAAAATATTTTTTCTTTACTATTGGCTATAAATAATATATCAAACTAGAAAAAAAAAACAATTTATAAAACTTCTGATGAGTTAATTTGAGTTGCAAATCAACACAATTATTAATAGGTTGAGATGGATTGAAATACACAATTATAATTTTTTTTAAGGACACCTTACTGATGTATAATGTCTCGTCCAATTTAGGTTTTGAATTTTCAGTTTAGCCTCTTCAATTTAATTTAGCTCAATTTATTACGTTATCTTTTGAATATAATACACATTTATACTGCGTTTCAATGCGCCGAGAAATTAGATTTTTGTTATAATGTAAAAGTTAAAACCAATTATGTGCATCATAAAAGGAAAATTAACGATGATGCATTTCAGTATTTGACCGACTATACTTTAAAATTGGTATAATAATAATAATAATAATTAAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTCTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242324" ref_strand="+" ref_description="SGN-E242324 [cLEE-3-M20]">
      <seq>tgctgccaaagctaaaccagctgcaaagcctaaggcagttgtagcaaagccgaaagcagctgtaaagcctaaagcccctgtaaaagctaaggctgctgtaaagccaaaagcggctaatgagaagccagctaaggtagcaaggacatctactaggtcgactccgtcgaggaaagctgcaccgaagccagctgtgaaaaaggcaccggtgaagagtgtgaaatctaagaccgtgaagtcgccggcgaagaaagcatccgccaggaaggcaaagaagtgatcgaatgtaggaggaagggtagcattgtaaatttcttggatctttgtgggtggtttgtatctgcggcccaatatagaaaatagtattttaaattccagttgtaattttcgttttttttattttatataataatccattttagttgagtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="+" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76748" stop="77775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77048" g_stop="77474" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="+" ref_id="SGN-E242324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77048" e_stop="77474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTT</genome_strand>
        <mrna_strand>TGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711545" ref_strand="-" ref_description="SGN-E711545 [FB02BB12]">
      <seq>ttttttttttttttttttttcaactaaaatggattattatataaaataaaaaaaacgaaaattacaactggaatttaaaatactattttctatattgggccgcagatacaaaccacccacaaagatccaagaaatttacaatgctacccttcctcctacattcgatcacttctttgccttcctggcggatgctttcttcgccggcgacttcacggtcttagatttcacactcttcaccggtgcctttttcacagctggcttcggtgcagctttcctcgacggagtcgacctagtagatgtccttgctaccttagctggcttctcattagccgcttttgggttacagcagccttagcttttacaggggctttaggctatacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0098L02-x5jA9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0098L02.1" temp_strand="-" temp_description="C06HBa0098L02.1  AC211040.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0098L02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81209" stop="76807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78483" g_stop="78465" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.632"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78464" i_stop="77471" i_length="994">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="77107" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="382" r_length="363" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0098L02.1" gen_strand="-" ref_id="SGN-E711545" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0098L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711545" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78483" e_stop="78465"/>
          <exon e_start="77470" e_stop="77107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTTGTTAATATTTTGTAACCTTTAGGCTCCGAACTTCATATTAGTAAGTGTTTAAGTTATGAGGAAATACATATATAAAATAATAAGTAGATTCATTCATATTTAATAGGGCAATGTTCACTTGAAATTCAAGCTTAATTTTTAACTAGATTTTGTCATGTGAATGTTTTATTGATTTCAATGAGGTTATAAATTATATCTGTACTAAGTGTATTATATTTTTTAATCCGCATTAAGTAAATTTGTGAAAATAATGCACACTTAATAAGAGAACATTATTAGAATAATATTTTGCACTATTACTTTTTTGTGAAATTATTAATATAATTATGTTGAATTGTGTAATTTATGTAGAGGTGACAATTAAACGAATTGTGTCAAATTTGAACAAATTATAATGGGTCAAGACAATAATAAGTTAAAATCCAACTCAATTCAATTTTACTTGGGTTAAAAGGGGTCGGGTTAAAAAATGGGTTACAAAATGAATCAAGATCCAAATCAGCTCATTTACTAAGTTTAATTGTTCGTTTAGAAGTTTTTTTGTACCAATAAAAAAATATTTTTTCTTTACTATTGGCTATAAATAATATATCAAACTAGAAAAAAAAAACAATTTATAAAACTTCTGATGAGTTAATTTGAGTTGCAAATCAACACAATTATTAATAGGTTGAGATGGATTGAAATACACAATTATAATTTTTTTTAAGGACACCTTACTGATGTATAATGTCTCGTCCAATTTAGGTTTTGAATTTTCAGTTTAGCCTCTTCAATTTAATTTAGCTCAATTTATTACGTTATCTTTTGAATATAATACACATTTATACTGCGTTTCAATGCGCCGAGAAATTAGATTTTTGTTATAATGTAAAAGTTAAAACCAATTATGTGCATCATAAAAGGAAAATTAACGATGATGCATTTCAGTATTTGACCGACTATACTTTAAAATTGGTATAATAATAATAATAATAATTAAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGG-GTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTATACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>135</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="863" PGL_stop="8628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="863" e_stop="1040"/>
            <exon e_start="1537" e_stop="2031"/>
            <exon e_start="4421" e_stop="4667"/>
            <exon e_start="5355" e_stop="5503"/>
            <exon e_start="5588" e_stop="5866"/>
            <exon e_start="6057" e_stop="6251"/>
            <exon e_start="7863" e_stop="8272"/>
            <exon e_start="8608" e_stop="8628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="863" e_stop="1040" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1041" i_stop="1536" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1537" e_stop="2031" e_length="495"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2032" i_stop="4420" i_length="2389"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4421" e_stop="4667" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5355" e_stop="5503" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5504" i_stop="5587" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5588" e_stop="5866" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="5867" i_stop="6056" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="6057" e_stop="6251" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="7863" e_stop="8272" e_length="410"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8273" i_stop="8607" i_length="335"/>
          </intron>
          <exon e_serial="8" e_score="0.714">
            <gDNA_exon_boundary e_start="8608" e_stop="8628" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="863" stop="1040"/>
              <exon start="1537" stop="2031"/>
              <exon start="4421" stop="4529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="986" stop="1040"/>
              <exon start="1537" stop="2031"/>
              <exon start="4421" stop="4667"/>
              <exon start="5355" stop="5385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1537" stop="2031"/>
              <exon start="4421" stop="4543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1537" stop="2014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1909" stop="2031"/>
              <exon start="4421" stop="4667"/>
              <exon start="5355" stop="5503"/>
              <exon start="5588" stop="5843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4479" stop="4667"/>
              <exon start="5355" stop="5503"/>
              <exon start="5588" stop="5784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4541" stop="4667"/>
              <exon start="5355" stop="5503"/>
              <exon start="5588" stop="5866"/>
              <exon start="6057" stop="6233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5814" stop="5866"/>
              <exon start="6057" stop="6251"/>
              <exon start="7863" stop="8211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5820" stop="5866"/>
              <exon start="6057" stop="6251"/>
              <exon start="7863" stop="8038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6144" stop="6251"/>
              <exon start="7863" stop="8272"/>
              <exon start="8608" stop="8628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="6251"/>
              <exon start="7863" stop="8249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="6251"/>
              <exon start="7863" stop="8248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="6251"/>
              <exon start="7863" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6209" stop="6251"/>
              <exon start="7863" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6210" stop="6251"/>
              <exon start="7863" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6210" stop="6251"/>
              <exon start="7863" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6223" stop="6251"/>
              <exon start="7863" stop="8226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8016" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8016" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAAGTAGAAGACTGTAATTGTATAGTTTTCATGTCTTTGTTGGCTAAAATATGAATAGAACAAGTGGTAGGTACTAGGGGGAAATTATCCGAAGATGGCCTCAATAAAACCTAGAATTGTTACACTTATGTCCCGCCTTGCTTCCACAGCCTCATTCGATATCTCTTCAATTCAT : CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA : ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG : GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG : AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT : AAGAATAAAAGATAAGAAATC</gDNA_template>
            <first_frame> L  K  V  E  D  C  N  C  I  V  F  M  S  L  L  A  K  I  *  I  E  Q  V  V  G  T  R  G  K  L  S  E  D  G  L  N  K  T  *  N  C  Y  T  Y  V  P  P  C  F  H  S  L  I  R  Y  L  F  N  S   : S  N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : C  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I   : N  A  N  A  K  C  S  C  T  P  E  Y  A  P  A  W  T  *  P  T  L  G  S  T  A  V  *  L  S  H  E  C  W  G  P  W  I  R  S  Q  P  S  V  Y  A  A  T  A  S  I  *  Q  L  F  S  P  S  R  H  A  S  R  *  A  A  S  S  G  S  P  C  L  W  Q  R  C  F  N  G  S  S  W  K  C  T  T  T  T  I  N  S  F  K   : G  H  T  E  H  T  N  P  L  V  I  C  R  C  C  Y  W  G  F  W  F  K  Y  *  L  Y  S  S  G  Q  W  C  N  Y  C  S  T  G  N  E  G  C  S  W  *  D  D  C  *  D  K  W  V  C  I  T  S  P  N  S  T  T  I  S  S   : E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  D  I  :  K  N  K  R  *  E  I </first_frame>
            <second_frame>  *  K  *  K  T  V  I  V  *  F  S  C  L  C  W  L  K  Y  E  *  N  K  W  *  V  L  G  G  N  Y  P  K  M  A  S  I  K  P  R  I  V  T  L  M  S  R  L  A  S  T  A  S  F  D  I  S  S  I  H  :  Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L  :  M  Q  M  P  N  A  H  A  H  Q  N  M  P  P  P  G  P  N  Q  P  W  G  P  P  P  S  S  F  P  M  S  A  G  G  P  G  Y  G  A  N  H  Q  Y  M  P  P  P  R  Q  F  D  N  Y  F  P  R  V  D  M  H  Q  D  K  Q  P  H  Q  G  P  P  V  Y  G  R  D  A  S  M  G  A  H  G  N  A  Q  P  Q  Q  S  I  V  S  K  :  V  T  Q  N  I  Q  I  P  L  S  Y  A  D  A  V  I  G  A  S  G  S  N  I  S  Y  I  R  R  A  S  G  A  T  I  A  V  Q  E  T  R  G  V  P  G  E  M  T  V  E  I  N  G  S  A  S  Q  V  Q  T  A  Q  Q  L  V  Q  :  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E  I  L :   R  I  K  D  K  K   </second_frame>
            <third_frame>   E  S  R  R  L  *  L  Y  S  F  H  V  F  V  G  *  N  M  N  R  T  S  G  R  Y  *  G  E  I  I  R  R  W  P  Q  *  N  L  E  L  L  H  L  C  P  A  L  L  P  Q  P  H  S  I  S  L  Q  F  I :   K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N  * :   C  K  C  Q  M  L  M  H  T  R  I  C  P  R  L  D  L  T  N  L  G  V  H  R  R  L  A  F  P  *  V  L  G  A  L  D  T  E  P  T  I  S  I  C  R  H  R  V  N  L  T  I  I  F  P  E  *  T  C  I  K  I  S  S  L  I  R  V  P  L  F  M  A  E  M  L  Q  W  E  L  M  E  M  H  N  H  N  N  Q  *  F  Q  R :   S  H  R  T  Y  K  S  P  C  H  M  P  M  L  L  L  G  L  L  V  Q  I  L  V  I  F  V  G  P  V  V  Q  L  L  Q  Y  R  K  R  G  V  F  L  V  R  *  L  L  R  *  M  G  L  H  H  K  S  K  Q  H  N  N  *  F  R :   I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E  R  Y   : *  E  *  K  I  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="936" stop="1040"/>
                    <exon start="1537" stop="2031"/>
                    <exon start="4421" stop="4667"/>
                    <exon start="5355" stop="5503"/>
                    <exon start="5588" stop="5866"/>
                    <exon start="6057" stop="6251"/>
                    <exon start="7863" stop="8036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLGGNYPKMASIKPRIVTLMSRLASTASFDISSIHQMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERAVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLMQMPNAHAHQNMPPPGPNQPWGPPPSSFPMSAGGPGYGANHQYMPPPRQFDNYFPRVDMHQDKQPHQGPPVYGRDASMGAHGNAQPQQSIVSKVTQNIQIPLSYADAVIGASGSNISYIRRASGATIAVQETRGVPGEMTVEINGSASQVQTAQQLVQNSIADATSSMQNTAAGPPSQGYNPYPSQGPVYSSSTGHAGHAPSADYGSVYGGSYGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1537" e_stop="2031"/>
            <exon e_start="3062" e_stop="3214"/>
            <exon e_start="4421" e_stop="4667"/>
            <exon e_start="5355" e_stop="5503"/>
            <exon e_start="5588" e_stop="5866"/>
            <exon e_start="6057" e_stop="6251"/>
            <exon e_start="7863" e_stop="8272"/>
            <exon e_start="8608" e_stop="8628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.928"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1537" e_stop="2031" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2032" i_stop="3061" i_length="1030"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="3062" e_stop="3214" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3215" i_stop="4420" i_length="1206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4421" e_stop="4667" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5355" e_stop="5503" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5504" i_stop="5587" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5588" e_stop="5866" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="5867" i_stop="6056" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="6057" e_stop="6251" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6252" i_stop="7862" i_length="1611"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="7863" e_stop="8272" e_length="410"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8273" i_stop="8607" i_length="335"/>
          </intron>
          <exon e_serial="8" e_score="0.714">
            <gDNA_exon_boundary e_start="8608" e_stop="8628" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1537" stop="2031"/>
              <exon start="3062" stop="3200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1537" stop="2031"/>
              <exon start="3062" stop="3154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1537" stop="2014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3141" stop="3214"/>
              <exon start="4421" stop="4667"/>
              <exon start="5355" stop="5503"/>
              <exon start="5588" stop="5866"/>
              <exon start="6057" stop="6219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4479" stop="4667"/>
              <exon start="5355" stop="5503"/>
              <exon start="5588" stop="5784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4541" stop="4667"/>
              <exon start="5355" stop="5503"/>
              <exon start="5588" stop="5866"/>
              <exon start="6057" stop="6233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5814" stop="5866"/>
              <exon start="6057" stop="6251"/>
              <exon start="7863" stop="8211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5820" stop="5866"/>
              <exon start="6057" stop="6251"/>
              <exon start="7863" stop="8038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6144" stop="6251"/>
              <exon start="7863" stop="8272"/>
              <exon start="8608" stop="8628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="6251"/>
              <exon start="7863" stop="8249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="6251"/>
              <exon start="7863" stop="8248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="6251"/>
              <exon start="7863" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6209" stop="6251"/>
              <exon start="7863" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6210" stop="6251"/>
              <exon start="7863" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6210" stop="6251"/>
              <exon start="7863" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6223" stop="6251"/>
              <exon start="7863" stop="8226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8016" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8016" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : GTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATTA : ATGCAAATGCCAAATGCTCATGCACACCAGAATATGCCCCCGCCTGGACCTAACCAACCTTGGGGTCCACCGCCGTCTAGCTTTCCCATGAGTGCTGGGGGCCCTGGATACGGAGCCAACCATCAGTATATGCCGCCACCGCGTCAATTTGACAATTATTTTCCCCGAGTAGACATGCATCAAGATAAGCAGCCTCATCAGGGTCCCCCTGTTTATGGCAGAGATGCTTCAATGGGAGCTCATGGAAATGCACAACCACAACAATCAATAGTTTCAAAG : GTCACACAGAACATACAAATCCCCTTGTCATATGCCGATGCTGTTATTGGGGCTTCTGGTTCAAATATTAGTTATATTCGTCGGGCCAGTGGTGCAACTATTGCAGTACAGGAAACGAGGGGTGTTCCTGGTGAGATGACTGTTGAGATAAATGGGTCTGCATCACAAGTCCAAACAGCACAACAATTAGTTCAG : AATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATT : AAGAATAAAAGATAAGAAATC</gDNA_template>
            <first_frame> Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  V  C  P  Y  K  S  G  L  L  *  K  N  Q  R  S  R  L  L  P  S  T  L  S  I  T  S  A  G  S  P  S  D  N  L  S  K  L  P  Y  L  A  I  N  I  Q  K  I  A  P  C  L  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L  :  M  Q  M  P  N  A  H  A  H  Q  N  M  P  P  P  G  P  N  Q  P  W  G  P  P  P  S  S  F  P  M  S  A  G  G  P  G  Y  G  A  N  H  Q  Y  M  P  P  P  R  Q  F  D  N  Y  F  P  R  V  D  M  H  Q  D  K  Q  P  H  Q  G  P  P  V  Y  G  R  D  A  S  M  G  A  H  G  N  A  Q  P  Q  Q  S  I  V  S  K  :  V  T  Q  N  I  Q  I  P  L  S  Y  A  D  A  V  I  G  A  S  G  S  N  I  S  Y  I  R  R  A  S  G  A  T  I  A  V  Q  E  T  R  G  V  P  G  E  M  T  V  E  I  N  G  S  A  S  Q  V  Q  T  A  Q  Q  L  V  Q  :  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E  I  L :   R  I  K  D  K  K   </first_frame>
            <second_frame>  K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   F  V  H  I  K  V  A  Y  S  R  R  T  K  D  P  D  C  C  H  Q  H  *  A  L  Q  V  L  E  V  L  L  T  I  C  Q  N  Y  L  I  W  P  S  I  S  R  R  L  H  R  V  W :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N  * :   C  K  C  Q  M  L  M  H  T  R  I  C  P  R  L  D  L  T  N  L  G  V  H  R  R  L  A  F  P  *  V  L  G  A  L  D  T  E  P  T  I  S  I  C  R  H  R  V  N  L  T  I  I  F  P  E  *  T  C  I  K  I  S  S  L  I  R  V  P  L  F  M  A  E  M  L  Q  W  E  L  M  E  M  H  N  H  N  N  Q  *  F  Q  R :   S  H  R  T  Y  K  S  P  C  H  M  P  M  L  L  L  G  L  L  V  Q  I  L  V  I  F  V  G  P  V  V  Q  L  L  Q  Y  R  K  R  G  V  F  L  V  R  *  L  L  R  *  M  G  L  H  H  K  S  K  Q  H  N  N  *  F  R :   I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E  R  Y   : *  E  *  K  I  R  N  </second_frame>
            <third_frame>   N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : C  L  S  I  *  K  W  L  T  L  E  E  P  K  I  Q  T  A  A  I  N  I  E  H  Y  K  C  W  K  S  F  *  Q  S  V  K  I  T  L  S  G  H  Q  Y  P  E  D  C  T  V  S   : G  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I   : N  A  N  A  K  C  S  C  T  P  E  Y  A  P  A  W  T  *  P  T  L  G  S  T  A  V  *  L  S  H  E  C  W  G  P  W  I  R  S  Q  P  S  V  Y  A  A  T  A  S  I  *  Q  L  F  S  P  S  R  H  A  S  R  *  A  A  S  S  G  S  P  C  L  W  Q  R  C  F  N  G  S  S  W  K  C  T  T  T  T  I  N  S  F  K   : G  H  T  E  H  T  N  P  L  V  I  C  R  C  C  Y  W  G  F  W  F  K  Y  *  L  Y  S  S  G  Q  W  C  N  Y  C  S  T  G  N  E  G  C  S  W  *  D  D  C  *  D  K  W  V  C  I  T  S  P  N  S  T  T  I  S  S   : E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  D  I  :  K  N  K  R  *  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3092" stop="3214"/>
                    <exon start="4421" stop="4667"/>
                    <exon start="5355" stop="5503"/>
                    <exon start="5588" stop="5866"/>
                    <exon start="6057" stop="6251"/>
                    <exon start="7863" stop="8036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQRSRLLPSTLSITSAGSPSDNLSKLPYLAINIQKIAPCLVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLMQMPNAHAHQNMPPPGPNQPWGPPPSSFPMSAGGPGYGANHQYMPPPRQFDNYFPRVDMHQDKQPHQGPPVYGRDASMGAHGNAQPQQSIVSKVTQNIQIPLSYADAVIGASGSNISYIRRASGATIAVQETRGVPGEMTVEINGSASQVQTAQQLVQNSIADATSSMQNTAAGPPSQGYNPYPSQGPVYSSSTGHAGHAPSADYGSVYGGSYGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1537" stop="2031"/>
                    <exon start="3062" stop="3091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERAVCPYKSGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7790" e_stop="8274"/>
            <exon e_start="8611" e_stop="8626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="7790" e_stop="8274" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8275" i_stop="8610" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="8611" e_stop="8626" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7790" stop="8274"/>
              <exon start="8611" stop="8626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8016" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8016" stop="8245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCGTCTGTCTTACTACTGAGATGTCTAGATGCATGTTAATTCTGACTACCCTTATTTCTTATGTTGCAGAATTCAATCGCTGATGCTACCAGCTCAATGCAGAACACTGCAGCTGGACCACCTTCCCAAGGTTATAATCCCTACCCTTCTCAGGGTCCTGTGTACTCTTCATCCACTGGTCACGCTGGTCATGCGCCATCTGCAGATTATGGTTCTGTTTATGGAGGTAGCTACGGTTATTAAAGGATATCCCGTTCAAACCAGCACTAGAACTACGAGTCTTCAGCTGTTGGGAAATTTTAGCTCTTTAGTAAAGCTGTATCATGATTTCTAGTAGTTGAGAAGTGAATCTGATTTGCCCTGTTTAGTTTCTTGTCTTCTGCATTCTCAACTGTCTCTATCACATCTTTTATTTTTACCAATATAACTAGTGAAATCAAATTGGAAAACTAATGCTATTTTTCTGCAAGAGAGATATTGT : AATAAAAGATAAGAAA</gDNA_template>
            <first_frame> N  S  V  C  L  T  T  E  M  S  R  C  M  L  I  L  T  T  L  I  S  Y  V  A  E  F  N  R  *  C  Y  Q  L  N  A  E  H  C  S  W  T  T  F  P  R  L  *  S  L  P  F  S  G  S  C  V  L  F  I  H  W  S  R  W  S  C  A  I  C  R  L  W  F  C  L  W  R  *  L  R  L  L  K  D  I  P  F  K  P  A  L  E  L  R  V  F  S  C  W  E  I  L  A  L  *  *  S  C  I  M  I  S  S  S  *  E  V  N  L  I  C  P  V  *  F  L  V  F  C  I  L  N  C  L  Y  H  I  F  Y  F  Y  Q  Y  N  *  *  N  Q  I  G  K  L  M  L  F  F  C  K  R  D  I  V :   I  K  D  K  K </first_frame>
            <second_frame>  I  P  S  V  L  L  L  R  C  L  D  A  C  *  F  *  L  P  L  F  L  M  L  Q  N  S  I  A  D  A  T  S  S  M  Q  N  T  A  A  G  P  P  S  Q  G  Y  N  P  Y  P  S  Q  G  P  V  Y  S  S  S  T  G  H  A  G  H  A  P  S  A  D  Y  G  S  V  Y  G  G  S  Y  G  Y  *  R  I  S  R  S  N  Q  H  *  N  Y  E  S  S  A  V  G  K  F  *  L  F  S  K  A  V  S  *  F  L  V  V  E  K  *  I  *  F  A  L  F  S  F  L  S  S  A  F  S  T  V  S  I  T  S  F  I  F  T  N  I  T  S  E  I  K  L  E  N  *  C  Y  F  S  A  R  E  I  L   : *  *  K  I  R   </second_frame>
            <third_frame>   F  R  L  S  Y  Y  *  D  V  *  M  H  V  N  S  D  Y  P  Y  F  L  C  C  R  I  Q  S  L  M  L  P  A  Q  C  R  T  L  Q  L  D  H  L  P  K  V  I  I  P  T  L  L  R  V  L  C  T  L  H  P  L  V  T  L  V  M  R  H  L  Q  I  M  V  L  F  M  E  V  A  T  V  I  K  G  Y  P  V  Q  T  S  T  R  T  T  S  L  Q  L  L  G  N  F  S  S  L  V  K  L  Y  H  D  F  *  *  L  R  S  E  S  D  L  P  C  L  V  S  C  L  L  H  S  Q  L  S  L  S  H  L  L  F  L  P  I  *  L  V  K  S  N  W  K  T  N  A  I  F  L  Q  E  R  Y  C  :  N  K  R  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7822" stop="8127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHVNSDYPYFLCCRIQSLMLPAQCRTLQLDHLPKVIIPTLLRVLCTLHPLVTLVMRHLQIMVLFMEVATVIKGYPVQTSTRTTSLQLLGNFSSLVKLYHDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="1537" e_stop="2031"/>
            <exon e_start="3053" e_stop="3214"/>
            <exon e_start="4421" e_stop="4667"/>
            <exon e_start="5355" e_stop="5502"/>
            <exon e_start="5588" e_stop="5595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.918"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="1537" e_stop="2031" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2032" i_stop="3052" i_length="1021"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3053" e_stop="3214" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3215" i_stop="4420" i_length="1206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4421" e_stop="4667" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="4668" i_stop="5354" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="5355" e_stop="5502" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5503" i_stop="5587" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5588" e_stop="5595" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1537" stop="2014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1831" stop="2031"/>
              <exon start="3053" stop="3214"/>
              <exon start="4421" stop="4667"/>
              <exon start="5355" stop="5502"/>
              <exon start="5588" stop="5595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGGCAGAAGAAAGCTACCAGGAACATGACCTTGGTAATGTCTACAACGCAGAGAATGTGCACAGCGCAGCGGATGGACATACGGGGGAAGTGGACAATGCACATACCCTGGAAAACATTCAGGAAATGGACAATGCACATGAGAACTTGCTTCCAGAAGAGGTAAAATTGGAACCAGAGGAGGTACAAGTTGCGTTTCTTCAGGAACATCCAGTAAAACTGGAACAAGAGGAGGCACAAGTTGAGTCCCTTCAGGAACATGTGATAAAATCGGAACCAGAAGAGATGCAAGTTGCTGAAAACGGTTCAGGTGGTGGTGAGGAAAAAAGATGGCCTGGTTGGCCCGGAGAAAATGTTTTCAGGATGTTAGTTCCTTCTCAGAAGGTTGGTGGTATTATTGGTCGCAAAGGAGAGTATATTAAAAAGACATGTGAAGAGACAAAAGCTCGCATTAAGGTCCTTGATGGTCCTCATGGTACTAAAGAAAGAGCT : TGTGTGCAGGTTTGTCCATATAAAAGTGGCTTACTCTAGAAGAACCAAAGATCCAGACTGCTGCCATCAACATTGAGCATTACAAGTGCTGGAAGTCCTTCTGACAATCTGTCAAAATTACCTTATCTGGCCATCAATATCCAGAAGATTGCACCGTGTCTG : GTGATGATATCTGCGAGAGAAGAGCCTAACCTCTCCATTCCGCCTGCTATGGATGGACTTTTAAAGGTCCATAAGCGGATAATTGATGTGGATTATGACTCCAATGCTCCTGGTGGTGCTGGGAAACCAGCTTCGACTAGACTACTTGTTGCTGCTACACAGGCTGCAATCCTGATTGGAAAGCAAGGTGCAACTGTTAAGTCTATTCAAGATGAATCTCATTGCACTATTCGAGTACTTGGAGGAG : AGCATCTCCCTGTTTTTGCCCTGCCTGATGATAGTATTGTTGAGATACAAGGAGAGCCAGCAGGCGTGCATAAAGCAGTTGAAATGATTGCAGGTCATCTAAGGAAATTTTTAGTAGATCGCAGTGTAATTGGATTATTTGAGAAATT : ATGCAAAT</gDNA_template>
            <first_frame> Q  M  A  E  E  S  Y  Q  E  H  D  L  G  N  V  Y  N  A  E  N  V  H  S  A  A  D  G  H  T  G  E  V  D  N  A  H  T  L  E  N  I  Q  E  M  D  N  A  H  E  N  L  L  P  E  E  V  K  L  E  P  E  E  V  Q  V  A  F  L  Q  E  H  P  V  K  L  E  Q  E  E  A  Q  V  E  S  L  Q  E  H  V  I  K  S  E  P  E  E  M  Q  V  A  E  N  G  S  G  G  G  E  E  K  R  W  P  G  W  P  G  E  N  V  F  R  M  L  V  P  S  Q  K  V  G  G  I  I  G  R  K  G  E  Y  I  K  K  T  C  E  E  T  K  A  R  I  K  V  L  D  G  P  H  G  T  K  E  R  A  :  C  V  Q  V  C  P  Y  K  S  G  L  L  *  K  N  Q  R  S  R  L  L  P  S  T  L  S  I  T  S  A  G  S  P  S  D  N  L  S  K  L  P  Y  L  A  I  N  I  Q  K  I  A  P  C  L  :  V  M  I  S  A  R  E  E  P  N  L  S  I  P  P  A  M  D  G  L  L  K  V  H  K  R  I  I  D  V  D  Y  D  S  N  A  P  G  G  A  G  K  P  A  S  T  R  L  L  V  A  A  T  Q  A  A  I  L  I  G  K  Q  G  A  T  V  K  S  I  Q  D  E  S  H  C  T  I  R  V  L  G  G   : E  H  L  P  V  F  A  L  P  D  D  S  I  V  E  I  Q  G  E  P  A  G  V  H  K  A  V  E  M  I  A  G  H  L  R  K  F  L  V  D  R  S  V  I  G  L  F  E  K  L :   C  K  </first_frame>
            <second_frame>  K  W  Q  K  K  A  T  R  N  M  T  L  V  M  S  T  T  Q  R  M  C  T  A  Q  R  M  D  I  R  G  K  W  T  M  H  I  P  W  K  T  F  R  K  W  T  M  H  M  R  T  C  F  Q  K  R  *  N  W  N  Q  R  R  Y  K  L  R  F  F  R  N  I  Q  *  N  W  N  K  R  R  H  K  L  S  P  F  R  N  M  *  *  N  R  N  Q  K  R  C  K  L  L  K  T  V  Q  V  V  V  R  K  K  D  G  L  V  G  P  E  K  M  F  S  G  C  *  F  L  L  R  R  L  V  V  L  L  V  A  K  E  S  I  L  K  R  H  V  K  R  Q  K  L  A  L  R  S  L  M  V  L  M  V  L  K  K  E  L :   V  C  R  F  V  H  I  K  V  A  Y  S  R  R  T  K  D  P  D  C  C  H  Q  H  *  A  L  Q  V  L  E  V  L  L  T  I  C  Q  N  Y  L  I  W  P  S  I  S  R  R  L  H  R  V  W :   *  *  Y  L  R  E  K  S  L  T  S  P  F  R  L  L  W  M  D  F  *  R  S  I  S  G  *  L  M  W  I  M  T  P  M  L  L  V  V  L  G  N  Q  L  R  L  D  Y  L  L  L  L  H  R  L  Q  S  *  L  E  S  K  V  Q  L  L  S  L  F  K  M  N  L  I  A  L  F  E  Y  L  E  E  :  S  I  S  L  F  L  P  C  L  M  I  V  L  L  R  Y  K  E  S  Q  Q  A  C  I  K  Q  L  K  *  L  Q  V  I  *  G  N  F  *  *  I  A  V  *  L  D  Y  L  R  N   : Y  A  N </second_frame>
            <third_frame>   N  G  R  R  K  L  P  G  T  *  P  W  *  C  L  Q  R  R  E  C  A  Q  R  S  G  W  T  Y  G  G  S  G  Q  C  T  Y  P  G  K  H  S  G  N  G  Q  C  T  *  E  L  A  S  R  R  G  K  I  G  T  R  G  G  T  S  C  V  S  S  G  T  S  S  K  T  G  T  R  G  G  T  S  *  V  P  S  G  T  C  D  K  I  G  T  R  R  D  A  S  C  *  K  R  F  R  W  W  *  G  K  K  M  A  W  L  A  R  R  K  C  F  Q  D  V  S  S  F  S  E  G  W  W  Y  Y  W  S  Q  R  R  V  Y  *  K  D  M  *  R  D  K  S  S  H  *  G  P  *  W  S  S  W  Y  *  R  K  S   : L  C  A  G  L  S  I  *  K  W  L  T  L  E  E  P  K  I  Q  T  A  A  I  N  I  E  H  Y  K  C  W  K  S  F  *  Q  S  V  K  I  T  L  S  G  H  Q  Y  P  E  D  C  T  V  S   : G  D  D  I  C  E  R  R  A  *  P  L  H  S  A  C  Y  G  W  T  F  K  G  P  *  A  D  N  *  C  G  L  *  L  Q  C  S  W  W  C  W  E  T  S  F  D  *  T  T  C  C  C  Y  T  G  C  N  P  D  W  K  A  R  C  N  C  *  V  Y  S  R  *  I  S  L  H  Y  S  S  T  W  R  R :   A  S  P  C  F  C  P  A  *  *  *  Y  C  *  D  T  R  R  A  S  R  R  A  *  S  S  *  N  D  C  R  S  S  K  E  I  F  S  R  S  Q  C  N  W  I  I  *  E  I  :  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1537" stop="2031"/>
                    <exon start="3053" stop="3091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMAEESYQEHDLGNVYNAENVHSAADGHTGEVDNAHTLENIQEMDNAHENLLPEEVKLEPEEVQVAFLQEHPVKLEQEEAQVESLQEHVIKSEPEEMQVAENGSGGGEEKRWPGWPGENVFRMLVPSQKVGGIIGRKGEYIKKTCEETKARIKVLDGPHGTKERACVQVCPYKSGLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3092" stop="3214"/>
                    <exon start="4421" stop="4667"/>
                    <exon start="5355" stop="5502"/>
                    <exon start="5588" stop="5594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQRSRLLPSTLSITSAGSPSDNLSKLPYLAINIQKIAPCLVMISAREEPNLSIPPAMDGLLKVHKRIIDVDYDSNAPGGAGKPASTRLLVAATQAAILIGKQGATVKSIQDESHCTIRVLGGEHLPVFALPDDSIVEIQGEPAGVHKAVEMIAGHLRKFLVDRSVIGLFEKLCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10451" PGL_stop="8027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10451" e_stop="10434"/>
            <exon e_start="9594" e_stop="9469"/>
            <exon e_start="9172" e_stop="8583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.734" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10451" e_stop="10434" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.734" acc_prob="0.798">
            <gDNA_intron_boundary i_start="10433" i_stop="9595" i_length="839"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9594" e_stop="9469" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9468" i_stop="9173" i_length="296"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="9172" e_stop="8583" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10451" stop="10434"/>
              <exon start="9594" stop="9469"/>
              <exon start="9172" stop="8583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAGGTTAATGTTCCG : ATACTGGGAATTTTGGAGAATATGAGCTACTTTAAATGCCCAAAATGCAATGAATCGTCCTTTATCTTTGGTCAAGGAGGAGCTAGGAAAACAGCTGAGGAGATGGGTCTGAAATTTCTTGGTGAG : ATACCACTTGAAGTGGAGATCAGAAGCGGTTCCGACGAAGGTGTTCCCATTGTTATGTCAAACCCTGATTCTGTAATCTCTCAAGTATATGGCAATGTGGCTGAAAAAGTTGTCATGAGGCTTGAAGAGGTAGATAAGGAGCAACACTTCAGGCCAGATGTATCTCTTTAAATGCGTTGATCAAGCTCTCCACCAACTTGAGTGTAGTAGTAACTACTAGAATCCAACCCTTCTAACAAAATCAGAGAAAAATCTAGTTGGCTCTGGATATAGAGTTAAAGGAAGTCCATTATCAGGAGAAGTTGTGACGCCGATGTGCTTGCTGGGAGGGAGCAATCTTGTTGACTTACTGAGTTATCACTCAACAATTAACACTAACTGAAAGTTGCAGGAATAATGATGTATCCTTTTAGCTAATTGAACCCATCTTTTCAACATGAAAAGATAATATTTACAAATGATGAACATAGCGTGGATTGAGAAGGTTTAGTCATTCTCATCTTTCTAGGAAAAAAAGGAGAAATCAAAGATTTTTCATGTATTGGATTTCTTATCTTTTATTCTTCCAAATTTGGATGCTGCTTGTATTT</gDNA_template>
            <first_frame> S  K  V  N  V  P  :  I  L  G  I  L  E  N  M  S  Y  F  K  C  P  K  C  N  E  S  S  F  I  F  G  Q  G  G  A  R  K  T  A  E  E  M  G  L  K  F  L  G  E  :  I  P  L  E  V  E  I  R  S  G  S  D  E  G  V  P  I  V  M  S  N  P  D  S  V  I  S  Q  V  Y  G  N  V  A  E  K  V  V  M  R  L  E  E  V  D  K  E  Q  H  F  R  P  D  V  S  L  *  M  R  *  S  S  S  P  P  T  *  V  *  *  *  L  L  E  S  N  P  S  N  K  I  R  E  K  S  S  W  L  W  I  *  S  *  R  K  S  I  I  R  R  S  C  D  A  D  V  L  A  G  R  E  Q  S  C  *  L  T  E  L  S  L  N  N  *  H  *  L  K  V  A  G  I  M  M  Y  P  F  S  *  L  N  P  S  F  Q  H  E  K  I  I  F  T  N  D  E  H  S  V  D  *  E  G  L  V  I  L  I  F  L  G  K  K  G  E  I  K  D  F  S  C  I  G  F  L  I  F  Y  S  S  K  F  G  C  C  L  Y   </first_frame>
            <second_frame>  P  R  L  M  F  R :   Y  W  E  F  W  R  I  *  A  T  L  N  A  Q  N  A  M  N  R  P  L  S  L  V  K  E  E  L  G  K  Q  L  R  R  W  V  *  N  F  L  V  R :   Y  H  L  K  W  R  S  E  A  V  P  T  K  V  F  P  L  L  C  Q  T  L  I  L  *  S  L  K  Y  M  A  M  W  L  K  K  L  S  *  G  L  K  R  *  I  R  S  N  T  S  G  Q  M  Y  L  F  K  C  V  D  Q  A  L  H  Q  L  E  C  S  S  N  Y  *  N  P  T  L  L  T  K  S  E  K  N  L  V  G  S  G  Y  R  V  K  G  S  P  L  S  G  E  V  V  T  P  M  C  L  L  G  G  S  N  L  V  D  L  L  S  Y  H  S  T  I  N  T  N  *  K  L  Q  E  *  *  C  I  L  L  A  N  *  T  H  L  F  N  M  K  R  *  Y  L  Q  M  M  N  I  A  W  I  E  K  V  *  S  F  S  S  F  *  E  K  K  E  K  S  K  I  F  H  V  L  D  F  L  S  F  I  L  P  N  L  D  A  A  C  I  </second_frame>
            <third_frame>   Q  G  *  C  S   : D  T  G  N  F  G  E  Y  E  L  L  *  M  P  K  M  Q  *  I  V  L  Y  L  W  S  R  R  S  *  E  N  S  *  G  D  G  S  E  I  S  W  *   : D  T  T  *  S  G  D  Q  K  R  F  R  R  R  C  S  H  C  Y  V  K  P  *  F  C  N  L  S  S  I  W  Q  C  G  *  K  S  C  H  E  A  *  R  G  R  *  G  A  T  L  Q  A  R  C  I  S  L  N  A  L  I  K  L  S  T  N  L  S  V  V  V  T  T  R  I  Q  P  F  *  Q  N  Q  R  K  I  *  L  A  L  D  I  E  L  K  E  V  H  Y  Q  E  K  L  *  R  R  C  A  C  W  E  G  A  I  L  L  T  Y  *  V  I  T  Q  Q  L  T  L  T  E  S  C  R  N  N  D  V  S  F  *  L  I  E  P  I  F  S  T  *  K  D  N  I  Y  K  *  *  T  *  R  G  L  R  R  F  S  H  S  H  L  S  R  K  K  R  R  N  Q  R  F  F  M  Y  W  I  S  Y  L  L  F  F  Q  I  W  M  L  L  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10451" stop="10434"/>
                    <exon start="9594" stop="9469"/>
                    <exon start="9172" stop="9002"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKVNVPILGILENMSYFKCPKCNESSFIFGQGGARKTAEEMGLKFLGEIPLEVEIRSGSDEGVPIVMSNPDSVISQVYGNVAEKVVMRLEEVDKEQHFRPDVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9321" e_stop="9300"/>
            <exon e_start="8268" e_stop="8027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.000" e_score="0.682"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.682">
            <gDNA_exon_boundary e_start="9321" e_stop="9300" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9299" i_stop="8269" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="8268" e_stop="8027" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9321" stop="9300"/>
              <exon start="8268" stop="8027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232242" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTGTTTCCCTTTTTTGTG : TCTCTCTTGCAGAAAAATAGCATTAGTTTTCCAATTTGATTTCACTAGTTATATTGGTAAAAATAAAAGATGTGATAGAGACAGTTGAGAATGCAGAAGACAAGAAACTAAACAGGGCAAATCAGATTCACTTCTCAACTACTAGAAATCATGATACAGCTTTACTAAAGAGCTAAAATTTCCCAACAGCTGAAGACTCGTAGTTCTAGTGCTGGTTTGAACGGGATATCCTTTAATAACCG</gDNA_template>
            <first_frame> F  F  V  S  L  F  C   : V  S  L  A  E  K  *  H  *  F  S  N  L  I  S  L  V  I  L  V  K  I  K  D  V  I  E  T  V  E  N  A  E  D  K  K  L  N  R  A  N  Q  I  H  F  S  T  T  R  N  H  D  T  A  L  L  K  S  *  N  F  P  T  A  E  D  S  *  F  *  C  W  F  E  R  D  I  L  *  *  P </first_frame>
            <second_frame>  S  L  F  P  F  F  V  :  S  L  L  Q  K  N  S  I  S  F  P  I  *  F  H  *  L  Y  W  *  K  *  K  M  *  *  R  Q  L  R  M  Q  K  T  R  N  *  T  G  Q  I  R  F  T  S  Q  L  L  E  I  M  I  Q  L  Y  *  R  A  K  I  S  Q  Q  L  K  T  R  S  S  S  A  G  L  N  G  I  S  F  N  N   </second_frame>
            <third_frame>   L  C  F  P  F  L  C :   L  S  C  R  K  I  A  L  V  F  Q  F  D  F  T  S  Y  I  G  K  N  K  R  C  D  R  D  S  *  E  C  R  R  Q  E  T  K  Q  G  K  S  D  S  L  L  N  Y  *  K  S  *  Y  S  F  T  K  E  L  K  F  P  N  S  *  R  L  V  V  L  V  L  V  *  T  G  Y  P  L  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0098L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15396" PGL_stop="16821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15396" e_stop="16519"/>
            <exon e_start="16794" e_stop="16821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.679"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15396" e_stop="16519" e_length="1124"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16520" i_stop="16793" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="0.679">
            <gDNA_exon_boundary e_start="16794" e_stop="16821" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15396" stop="16195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15397" stop="15574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15758" stop="16519"/>
              <exon start="16794" stop="16821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16214" stop="16415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATGGTATCTGCTTTTAGAATTAGAATGAAAACCTGCAGCTGCTCAACATGAAGTCAATCATGCTATGTATGTTGTTTGTAGTTGATGCAAGTTAGTTCTTGTTTACTGGTGATTCTTATGTGAGTGGTCAGACTATCATACTTCCGTCTAGTATTTACGTATGAACGTCGCATAATGTTTTGAGAGTTTATATT : AAAAAAAAAAAAACAATGGTAAGAATTG</gDNA_template>
            <first_frame> Q  I  Q  R  Y  L  V  G  N  S  V  *  V  A  L  S  Q  V  P  S  A  *  I  F  L  R  R  W  K  K  S  *  V  L  L  Q  I  R  T  K  Y  K  Q  R  *  V  V  L  R  F  M  G  T  H  Q  T  G  I  E  V  M  K  V  K  G  N  F  T  R  K  N  *  M  N  G  N  Q  E  R  G  A  E  S  L  P  M  G  G  K  K  H  *  I  M  L  K  Q  R  G  K  G  V  R  S  *  T  R  G  F  M  L  *  E  Q  L  F  R  I  S  Q  R  W  I  K  H  R  C  L  E  M  Q  L  L  I  S  Q  I  S  R  Q  E  L  G  F  *  M  L  R  R  R  W  *  A  T  S  K  S  S  R  L  S  W  R  L  I  F  I  K  D  K  M  M  Q  L  *  E  *  A  A  L  *  M  L  T  L  F  L  E  F  *  R  H  F  R  N  I  K  W  W  H  K  N  P  M  S  H  *  Q  K  T  A  N  L  Y  T  C  S  L  Y  E  L  L  A  L  L  L  R  I  *  R  K  S  *  Q  L  L  C  L  N  D  L  D  V  Q  R  I  R  S  N  H  A  M  Y  V  D  C  S  *  M  L  A  V  L  L  *  R  P  G  G  Q  Y  Q  *  S  D  C  Y  A  L  L  D  Y  S  C  M  S  I  N  V  *  L  V  S  L  H  Y  I  L  L  T  I  Q  S  K  C  K  F  W  P  R  M  V  S  A  F  R  I  R  M  K  T  C  S  C  S  T  *  S  Q  S  C  Y  V  C  C  L  *  L  M  Q  V  S  S  C  L  L  V  I  L  M  *  V  V  R  L  S  Y  F  R  L  V  F  T  Y  E  R  R  I  M  F  *  E  F  I  L :   K  K  K  K  Q  W  *  E  L </first_frame>
            <second_frame>  K  Y  K  D  I  W  S  G  T  Q  S  R  W  R  *  V  R  S  H  Q  H  K  F  F  S  E  G  G  R  R  A  E  F  C  F  R  F  V  R  S  T  S  S  A  R  *  F  S  G  L  W  E  L  I  K  R  V  S  K  *  *  R  *  R  E  T  L  Q  G  R  I  R  *  T  E  T  K  K  E  G  Q  K  A  C  Q  W  E  G  R  S  I  E  S  C  *  S  R  E  A  K  A  *  E  A  K  P  E  V  L  C  F  K  S  S  C  S  E  Y  L  K  D  G  *  S  I  A  A  W  R  C  N  C  L  Y  H  R  S  P  G  K  N  *  G  F  R  C  *  E  G  D  G  R  R  Q  A  K  A  A  G  Y  P  G  D  *  F  S  S  K  T  R  *  C  S  C  K  S  R  L  P  F  E  C  S  P  C  F  *  S  F  E  D  I  S  G  T  S  S  G  G  T  R  I  Q  C  L  I  N  R  K  R  R  T  C  T  H  V  L  Y  T  S  S  W  P  C  C  *  G  F  E  G  K  A  D  S  C  S  V  *  M  I  *  M  F  R  E  *  G  L  I  M  Q  C  M  L  T  V  V  K  C  *  P  F  C  F  K  D  P  V  V  S  I  S  D  Q  I  V  M  L  C  S  I  I  R  V  *  A  S  M  S  S  W  *  V  C  I  I  F  C  *  L  Y  N  L  N  V  S  F  G  R  E  W  Y  L  L  L  E  L  E  *  K  P  A  A  A  Q  H  E  V  N  H  A  M  Y  V  V  C  S  *  C  K  L  V  L  V  Y  W  *  F  L  C  E  W  S  D  Y  H  T  S  V  *  Y  L  R  M  N  V  A  *  C  F  E  S  L  Y   : *  K  K  K  N  N  G  K  N   </second_frame>
            <third_frame>   N  T  K  I  F  G  R  E  L  S  L  G  G  A  K  S  G  P  I  S  I  N  F  S  P  K  V  E  E  E  L  S  F  A  S  D  S  Y  E  V  Q  A  A  L  G  S  S  Q  V  Y  G  N  S  S  N  G  Y  R  S  D  E  G  E  G  K  L  Y  K  E  E  L  D  E  R  K  P  R  K  R  G  R  K  P  A  N  G  R  E  E  A  L  N  H  V  E  A  E  R  Q  R  R  E  K  L  N  Q  R  F  Y  A  L  R  A  V  V  P  N  I  S  K  M  D  K  A  S  L  L  G  D  A  I  A  Y  I  T  D  L  Q  A  R  I  R  V  L  D  A  E  K  E  M  V  G  D  K  Q  K  Q  Q  V  I  L  E  I  D  F  H  Q  R  Q  D  D  A  V  V  R  V  G  C  P  L  N  A  H  P  V  S  R  V  L  K  T  F  Q  E  H  Q  V  V  A  Q  E  S  N  V  S  L  T  E  N  G  E  L  V  H  M  F  S  I  R  A  P  G  P  A  A  E  D  L  K  E  K  L  T  A  A  L  S  K  *  F  R  C  S  E  N  K  V  *  S  C  N  V  C  *  L  *  L  N  A  S  R  F  A  L  K  T  R  W  S  V  S  V  I  R  L  L  C  F  A  R  L  F  V  Y  E  H  Q  C  L  A  G  K  F  A  L  Y  F  V  D  Y  T  I  *  M  *  V  L  A  E  N  G  I  C  F  *  N  *  N  E  N  L  Q  L  L  N  M  K  S  I  M  L  C  M  L  F  V  V  D  A  S  *  F  L  F  T  G  D  S  Y  V  S  G  Q  T  I  I  L  P  S  S  I  Y  V  *  T  S  H  N  V  L  R  V  Y  I  :  K  K  K  K  T  M  V  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15398" stop="16114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKIFGRELSLGGAKSGPISINFSPKVEEELSFASDSYEVQAALGSSQVYGNSSNGYRSDEGEGKLYKEELDERKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQARIRVLDAEKEMVGDKQKQQVILEIDFHQRQDDAVVRVGCPLNAHPVSRVLKTFQEHQVVAQESNVSLTENGELVHMFSIRAPGPAAEDLKEKLTAALSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15396" e_stop="16328"/>
            <exon e_start="16794" e_stop="16810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.882"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15396" e_stop="16328" e_length="933"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16329" i_stop="16793" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="16794" e_stop="16810" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15396" stop="16195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15397" stop="15574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15834" stop="16328"/>
              <exon start="16794" stop="16810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATACAAAGATATTTGGTCGGGAACTCAGTCTAGGTGGCGCTAAGTCAGGTCCCATCAGCATAAATTTTTCTCCGAAGGTGGAAGAAGAGCTGAGTTTTGCTTCAGATTCGTACGAAGTACAAGCAGCGCTAGGTAGTTCTCAGGTTTATGGGAACTCATCAAACGGGTATCGAAGTGATGAAGGTGAAGGGAAACTTTACAAGGAAGAATTAGATGAACGGAAACCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTTTTATGCTTTAAGAGCAGTTGTTCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATATCACAGATCTCCAGGCAAGAATTAGGGTTTTAGATGCTGAGAAGGAGATGGTAGGCGACAAGCAAAAGCAGCAGGTTATCCTGGAGATTGATTTTCATCAAAGACAAGATGATGCAGTTGTAAGAGTAGGCTGCCCTTTGAATGCTCACCCTGTTTCTAGAGTTTTGAAGACATTTCAGGAACATCAAGTGGTGGCACAAGAATCCAATGTCTCATTAACAGAAAACGGCGAACTTGTACACATGTTCTCTATACGAGCTCCTGGCCCTGCTGCTGAGGATTTGAAGGAAAAGCTGACAGCTGCTCTGTCTAAATGATTTAGATGTTCAGAGAATAAGGTCTAATCATGCAATGTATGTTGACTGTAGTTAAATGCTAGCCGTTTTGCTTTAAAGACCCGGTGGTCAGTATCAGTGATCAGATTGTTATGCTTTGCTCGATTATTCGTGTATGAGCATCAATGTCTAGCTGGTAAGTTTGCATTATATTTTGTTGACTATACAATCTAAATGTAAGTTTTGGCCGAGAATG : AAAAAAAAAAAAACAAT</gDNA_template>
            <first_frame> Q  I  Q  R  Y  L  V  G  N  S  V  *  V  A  L  S  Q  V  P  S  A  *  I  F  L  R  R  W  K  K  S  *  V  L  L  Q  I  R  T  K  Y  K  Q  R  *  V  V  L  R  F  M  G  T  H  Q  T  G  I  E  V  M  K  V  K  G  N  F  T  R  K  N  *  M  N  G  N  Q  E  R  G  A  E  S  L  P  M  G  G  K  K  H  *  I  M  L  K  Q  R  G  K  G  V  R  S  *  T  R  G  F  M  L  *  E  Q  L  F  R  I  S  Q  R  W  I  K  H  R  C  L  E  M  Q  L  L  I  S  Q  I  S  R  Q  E  L  G  F  *  M  L  R  R  R  W  *  A  T  S  K  S  S  R  L  S  W  R  L  I  F  I  K  D  K  M  M  Q  L  *  E  *  A  A  L  *  M  L  T  L  F  L  E  F  *  R  H  F  R  N  I  K  W  W  H  K  N  P  M  S  H  *  Q  K  T  A  N  L  Y  T  C  S  L  Y  E  L  L  A  L  L  L  R  I  *  R  K  S  *  Q  L  L  C  L  N  D  L  D  V  Q  R  I  R  S  N  H  A  M  Y  V  D  C  S  *  M  L  A  V  L  L  *  R  P  G  G  Q  Y  Q  *  S  D  C  Y  A  L  L  D  Y  S  C  M  S  I  N  V  *  L  V  S  L  H  Y  I  L  L  T  I  Q  S  K  C  K  F  W  P  R  M  :  K  K  K  K  T   </first_frame>
            <second_frame>  K  Y  K  D  I  W  S  G  T  Q  S  R  W  R  *  V  R  S  H  Q  H  K  F  F  S  E  G  G  R  R  A  E  F  C  F  R  F  V  R  S  T  S  S  A  R  *  F  S  G  L  W  E  L  I  K  R  V  S  K  *  *  R  *  R  E  T  L  Q  G  R  I  R  *  T  E  T  K  K  E  G  Q  K  A  C  Q  W  E  G  R  S  I  E  S  C  *  S  R  E  A  K  A  *  E  A  K  P  E  V  L  C  F  K  S  S  C  S  E  Y  L  K  D  G  *  S  I  A  A  W  R  C  N  C  L  Y  H  R  S  P  G  K  N  *  G  F  R  C  *  E  G  D  G  R  R  Q  A  K  A  A  G  Y  P  G  D  *  F  S  S  K  T  R  *  C  S  C  K  S  R  L  P  F  E  C  S  P  C  F  *  S  F  E  D  I  S  G  T  S  S  G  G  T  R  I  Q  C  L  I  N  R  K  R  R  T  C  T  H  V  L  Y  T  S  S  W  P  C  C  *  G  F  E  G  K  A  D  S  C  S  V  *  M  I  *  M  F  R  E  *  G  L  I  M  Q  C  M  L  T  V  V  K  C  *  P  F  C  F  K  D  P  V  V  S  I  S  D  Q  I  V  M  L  C  S  I  I  R  V  *  A  S  M  S  S  W  *  V  C  I  I  F  C  *  L  Y  N  L  N  V  S  F  G  R  E  * :   K  K  K  K  Q  </second_frame>
            <third_frame>   N  T  K  I  F  G  R  E  L  S  L  G  G  A  K  S  G  P  I  S  I  N  F  S  P  K  V  E  E  E  L  S  F  A  S  D  S  Y  E  V  Q  A  A  L  G  S  S  Q  V  Y  G  N  S  S  N  G  Y  R  S  D  E  G  E  G  K  L  Y  K  E  E  L  D  E  R  K  P  R  K  R  G  R  K  P  A  N  G  R  E  E  A  L  N  H  V  E  A  E  R  Q  R  R  E  K  L  N  Q  R  F  Y  A  L  R  A  V  V  P  N  I  S  K  M  D  K  A  S  L  L  G  D  A  I  A  Y  I  T  D  L  Q  A  R  I  R  V  L  D  A  E  K  E  M  V  G  D  K  Q  K  Q  Q  V  I  L  E  I  D  F  H  Q  R  Q  D  D  A  V  V  R  V  G  C  P  L  N  A  H  P  V  S  R  V  L  K  T  F  Q  E  H  Q  V  V  A  Q  E  S  N  V  S  L  T  E  N  G  E  L  V  H  M  F  S  I  R  A  P  G  P  A  A  E  D  L  K  E  K  L  T  A  A  L  S  K  *  F  R  C  S  E  N  K  V  *  S  C  N  V  C  *  L  *  L  N  A  S  R  F  A  L  K  T  R  W  S  V  S  V  I  R  L  L  C  F  A  R  L  F  V  Y  E  H  Q  C  L  A  G  K  F  A  L  Y  F  V  D  Y  T  I  *  M  *  V  L  A  E  N   : E  K  K  K  N  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15398" stop="16114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKIFGRELSLGGAKSGPISINFSPKVEEELSFASDSYEVQAALGSSQVYGNSSNGYRSDEGEGKLYKEELDERKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQARIRVLDAEKEMVGDKQKQQVILEIDFHQRQDDAVVRVGCPLNAHPVSRVLKTFQEHQVVAQESNVSLTENGELVHMFSIRAPGPAAEDLKEKLTAALSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26903" PGL_stop="29387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26903" e_stop="27070"/>
            <exon e_start="28268" e_stop="28396"/>
            <exon e_start="29097" e_stop="29240"/>
            <exon e_start="29366" e_stop="29387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="0.911"/>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="0.984"/>
          <exon-intron don_prob="0.960" acc_prob="0.594" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="26903" e_stop="27070" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27071" i_stop="28267" i_length="1197"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="28268" e_stop="28396" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="28397" i_stop="29096" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="29097" e_stop="29240" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.594">
            <gDNA_intron_boundary i_start="29241" i_stop="29365" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29366" e_stop="29387" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26903" stop="27070"/>
              <exon start="28268" stop="28396"/>
              <exon start="29097" stop="29240"/>
              <exon start="29366" stop="29387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAATTAATTAAATACCTTCTCCGTCCATCACTTTATTATTACCGTTCCGACACCGGCGATTTTCGATTTTCTGGAATTTTCACAATTTATGCGACCACATAACTTCATTTCCTTTTTTGCTCAATGGAAATGCAAAATTAATTAGCTCTTTCTCGGATATAAATG : GGCATTCCAGTAAATATTACTGTAGGTTCTCATGTGTGGATTGAGGACCCATCAGTTGCTTGGATTGATGCACAAGTATCGGAGGTTAATGGACAGGAAGTTCAGGTTCAGACATCTGATGGGAGGACG : GTTGTAGCAACTTTATCAAAAACTCACCCCAAGGATGAAGATGCTCCAGATGGAGGAGTGGATGACATGACTGAACTTTCATATTTGCATGAGCCTGGAGTCTTACATAATTTGGCAACAAGATATCAACTCAACGAAATCTAT : ACTTATACTGGAAGTATTCTTA</gDNA_template>
            <first_frame> D  Q  L  I  K  Y  L  L  R  P  S  L  Y  Y  Y  R  S  D  T  G  D  F  R  F  S  G  I  F  T  I  Y  A  T  T  *  L  H  F  L  F  C  S  M  E  M  Q  N  *  L  A  L  S  R  I  *  M  :  G  I  P  V  N  I  T  V  G  S  H  V  W  I  E  D  P  S  V  A  W  I  D  A  Q  V  S  E  V  N  G  Q  E  V  Q  V  Q  T  S  D  G  R  T  :  V  V  A  T  L  S  K  T  H  P  K  D  E  D  A  P  D  G  G  V  D  D  M  T  E  L  S  Y  L  H  E  P  G  V  L  H  N  L  A  T  R  Y  Q  L  N  E  I  Y  :  T  Y  T  G  S  I  L  </first_frame>
            <second_frame>  I  N  *  L  N  T  F  S  V  H  H  F  I  I  T  V  P  T  P  A  I  F  D  F  L  E  F  S  Q  F  M  R  P  H  N  F  I  S  F  F  A  Q  W  K  C  K  I  N  *  L  F  L  G  Y  K  W :   A  F  Q  *  I  L  L  *  V  L  M  C  G  L  R  T  H  Q  L  L  G  L  M  H  K  Y  R  R  L  M  D  R  K  F  R  F  R  H  L  M  G  G  R :   L  *  Q  L  Y  Q  K  L  T  P  R  M  K  M  L  Q  M  E  E  W  M  T  *  L  N  F  H  I  C  M  S  L  E  S  Y  I  I  W  Q  Q  D  I  N  S  T  K  S  I :   L  I  L  E  V  F  L </second_frame>
            <third_frame>   S  I  N  *  I  P  S  P  S  I  T  L  L  L  P  F  R  H  R  R  F  S  I  F  W  N  F  H  N  L  C  D  H  I  T  S  F  P  F  L  L  N  G  N  A  K  L  I  S  S  F  S  D  I  N   : G  H  S  S  K  Y  Y  C  R  F  S  C  V  D  *  G  P  I  S  C  L  D  *  C  T  S  I  G  G  *  W  T  G  S  S  G  S  D  I  *  W  E  D   : G  C  S  N  F  I  K  N  S  P  Q  G  *  R  C  S  R  W  R  S  G  *  H  D  *  T  F  I  F  A  *  A  W  S  L  T  *  F  G  N  K  I  S  T  Q  R  N  L   : Y  L  Y  W  K  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27068" stop="27070"/>
                    <exon start="28268" stop="28396"/>
                    <exon start="29097" stop="29240"/>
                    <exon start="29366" stop="29386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGIPVNITVGSHVWIEDPSVAWIDAQVSEVNGQEVQVQTSDGRTVVATLSKTHPKDEDAPDGGVDDMTELSYLHEPGVLHNLATRYQLNEIYTYTGSIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38175" PGL_stop="39894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38175" e_stop="38384"/>
            <exon e_start="38542" e_stop="38681"/>
            <exon e_start="39388" e_stop="39894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.806" acc_prob="0.978" e_score="0.986"/>
          <exon-intron don_prob="0.960" acc_prob="0.855" e_score="0.993"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="38175" e_stop="38384" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.806" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38385" i_stop="38541" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="38542" e_stop="38681" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.855">
            <gDNA_intron_boundary i_start="38682" i_stop="39387" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="39388" e_stop="39894" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38175" stop="38384"/>
              <exon start="38542" stop="38681"/>
              <exon start="39388" stop="39894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGCAAAGGATCAGGAAATAGCAAAATTGCAGAATTCAATGCGAGACATGCAAAGCAAACTGAGCGAAACAGATACACTACCCATCAGGGAATATGAGGCTGCTCCAAAAGCAGTTGAAGAAGACTCTTTGATTGTTGATAAGAAACCAATTCTTGTGGAGGATGAAGAAATCATTGAATCTTTAACTGCAGAGTTGAAAACTTTAAAG : GTGTTATATCAAAAAGAAAAGCAACGCGCTGATGATTCTGAGAGGAAATGTGCTGAAGTTCAAGAATCAAGTAAAGAGAAGTGCCGGAAGTTGGAAGAAACTGAAAGAAAAGTTCAACAACTTCAGGATTCAGTTAACAG : ATATCTTTTACAAGGAGTGCTGCTTGGGATGCTATACTCACGGCGCATAACCTGAGGAAGAGGGGATGCATCATTATAACCAGTTTGTATGTGCAAGAAGAATTGAGAAGACACCAATCATTTGCTCCTTCACTCCAACTATGCAACAGAACCTTGGAGTAAGGTGTATTCTTTGTCCAATATCTCTTGGGTACTCCCTAGAACTAATGCAGAAACTAGCATCTTGGAGGATGAAAGTGGGGAGAGACGGGAGGAAAATATGGAGGTTAGCAACCTATACATCTTTTGGTAAATATGAAGAGAATGGAAAAAGGGATGCTTGGGAGAGTTGAAAATCACATGGATGGTCATGAGTTTATTGTATCTATACTGTCGGTGTAAAGAAAGCATTCCATTATGTATAGACAATGGAATGGATTTTTCAAACACCTTCGAAATTGTTGTAACTTCGGCATCACCTTGGTGCTTATTAATGAAATGATTTATTTGATTCATCAAACAAAAAGA</gDNA_template>
            <first_frame> K  A  K  D  Q  E  I  A  K  L  Q  N  S  M  R  D  M  Q  S  K  L  S  E  T  D  T  L  P  I  R  E  Y  E  A  A  P  K  A  V  E  E  D  S  L  I  V  D  K  K  P  I  L  V  E  D  E  E  I  I  E  S  L  T  A  E  L  K  T  L  K  :  V  L  Y  Q  K  E  K  Q  R  A  D  D  S  E  R  K  C  A  E  V  Q  E  S  S  K  E  K  C  R  K  L  E  E  T  E  R  K  V  Q  Q  L  Q  D  S  V  N  R :   Y  L  L  Q  G  V  L  L  G  M  L  Y  S  R  R  I  T  *  G  R  G  D  A  S  L  *  P  V  C  M  C  K  K  N  *  E  D  T  N  H  L  L  L  H  S  N  Y  A  T  E  P  W  S  K  V  Y  S  L  S  N  I  S  W  V  L  P  R  T  N  A  E  T  S  I  L  E  D  E  S  G  E  R  R  E  E  N  M  E  V  S  N  L  Y  I  F  W  *  I  *  R  E  W  K  K  G  C  L  G  E  L  K  I  T  W  M  V  M  S  L  L  Y  L  Y  C  R  C  K  E  S  I  P  L  C  I  D  N  G  M  D  F  S  N  T  F  E  I  V  V  T  S  A  S  P  W  C  L  L  M  K  *  F  I  *  F  I  K  Q  K   </first_frame>
            <second_frame>  R  Q  R  I  R  K  *  Q  N  C  R  I  Q  C  E  T  C  K  A  N  *  A  K  Q  I  H  Y  P  S  G  N  M  R  L  L  Q  K  Q  L  K  K  T  L  *  L  L  I  R  N  Q  F  L  W  R  M  K  K  S  L  N  L  *  L  Q  S  *  K  L  *  R :   C  Y  I  K  K  K  S  N  A  L  M  I  L  R  G  N  V  L  K  F  K  N  Q  V  K  R  S  A  G  S  W  K  K  L  K  E  K  F  N  N  F  R  I  Q  L  T   : D  I  F  Y  K  E  C  C  L  G  C  Y  T  H  G  A  *  P  E  E  E  G  M  H  H  Y  N  Q  F  V  C  A  R  R  I  E  K  T  P  I  I  C  S  F  T  P  T  M  Q  Q  N  L  G  V  R  C  I  L  C  P  I  S  L  G  Y  S  L  E  L  M  Q  K  L  A  S  W  R  M  K  V  G  R  D  G  R  K  I  W  R  L  A  T  Y  T  S  F  G  K  Y  E  E  N  G  K  R  D  A  W  E  S  *  K  S  H  G  W  S  *  V  Y  C  I  Y  T  V  G  V  K  K  A  F  H  Y  V  *  T  M  E  W  I  F  Q  T  P  S  K  L  L  *  L  R  H  H  L  G  A  Y  *  *  N  D  L  F  D  S  S  N  K  K  </second_frame>
            <third_frame>   G  K  G  S  G  N  S  K  I  A  E  F  N  A  R  H  A  K  Q  T  E  R  N  R  Y  T  T  H  Q  G  I  *  G  C  S  K  S  S  *  R  R  L  F  D  C  *  *  E  T  N  S  C  G  G  *  R  N  H  *  I  F  N  C  R  V  E  N  F  K   : G  V  I  S  K  R  K  A  T  R  *  *  F  *  E  E  M  C  *  S  S  R  I  K  *  R  E  V  P  E  V  G  R  N  *  K  K  S  S  T  T  S  G  F  S  *  Q  :  I  S  F  T  R  S  A  A  W  D  A  I  L  T  A  H  N  L  R  K  R  G  C  I  I  I  T  S  L  Y  V  Q  E  E  L  R  R  H  Q  S  F  A  P  S  L  Q  L  C  N  R  T  L  E  *  G  V  F  F  V  Q  Y  L  L  G  T  P  *  N  *  C  R  N  *  H  L  G  G  *  K  W  G  E  T  G  G  K  Y  G  G  *  Q  P  I  H  L  L  V  N  M  K  R  M  E  K  G  M  L  G  R  V  E  N  H  M  D  G  H  E  F  I  V  S  I  L  S  V  *  R  K  H  S  I  M  Y  R  Q  W  N  G  F  F  K  H  L  R  N  C  C  N  F  G  I  T  L  V  L  I  N  E  M  I  Y  L  I  H  Q  T  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38175" stop="38384"/>
                    <exon start="38542" stop="38681"/>
                    <exon start="39388" stop="39442"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKDQEIAKLQNSMRDMQSKLSETDTLPIREYEAAPKAVEEDSLIVDKKPILVEDEEIIESLTAELKTLKVLYQKEKQRADDSERKCAEVQESSKEKCRKLEETERKVQQLQDSVNRYLLQGVLLGMLYSRRIT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39438" stop="39719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEGMHHYNQFVCARRIEKTPIICSFTPTMQQNLGVRCILCPISLGYSLELMQKLASWRMKVGRDGRKIWRLATYTSFGKYEENGKRDAWES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51404" PGL_stop="50226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51404" e_stop="51203"/>
            <exon e_start="51099" e_stop="50849"/>
            <exon e_start="50499" e_stop="50226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51404" e_stop="51203" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51099" e_stop="50849" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.872">
            <gDNA_intron_boundary i_start="50848" i_stop="50500" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="50499" e_stop="50226" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51404" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50499" stop="50318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51404" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50499" stop="50432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51395" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50499" stop="50368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51390" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50499" stop="50226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51387" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50499" stop="50421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50499" stop="50319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51229" stop="51203"/>
              <exon start="51099" stop="50852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGGAAAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG : GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG : AGAAGTGATTAGTGCATATTCAATTGAAACAAGGAAGCTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATAGCCATTGTGACCCAAATTTGTTCACAATTTTGCTTCAAGACAATGTTTGTGGCTTACAAATTTTCAAGGATGGAAAATGGATTGCTGTGGAA</gDNA_template>
            <first_frame> S  N  G  K  *  F  S  V  K  L  V  Q  K  C  T  N  F  A  *  K  L  H  I  P  R  R  *  K  T  W  R  T  Y  C  S  F  K  W  *  Q  S  N  Y  R  L  D  Y  S  S  T  *  P  S  S  T  N  N  *  S  Q  S  G  F  W  L  F  S   : G  N  Q  P  W  D  F  R  N  I  I  G  R  D  S  R  C  V  E  R  I  F  *  D  A  S  *  R  E  S  K  V  L  L  S  *  P  K  *  Q  M  Q  T  L  H  K  H  Y  E  L  L  Q  *  R  *  T  L  L  E  R  C  F  S  T  S  L  S  S  Y  S  T  F  L  A  F  L  A  R  K  T  N  S  L  S  :  R  S  D  *  C  I  F  N  *  N  K  E  A  N  H  K  D  F  R  C  D  *  *  R  I  R  T  *  K  G  V  F  W  R  *  I  K  Q  S  S  N  A  I  S  E  L  L  S  S  M  S  *  S  K  F  G  T  W  N  A  *  P  L  *  P  K  F  V  H  N  F  A  S  R  Q  C  L  W  L  T  N  F  Q  G  W  K  M  D  C  C  G  </first_frame>
            <second_frame>  P  M  E  N  N  L  V  S  N  W  C  K  N  V  Q  T  L  P  E  S  Y  I  F  P  E  D  E  R  P  G  E  P  I  V  P  L  S  G  S  S  P  I  I  D  L  T  T  H  Q  H  D  Q  A  Q  Q  I  I  K  A  S  Q  D  F  G  Y  F  Q  :  V  I  N  H  G  I  S  E  T  L  L  E  E  T  V  D  V  L  K  E  F  F  E  M  P  A  K  E  K  A  K  Y  Y  S  V  D  P  N  S  K  C  K  L  Y  T  S  T  M  N  Y  S  N  E  D  K  H  Y  W  R  D  A  L  A  H  H  C  H  P  I  Q  H  F  L  P  F  W  P  E  K  P  T  R  Y  R :   E  V  I  S  A  Y  S  I  E  T  R  K  L  I  T  K  I  S  D  V  I  S  E  G  L  G  L  E  K  G  Y  F  G  G  E  L  S  K  V  Q  M  L  L  V  N  C  Y  P  P  C  P  D  P  N  L  A  L  G  M  H  S  H  C  D  P  N  L  F  T  I  L  L  Q  D  N  V  C  G  L  Q  I  F  K  D  G  K  W  I  A  V  E </second_frame>
            <third_frame>   Q  W  K  I  I  *  C  Q  T  G  A  K  M  Y  K  L  C  L  K  V  T  Y  S  Q  K  M  K  D  L  E  N  L  L  F  L  *  V  V  A  V  Q  L  *  T  *  L  L  I  N  M  T  K  L  N  K  *  L  K  P  V  R  I  L  A  I  F  R :   *  S  T  M  G  F  Q  K  H  Y  W  K  R  Q  *  M  C  *  K  N  F  L  R  C  Q  L  K  R  K  Q  S  T  T  Q  L  T  Q  I  A  N  A  N  S  T  Q  A  L  *  I  T  P  M  K  I  N  I  I  G  E  M  L  *  H  I  I  V  I  L  F  N  I  S  C  L  F  G  Q  K  N  Q  L  V  I   : E  K  *  L  V  H  I  Q  L  K  Q  G  S  *  S  Q  R  F  Q  M  *  L  V  K  D  *  D  L  K  R  G  I  L  E  V  N  *  A  K  F  K  C  Y  *  *  T  V  I  L  H  V  L  I  Q  I  W  H  L  E  C  I  A  I  V  T  Q  I  C  S  Q  F  C  F  K  T  M  F  V  A  Y  K  F  S  R  M  E  N  G  L  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51403" stop="51203"/>
                    <exon start="51099" stop="50849"/>
                    <exon start="50499" stop="50226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMENNLVSNWCKNVQTLPESYIFPEDERPGEPIVPLSGSSPIIDLTTHQHDQAQQIIKASQDFGYFQVINHGISETLLEETVDVLKEFFEMPAKEKAKYYSVDPNSKCKLYTSTMNYSNEDKHYWRDALAHHCHPIQHFLPFWPEKPTRYREVISAYSIETRKLITKISDVISEGLGLEKGYFGGELSKVQMLLVNCYPPCPDPNLALGMHSHCDPNLFTILLQDNVCGLQIFKDGKWIAVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51395" e_stop="51203"/>
            <exon e_start="51099" e_stop="50849"/>
            <exon e_start="50462" e_stop="50301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.959"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="51395" e_stop="51203" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51202" i_stop="51100" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="51099" e_stop="50849" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50848" i_stop="50463" i_length="386"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="50462" e_stop="50301" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51395" stop="51203"/>
              <exon start="51099" stop="50849"/>
              <exon start="50462" stop="50301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51229" stop="51203"/>
              <exon start="51099" stop="50852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATTTAGTGTCAAACTGGTGCAAAAATGTACAAACTTTGCCTGAAAGTTACATATTCCCAGAAGATGAAAGACCTGGAGAACCTATTGTTCCTTTAAGTGGTAGCAGTCCAATTATAGACTTGACTACTCATCAACATGACCAAGCTCAACAAATAATTAAAGCCAGTCAGGATTTTGGCTATTTTCAG : GTAATCAACCATGGGATTTCAGAAACATTATTGGAAGAGACAGTAGATGTGTTGAAAGAATTTTTTGAGATGCCAGCTAAAGAGAAAGCAAAGTACTACTCAGTTGACCCAAATAGCAAATGCAAACTCTACACAAGCACTATGAATTACTCCAATGAAGATAAACATTATTGGAGAGATGCTTTAGCACATCATTGTCATCCTATTCAACATTTCTTGCCTTTTTGGCCAGAAAAACCAACTCGTTATCG : CTAATCACAAAGATTTCAGATGTGATTAGTGAAGGATTAGGACTTGAAAAGGGGTATTTTGGAGGTGAATTAAGCAAAGTTCAAATGCTATTAGTGAACTGTTATCCTCCATGTCCTGATCCAAATTTGGCACTTGGAATGCATAGCCATTGTGACCCAAAT</gDNA_template>
            <first_frame> K  *  F  S  V  K  L  V  Q  K  C  T  N  F  A  *  K  L  H  I  P  R  R  *  K  T  W  R  T  Y  C  S  F  K  W  *  Q  S  N  Y  R  L  D  Y  S  S  T  *  P  S  S  T  N  N  *  S  Q  S  G  F  W  L  F  S   : G  N  Q  P  W  D  F  R  N  I  I  G  R  D  S  R  C  V  E  R  I  F  *  D  A  S  *  R  E  S  K  V  L  L  S  *  P  K  *  Q  M  Q  T  L  H  K  H  Y  E  L  L  Q  *  R  *  T  L  L  E  R  C  F  S  T  S  L  S  S  Y  S  T  F  L  A  F  L  A  R  K  T  N  S  L  S  :  L  I  T  K  I  S  D  V  I  S  E  G  L  G  L  E  K  G  Y  F  G  G  E  L  S  K  V  Q  M  L  L  V  N  C  Y  P  P  C  P  D  P  N  L  A  L  G  M  H  S  H  C  D  P  N </first_frame>
            <second_frame>  N  N  L  V  S  N  W  C  K  N  V  Q  T  L  P  E  S  Y  I  F  P  E  D  E  R  P  G  E  P  I  V  P  L  S  G  S  S  P  I  I  D  L  T  T  H  Q  H  D  Q  A  Q  Q  I  I  K  A  S  Q  D  F  G  Y  F  Q  :  V  I  N  H  G  I  S  E  T  L  L  E  E  T  V  D  V  L  K  E  F  F  E  M  P  A  K  E  K  A  K  Y  Y  S  V  D  P  N  S  K  C  K  L  Y  T  S  T  M  N  Y  S  N  E  D  K  H  Y  W  R  D  A  L  A  H  H  C  H  P  I  Q  H  F  L  P  F  W  P  E  K  P  T  R  Y  R :   *  S  Q  R  F  Q  M  *  L  V  K  D  *  D  L  K  R  G  I  L  E  V  N  *  A  K  F  K  C  Y  *  *  T  V  I  L  H  V  L  I  Q  I  W  H  L  E  C  I  A  I  V  T  Q   </second_frame>
            <third_frame>   I  I  *  C  Q  T  G  A  K  M  Y  K  L  C  L  K  V  T  Y  S  Q  K  M  K  D  L  E  N  L  L  F  L  *  V  V  A  V  Q  L  *  T  *  L  L  I  N  M  T  K  L  N  K  *  L  K  P  V  R  I  L  A  I  F  R :   *  S  T  M  G  F  Q  K  H  Y  W  K  R  Q  *  M  C  *  K  N  F  L  R  C  Q  L  K  R  K  Q  S  T  T  Q  L  T  Q  I  A  N  A  N  S  T  Q  A  L  *  I  T  P  M  K  I  N  I  I  G  E  M  L  *  H  I  I  V  I  L  F  N  I  S  C  L  F  G  Q  K  N  Q  L  V  I   : A  N  H  K  D  F  R  C  D  *  *  R  I  R  T  *  K  G  V  F  W  R  *  I  K  Q  S  S  N  A  I  S  E  L  L  S  S  M  S  *  S  K  F  G  T  W  N  A  *  P  L  *  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51394" stop="51203"/>
                    <exon start="51099" stop="50849"/>
                    <exon start="50462" stop="50459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNLVSNWCKNVQTLPESYIFPEDERPGEPIVPLSGSSPIIDLTTHQHDQAQQIIKASQDFGYFQVINHGISETLLEETVDVLKEFFEMPAKEKAKYYSVDPNSKCKLYTSTMNYSNEDKHYWRDALAHHCHPIQHFLPFWPEKPTRYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="53385" PGL_stop="59633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53385" e_stop="53465"/>
            <exon e_start="54286" e_stop="54543"/>
            <exon e_start="55357" e_stop="55556"/>
            <exon e_start="55670" e_stop="56020"/>
            <exon e_start="56176" e_stop="56368"/>
            <exon e_start="56561" e_stop="56631"/>
            <exon e_start="57868" e_stop="58007"/>
            <exon e_start="58169" e_stop="58816"/>
            <exon e_start="59617" e_stop="59633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.648" acc_prob="0.621" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.988" e_score="0.997"/>
          <exon-only e_score="0.647"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53385" e_stop="53465" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="53466" i_stop="54285" i_length="820"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54286" e_stop="54543" e_length="258"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.980">
            <gDNA_intron_boundary i_start="54544" i_stop="55356" i_length="813"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55357" e_stop="55556" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.648" acc_prob="0.621">
            <gDNA_intron_boundary i_start="55557" i_stop="55669" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55670" e_stop="56020" e_length="351"/>
          </exon>
          <intron i_serial="4" don_prob="0.760" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56021" i_stop="56175" i_length="155"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56176" e_stop="56368" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56561" e_stop="56631" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57868" e_stop="58007" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.950" acc_prob="0.863">
            <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="58169" e_stop="58816" e_length="648"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.988">
            <gDNA_intron_boundary i_start="58817" i_stop="59616" i_length="800"/>
          </intron>
          <exon e_serial="9" e_score="0.647">
            <gDNA_exon_boundary e_start="59617" e_stop="59633" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53385" stop="53465"/>
              <exon start="54286" stop="54543"/>
              <exon start="55357" stop="55556"/>
              <exon start="55670" stop="56020"/>
              <exon start="56176" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="58007"/>
              <exon start="58169" stop="58816"/>
              <exon start="59617" stop="59633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53408" stop="53465"/>
              <exon start="54286" stop="54543"/>
              <exon start="55357" stop="55377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279230" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55815" stop="56020"/>
              <exon start="56176" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="58007"/>
              <exon start="58169" stop="58305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55815" stop="56020"/>
              <exon start="56176" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="58007"/>
              <exon start="58169" stop="58299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTTTGGGTGAGGCTGTTATTGTGGGTGCATTGAAATTGATGGCTAATCGATCTCTGAAGCGTTTTCTCAACAACATAG : AATTCAGTAGTGGTATCTCAAGGAAACATGTCTCCAACCAGAGATCTGTCTACAACATTCTTAACCGGTGCCAGTCAAATTATTCAAACACAGATGGTCATAAGCCTGAAGAGAAGAGCATAAGCAATGGTCGAGAGCGCAGTAAATATGATATTGATGATGGCGATTTTCATGATAATAAGTGGAAACTTGAGCTTGATTGGCTCTCTAAAGCTGTTGAACCTGCGGTCCAACTCTGCAGATGGGCTTTGTCAACAG : GAAATGGAAATGGAGACAAACTTCCACCGACCAATAAATCTCTTGCAGAGATATTTGCCAGCATTCAACGTAGTAAATTGGGACTTCAGGATTGGAGTCTCACTGATCTTACCATAGGCCTATATCTAATATATCTTCAGCAAGCATCCACCAGTCCTATTGAGGATGTTAAGGGTGAACAGATATACTCTGATTTGATT : GTTCAAGATCTCATCTACCACACTGAACTGGCTAAGGGTTCTTATAAAGATTGCACTGCAGCACTTTCAAGGAATTGTATGCTCCGGGAAAGTAATGTCGTCAAATTCATAAAAAATTCCAGTGTGTTAAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAG : GTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG : GATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTG : GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG : AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGAT : GAAAAGCAAAAACTTAA</gDNA_template>
            <first_frame> H  F  W  V  R  L  L  L  W  V  H  *  N  *  W  L  I  D  L  *  S  V  F  S  T  T  *  :  N  S  V  V  V  S  Q  G  N  M  S  P  T  R  D  L  S  T  T  F  L  T  G  A  S  Q  I  I  Q  T  Q  M  V  I  S  L  K  R  R  A  *  A  M  V  E  S  A  V  N  M  I  L  M  M  A  I  F  M  I  I  S  G  N  L  S  L  I  G  S  L  K  L  L  N  L  R  S  N  S  A  D  G  L  C  Q  Q  :  E  M  E  M  E  T  N  F  H  R  P  I  N  L  L  Q  R  Y  L  P  A  F  N  V  V  N  W  D  F  R  I  G  V  S  L  I  L  P  *  A  Y  I  *  Y  I  F  S  K  H  P  P  V  L  L  R  M  L  R  V  N  R  Y  T  L  I  *  L :   F  K  I  S  S  T  T  L  N  W  L  R  V  L  I  K  I  A  L  Q  H  F  Q  G  I  V  C  S  G  K  V  M  S  S  N  S  *  K  I  P  V  C  *  G  L  D  I  I  *  E  L  T  S  G  K  N  L  *  F  L  G  Y  V  E  L  I  Q  Y  M  I  L  *  L  I  L  F  L  Q  V  M  K  K  S  H  S  R  V  T  P  L  T  S  E  L  L  R  L  L  V  G  S  L  L  M  R  W  A  P  *  G  T  A  L  K  N  T  R :   L  R  L  V  G  H  S  L  G  G  A  T  A  S  L  L  A  I  M  L  R  N  M  S  A  R  E  L  G  F  S  P  D  I  V  S  A  V  G  Y  A  T  P  P  C  V  S  R  E  L  A  E  S  C  S  E  Y  V  T  T  V  V  M  Q  :  D  D  I  I  P  R  L  S  I  A  S  L  T  R  L  R  N  E  I  L  Q  T  N  W :   V  S  V  L  Q  K  E  D  W  R  G  V  V  D  L  F  T  N  A  K  Q  V  V  S  S  V  Q  D  V  A  R  R  L  A  D  Y  A  K  L  R  S  Q  T  K  H  S   : E  S  T  V  P  R  V  P  D  T  S  N  S  K  V  N  T  S  S  L  V  R  Q  E  G  E  A  E  L  F  V  P  G  T  L  Y  I  L  K  R  N  A  N  A  R  K  E  G  N  S  V  E  C  F  T  L  W  K  R  H  S  G  E  H  F  Q  R  I  L  L  S  N  N  I  I  S  A  H  K  C  D  S  H  Y  Y  A  L  R  D  V  L  K  G  L  P  G  S  T  D  E  A  V  F  *  *  I  N  F  T  Y  L  L  F  L  C  K  T  M  I  S  S  F  H  G  L  W  E  V  A  S  W  S  P  *  E  *  L  R  Y  V  Q  A  D  L  Y  Q  N  K  E  I  N  N  G  N  V  S  *  F  T  G  R  N  H  C  P  *  R  *  K  *  L  *  F  S  A  Y  T  F  M  F  S  C  S  T  R  K  S  S  C  I  F  I  S  T  S  F  R  T  C  T  A  A  I  Q  A  *  P  N  G  Q  S  S  *  F  F  *   : *  K  A  K  T  * </first_frame>
            <second_frame>  T  F  G  *  G  C  Y  C  G  C  I  E  I  D  G  *  S  I  S  E  A  F  S  Q  Q  H  R :   I  Q  *  W  Y  L  K  E  T  C  L  Q  P  E  I  C  L  Q  H  S  *  P  V  P  V  K  L  F  K  H  R  W  S  *  A  *  R  E  E  H  K  Q  W  S  R  A  Q  *  I  *  Y  *  *  W  R  F  S  *  *  *  V  E  T  *  A  *  L  A  L  *  S  C  *  T  C  G  P  T  L  Q  M  G  F  V  N  R :   K  W  K  W  R  Q  T  S  T  D  Q  *  I  S  C  R  D  I  C  Q  H  S  T  *  *  I  G  T  S  G  L  E  S  H  *  S  Y  H  R  P  I  S  N  I  S  S  A  S  I  H  Q  S  Y  *  G  C  *  G  *  T  D  I  L  *  F  D   : C  S  R  S  H  L  P  H  *  T  G  *  G  F  L  *  R  L  H  C  S  T  F  K  E  L  Y  A  P  G  K  *  C  R  Q  I  H  K  K  F  Q  C  V  K  A  W  I  L  Y  R  N  *  Q  A  E  K  T  C  S  S  W  D  T  W  N  S  Y  S  I  *  S  Y  N  *  Y  C  F  F  K  S  *  R  N  H  T  R  G  L  L  H  S  L  R  N  F  *  G  C  S  L  V  P  Y  S  *  D  G  H  H  K  E  L  P  *  K  T  Q   : G  *  G  L  L  V  I  P  L  E  V  Q  Q  L  R  C  W  L  S  C  F  E  I  C  R  P  E  N  L  V  L  V  L  I  L  F  L  Q  L  D  M  L  R  H  H  V  F  L  E  N  S  P  K  V  A  L  N  M  S  Q  Q  W  *  C  R :   M  I  *  Y  L  G  *  V  S  P  L  S  Q  G  L  G  M  K  F  F  K  L  T   : G  *  V  F  F  R  R  K  T  G  E  V  S  *  T  C  L  Q  M  Q  S  R  L  Y  L  L  C  K  M  *  L  G  D  L  L  I  M  L  N  Y  E  A  K  L  S  T  L  :  S  L  Q  F  H  V  F  L  I  P  P  T  P  K  S  I  H  H  L  L  *  D  R  K  A  K  L  S  C  L  S  P  E  L  F  I  F  *  R  G  M  Q  M  Q  E  R  K  V  T  V  W  N  V  S  H  F  G  R  D  T  R  G  S  I  F  R  G  Y  C  S  Q  I  T  *  F  L  P  T  S  V  I  A  I  I  M  R  *  G  M  F  L  K  V  C  L  V  L  P  M  K  L  F  S  D  E  *  I  S  H  I  C  S  F  C  V  K  Q  *  S  H  H  S  T  A  C  G  R  *  L  A  G  P  L  E  S  S  *  G  T  C  K  L  T  F  I  K  T  K  K  *  I  M  A  M  L  V  D  L  Q  V  E  T  I  V  L  R  D  K  N  S  C  N  F  Q  L  I  L  L  C  F  P  V  V  P  G  N  L  P  V  F  S  L  V  L  L  L  E  H  V  L  L  L  Y  K  H  S  Q  M  D  N  Q  A  N  F  F  D  :  E  K  Q  K  L   </second_frame>
            <third_frame>   L  L  G  E  A  V  I  V  G  A  L  K  L  M  A  N  R  S  L  K  R  F  L  N  N  I   : E  F  S  S  G  I  S  R  K  H  V  S  N  Q  R  S  V  Y  N  I  L  N  R  C  Q  S  N  Y  S  N  T  D  G  H  K  P  E  E  K  S  I  S  N  G  R  E  R  S  K  Y  D  I  D  D  G  D  F  H  D  N  K  W  K  L  E  L  D  W  L  S  K  A  V  E  P  A  V  Q  L  C  R  W  A  L  S  T   : G  N  G  N  G  D  K  L  P  P  T  N  K  S  L  A  E  I  F  A  S  I  Q  R  S  K  L  G  L  Q  D  W  S  L  T  D  L  T  I  G  L  Y  L  I  Y  L  Q  Q  A  S  T  S  P  I  E  D  V  K  G  E  Q  I  Y  S  D  L  I  :  V  Q  D  L  I  Y  H  T  E  L  A  K  G  S  Y  K  D  C  T  A  A  L  S  R  N  C  M  L  R  E  S  N  V  V  K  F  I  K  N  S  S  V  L  R  P  G  Y  Y  I  G  I  D  K  R  K  K  L  V  V  L  G  I  R  G  T  H  T  V  Y  D  L  I  T  D  I  V  S  S  S  H  E  E  I  T  L  E  G  Y  S  T  H  F  G  T  S  E  A  A  R  W  F  L  T  H  E  M  G  T  I  R  N  C  L  E  K  H  K  :  V  K  A  C  W  S  F  P  W  R  C  N  S  F  V  A  G  Y  H  A  S  K  Y  V  G  P  R  T  W  F  *  S  *  Y  C  F  C  S  W  I  C  Y  A  T  M  C  F  *  R  T  R  R  K  L  L  *  I  C  H  N  S  G  N  A   : G  *  Y  N  T  *  V  K  Y  R  L  S  H  K  A  *  E  *  N  S  S  N  *  L  :  G  E  C  S  S  E  G  R  L  E  R  C  R  R  L  V  Y  K  C  K  A  G  C  I  F  C  A  R  C  S  S  E  T  C  *  L  C  *  I  T  K  P  N  *  A  L  * :   V  Y  S  S  T  C  S  *  Y  L  Q  L  Q  S  Q  Y  I  I  S  C  E  T  G  R  R  S  *  V  V  C  P  R  N  S  L  Y  F  E  E  E  C  K  C  K  K  G  R  *  Q  C  G  M  F  H  T  L  E  E  T  L  G  G  A  F  S  E  D  T  A  L  K  *  H  N  F  C  P  Q  V  *  *  P  L  L  C  V  E  G  C  S  *  R  F  A  W  F  Y  R  *  S  C  F  L  M  N  K  F  H  I  F  A  L  F  V  *  N  N  D  L  I  I  P  R  L  V  G  G  S  *  L  V  P  L  R  V  V  E  V  R  A  S  *  P  L  S  K  Q  R  N  K  *  W  Q  C  *  L  I  Y  R  *  K  P  L  S  L  E  I  K  I  V  V  I  F  S  L  Y  F  Y  V  F  L  *  Y  Q  E  I  F  L  Y  F  H  *  Y  F  F  *  N  M  Y  C  C  Y  T  S  I  A  K  W  T  I  K  L  I  F  L  M :   K  S  K  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53387" stop="53465"/>
                    <exon start="54286" stop="54543"/>
                    <exon start="55357" stop="55556"/>
                    <exon start="55670" stop="56020"/>
                    <exon start="56176" stop="56268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLGEAVIVGALKLMANRSLKRFLNNIEFSSGISRKHVSNQRSVYNILNRCQSNYSNTDGHKPEEKSISNGRERSKYDIDDGDFHDNKWKLELDWLSKAVEPAVQLCRWALSTGNGNGDKLPPTNKSLAEIFASIQRSKLGLQDWSLTDLTIGLYLIYLQQASTSPIEDVKGEQIYSDLIVQDLIYHTELAKGSYKDCTAALSRNCMLRESNVVKFIKNSSVLRPGYYIGIDKRKKLVVLGIRGTHTVYDLITDIVSSSHEEITLEGYSTHFGTSEAARWFLTHEMGTIRNCLEKHKVKACWSFPWRCNSFVAGYHASKYVGPRTWF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58619" stop="58816"/>
                    <exon start="59617" stop="59631"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMLVDLQVETIVLRDKNSCNFQLILLCFPVVPGNLPVFSLVLLLEHVLLLYKHSQMDNQANFFDEKQKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55815" e_stop="56020"/>
            <exon e_start="56176" e_stop="56368"/>
            <exon e_start="56561" e_stop="56631"/>
            <exon e_start="57868" e_stop="58007"/>
            <exon e_start="58169" e_stop="58839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.000" e_score="0.947"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.964"/>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="0.901"/>
          <exon-intron don_prob="0.950" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="55815" e_stop="56020" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56021" i_stop="56175" i_length="155"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="56176" e_stop="56368" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="56561" e_stop="56631" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57868" e_stop="58007" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.863">
            <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="58169" e_stop="58839" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55815" stop="56020"/>
              <exon start="56176" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="58007"/>
              <exon start="58169" stop="58305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55815" stop="56020"/>
              <exon start="56176" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="58007"/>
              <exon start="58169" stop="58299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="58007"/>
              <exon start="58169" stop="58839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAG : GTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG : GATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTG : GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG : AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGATGTTTCCTTTCTTATATTTGAAAC</gDNA_template>
            <first_frame> *  E  L  T  S  G  K  N  L  *  F  L  G  Y  V  E  L  I  Q  Y  M  I  L  *  L  I  L  F  L  Q  V  M  K  K  S  H  S  R  V  T  P  L  T  S  E  L  L  R  L  L  V  G  S  L  L  M  R  W  A  P  *  G  T  A  L  K  N  T  R :   L  R  L  V  G  H  S  L  G  G  A  T  A  S  L  L  A  I  M  L  R  N  M  S  A  R  E  L  G  F  S  P  D  I  V  S  A  V  G  Y  A  T  P  P  C  V  S  R  E  L  A  E  S  C  S  E  Y  V  T  T  V  V  M  Q  :  D  D  I  I  P  R  L  S  I  A  S  L  T  R  L  R  N  E  I  L  Q  T  N  W :   V  S  V  L  Q  K  E  D  W  R  G  V  V  D  L  F  T  N  A  K  Q  V  V  S  S  V  Q  D  V  A  R  R  L  A  D  Y  A  K  L  R  S  Q  T  K  H  S   : E  S  T  V  P  R  V  P  D  T  S  N  S  K  V  N  T  S  S  L  V  R  Q  E  G  E  A  E  L  F  V  P  G  T  L  Y  I  L  K  R  N  A  N  A  R  K  E  G  N  S  V  E  C  F  T  L  W  K  R  H  S  G  E  H  F  Q  R  I  L  L  S  N  N  I  I  S  A  H  K  C  D  S  H  Y  Y  A  L  R  D  V  L  K  G  L  P  G  S  T  D  E  A  V  F  *  *  I  N  F  T  Y  L  L  F  L  C  K  T  M  I  S  S  F  H  G  L  W  E  V  A  S  W  S  P  *  E  *  L  R  Y  V  Q  A  D  L  Y  Q  N  K  E  I  N  N  G  N  V  S  *  F  T  G  R  N  H  C  P  *  R  *  K  *  L  *  F  S  A  Y  T  F  M  F  S  C  S  T  R  K  S  S  C  I  F  I  S  T  S  F  R  T  C  T  A  A  I  Q  A  *  P  N  G  Q  S  S  *  F  F  *  C  F  L  S  Y  I  *  N </first_frame>
            <second_frame>  R  N  *  Q  A  E  K  T  C  S  S  W  D  T  W  N  S  Y  S  I  *  S  Y  N  *  Y  C  F  F  K  S  *  R  N  H  T  R  G  L  L  H  S  L  R  N  F  *  G  C  S  L  V  P  Y  S  *  D  G  H  H  K  E  L  P  *  K  T  Q   : G  *  G  L  L  V  I  P  L  E  V  Q  Q  L  R  C  W  L  S  C  F  E  I  C  R  P  E  N  L  V  L  V  L  I  L  F  L  Q  L  D  M  L  R  H  H  V  F  L  E  N  S  P  K  V  A  L  N  M  S  Q  Q  W  *  C  R :   M  I  *  Y  L  G  *  V  S  P  L  S  Q  G  L  G  M  K  F  F  K  L  T   : G  *  V  F  F  R  R  K  T  G  E  V  S  *  T  C  L  Q  M  Q  S  R  L  Y  L  L  C  K  M  *  L  G  D  L  L  I  M  L  N  Y  E  A  K  L  S  T  L  :  S  L  Q  F  H  V  F  L  I  P  P  T  P  K  S  I  H  H  L  L  *  D  R  K  A  K  L  S  C  L  S  P  E  L  F  I  F  *  R  G  M  Q  M  Q  E  R  K  V  T  V  W  N  V  S  H  F  G  R  D  T  R  G  S  I  F  R  G  Y  C  S  Q  I  T  *  F  L  P  T  S  V  I  A  I  I  M  R  *  G  M  F  L  K  V  C  L  V  L  P  M  K  L  F  S  D  E  *  I  S  H  I  C  S  F  C  V  K  Q  *  S  H  H  S  T  A  C  G  R  *  L  A  G  P  L  E  S  S  *  G  T  C  K  L  T  F  I  K  T  K  K  *  I  M  A  M  L  V  D  L  Q  V  E  T  I  V  L  R  D  K  N  S  C  N  F  Q  L  I  L  L  C  F  P  V  V  P  G  N  L  P  V  F  S  L  V  L  L  L  E  H  V  L  L  L  Y  K  H  S  Q  M  D  N  Q  A  N  F  F  D  V  S  F  L  I  F  E   </second_frame>
            <third_frame>   G  I  D  K  R  K  K  L  V  V  L  G  I  R  G  T  H  T  V  Y  D  L  I  T  D  I  V  S  S  S  H  E  E  I  T  L  E  G  Y  S  T  H  F  G  T  S  E  A  A  R  W  F  L  T  H  E  M  G  T  I  R  N  C  L  E  K  H  K  :  V  K  A  C  W  S  F  P  W  R  C  N  S  F  V  A  G  Y  H  A  S  K  Y  V  G  P  R  T  W  F  *  S  *  Y  C  F  C  S  W  I  C  Y  A  T  M  C  F  *  R  T  R  R  K  L  L  *  I  C  H  N  S  G  N  A   : G  *  Y  N  T  *  V  K  Y  R  L  S  H  K  A  *  E  *  N  S  S  N  *  L  :  G  E  C  S  S  E  G  R  L  E  R  C  R  R  L  V  Y  K  C  K  A  G  C  I  F  C  A  R  C  S  S  E  T  C  *  L  C  *  I  T  K  P  N  *  A  L  * :   V  Y  S  S  T  C  S  *  Y  L  Q  L  Q  S  Q  Y  I  I  S  C  E  T  G  R  R  S  *  V  V  C  P  R  N  S  L  Y  F  E  E  E  C  K  C  K  K  G  R  *  Q  C  G  M  F  H  T  L  E  E  T  L  G  G  A  F  S  E  D  T  A  L  K  *  H  N  F  C  P  Q  V  *  *  P  L  L  C  V  E  G  C  S  *  R  F  A  W  F  Y  R  *  S  C  F  L  M  N  K  F  H  I  F  A  L  F  V  *  N  N  D  L  I  I  P  R  L  V  G  G  S  *  L  V  P  L  R  V  V  E  V  R  A  S  *  P  L  S  K  Q  R  N  K  *  W  Q  C  *  L  I  Y  R  *  K  P  L  S  L  E  I  K  I  V  V  I  F  S  L  Y  F  Y  V  F  L  *  Y  Q  E  I  F  L  Y  F  H  *  Y  F  F  *  N  M  Y  C  C  Y  T  S  I  A  K  W  T  I  K  L  I  F  L  M  F  P  F  L  Y  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55998" stop="56020"/>
                    <exon start="56176" stop="56368"/>
                    <exon start="56561" stop="56631"/>
                    <exon start="57868" stop="58007"/>
                    <exon start="58169" stop="58479"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTALKNTRLRLVGHSLGGATASLLAIMLRNMSARELGFSPDIVSAVGYATPPCVSRELAESCSEYVTTVVMQDDIIPRLSIASLTRLRNEILQTNWVSVLQKEDWRGVVDLFTNAKQVVSSVQDVARRLADYAKLRSQTKHSESTVPRVPDTSNSKVNTSSLVRQEGEAELFVPGTLYILKRNANARKEGNSVECFTLWKRHSGEHFQRILLSNNIISAHKCDSHYYALRDVLKGLPGSTDEAVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58619" stop="58837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMLVDLQVETIVLRDKNSCNFQLILLCFPVVPGNLPVFSLVLLLEHVLLLYKHSQMDNQANFFDVSFLIFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="57606" e_stop="57657"/>
            <exon e_start="57868" e_stop="58007"/>
            <exon e_start="58169" e_stop="58839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57606" e_stop="57657" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.949">
            <gDNA_intron_boundary i_start="57658" i_stop="57867" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57868" e_stop="58007" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.863">
            <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="58169" e_stop="58839" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57606" stop="57657"/>
              <exon start="57868" stop="58007"/>
              <exon start="58169" stop="58507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="58007"/>
              <exon start="58169" stop="58839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGTGCAGAGAGACTTTAAGACCTAGCTTTGCCGTGTGTTGAAATGACAA : GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG : AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGATGTTTCCTTTCTTATATTTGAAAC</gDNA_template>
            <first_frame> E  S  A  E  R  L  *  D  L  A  L  P  C  V  E  M  T   : R  *  V  F  F  R  R  K  T  G  E  V  S  *  T  C  L  Q  M  Q  S  R  L  Y  L  L  C  K  M  *  L  G  D  L  L  I  M  L  N  Y  E  A  K  L  S  T  L  :  S  L  Q  F  H  V  F  L  I  P  P  T  P  K  S  I  H  H  L  L  *  D  R  K  A  K  L  S  C  L  S  P  E  L  F  I  F  *  R  G  M  Q  M  Q  E  R  K  V  T  V  W  N  V  S  H  F  G  R  D  T  R  G  S  I  F  R  G  Y  C  S  Q  I  T  *  F  L  P  T  S  V  I  A  I  I  M  R  *  G  M  F  L  K  V  C  L  V  L  P  M  K  L  F  S  D  E  *  I  S  H  I  C  S  F  C  V  K  Q  *  S  H  H  S  T  A  C  G  R  *  L  A  G  P  L  E  S  S  *  G  T  C  K  L  T  F  I  K  T  K  K  *  I  M  A  M  L  V  D  L  Q  V  E  T  I  V  L  R  D  K  N  S  C  N  F  Q  L  I  L  L  C  F  P  V  V  P  G  N  L  P  V  F  S  L  V  L  L  L  E  H  V  L  L  L  Y  K  H  S  Q  M  D  N  Q  A  N  F  F  D  V  S  F  L  I  F  E   </first_frame>
            <second_frame>  K  V  Q  R  D  F  K  T  *  L  C  R  V  L  K  *  Q  :  G  E  C  S  S  E  G  R  L  E  R  C  R  R  L  V  Y  K  C  K  A  G  C  I  F  C  A  R  C  S  S  E  T  C  *  L  C  *  I  T  K  P  N  *  A  L  * :   V  Y  S  S  T  C  S  *  Y  L  Q  L  Q  S  Q  Y  I  I  S  C  E  T  G  R  R  S  *  V  V  C  P  R  N  S  L  Y  F  E  E  E  C  K  C  K  K  G  R  *  Q  C  G  M  F  H  T  L  E  E  T  L  G  G  A  F  S  E  D  T  A  L  K  *  H  N  F  C  P  Q  V  *  *  P  L  L  C  V  E  G  C  S  *  R  F  A  W  F  Y  R  *  S  C  F  L  M  N  K  F  H  I  F  A  L  F  V  *  N  N  D  L  I  I  P  R  L  V  G  G  S  *  L  V  P  L  R  V  V  E  V  R  A  S  *  P  L  S  K  Q  R  N  K  *  W  Q  C  *  L  I  Y  R  *  K  P  L  S  L  E  I  K  I  V  V  I  F  S  L  Y  F  Y  V  F  L  *  Y  Q  E  I  F  L  Y  F  H  *  Y  F  F  *  N  M  Y  C  C  Y  T  S  I  A  K  W  T  I  K  L  I  F  L  M  F  P  F  L  Y  L  K  </second_frame>
            <third_frame>   K  C  R  E  T  L  R  P  S  F  A  V  C  *  N  D  K :   V  S  V  L  Q  K  E  D  W  R  G  V  V  D  L  F  T  N  A  K  Q  V  V  S  S  V  Q  D  V  A  R  R  L  A  D  Y  A  K  L  R  S  Q  T  K  H  S   : E  S  T  V  P  R  V  P  D  T  S  N  S  K  V  N  T  S  S  L  V  R  Q  E  G  E  A  E  L  F  V  P  G  T  L  Y  I  L  K  R  N  A  N  A  R  K  E  G  N  S  V  E  C  F  T  L  W  K  R  H  S  G  E  H  F  Q  R  I  L  L  S  N  N  I  I  S  A  H  K  C  D  S  H  Y  Y  A  L  R  D  V  L  K  G  L  P  G  S  T  D  E  A  V  F  *  *  I  N  F  T  Y  L  L  F  L  C  K  T  M  I  S  S  F  H  G  L  W  E  V  A  S  W  S  P  *  E  *  L  R  Y  V  Q  A  D  L  Y  Q  N  K  E  I  N  N  G  N  V  S  *  F  T  G  R  N  H  C  P  *  R  *  K  *  L  *  F  S  A  Y  T  F  M  F  S  C  S  T  R  K  S  S  C  I  F  I  S  T  S  F  R  T  C  T  A  A  I  Q  A  *  P  N  G  Q  S  S  *  F  F  *  C  F  L  S  Y  I  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57650" stop="57657"/>
                    <exon start="57868" stop="58007"/>
                    <exon start="58169" stop="58479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDKVSVLQKEDWRGVVDLFTNAKQVVSSVQDVARRLADYAKLRSQTKHSESTVPRVPDTSNSKVNTSSLVRQEGEAELFVPGTLYILKRNANARKEGNSVECFTLWKRHSGEHFQRILLSNNIISAHKCDSHYYALRDVLKGLPGSTDEAVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58619" stop="58837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMLVDLQVETIVLRDKNSCNFQLILLCFPVVPGNLPVFSLVLLLEHVLLLYKHSQMDNQANFFDVSFLIFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="55717" e_stop="56020"/>
            <exon e_start="56168" e_stop="56368"/>
            <exon e_start="56561" e_stop="56631"/>
            <exon e_start="57868" e_stop="58007"/>
            <exon e_start="58169" e_stop="58839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.908" e_score="0.957"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.970"/>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="0.915"/>
          <exon-intron don_prob="0.950" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="55717" e_stop="56020" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.908">
            <gDNA_intron_boundary i_start="56021" i_stop="56167" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="56168" e_stop="56368" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="0.915">
            <gDNA_exon_boundary e_start="56561" e_stop="56631" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57868" e_stop="58007" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.863">
            <gDNA_intron_boundary i_start="58008" i_stop="58168" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="58169" e_stop="58839" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55717" stop="56020"/>
              <exon start="56168" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="57948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57880" stop="58007"/>
              <exon start="58169" stop="58539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="58007"/>
              <exon start="58169" stop="58839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGCACTGCAGCACTTTCAAGGAATTGTATGCTCCGGGAAAGTAATGTCGTCAAATTCATAAAAAATTCCAGTGTGTTAAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAG : GGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG : GATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTG : GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG : AGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATGATCTCATCATTCCACGGCTTGTGGGAGGTAGCTAGCTGGTCCCCTTGAGAGTAGTTGAGGTACGTGCAAGCTGACCTTTATCAAAACAAAGAAATAAATAATGGCAATGTTAGTTGATTTACAGGTAGAAACCATTGTCCTTAGAGATAAAAATAGTTGTAATTTTCAGCTTATACTTTTATGTTTTCCTGTAGTACCAGGAAATCTTCCTGTATTTTCATTAGTACTTCTTTTAGAACATGTACTGCTGCTATACAAGCATAGCCAAATGGACAATCAAGCTAATTTTTTTGATGTTTCCTTTCTTATATTTGAAAC</gDNA_template>
            <first_frame> R  L  H  C  S  T  F  K  E  L  Y  A  P  G  K  *  C  R  Q  I  H  K  K  F  Q  C  V  K  A  W  I  L  Y  R  N  *  Q  A  E  K  T  C  S  S  W  D  T  W  N  S  Y  S  I  *  S  Y  N  *  Y  C  F  F  K  S  *  R  N  H  T  R  G  L  L  H  S  L  R  N  F  *  G  C  S  L  V  P  Y  S  *  D  G  H  H  K  E  L  P  *  K  T  Q   : G  I  *  V  K  A  C  W  S  F  P  W  R  C  N  S  F  V  A  G  Y  H  A  S  K  Y  V  G  P  R  T  W  F  *  S  *  Y  C  F  C  S  W  I  C  Y  A  T  M  C  F  *  R  T  R  R  K  L  L  *  I  C  H  N  S  G  N  A   : G  *  Y  N  T  *  V  K  Y  R  L  S  H  K  A  *  E  *  N  S  S  N  *  L  :  G  E  C  S  S  E  G  R  L  E  R  C  R  R  L  V  Y  K  C  K  A  G  C  I  F  C  A  R  C  S  S  E  T  C  *  L  C  *  I  T  K  P  N  *  A  L  * :   V  Y  S  S  T  C  S  *  Y  L  Q  L  Q  S  Q  Y  I  I  S  C  E  T  G  R  R  S  *  V  V  C  P  R  N  S  L  Y  F  E  E  E  C  K  C  K  K  G  R  *  Q  C  G  M  F  H  T  L  E  E  T  L  G  G  A  F  S  E  D  T  A  L  K  *  H  N  F  C  P  Q  V  *  *  P  L  L  C  V  E  G  C  S  *  R  F  A  W  F  Y  R  *  S  C  F  L  M  N  K  F  H  I  F  A  L  F  V  *  N  N  D  L  I  I  P  R  L  V  G  G  S  *  L  V  P  L  R  V  V  E  V  R  A  S  *  P  L  S  K  Q  R  N  K  *  W  Q  C  *  L  I  Y  R  *  K  P  L  S  L  E  I  K  I  V  V  I  F  S  L  Y  F  Y  V  F  L  *  Y  Q  E  I  F  L  Y  F  H  *  Y  F  F  *  N  M  Y  C  C  Y  T  S  I  A  K  W  T  I  K  L  I  F  L  M  F  P  F  L  Y  L  K  </first_frame>
            <second_frame>  D  C  T  A  A  L  S  R  N  C  M  L  R  E  S  N  V  V  K  F  I  K  N  S  S  V  L  R  P  G  Y  Y  I  G  I  D  K  R  K  K  L  V  V  L  G  I  R  G  T  H  T  V  Y  D  L  I  T  D  I  V  S  S  S  H  E  E  I  T  L  E  G  Y  S  T  H  F  G  T  S  E  A  A  R  W  F  L  T  H  E  M  G  T  I  R  N  C  L  E  K  H  K  :  G  F  R  L  R  L  V  G  H  S  L  G  G  A  T  A  S  L  L  A  I  M  L  R  N  M  S  A  R  E  L  G  F  S  P  D  I  V  S  A  V  G  Y  A  T  P  P  C  V  S  R  E  L  A  E  S  C  S  E  Y  V  T  T  V  V  M  Q  :  D  D  I  I  P  R  L  S  I  A  S  L  T  R  L  R  N  E  I  L  Q  T  N  W :   V  S  V  L  Q  K  E  D  W  R  G  V  V  D  L  F  T  N  A  K  Q  V  V  S  S  V  Q  D  V  A  R  R  L  A  D  Y  A  K  L  R  S  Q  T  K  H  S   : E  S  T  V  P  R  V  P  D  T  S  N  S  K  V  N  T  S  S  L  V  R  Q  E  G  E  A  E  L  F  V  P  G  T  L  Y  I  L  K  R  N  A  N  A  R  K  E  G  N  S  V  E  C  F  T  L  W  K  R  H  S  G  E  H  F  Q  R  I  L  L  S  N  N  I  I  S  A  H  K  C  D  S  H  Y  Y  A  L  R  D  V  L  K  G  L  P  G  S  T  D  E  A  V  F  *  *  I  N  F  T  Y  L  L  F  L  C  K  T  M  I  S  S  F  H  G  L  W  E  V  A  S  W  S  P  *  E  *  L  R  Y  V  Q  A  D  L  Y  Q  N  K  E  I  N  N  G  N  V  S  *  F  T  G  R  N  H  C  P  *  R  *  K  *  L  *  F  S  A  Y  T  F  M  F  S  C  S  T  R  K  S  S  C  I  F  I  S  T  S  F  R  T  C  T  A  A  I  Q  A  *  P  N  G  Q  S  S  *  F  F  *  C  F  L  S  Y  I  *  N </second_frame>
            <third_frame>   I  A  L  Q  H  F  Q  G  I  V  C  S  G  K  V  M  S  S  N  S  *  K  I  P  V  C  *  G  L  D  I  I  *  E  L  T  S  G  K  N  L  *  F  L  G  Y  V  E  L  I  Q  Y  M  I  L  *  L  I  L  F  L  Q  V  M  K  K  S  H  S  R  V  T  P  L  T  S  E  L  L  R  L  L  V  G  S  L  L  M  R  W  A  P  *  G  T  A  L  K  N  T  R :   D  L  G  *  G  L  L  V  I  P  L  E  V  Q  Q  L  R  C  W  L  S  C  F  E  I  C  R  P  E  N  L  V  L  V  L  I  L  F  L  Q  L  D  M  L  R  H  H  V  F  L  E  N  S  P  K  V  A  L  N  M  S  Q  Q  W  *  C  R :   M  I  *  Y  L  G  *  V  S  P  L  S  Q  G  L  G  M  K  F  F  K  L  T   : G  *  V  F  F  R  R  K  T  G  E  V  S  *  T  C  L  Q  M  Q  S  R  L  Y  L  L  C  K  M  *  L  G  D  L  L  I  M  L  N  Y  E  A  K  L  S  T  L  :  S  L  Q  F  H  V  F  L  I  P  P  T  P  K  S  I  H  H  L  L  *  D  R  K  A  K  L  S  C  L  S  P  E  L  F  I  F  *  R  G  M  Q  M  Q  E  R  K  V  T  V  W  N  V  S  H  F  G  R  D  T  R  G  S  I  F  R  G  Y  C  S  Q  I  T  *  F  L  P  T  S  V  I  A  I  I  M  R  *  G  M  F  L  K  V  C  L  V  L  P  M  K  L  F  S  D  E  *  I  S  H  I  C  S  F  C  V  K  Q  *  S  H  H  S  T  A  C  G  R  *  L  A  G  P  L  E  S  S  *  G  T  C  K  L  T  F  I  K  T  K  K  *  I  M  A  M  L  V  D  L  Q  V  E  T  I  V  L  R  D  K  N  S  C  N  F  Q  L  I  L  L  C  F  P  V  V  P  G  N  L  P  V  F  S  L  V  L  L  L  E  H  V  L  L  L  Y  K  H  S  Q  M  D  N  Q  A  N  F  F  D  V  S  F  L  I  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55718" stop="56020"/>
                    <exon start="56168" stop="56368"/>
                    <exon start="56561" stop="56631"/>
                    <exon start="57868" stop="58007"/>
                    <exon start="58169" stop="58479"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCTAALSRNCMLRESNVVKFIKNSSVLRPGYYIGIDKRKKLVVLGIRGTHTVYDLITDIVSSSHEEITLEGYSTHFGTSEAARWFLTHEMGTIRNCLEKHKGFRLRLVGHSLGGATASLLAIMLRNMSARELGFSPDIVSAVGYATPPCVSRELAESCSEYVTTVVMQDDIIPRLSIASLTRLRNEILQTNWVSVLQKEDWRGVVDLFTNAKQVVSSVQDVARRLADYAKLRSQTKHSESTVPRVPDTSNSKVNTSSLVRQEGEAELFVPGTLYILKRNANARKEGNSVECFTLWKRHSGEHFQRILLSNNIISAHKCDSHYYALRDVLKGLPGSTDEAVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58619" stop="58837"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMLVDLQVETIVLRDKNSCNFQLILLCFPVVPGNLPVFSLVLLLEHVLLLYKHSQMDNQANFFDVSFLIFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="55717" e_stop="56020"/>
            <exon e_start="56168" e_stop="56368"/>
            <exon e_start="56561" e_stop="56631"/>
            <exon e_start="57868" e_stop="58007"/>
            <exon e_start="58115" e_stop="58521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.908" e_score="0.957"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.970"/>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="55717" e_stop="56020" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.908">
            <gDNA_intron_boundary i_start="56021" i_stop="56167" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="56168" e_stop="56368" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56369" i_stop="56560" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56561" e_stop="56631" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56632" i_stop="57867" i_length="1236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57868" e_stop="58007" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58008" i_stop="58114" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="58115" e_stop="58521" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55717" stop="56020"/>
              <exon start="56168" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="57948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56211" stop="56368"/>
              <exon start="56561" stop="56631"/>
              <exon start="57868" stop="58007"/>
              <exon start="58115" stop="58521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGCACTGCAGCACTTTCAAGGAATTGTATGCTCCGGGAAAGTAATGTCGTCAAATTCATAAAAAATTCCAGTGTGTTAAGGCCTGGATATTATATAGGAATTGACAAGCGGAAAAAACTTGTAGTTCTTGGGATACGTGGAACTCATACAGTATATGATCTTATAACTGATATTGTTTCTTCAAGTCATGAAGAAATCACACTCGAGGGTTACTCCACTCACTTCGGAACTTCTGAGGCTGCTCGTTGGTTCCTTACTCATGAGATGGGCACCATAAGGAACTGCCTTGAAAAACACAAG : GGATTTAGGTTAAGGCTTGTTGGTCATTCCCTTGGAGGTGCAACAGCTTCGTTGCTGGCTATCATGCTTCGAAATATGTCGGCCCGAGAACTTGGTTTTAGTCCTGATATTGTTTCTGCAGTTGGATATGCTACGCCACCATGTGTTTCTAGAGAACTCGCCGAAAGTTGCTCTGAATATGTCACAACAGTGGTAATGCAG : GATGATATAATACCTAGGTTAAGTATCGCCTCTCTCACAAGGCTTAGGAATGAAATTCTTCAAACTAACTG : GGTGAGTGTTCTTCAGAAGGAAGACTGGAGAGGTGTCGTAGACTTGTTTACAAATGCAAAGCAGGTTGTATCTTCTGTGCAAGATGTAGCTCGGAGACTTGCTGATTATGCTAAATTACGAAGCCAAACTAAGCACTCTG : ACATCCTTACTTCAATATTTTCAACATACTCAGATGTTAACGTTACCTGTACAGAGTCTACAGTTCCACGTGTTCCTGATACCTCCAACTCCAAAGTCAATACATCATCTCTTGTGAGACAGGAAGGCGAAGCTGAGTTGTTTGTCCCCGGAACTCTTTATATTTTGAAGAGGAATGCAAATGCAAGAAAGGAAGGTAACAGTGTGGAATGTTTCACACTTTGGAAGAGACACTCGGGGGAGCATTTTCAGAGGATACTGCTCTCAAATAACATAATTTCTGCCCACAAGTGTGATAGCCATTATTATGCGTTGAGGGATGTTCTTAAAGGTTTGCCTGGTTCTACCGATGAAGCTGTTTTCTGATGAATAAATTTCACATATTTGCTCTTTTTGTGTAAAACAATG</gDNA_template>
            <first_frame> R  L  H  C  S  T  F  K  E  L  Y  A  P  G  K  *  C  R  Q  I  H  K  K  F  Q  C  V  K  A  W  I  L  Y  R  N  *  Q  A  E  K  T  C  S  S  W  D  T  W  N  S  Y  S  I  *  S  Y  N  *  Y  C  F  F  K  S  *  R  N  H  T  R  G  L  L  H  S  L  R  N  F  *  G  C  S  L  V  P  Y  S  *  D  G  H  H  K  E  L  P  *  K  T  Q   : G  I  *  V  K  A  C  W  S  F  P  W  R  C  N  S  F  V  A  G  Y  H  A  S  K  Y  V  G  P  R  T  W  F  *  S  *  Y  C  F  C  S  W  I  C  Y  A  T  M  C  F  *  R  T  R  R  K  L  L  *  I  C  H  N  S  G  N  A   : G  *  Y  N  T  *  V  K  Y  R  L  S  H  K  A  *  E  *  N  S  S  N  *  L  :  G  E  C  S  S  E  G  R  L  E  R  C  R  R  L  V  Y  K  C  K  A  G  C  I  F  C  A  R  C  S  S  E  T  C  *  L  C  *  I  T  K  P  N  *  A  L  * :   H  P  Y  F  N  I  F  N  I  L  R  C  *  R  Y  L  Y  R  V  Y  S  S  T  C  S  *  Y  L  Q  L  Q  S  Q  Y  I  I  S  C  E  T  G  R  R  S  *  V  V  C  P  R  N  S  L  Y  F  E  E  E  C  K  C  K  K  G  R  *  Q  C  G  M  F  H  T  L  E  E  T  L  G  G  A  F  S  E  D  T  A  L  K  *  H  N  F  C  P  Q  V  *  *  P  L  L  C  V  E  G  C  S  *  R  F  A  W  F  Y  R  *  S  C  F  L  M  N  K  F  H  I  F  A  L  F  V  *  N  N  </first_frame>
            <second_frame>  D  C  T  A  A  L  S  R  N  C  M  L  R  E  S  N  V  V  K  F  I  K  N  S  S  V  L  R  P  G  Y  Y  I  G  I  D  K  R  K  K  L  V  V  L  G  I  R  G  T  H  T  V  Y  D  L  I  T  D  I  V  S  S  S  H  E  E  I  T  L  E  G  Y  S  T  H  F  G  T  S  E  A  A  R  W  F  L  T  H  E  M  G  T  I  R  N  C  L  E  K  H  K  :  G  F  R  L  R  L  V  G  H  S  L  G  G  A  T  A  S  L  L  A  I  M  L  R  N  M  S  A  R  E  L  G  F  S  P  D  I  V  S  A  V  G  Y  A  T  P  P  C  V  S  R  E  L  A  E  S  C  S  E  Y  V  T  T  V  V  M  Q  :  D  D  I  I  P  R  L  S  I  A  S  L  T  R  L  R  N  E  I  L  Q  T  N  W :   V  S  V  L  Q  K  E  D  W  R  G  V  V  D  L  F  T  N  A  K  Q  V  V  S  S  V  Q  D  V  A  R  R  L  A  D  Y  A  K  L  R  S  Q  T  K  H  S   : D  I  L  T  S  I  F  S  T  Y  S  D  V  N  V  T  C  T  E  S  T  V  P  R  V  P  D  T  S  N  S  K  V  N  T  S  S  L  V  R  Q  E  G  E  A  E  L  F  V  P  G  T  L  Y  I  L  K  R  N  A  N  A  R  K  E  G  N  S  V  E  C  F  T  L  W  K  R  H  S  G  E  H  F  Q  R  I  L  L  S  N  N  I  I  S  A  H  K  C  D  S  H  Y  Y  A  L  R  D  V  L  K  G  L  P  G  S  T  D  E  A  V  F  *  *  I  N  F  T  Y  L  L  F  L  C  K  T  M </second_frame>
            <third_frame>   I  A  L  Q  H  F  Q  G  I  V  C  S  G  K  V  M  S  S  N  S  *  K  I  P  V  C  *  G  L  D  I  I  *  E  L  T  S  G  K  N  L  *  F  L  G  Y  V  E  L  I  Q  Y  M  I  L  *  L  I  L  F  L  Q  V  M  K  K  S  H  S  R  V  T  P  L  T  S  E  L  L  R  L  L  V  G  S  L  L  M  R  W  A  P  *  G  T  A  L  K  N  T  R :   D  L  G  *  G  L  L  V  I  P  L  E  V  Q  Q  L  R  C  W  L  S  C  F  E  I  C  R  P  E  N  L  V  L  V  L  I  L  F  L  Q  L  D  M  L  R  H  H  V  F  L  E  N  S  P  K  V  A  L  N  M  S  Q  Q  W  *  C  R :   M  I  *  Y  L  G  *  V  S  P  L  S  Q  G  L  G  M  K  F  F  K  L  T   : G  *  V  F  F  R  R  K  T  G  E  V  S  *  T  C  L  Q  M  Q  S  R  L  Y  L  L  C  K  M  *  L  G  D  L  L  I  M  L  N  Y  E  A  K  L  S  T  L  :  T  S  L  L  Q  Y  F  Q  H  T  Q  M  L  T  L  P  V  Q  S  L  Q  F  H  V  F  L  I  P  P  T  P  K  S  I  H  H  L  L  *  D  R  K  A  K  L  S  C  L  S  P  E  L  F  I  F  *  R  G  M  Q  M  Q  E  R  K  V  T  V  W  N  V  S  H  F  G  R  D  T  R  G  S  I  F  R  G  Y  C  S  Q  I  T  *  F  L  P  T  S  V  I  A  I  I  M  R  *  G  M  F  L  K  V  C  L  V  L  P  M  K  L  F  S  D  E  *  I  S  H  I  C  S  F  C  V  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55718" stop="56020"/>
                    <exon start="56168" stop="56368"/>
                    <exon start="56561" stop="56631"/>
                    <exon start="57868" stop="58007"/>
                    <exon start="58115" stop="58479"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCTAALSRNCMLRESNVVKFIKNSSVLRPGYYIGIDKRKKLVVLGIRGTHTVYDLITDIVSSSHEEITLEGYSTHFGTSEAARWFLTHEMGTIRNCLEKHKGFRLRLVGHSLGGATASLLAIMLRNMSARELGFSPDIVSAVGYATPPCVSRELAESCSEYVTTVVMQDDIIPRLSIASLTRLRNEILQTNWVSVLQKEDWRGVVDLFTNAKQVVSSVQDVARRLADYAKLRSQTKHSDILTSIFSTYSDVNVTCTESTVPRVPDTSNSKVNTSSLVRQEGEAELFVPGTLYILKRNANARKEGNSVECFTLWKRHSGEHFQRILLSNNIISAHKCDSHYYALRDVLKGLPGSTDEAVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="70392" PGL_stop="74718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70392" e_stop="70658"/>
            <exon e_start="71609" e_stop="71704"/>
            <exon e_start="71805" e_stop="72023"/>
            <exon e_start="73024" e_stop="73120"/>
            <exon e_start="74052" e_stop="74114"/>
            <exon e_start="74213" e_stop="74718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70392" e_stop="70658" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71609" e_stop="71704" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.091">
            <gDNA_intron_boundary i_start="71705" i_stop="71804" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71805" e_stop="72023" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73024" e_stop="73120" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="73121" i_stop="74051" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74052" e_stop="74114" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="74115" i_stop="74212" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.919">
            <gDNA_exon_boundary e_start="74213" e_stop="74718" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70392" stop="70658"/>
              <exon start="71609" stop="71704"/>
              <exon start="71805" stop="71976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70434" stop="70658"/>
              <exon start="71609" stop="71704"/>
              <exon start="71805" stop="72023"/>
              <exon start="73024" stop="73120"/>
              <exon start="74052" stop="74114"/>
              <exon start="74213" stop="74245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70572" stop="70658"/>
              <exon start="71609" stop="71704"/>
              <exon start="71805" stop="72023"/>
              <exon start="73024" stop="73120"/>
              <exon start="74052" stop="74114"/>
              <exon start="74213" stop="74295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71968" stop="72023"/>
              <exon start="73024" stop="73120"/>
              <exon start="74052" stop="74114"/>
              <exon start="74213" stop="74718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423477" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATACATACAACTTTGTATCCCAAGTTTCACTGTACCCACAAAGTGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : ATTGAAGGTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCATTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCCAACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</gDNA_template>
            <first_frame> L  I  H  T  T  L  Y  P  K  F  H  C  T  H  K  V  N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  I  E  G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K  T  G  K  N  I  S  E  A  G  F  S  N  V  D  S  R  Q  V  V  L  S  T  A  S  L  I  N  P  H  I  I  G  I  A  R  N  *  I  H  I  Y  P  S  I  F  N  G  V  F  A  N  L  *  L  M  I  L  K  L  L  H  N  I  F  Q  P  A  S  Y  I  A  S  E  Q  Q  G  H  N  S  Y  S  T  I  M  H  H  H  L  Q  V  K  R  *  V  F  I  L  I  L  Y  N  N  I  G  L  I  K  K  S  D  I  V  G  E  D  L  Y  S  Q  L  Q  L  V  R  D  *  G  V  V  V  V  I  V  V  L  L  F  L  Q  R  D </first_frame>
            <second_frame>  *  Y  I  Q  L  C  I  P  S  F  T  V  P  T  K  *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  K  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G  K  Q  E  R  I  Y  L  K  P  V  S  Q  M  *  I  V  V  K  *  Y  Y  Q  L  P  L  *  *  I  L  I  S  L  A  *  L  A  T  R  Y  I  Y  I  Q  V  F  S  M  V  S  L  R  I  F  S  S  *  S  *  S  F  S  T  T  Y  F  N  R  L  V  I  L  P  P  N  N  K  G  T  T  A  T  V  Q  L  C  I  I  I  Y  K  *  R  D  E  F  L  F  L  F  C  I  I  T  L  A  *  L  K  R  V  T  *  S  V  R  I  Y  I  A  N  S  N  L  F  G  I  E  V  L  *  *  L  L  L  F  Y  C  S  F  K  E   </second_frame>
            <third_frame>   D  T  Y  N  F  V  S  Q  V  S  L  Y  P  Q  S  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : D  *  R  L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  N  R  K  E  Y  I  *  S  R  F  L  K  C  R  *  S  S  S  S  I  I  N  C  L  S  D  K  S  S  Y  H  W  H  S  S  Q  L  D  T  Y  I  S  K  Y  F  Q  W  C  L  C  E  S  L  A  H  D  L  E  A  S  P  Q  H  I  S  T  G  *  L  Y  C  L  R  T  T  R  A  Q  Q  L  Q  Y  N  Y  A  S  S  F  T  S  K  E  M  S  F  Y  S  Y  F  V  *  *  H  W  L  D  *  K  E  *  H  S  R  *  G  F  I  *  P  T  P  T  C  S  G  L  R  C  C  S  S  Y  C  C  F  I  V  P  S  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70392" stop="70658"/>
                    <exon start="71609" stop="71704"/>
                    <exon start="71805" stop="72023"/>
                    <exon start="73024" stop="73120"/>
                    <exon start="74052" stop="74114"/>
                    <exon start="74213" stop="74406"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHTTLYPKFHCTHKVNSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEIEGYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRKTGKNISEAGFSNVDSRQVVLSTASLINPHIIGIARN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70438" e_stop="70658"/>
            <exon e_start="71609" e_stop="71704"/>
            <exon e_start="71812" e_stop="72023"/>
            <exon e_start="73024" e_stop="73120"/>
            <exon e_start="74052" e_stop="74114"/>
            <exon e_start="74213" e_stop="74718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.819"/>
          <exon-intron don_prob="0.979" acc_prob="0.483" e_score="0.948"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.972"/>
          <exon-intron don_prob="0.887" acc_prob="0.954" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.132" e_score="0.968"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.819">
            <gDNA_exon_boundary e_start="70438" e_stop="70658" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="70659" i_stop="71608" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="71609" e_stop="71704" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.483">
            <gDNA_intron_boundary i_start="71705" i_stop="71811" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="71812" e_stop="72023" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72024" i_stop="73023" i_length="1000"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="73024" e_stop="73120" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.887" acc_prob="0.954">
            <gDNA_intron_boundary i_start="73121" i_stop="74051" i_length="931"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="74052" e_stop="74114" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.132">
            <gDNA_intron_boundary i_start="74115" i_stop="74212" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.919">
            <gDNA_exon_boundary e_start="74213" e_stop="74718" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70438" stop="70658"/>
              <exon start="71609" stop="71704"/>
              <exon start="71812" stop="72023"/>
              <exon start="73024" stop="73116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70438" stop="70658"/>
              <exon start="71609" stop="71704"/>
              <exon start="71812" stop="72023"/>
              <exon start="73024" stop="73080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71968" stop="72023"/>
              <exon start="73024" stop="73120"/>
              <exon start="74052" stop="74114"/>
              <exon start="74213" stop="74718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423477" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATTCATCTGTTTCTGAAAGCACAACTCCAAAAGATGTCCCCTTTCATTCTCAAATGCAAAATGAGTTGAAGAAAAGGGTTAAAGACCCTTTGTGTAGTAGTAACAAATTTTGCTTTTGCTGCACTAGAAGACACTTTATGGCTGCACTAGGAGCAGCTGCTCTATTGCCTATTCATCCTTCACATGCTTCTGATGTTTCATCTCCTGCTAATCCCATG : GCTATGTTGAATAGGTTGCATCCTCCAAGGCCAGATTGGTACGAGGAGTTTTATGCAACAGCCATGAACACAAGTATGAAATCTTACGAAGCTGAG : GTTACAAGTCAGAGCTTTTTGCTAATCTAAGAGGTCAGGCCAAACAAATCCTCGAAATTGGCATTGGGACAGGCCCAAATTTGAAATATTATGCCAGTGAGGGGGGCACTTCCGTTTATGGCGTCGATCCAAACAGAAAGATGGAGAAATATGCACAAGCAGCAGCAGAGACTGCAGGCCTTCCAGCTGCGAATTTCAAATTCCTGCATGCA : GTTTCTGAGTCCTTGCCATTACGTGATGCTTCAGTTGATGCTGTCATTGGCACTCTTGTATTATGTTCTGTCTCAGATGTTAATCTGACACTGCAGG : AGGTCAGAAGGGTGCTCAAGCCTGGTGGTATTTACCTCTTTGTTGAACATGTGGCTGCAGCAG : ATGGTACAGCTCTCAGATTTGTTCAGGGATTGCTCGATCCGTTGCAGCAGGCTGTTGCAGATGGTTGTCATTTTACCAGGAAAACAGGAAAGAATATATCTGAAGCCGGTTTCTCAAATGTAGATAGTCGTCAAGTAGTATTATCAACTGCCTCTCTGATAAATCCTCATATCATTGGCATAGCTCGCAACTAGATACATATATATCCAAGTATTTTCAATGGTGTCTTTGCGAATCTTTAGCTCATGATCTTGAAGCTTCTCCACAACATATTTCAACCGGCTAGTTATATTGCCTCCGAACAACAAGGGCACAACAGCTACAGTACAATTATGCATCATCATTTACAAGTAAAGAGATGAGTTTTTATTCTTATTTTGTATAATAACATTGGCTTGATTAAAAAGAGTGACATAGTCGGTGAGGATTTATATAGCCAACTCCAACTTGTTCGGGATTGAGGTGTTGTAGTAGTTATTGTTGTTTTATTGTTCCTTCAAAGAGAT</gDNA_template>
            <first_frame> *  I  H  L  F  L  K  A  Q  L  Q  K  M  S  P  F  I  L  K  C  K  M  S  *  R  K  G  L  K  T  L  C  V  V  V  T  N  F  A  F  A  A  L  E  D  T  L  W  L  H  *  E  Q  L  L  Y  C  L  F  I  L  H  M  L  L  M  F  H  L  L  L  I  P  W :   L  C  *  I  G  C  I  L  Q  G  Q  I  G  T  R  S  F  M  Q  Q  P  *  T  Q  V  *  N  L  T  K  L  R :   L  Q  V  R  A  F  C  *  S  K  R  S  G  Q  T  N  P  R  N  W  H  W  D  R  P  K  F  E  I  L  C  Q  *  G  G  H  F  R  L  W  R  R  S  K  Q  K  D  G  E  I  C  T  S  S  S  R  D  C  R  P  S  S  C  E  F  Q  I  P  A  C   : S  F  *  V  L  A  I  T  *  C  F  S  *  C  C  H  W  H  S  C  I  M  F  C  L  R  C  *  S  D  T  A  G :   G  Q  K  G  A  Q  A  W  W  Y  L  P  L  C  *  T  C  G  C  S  R :   W  Y  S  S  Q  I  C  S  G  I  A  R  S  V  A  A  G  C  C  R  W  L  S  F  Y  Q  E  N  R  K  E  Y  I  *  S  R  F  L  K  C  R  *  S  S  S  S  I  I  N  C  L  S  D  K  S  S  Y  H  W  H  S  S  Q  L  D  T  Y  I  S  K  Y  F  Q  W  C  L  C  E  S  L  A  H  D  L  E  A  S  P  Q  H  I  S  T  G  *  L  Y  C  L  R  T  T  R  A  Q  Q  L  Q  Y  N  Y  A  S  S  F  T  S  K  E  M  S  F  Y  S  Y  F  V  *  *  H  W  L  D  *  K  E  *  H  S  R  *  G  F  I  *  P  T  P  T  C  S  G  L  R  C  C  S  S  Y  C  C  F  I  V  P  S  K  R  </first_frame>
            <second_frame>  E  F  I  C  F  *  K  H  N  S  K  R  C  P  L  S  F  S  N  A  K  *  V  E  E  K  G  *  R  P  F  V  *  *  *  Q  I  L  L  L  L  H  *  K  T  L  Y  G  C  T  R  S  S  C  S  I  A  Y  S  S  F  T  C  F  *  C  F  I  S  C  *  S  H   : G  Y  V  E  *  V  A  S  S  K  A  R  L  V  R  G  V  L  C  N  S  H  E  H  K  Y  E  I  L  R  S  *   : G  Y  K  S  E  L  F  A  N  L  R  G  Q  A  K  Q  I  L  E  I  G  I  G  T  G  P  N  L  K  Y  Y  A  S  E  G  G  T  S  V  Y  G  V  D  P  N  R  K  M  E  K  Y  A  Q  A  A  A  E  T  A  G  L  P  A  A  N  F  K  F  L  H  A  :  V  S  E  S  L  P  L  R  D  A  S  V  D  A  V  I  G  T  L  V  L  C  S  V  S  D  V  N  L  T  L  Q   : E  V  R  R  V  L  K  P  G  G  I  Y  L  F  V  E  H  V  A  A  A   : D  G  T  A  L  R  F  V  Q  G  L  L  D  P  L  Q  Q  A  V  A  D  G  C  H  F  T  R  K  T  G  K  N  I  S  E  A  G  F  S  N  V  D  S  R  Q  V  V  L  S  T  A  S  L  I  N  P  H  I  I  G  I  A  R  N  *  I  H  I  Y  P  S  I  F  N  G  V  F  A  N  L  *  L  M  I  L  K  L  L  H  N  I  F  Q  P  A  S  Y  I  A  S  E  Q  Q  G  H  N  S  Y  S  T  I  M  H  H  H  L  Q  V  K  R  *  V  F  I  L  I  L  Y  N  N  I  G  L  I  K  K  S  D  I  V  G  E  D  L  Y  S  Q  L  Q  L  V  R  D  *  G  V  V  V  V  I  V  V  L  L  F  L  Q  R  D </second_frame>
            <third_frame>   N  S  S  V  S  E  S  T  T  P  K  D  V  P  F  H  S  Q  M  Q  N  E  L  K  K  R  V  K  D  P  L  C  S  S  N  K  F  C  F  C  C  T  R  R  H  F  M  A  A  L  G  A  A  A  L  L  P  I  H  P  S  H  A  S  D  V  S  S  P  A  N  P  M  :  A  M  L  N  R  L  H  P  P  R  P  D  W  Y  E  E  F  Y  A  T  A  M  N  T  S  M  K  S  Y  E  A  E  :  V  T  S  Q  S  F  L  L  I  *  E  V  R  P  N  K  S  S  K  L  A  L  G  Q  A  Q  I  *  N  I  M  P  V  R  G  A  L  P  F  M  A  S  I  Q  T  E  R  W  R  N  M  H  K  Q  Q  Q  R  L  Q  A  F  Q  L  R  I  S  N  S  C  M  Q :   F  L  S  P  C  H  Y  V  M  L  Q  L  M  L  S  L  A  L  L  Y  Y  V  L  S  Q  M  L  I  *  H  C  R  :  R  S  E  G  C  S  S  L  V  V  F  T  S  L  L  N  M  W  L  Q  Q  :  M  V  Q  L  S  D  L  F  R  D  C  S  I  R  C  S  R  L  L  Q  M  V  V  I  L  P  G  K  Q  E  R  I  Y  L  K  P  V  S  Q  M  *  I  V  V  K  *  Y  Y  Q  L  P  L  *  *  I  L  I  S  L  A  *  L  A  T  R  Y  I  Y  I  Q  V  F  S  M  V  S  L  R  I  F  S  S  *  S  *  S  F  S  T  T  Y  F  N  R  L  V  I  L  P  P  N  N  K  G  T  T  A  T  V  Q  L  C  I  I  I  Y  K  *  R  D  E  F  L  F  L  F  C  I  I  T  L  A  *  L  K  R  V  T  *  S  V  R  I  Y  I  A  N  S  N  L  F  G  I  E  V  L  *  *  L  L  L  F  Y  C  S  F  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71704" stop="72023"/>
                    <exon start="73024" stop="73120"/>
                    <exon start="74052" stop="74114"/>
                    <exon start="74213" stop="74406"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYKSELFANLRGQAKQILEIGIGTGPNLKYYASEGGTSVYGVDPNRKMEKYAQAAAETAGLPAANFKFLHAVSESLPLRDASVDAVIGTLVLCSVSDVNLTLQEVRRVLKPGGIYLFVEHVAAADGTALRFVQGLLDPLQQAVADGCHFTRKTGKNISEAGFSNVDSRQVVLSTASLINPHIIGIARN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70440" stop="70658"/>
                    <exon start="71609" stop="71704"/>
                    <exon start="71812" stop="71841"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSVSESTTPKDVPFHSQMQNELKKRVKDPLCSSNKFCFCCTRRHFMAALGAAALLPIHPSHASDVSSPANPMAMLNRLHPPRPDWYEEFYATAMNTSMKSYEAEVTSQSFLLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="76361" PGL_stop="79245"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76361" e_stop="76616"/>
            <exon e_start="76695" e_stop="77483"/>
            <exon e_start="79229" e_stop="79245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76361" e_stop="76616" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76695" e_stop="77483" e_length="789"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77484" i_stop="79228" i_length="1745"/>
          </intron>
          <exon e_serial="3" e_score="0.941">
            <gDNA_exon_boundary e_start="79229" e_stop="79245" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76361" stop="76616"/>
              <exon start="76695" stop="77270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76374" stop="76616"/>
              <exon start="76695" stop="76827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="76919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="76882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="77166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="77064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76378" stop="76616"/>
              <exon start="76695" stop="77050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76378" stop="76616"/>
              <exon start="76695" stop="77029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76616"/>
              <exon start="76695" stop="77281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76616"/>
              <exon start="76695" stop="77128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76616"/>
              <exon start="76695" stop="77115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76380" stop="76616"/>
              <exon start="76695" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76380" stop="76616"/>
              <exon start="76695" stop="76941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76381" stop="76616"/>
              <exon start="76695" stop="77197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76382" stop="76616"/>
              <exon start="76695" stop="76985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76616"/>
              <exon start="76695" stop="77134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76616"/>
              <exon start="76695" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="77221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="76977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="76805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76387" stop="76616"/>
              <exon start="76695" stop="77135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76388" stop="76616"/>
              <exon start="76695" stop="77283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76388" stop="76616"/>
              <exon start="76695" stop="77268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76388" stop="76616"/>
              <exon start="76695" stop="77229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="76814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76390" stop="76616"/>
              <exon start="76695" stop="76974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76392" stop="76616"/>
              <exon start="76695" stop="77346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76393" stop="76616"/>
              <exon start="76695" stop="77051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76394" stop="76616"/>
              <exon start="76695" stop="77354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76394" stop="76616"/>
              <exon start="76695" stop="77066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76397" stop="76616"/>
              <exon start="76695" stop="77483"/>
              <exon start="79229" stop="79245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76399" stop="76616"/>
              <exon start="76695" stop="77387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76401" stop="76616"/>
              <exon start="76695" stop="77261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76403" stop="76616"/>
              <exon start="76695" stop="77419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76404" stop="76616"/>
              <exon start="76695" stop="77198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76404" stop="76616"/>
              <exon start="76695" stop="77177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76404" stop="76616"/>
              <exon start="76695" stop="77134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76408" stop="76616"/>
              <exon start="76695" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76425" stop="76616"/>
              <exon start="76695" stop="77390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76438" stop="76616"/>
              <exon start="76695" stop="77057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76441" stop="76616"/>
              <exon start="76695" stop="76917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76469" stop="76616"/>
              <exon start="76695" stop="77373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76616"/>
              <exon start="76695" stop="77153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76552" stop="76616"/>
              <exon start="76695" stop="77206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="77427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76866" stop="77470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76893" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76893" stop="77479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76998" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77048" stop="77474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAA : AAAAAAAAAAAAAAAAT</gDNA_template>
            <first_frame> H  T  S  K  I  E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L   : K  K  K  K  K  N </first_frame>
            <second_frame>  I  R  A  K  *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  :  K  K  K  K  K   </second_frame>
            <third_frame>   Y  E  Q  N  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  K :   K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76413" stop="76616"/>
                    <exon start="76695" stop="77324"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76361" e_stop="76616"/>
            <exon e_start="76695" e_stop="77529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76361" e_stop="76616" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76695" e_stop="77529" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76361" stop="76616"/>
              <exon start="76695" stop="77270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76374" stop="76616"/>
              <exon start="76695" stop="76827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="77109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="76919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="76882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="77131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="77166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="77064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76378" stop="76616"/>
              <exon start="76695" stop="77050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76378" stop="76616"/>
              <exon start="76695" stop="77029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76616"/>
              <exon start="76695" stop="77281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76616"/>
              <exon start="76695" stop="77128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76616"/>
              <exon start="76695" stop="77115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76380" stop="76616"/>
              <exon start="76695" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76380" stop="76616"/>
              <exon start="76695" stop="76941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76381" stop="76616"/>
              <exon start="76695" stop="77197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76382" stop="76616"/>
              <exon start="76695" stop="76985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76616"/>
              <exon start="76695" stop="77134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76616"/>
              <exon start="76695" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="77221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="76977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="76805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76387" stop="76616"/>
              <exon start="76695" stop="77135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76388" stop="76616"/>
              <exon start="76695" stop="77283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76388" stop="76616"/>
              <exon start="76695" stop="77268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76388" stop="76616"/>
              <exon start="76695" stop="77229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="77115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="76814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76390" stop="76616"/>
              <exon start="76695" stop="76974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76392" stop="76616"/>
              <exon start="76695" stop="77346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76393" stop="76616"/>
              <exon start="76695" stop="77051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76394" stop="76616"/>
              <exon start="76695" stop="77354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76394" stop="76616"/>
              <exon start="76695" stop="77066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76399" stop="76616"/>
              <exon start="76695" stop="77387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76401" stop="76616"/>
              <exon start="76695" stop="77261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76403" stop="76616"/>
              <exon start="76695" stop="77419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76404" stop="76616"/>
              <exon start="76695" stop="77198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76404" stop="76616"/>
              <exon start="76695" stop="77177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76404" stop="76616"/>
              <exon start="76695" stop="77134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76408" stop="76616"/>
              <exon start="76695" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76425" stop="76616"/>
              <exon start="76695" stop="77390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76438" stop="76616"/>
              <exon start="76695" stop="77057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76441" stop="76616"/>
              <exon start="76695" stop="76917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76469" stop="76616"/>
              <exon start="76695" stop="77373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76616"/>
              <exon start="76695" stop="77153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76552" stop="76616"/>
              <exon start="76695" stop="77206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="77427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76866" stop="77470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76893" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76893" stop="77479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76928" stop="77529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76998" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77048" stop="77474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAG</gDNA_template>
            <first_frame> H  T  S  K  I  E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L  I  I  F  S  *  L  L  L  L  L  L  Y  Q  F  *   </first_frame>
            <second_frame>  I  R  A  K  *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  L  S  S  L  N  Y  Y  Y  Y  Y  Y  T  N  F  K  </second_frame>
            <third_frame>   Y  E  Q  N  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  N  Y  L  L  L  I  I  I  I  I  I  I  P  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76413" stop="76616"/>
                    <exon start="76695" stop="77324"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76374" e_stop="76616"/>
            <exon e_start="76695" e_stop="77005"/>
            <exon e_start="77071" e_stop="77243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.145" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76374" e_stop="76616" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.145">
            <gDNA_intron_boundary i_start="76617" i_stop="76694" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76695" e_stop="77005" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77006" i_stop="77070" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="77071" e_stop="77243" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76374" stop="76616"/>
              <exon start="76695" stop="76827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="76919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76375" stop="76616"/>
              <exon start="76695" stop="76882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76616"/>
              <exon start="76695" stop="76856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76616"/>
              <exon start="76695" stop="76755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76380" stop="76616"/>
              <exon start="76695" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76380" stop="76616"/>
              <exon start="76695" stop="76941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76382" stop="76616"/>
              <exon start="76695" stop="76985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76616"/>
              <exon start="76695" stop="76952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="76977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76385" stop="76616"/>
              <exon start="76695" stop="76805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76389" stop="76616"/>
              <exon start="76695" stop="76814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76390" stop="76616"/>
              <exon start="76695" stop="76974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76395" stop="76616"/>
              <exon start="76695" stop="77005"/>
              <exon start="77071" stop="77243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76408" stop="76616"/>
              <exon start="76695" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76441" stop="76616"/>
              <exon start="76695" stop="76917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAG : ATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGC : CAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAA</gDNA_template>
            <first_frame> *  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  :  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A :   K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  </first_frame>
            <second_frame>  R  N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R :   *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R   : P  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K </second_frame>
            <third_frame>   E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *   : D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  :  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76413" stop="76616"/>
                    <exon start="76695" stop="77005"/>
                    <exon start="77071" stop="77080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="76376" e_stop="77529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="76376" e_stop="77529" e_length="1154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="77167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76376" stop="76542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76379" stop="76613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76383" stop="76583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76786" stop="77427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76866" stop="77470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76893" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76893" stop="77479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76928" stop="77529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76998" stop="77482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77048" stop="77474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGTTGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAAAGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGGTAAAATTGGTTATAGATTTGTTATTAGTCGAAGTTGTTGTTTAATTTGCCGATCAGCTAACTTGAAATGCTATGCAGATGATTAAGGAAGCGATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTTCAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAAGGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCCAAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGCTGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGCGGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGCACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGGAAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAATTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAATTATCTTCTCTTAATTATTATTATTATTATTATACCAATTTTAAAG</gDNA_template>
            <first_frame> E  I  L  V  V  L  Q  I  L  E  T  L  I  I  I  F  C  K  D  G  D  *  R  A  G  C  S  N  R  A  C  E  *  T  D  G  R  S  *  T  C  D  G  R  K  S  T  G  G  D  *  *  T  K  E  R  E  G  D  Q  G  E  K  I  I  C  S  E  E  E  K  S  S  D  S  S  F  L  L  *  G  K  I  G  Y  R  F  V  I  S  R  S  C  C  L  I  C  R  S  A  N  L  K  C  Y  A  D  D  *  G  S  D  C  N  I  E  G  *  N  W  I  E  S  V  C  D  H  K  V  H  *  R  *  A  E  K  S  S  I  K  F  Q  E  N  V  A  C  S  I  E  E  A  C  G  F  W  *  T  C  Q  G  E  E  L  L  Q  A  S  S  S  K  G  S  C  S  C  S  C  *  E  K  V  H  S  *  A  K  S  S  T  G  K  E  G  H  Q  G  K  A  E  A  K  T  K  G  C  C  S  K  G  Q  N  C  Y  Q  I  K  S  *  A  K  A  C  C  C  C  Q  S  *  T  S  C  K  A  *  G  S  C  S  K  A  E  S  S  C  K  A  *  S  P  C  K  S  *  G  C  C  K  A  K  S  G  *  *  E  A  S  *  G  S  K  D  I  Y  *  V  D  S  V  E  E  S  C  T  E  A  S  C  E  K  G  T  G  E  E  C  E  I  *  D  R  E  V  A  G  E  E  S  I  R  Q  E  G  K  E  V  I  E  C  R  R  K  G  S  I  V  N  F  L  D  L  C  G  W  F  V  S  A  A  Q  Y  R  K  *  Y  F  K  F  Q  L  *  F  S  F  F  L  F  Y  I  I  I  H  F  S  *  V  Y  A  L  I  I  F  S  *  L  L  L  L  L  L  Y  Q  F  *   </first_frame>
            <second_frame>  K  F  *  *  F  Y  R  S  *  K  P  *  L  L  Y  S  V  K  M  A  T  E  E  P  V  V  A  I  E  P  V  N  E  P  M  V  V  A  E  P  A  T  E  E  N  P  P  A  E  T  D  E  P  K  K  E  K  E  I  K  A  K  K  S  S  A  P  R  K  R  N  P  P  T  H  P  S  Y  F  E  V  K  L  V  I  D  L  L  L  V  E  V  V  V  *  F  A  D  Q  L  T  *  N  A  M  Q  M  I  K  E  A  I  V  T  L  K  D  K  T  G  S  S  Q  Y  A  I  T  K  F  I  E  D  K  Q  K  N  L  P  S  N  F  R  K  M  L  L  A  Q  L  K  K  L  V  A  S  G  K  L  V  K  V  K  S  S  Y  K  L  P  A  P  K  A  A  A  P  A  L  A  K  K  K  S  I  A  K  P  K  A  A  Q  A  K  K  A  T  K  A  K  P  K  P  K  P  K  V  A  A  P  K  A  K  T  A  T  K  S  K  A  K  P  K  P  V  V  A  A  K  A  K  P  A  A  K  P  K  A  V  V  A  K  P  K  A  A  V  K  P  K  A  P  V  K  A  K  A  A  V  K  P  K  A  A  N  E  K  P  A  K  V  A  R  T  S  T  R  S  T  P  S  R  K  A  A  P  K  P  A  V  K  K  A  P  V  K  S  V  K  S  K  T  V  K  S  P  A  K  K  A  S  A  R  K  A  K  K  *  S  N  V  G  G  R  V  A  L  *  I  S  W  I  F  V  G  G  L  Y  L  R  P  N  I  E  N  S  I  L  N  S  S  C  N  F  R  F  F  Y  F  I  *  *  S  I  L  V  E  F  M  L  *  L  S  S  L  N  Y  Y  Y  Y  Y  Y  T  N  F  K  </second_frame>
            <third_frame>   N  S  S  S  S  T  D  L  R  N  P  N  Y  Y  I  L  *  R  W  R  L  K  S  R  L  *  Q  S  S  L  *  M  N  R  W  S  *  L  N  L  R  R  K  K  I  H  R  R  R  L  M  N  Q  R  K  R  R  R  S  R  R  K  N  H  L  L  R  G  R  E  I  L  R  L  I  L  P  T  L  R  *  N  W  L  *  I  C  Y  *  S  K  L  L  F  N  L  P  I  S  *  L  E  M  L  C  R  *  L  R  K  R  L  *  H  *  R  I  K  L  D  R  V  S  M  R  S  Q  S  S  L  K  I  S  R  K  I  F  H  Q  I  S  G  K  C  C  L  L  N  *  R  S  L  W  L  L  V  N  L  S  R  *  R  A  P  T  S  F  Q  L  Q  R  Q  L  L  L  L  L  L  R  K  S  P  *  L  S  Q  K  Q  H  R  Q  R  R  P  P  R  Q  S  R  S  Q  N  Q  R  L  L  L  Q  R  P  K  L  L  P  N  Q  K  L  S  Q  S  L  L  L  L  P  K  L  N  Q  L  Q  S  L  R  Q  L  *  Q  S  R  K  Q  L  *  S  L  K  P  L  *  K  L  R  L  L  *  S  Q  K  R  L  M  R  S  Q  L  R  *  Q  G  H  L  L  G  R  L  R  R  G  K  L  H  R  S  Q  L  *  K  R  H  R  *  R  V  *  N  L  R  P  *  S  R  R  R  R  K  H  P  P  G  R  Q  R  S  D  R  M  *  E  E  G  *  H  C  K  F  L  G  S  L  W  V  V  C  I  C  G  P  I  *  K  I  V  F  *  I  P  V  V  I  F  V  F  F  I  L  Y  N  N  P  F  *  L  S  L  C  S  N  Y  L  L  L  I  I  I  I  I  I  I  P  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76683" stop="77324"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAMQMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPAVKKAPVKSVKSKTVKSPAKKASARKAKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76413" stop="76661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSVKMATEEPVVAIEPVNEPMVVAEPATEENPPAETDEPKKEKEIKAKKSSAPRKRNPPTHPSYFEVKLVIDLLLVEVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="78487" PGL_stop="76690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78487" e_stop="78465"/>
            <exon e_start="77490" e_stop="77018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.652">
            <gDNA_exon_boundary e_start="78487" e_stop="78465" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78464" i_stop="77491" i_length="974"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="77490" e_stop="77018" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78487" stop="78465"/>
              <exon start="77490" stop="77018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348684" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAAATTTTTGTTAATATTTT : AAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTG</gDNA_template>
            <first_frame> F  K  I  F  V  N  I  L :   R  *  L  E  H  K  L  N  *  N  G  L  L  Y  K  I  K  K  T  K  I  T  T  G  I  *  N  T  I  F  Y  I  G  P  Q  I  Q  T  T  H  K  D  P  R  N  L  Q  C  Y  P  S  S  Y  I  R  S  L  L  C  L  P  G  G  C  F  L  R  R  R  L  H  G  L  R  F  H  T  L  H  R  C  L  F  H  S  W  L  R  C  S  F  P  R  R  S  R  P  S  R  C  P  C  Y  L  S  W  L  L  I  S  R  F  W  L  Y  S  S  L  S  F  Y  R  G  F  R  L  Y  S  C  F  R  L  C  Y  N  C  L  R  L  C  S  W  F  S  F  G  S  N  N  R  L  W  L  S  F  *  F  </first_frame>
            <second_frame>  L  K  F  L  L  I  F   : *  D  N  *  S  I  N  S  T  K  M  D  Y  Y  I  K  *  K  K  R  K  L  Q  L  E  F  K  I  L  F  S  I  L  G  R  R  Y  K  P  P  T  K  I  Q  E  I  Y  N  A  T  L  P  P  T  F  D  H  F  F  A  F  L  A  D  A  F  F  A  G  D  F  T  V  L  D  F  T  L  F  T  G  A  F  F  T  A  G  F  G  A  A  F  L  D  G  V  D  L  V  D  V  L  A  T  L  A  G  F  S  L  A  A  F  G  F  T  A  A  L  A  F  T  G  A  L  G  F  T  A  A  F  G  F  A  T  T  A  L  G  F  A  A  G  L  A  L  A  A  T  T  G  F  G  L  A  F  D  L </second_frame>
            <third_frame>   *  N  F  C  *  Y  F  :  K  I  I  R  A  *  T  Q  L  K  W  I  I  I  *  N  K  K  N  E  N  Y  N  W  N  L  K  Y  Y  F  L  Y  W  A  A  D  T  N  H  P  Q  R  S  K  K  F  T  M  L  P  F  L  L  H  S  I  T  S  L  P  S  W  R  M  L  S  S  P  A  T  S  R  S  *  I  S  H  S  S  P  V  P  F  S  Q  L  A  S  V  Q  L  S  S  T  E  S  T  *  *  M  S  L  L  P  *  L  A  S  H  *  P  L  L  A  L  Q  Q  P  *  L  L  Q  G  L  *  A  L  Q  L  L  S  A  L  L  Q  L  P  *  A  L  Q  L  V  *  L  W  Q  Q  Q  Q  A  L  A  *  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77440" stop="77018"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKLQLEFKILFSILGRRYKPPTKIQEIYNATLPPTFDHFFAFLADAFFAGDFTVLDFTLFTGAFFTAGFGAAFLDGVDLVDVLATLAGFSLAAFGFTAALAFTGALGFTAAFGFATTALGFAAGLALAATTGFGLAFDL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77411" stop="77022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTIFYIGPQIQTTHKDPRNLQCYPSSYIRSLLCLPGGCFLRRRLHGLRFHTLHRCLFHSWLRCSFPRRSRPSRCPCYLSWLLISRFWLYSSLSFYRGFRLYSCFRLCYNCLRLCSWFSFGSNNRLWLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77495" e_stop="76690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="77495" e_stop="76690" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77495" stop="76690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGAAGATAATTAGAGCATAAACTCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAGCTGCTTTCGGCTTTGCTACAACTGCCTTAGGCTTTGCAGCTGGTTTAGCTTTGGCAGCAACAACAGGCTTTGGCTTAGCTTTTGATTTGGTAGCAGTTTTGGCCTTTGGAGCAGCAACCTTTGGTTTTGGCTTCGGCTTTGCCTTGGTGGCCTTCTTTGCCTGTGCTGCTTTTGGCTTAGCTATGGACTTTTTCTTAGCAAGAGCAGGAGCAGCTGCCTTTGGAGCTGGAAGCTTGTAGGAGCTCTTCACCTTGACAAGTTTACCAGAAGCCACAAGCTTCTTCAATTGAGCAAGCAACATTTTCCTGAAATTTGATGGAAGATTTTTCTGCTTATCTTCAATGAACTTTGTGATCGCATACTGACTCGATCCAGTTTTATCCTTCAATGTTACAATCGCTTCCTTAATCATCTGCA</gDNA_template>
            <first_frame> K  R  R  *  L  E  H  K  L  N  *  N  G  L  L  Y  K  I  K  K  T  K  I  T  T  G  I  *  N  T  I  F  Y  I  G  P  Q  I  Q  T  T  H  K  D  P  R  N  L  Q  C  Y  P  S  S  Y  I  R  S  L  L  C  L  P  G  G  C  F  L  R  R  R  L  H  G  L  R  F  H  T  L  H  R  C  L  F  H  S  W  L  R  C  S  F  P  R  R  S  R  P  S  R  C  P  C  Y  L  S  W  L  L  I  S  R  F  W  L  Y  S  S  L  S  F  Y  R  G  F  R  L  Y  S  C  F  R  L  C  Y  N  C  L  R  L  C  S  W  F  S  F  G  S  N  N  R  L  W  L  S  F  *  F  G  S  S  F  G  L  W  S  S  N  L  W  F  W  L  R  L  C  L  G  G  L  L  C  L  C  C  F  W  L  S  Y  G  L  F  L  S  K  S  R  S  S  C  L  W  S  W  K  L  V  G  A  L  H  L  D  K  F  T  R  S  H  K  L  L  Q  L  S  K  Q  H  F  P  E  I  *  W  K  I  F  L  L  I  F  N  E  L  C  D  R  I  L  T  R  S  S  F  I  L  Q  C  Y  N  R  F  L  N  H  L   </first_frame>
            <second_frame>  R  E  D  N  *  S  I  N  S  T  K  M  D  Y  Y  I  K  *  K  K  R  K  L  Q  L  E  F  K  I  L  F  S  I  L  G  R  R  Y  K  P  P  T  K  I  Q  E  I  Y  N  A  T  L  P  P  T  F  D  H  F  F  A  F  L  A  D  A  F  F  A  G  D  F  T  V  L  D  F  T  L  F  T  G  A  F  F  T  A  G  F  G  A  A  F  L  D  G  V  D  L  V  D  V  L  A  T  L  A  G  F  S  L  A  A  F  G  F  T  A  A  L  A  F  T  G  A  L  G  F  T  A  A  F  G  F  A  T  T  A  L  G  F  A  A  G  L  A  L  A  A  T  T  G  F  G  L  A  F  D  L  V  A  V  L  A  F  G  A  A  T  F  G  F  G  F  G  F  A  L  V  A  F  F  A  C  A  A  F  G  L  A  M  D  F  F  L  A  R  A  G  A  A  A  F  G  A  G  S  L  *  E  L  F  T  L  T  S  L  P  E  A  T  S  F  F  N  *  A  S  N  I  F  L  K  F  D  G  R  F  F  C  L  S  S  M  N  F  V  I  A  Y  *  L  D  P  V  L  S  F  N  V  T  I  A  S  L  I  I  C  </second_frame>
            <third_frame>   E  K  I  I  R  A  *  T  Q  L  K  W  I  I  I  *  N  K  K  N  E  N  Y  N  W  N  L  K  Y  Y  F  L  Y  W  A  A  D  T  N  H  P  Q  R  S  K  K  F  T  M  L  P  F  L  L  H  S  I  T  S  L  P  S  W  R  M  L  S  S  P  A  T  S  R  S  *  I  S  H  S  S  P  V  P  F  S  Q  L  A  S  V  Q  L  S  S  T  E  S  T  *  *  M  S  L  L  P  *  L  A  S  H  *  P  L  L  A  L  Q  Q  P  *  L  L  Q  G  L  *  A  L  Q  L  L  S  A  L  L  Q  L  P  *  A  L  Q  L  V  *  L  W  Q  Q  Q  Q  A  L  A  *  L  L  I  W  *  Q  F  W  P  L  E  Q  Q  P  L  V  L  A  S  A  L  P  W  W  P  S  L  P  V  L  L  L  A  *  L  W  T  F  S  *  Q  E  Q  E  Q  L  P  L  E  L  E  A  C  R  S  S  S  P  *  Q  V  Y  Q  K  P  Q  A  S  S  I  E  Q  A  T  F  S  *  N  L  M  E  D  F  S  A  Y  L  Q  *  T  L  *  S  H  T  D  S  I  Q  F  Y  P  S  M  L  Q  S  L  P  *  S  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77440" stop="76868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKLQLEFKILFSILGRRYKPPTKIQEIYNATLPPTFDHFFAFLADAFFAGDFTVLDFTLFTGAFFTAGFGAAFLDGVDLVDVLATLAGFSLAAFGFTAALAFTGALGFTAAFGFATTALGFAAGLALAATTGFGLAFDLVAVLAFGAATFGFGFGFALVAFFACAAFGLAMDFFLARAGAAAFGAGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78483" e_stop="78465"/>
            <exon e_start="77470" e_stop="77107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.632"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.632">
            <gDNA_exon_boundary e_start="78483" e_stop="78465" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78464" i_stop="77471" i_length="994"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="77470" e_stop="77107" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78483" stop="78465"/>
              <exon start="77470" stop="77107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711545" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTTGTTAATATTTT : TCAACTAAAATGGATTATTATATAAAATAAAAAAAACGAAAATTACAACTGGAATTTAAAATACTATTTTCTATATTGGGCCGCAGATACAAACCACCCACAAAGATCCAAGAAATTTACAATGCTACCCTTCCTCCTACATTCGATCACTTCTTTGCCTTCCTGGCGGATGCTTTCTTCGCCGGCGACTTCACGGTCTTAGATTTCACACTCTTCACCGGTGCCTTTTTCACAGCTGGCTTCGGTGCAGCTTTCCTCGACGGAGTCGACCTAGTAGATGTCCTTGCTACCTTAGCTGGCTTCTCATTAGCCGCTTTTGGCTTTACAGCAGCCTTAGCTTTTACAGGGGCTTTAGGCTTTACAG</gDNA_template>
            <first_frame> K  F  L  L  I  F   : F  N  *  N  G  L  L  Y  K  I  K  K  T  K  I  T  T  G  I  *  N  T  I  F  Y  I  G  P  Q  I  Q  T  T  H  K  D  P  R  N  L  Q  C  Y  P  S  S  Y  I  R  S  L  L  C  L  P  G  G  C  F  L  R  R  R  L  H  G  L  R  F  H  T  L  H  R  C  L  F  H  S  W  L  R  C  S  F  P  R  R  S  R  P  S  R  C  P  C  Y  L  S  W  L  L  I  S  R  F  W  L  Y  S  S  L  S  F  Y  R  G  F  R  L  Y   </first_frame>
            <second_frame>  N  F  C  *  Y  F  :  S  T  K  M  D  Y  Y  I  K  *  K  K  R  K  L  Q  L  E  F  K  I  L  F  S  I  L  G  R  R  Y  K  P  P  T  K  I  Q  E  I  Y  N  A  T  L  P  P  T  F  D  H  F  F  A  F  L  A  D  A  F  F  A  G  D  F  T  V  L  D  F  T  L  F  T  G  A  F  F  T  A  G  F  G  A  A  F  L  D  G  V  D  L  V  D  V  L  A  T  L  A  G  F  S  L  A  A  F  G  F  T  A  A  L  A  F  T  G  A  L  G  F  T  </second_frame>
            <third_frame>   I  F  V  N  I  F :   Q  L  K  W  I  I  I  *  N  K  K  N  E  N  Y  N  W  N  L  K  Y  Y  F  L  Y  W  A  A  D  T  N  H  P  Q  R  S  K  K  F  T  M  L  P  F  L  L  H  S  I  T  S  L  P  S  W  R  M  L  S  S  P  A  T  S  R  S  *  I  S  H  S  S  P  V  P  F  S  Q  L  A  S  V  Q  L  S  S  T  E  S  T  *  *  M  S  L  L  P  *  L  A  S  H  *  P  L  L  A  L  Q  Q  P  *  L  L  Q  G  L  *  A  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77440" stop="77108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKLQLEFKILFSILGRRYKPPTKIQEIYNATLPPTFDHFFAFLADAFFAGDFTVLDFTLFTGAFFTAGFGAAFLDGVDLVDVLATLAGFSLAAFGFTAALAFTGALGFT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0098L02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77411" stop="77109"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTIFYIGPQIQTTHKDPRNLQCYPSSYIRSLLCLPGGCFLRRRLHGLRFHTLHRCLFHSWLRCSFPRRSRPSRCPCYLSWLLISRFWLYSSLSFYRGFRLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 201 chains have been computed
$ 
$ memory statistics:
$ 978040 bytes spliced alignments in total
$ 135 spliced alignments have been stored
$ 7244 bytes was the average size of a spliced alignment
$ 21808 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 2180 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 304 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:49:43
-->
