<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:29:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745548" ref_strand="+" ref_description="SGN-E745548 [GI|47105906]">
      <seq>gggggttaagagatagaatcagggccagattattcaaaatgggatgataataaagcatacacttgaagttgatgctgcttcattttgcaccttcttgaggcaaaactcatgaaggaacaaaaccccaaaaaagaattattcaaaaagctgaaatcttgatttttcttttttttgattcattttcattctatgttggattgaatttttcagggtttgtgtggtgaagttttttttttttttcaaatttaaatttttagtctccgatggagcctcgtgttggtaataagttcaggcttggccggaaaattggtagcggttcttttggggagatctacctcggtggtaatgttcaaactaatgaagaggttgctatcaagctggaaaatgtgaaaacaaagcatcctcaactgttgtacgaagcaaagctgtataaaatactacaaggaggaactggagtccccaatttaaaatggtttggagttgaaggagattacaatgtccttgtgatggatttactgggacctagtcttgaagatcttttcaacttctgcaataggaaaatgtccttgaagaccgttctcatgcttgcagatcagatgatcaatcgggttgagtttgttcatgccaaatcttttcttcatcgagatataaaacctgacaactttcttatgggattaggaagacgtgcaaatcaggtctatgttattgattttgggctggctaagaagtacagagactcatcaactcatcagcatattccgtatagagaaaataaaaatttgacaggaactgctagatatgcaagcatgaacactcacctcggcattgaacaaagtcgaagggatgatttggaatcattgggttttgttctgatgtactttttaagaggaagtctcccttggcaggggctgaaagcaggcaataagaaacagaagtatgagaggatcagtgagaagaaagtttcaacgtcaatagagaccttgtgtcgaggctatcctgcagagtttgcatcatattttcattactgtcgatcactgagatttgatgataaaccagattatgcttatctcaagagaattttccgtgaccttttcattcgtgaagggtttcagtttgattatgtatttgactggaccatattgaaatatcagcaatcacagcttgccaatattccatctcgtgctcttggcggtactgctgggccaagttcagggacgcctcatggtcttgctaatgtcgaaaagaaatcaggtggtgaagaaggacggccaactggttggtcttcatcaaatctgacacgtaataggagcacagggctcaatttcaatgctggaagcttattgaagcaaaaaggcacagttgctaatgatttatctgtgggtaaagagttacctagttctaattttttccggtcaagtggatcagcaaggcaacctaatgtctctagcagtcgagacccagtgattactgggggtgaacctgacctctcccgccctcagacactagatgcagcaggcgcagcatcactgcgtaaaatatttaatactacccagaagacttcaccagttgtgttttcagagcacaagcgcagctcctccacaagaaacacaaacctaaagaatttagagtctgccatcaaaggaatagagggtttaagctttcgatgatgaggtactggattagtagctctgctttgtcacaattccccctctactgtatatcttggcacagcaaacacaccaacatggcggagtatgagttttgatattagttgtttccaggaggaaccataaacaatgcaacccccgcaaactcacaaatcccagtttatgttttgtccatacagacacagttataggcacttatcgtattttttttcgtctctatctctcctgttcttgttctatcgtgttattcatatttatcttatgttgtgaattatgaagaggcccatatataattgccgatttatatggtccacgagatgtttgacgctagcagatttttttgctttggacatgagcaaactctcttttgtttcaagctatttaaatatcaatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9238" stop="1626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8939" g_stop="8601" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8600" i_stop="8502" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8501" g_stop="8461" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="380" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8460" i_stop="7466" i_length="995">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7465" g_stop="7396" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="450" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7395" i_stop="7314" i_length="82">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7313" g_stop="7165" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="599" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7164" i_stop="7091" i_length="74">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7090" g_stop="6995" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="695" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6994" i_stop="6911" i_length="84">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6910" g_stop="6840" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="766" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6839" i_stop="5517" i_length="1323">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5516" g_stop="5455" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="828" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5454" i_stop="5373" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5372" g_stop="5309" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="892" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="5308" i_stop="5217" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="5216" g_stop="5132" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="977" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="5131" i_stop="5048" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="5047" g_stop="4921" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="978" r_stop="1104" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="4781" g_stop="4699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1105" r_stop="1187" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="4625" g_stop="4562" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1188" r_stop="1251" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="4561" i_stop="4260" i_length="302">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="4259" g_stop="4123" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1388" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="4122" i_stop="2602" i_length="1521">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="2601" g_stop="1925" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1389" r_stop="2065" r_length="677" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2066" polyA_stop="2080"/>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E745548" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2065</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8939" e_stop="8601"/>
          <exon e_start="8501" e_stop="8461"/>
          <exon e_start="7465" e_stop="7396"/>
          <exon e_start="7313" e_stop="7165"/>
          <exon e_start="7090" e_stop="6995"/>
          <exon e_start="6910" e_stop="6840"/>
          <exon e_start="5516" e_stop="5455"/>
          <exon e_start="5372" e_stop="5309"/>
          <exon e_start="5216" e_stop="5132"/>
          <exon e_start="5047" e_stop="4921"/>
          <exon e_start="4781" e_stop="4699"/>
          <exon e_start="4625" e_stop="4562"/>
          <exon e_start="4259" e_stop="4123"/>
          <exon e_start="2601" e_stop="1925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTAAGAGATAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCGGTATTTGAACCCTTCATGTTTTTTATTTTTTTGCCTTTCAGGTTTTGTTTTTATTTTTAGGGTTAATTTAATTGGTGATTTGTTTATATGTTCTTCAAGGTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTGGTAAGTTGAAATTATCTCTCTGTGTGTGTTTTTATTTGTCTAAACTTGTTATAGGAGTATTGATATGTTTTTTAATTGCTAAAGCATATGGTTTTGCTATGAAAAAACTTGAGAATTTGTCATTGTTTTGATGATGGATGGTTTTTGGTTAGCAATTAAAACACAATTATATGCATGTGTTATTATCCGTGTGTTTAGTTGCTAATTATTATTAGGGTGGAAGGGGGTAGATTAAGAACAACTAGATAGATACCAGTGTAATTCTATAAGCGAGGTTTGGGCAGGGTAGGATGTATGTAGTCCTTATCCCCTACCTTTTGCCGGGAGAGGATTAAACTCAATCTTTTATAGAGAACACGTTTAGTTATATTTTATCATGCCTTCTCCGTTGCTAGTGTGGTCCTTTTCCATCGCGAAGTACTTGTAGCTGTCTTTTGATGAATGTCAGAGTAACATTGGAATCCAGGATCTTTGGTTGTTCTAATACCAAGTTAATATGAGGATGCAACACTAAACTTGAGATAATAAGTGGAGTCACCCAAAACCGTTATAAACACCCCTGCATGTTGAAGACATAATTAAGCAAATAAACTTGTGCCCGCCCTCTGATTGCTTAGATTATTAGATTAAAAAGGCTCTCACACTCAATAGGGTTTTGACCACTTGACCATTTGGTCTTATGGATCACAGTAGAGGAAATGTAACCGTTATTACCTAGCCTACAATTTGAGACTCCAAGTAGTGAATTTGCATTAACTAAAGCAAATTTGTGGTTTTGAAGAAATTGCAACAGTTTCACTGCTTACATTTGTCTTTCTAGAATTTTTTATATAAAACTTGATATCTATTGTAAACTGAAGTTTTTGCTGATACTCATGATATCATTCTACTTCTGCAAATGCTTAGTCATTCGTGAACATCCCTTCAATTATGTCATAGATGATTTTTTTAGTTTGCAAGATTAAGTTGCTGATTTTCTTATTTCTTGTACTCAGGAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAAGTAATTTCTCATCTTCATGTTGCCTGTTCTCTTCATTAACTACTCAATGTTATAAGTGGTATTTATCTTTTTATATTGGTAGCTGGAGTCCCCAATTTAAAATGGTTTGGAGTTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAAGATCTTTTCAACTTCTGCAATAGGAAAATGTCCTTGAAGACCGTTCTCATGCTTGCAGATCAGATGGTGTGTGATGTTTTGTACCACTTATTGATTCCAATTACAATTTAAAATCTCTTCTCACCCTTATCAATTTTCAGATCAATCGGGTTGAGTTTGTTCATGCCAAATCTTTTCTTCATCGAGATATAAAACCTGACAACTTTCTTATGGGATTAGGAAGACGTGCAAATCAGGTATTGGGATTAAAGCTCTTACTTTGCTGCTCAATTCACCTATTGCAGGCATGGTATCTTCATAACCACGATTTATTAATATAGGTCTATGTTATTGATTTTGGGCTGGCTAAGAAGTACAGAGACTCATCAACTCATCAGCATATTCCGTATAGGTCAGCTCCCTTGAAGCACTATGAGGTTGATATCTGTTTTGTTTAAGAAGATGAAGTACTCGAAATATGGTGTTCATGCATATGATATGCCTATAGGAGCTTTGTGTTGTGGTCTGTTTGCTCTTTCGCTATAGAGCAATAGAAAAGAGTGAATTCTTTCAGTTTGCATCATTTTTAAACTCCTATGAAATTATCCCCTCACTTTTTTTAATAATTGTGGACTTGTGGTTTCTGAGAAAAGCTTGCACACACCGAGTAATCCCATAGAGTACTTTCTACCTCCCAACAGCACAGAGCACCAGGTAACTTTGTCCACCAAGGCATAGACAGATGAGAAGAAATTACCTAGACTTAGTCTTTTGATCATGTAGTCCAAAAGCATGTGTCAGTATAGGTGCTTCCTTATTTTGTGGGGGGTTTTCTTTATGAATTAACAGGATATAAGAAGAGTAGAAACACACATTTTTATCTGTATTGCATGTAAGATAAGTCATCAAAGCTATTTAATGACTTCACAAAGGTATCAGAATGCATGAACTAGCAAATTTAATAAACTAACTTAATCTCTGTTCGGGAATAATCATATCCACTCCTTTTCACTGTTACTACTTTCATATTGTACACCTTCTCACTACTAACTTCTAGTTCGTTAATAACTATCCCTTCAATATGATCAAACTGTTTTTTGGTTTGCCTGGCACTGCTGGTCAAGACTTAAGAGGAACGAAGCGACAACTGGGTAGTTTAAACAAGAAATATTTTATCACTTCGTAAAAGACTGAAAAATTTACGGATAGGGAGAAGAAACTGATATCCTTCTTAAATTTTTTCTTTAGTTAAAGCCTTAATATCTTAACCCTTTTCATTAATAACTGTGATTAGGTTATGGCATTGGAAAATGATTATCGTTCTAGTTTCCTTCGACTGGGACAGGGAAATATCAGTAAATGATATGAAACCAGATCCTGTTGATCTTTCCCAACTGTTTTATATTTTGGTCATTCATCATACATTTAACTAATAGAAAGACTTTTTGGCATCAAAGATGCAGTGCCATCATGCTTACCATAGAGGAAGTGATCTCTCTAATTTATAGAGCTTGTGCAATTCACCGAAATTTTAACAGTGAATCTGGAGATTTTCTGTATTTTGTAAATTACAGTTGGTCATTTGTATTTCGAGCTTGTGAAGAAGTATATTTGTATGTTGAATCATTGATTAATCACATTGGATAATTGTACTCTTTATTAGTCAATTATCTTACAATGAGATCCTCCTCCAGGGCATGGATGTATGATTTATTTTCTTTTTAATGTGATACAGAGAAAATAAAAATTTGACAGGAACTGCTAGATATGCAAGCATGAACACTCACCTCGGCATTGGTGAGCTTTTCTTTTATTTTTCCAATTTGTTCCCAATTGTTTATATGGACTGTTTACTCTGTGTTTTCTATTGACCATGTAGAACAAAGTCGAAGGGATGATTTGGAATCATTGGGTTTTGTTCTGATGTACTTTTTAAGAGGAAGGTAAATATTTCTCCTTCCCTACATTTTCTTTTATTTAGTGTCTTTACTTCTCTTTCATGGTAATCTTACATTATCCTTTCAAACACATGTAGTCTCCCTTGGCAGGGGCTGAAAGCAGGCAATAAGAAACAGAAGTATGAGAGGATCAGTGAGAAGAAAGTTTCAACGTCAATAGAGGTAATTGATGCTCCTCCATTCTTCATATGCTAGCTATTTAGTTTTTTATTCACTAAATTGATACTAGTGCAAATTTTCCTATAGACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAGGTATGATCATTTTGCTTTCCATGCCTTCTCTATTTCATCTGTACATAGATGTTACAACAAGTACCTCAATGACAATGTTCACAGGATGACTTCCATTTTCCTTCCCTTTATTCTTTTTTCTTTTTCCCATCTATTTCAGGGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTTGTAAGTGACTTAAATATATTAGCTTATGGCATTGGTCTCAAAATATAAAAATGAAATGTTGATTTTGAAACAGGGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAGGTTAGTGCTCTTCTTCCCCCCTCTCCCTATTGGTTATACCCTTTCTCCTGGTTGGGATGCGTTTGGGGAAGTGTAGTACTATTGCATATAAATTCTGTGGCAACTTTACTTGTTACAAAAACGATGTGAGTGCATTTGACTTTATTCAGATATAGGACAAAAGTTCTTTTGCAATCTTGATTAGTCAAGTACCTCGGCATGAGGAATTAGATGCAGTTTCCAAAGAAGAAGTAAAAAGTTCCTGAACTTGTGTGGCAATTTCAATTTACGGAGCAATTCACCAAGTAGAGAGGATAAAGTGTGCAATCTCTTTGAATAAAATTTTCTTGAATCAATTTTACATTTTATGTTATCCTGAAAATAATTTGATGGATAGCAGGTAGGCTGCATTTCTCCTTTCTCAAAAAAAAAAAAAACGAAGAAGAAAAAGAACAAGAAAAAAAGGGTAGGCTGCAACTCTTTCTGGTGCTCTAGGCTTTTATTTTGGGTGAGGGGATACAGAATAGATGTGTAAGGATGGAAGTGGAATAATGAGAGGATGAAATGTTGTGCAGCGAGCTCTCACGTGGGTACTTTGGAGGGACAGAAACAAGAGATTTTGGAAGCAAAGGAAGATGACTTCATAAAGCTTAGGGTTTTTCTTTCATTTTGCTCAACTTTTGGATTGCCCACGGAGTTCCTACATAGATGATTGAGAGTCTTTAATAAAGAACCATGTTTTATGAACCTATTCTGCTTATGGATTATCTGTCACACACTGTTCCCAAGAACTGCCAAAGTCAAAACAGCAAAATTCTTGGATCATATCAATGGGTGCACAACTGCATGTTTCTCTGGACCATCATAGTGTACTTGCACATATCTATTCAGAGGAAGGTCTTTTCATAATGGATGATCCTCAAAACTATAATGTAGATGATTGATGGAAGAAATATGAAACATATCCAAAATTCTCGCTGATGGAAATAGACCCGACACAGATATCTCTTGTATACTGGGGCGTCCTCCACAACATTAGCAAAATACTATCCACAAAAGGAGTGGAAGTGGGAGTAAAATAGAAGTAGCTAAAAGGCATTGAACCCCCACCCAAAATAAACACCCTTCTCTCCATCTGCTGCCTTTTGAATTACCTTCACCGAGTGGCACTGATGATTACATATAGGTTAAGAGGGCCAATAAGGTGGTGTTGGTTCGTCTATATGACAGAAATGGATGGTGACTGCATAATTAGGGGTGGCATTTATCTTTTTCTCTTCTAACATTTCCTTTCCTCTATTACTTCCACATATTTGTGCTTGCCCTTCATGGAACATGAGAATAATTTGTATTCATTTGGTAGTTCTTGAATATAATGGCCAAACTGAGAGCAAATTGGTGGTATACACTAAGAAACAGAATTTAGTACAACTAAGGATCTATTATGCTTATACTTTGGGGAATGTGGTTGAAATTTACTCTTGTTTTATGACCTATATCTACCAGTAAACACTACAGACTTTGACTGAGTTTGTTTTGCAGTTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCGAGACCCAGTGATTACTGGGGGTGAACCTGACCTCTCCCGCCCTCAGACACTAGATGCAGCAGGCGCAGCATCACTGCGTAAAATATTTAATACTACCCAGAAGACTTCACCAGTTGTGTCTTCAGAGCACAAGCGCAGCTCCTCCACAAGAAACACAAACCTAAAGAATTTAGAGTCTGCCATCAAAGGAATAGAGGGTTTAAGCTTTCGATGATGAGGTACTGGATTAGTAGCTCTGCTTTGTCACAATTCCCCCTCTACTGTATATCTTGGCACAGCAAACACACCAACATGGCGGAGTATGAGTTCTGATATTAGTTGTTTCCAGGAGGAACCATAAACAATGCAACCCCCGCAAACTCACAAATCCCAGTTTATGTTTTGTCCATACAGACACAGTTATAGGCACTTATCGTATTCTTTTTCGTCTCTATCTCTCCTGTTCTTGTTCTATCGTGTTATTCATATTTATCTTATGTTGTGAATTATGAAGAGGCCCATATATAATTGCCGATTTATATGGTCCACGAGATGTTTGACGCTAGCAGATTCTTCTGCTTTGGACATGAGCAAACTCTCTTTTGTTTCAAGCTATTTAAATATCAATCACAG</genome_strand>
        <mrna_strand>GGGGGTTAAGAGATAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCG...................................................................................................GTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAA..................................................................................CTGGAGTCCCCAATTTAAAATGGTTTGGAGTTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAAGATCTTTTCAACTTCTGCAATAGGAAAATGTCCTTGAAGACCGTTCTCATGCTTGCAGATCAGATG..........................................................................ATCAATCGGGTTGAGTTTGTTCATGCCAAATCTTTTCTTCATCGAGATATAAAACCTGACAACTTTCTTATGGGATTAGGAAGACGTGCAAATCAG....................................................................................GTCTATGTTATTGATTTTGGGCTGGCTAAGAAGTACAGAGACTCATCAACTCATCAGCATATTCCGTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATAAAAATTTGACAGGAACTGCTAGATATGCAAGCATGAACACTCACCTCGGCATTG..................................................................................AACAAAGTCGAAGGGATGATTTGGAATCATTGGGTTTTGTTCTGATGTACTTTTTAAGAGGAAG............................................................................................TCTCCCTTGGCAGGGGCTGAAAGCAGGCAATAAGAAACAGAAGTATGAGAGGATCAGTGAGAAGAAAGTTTCAACGTCAATAGAG....................................................................................ACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAG...........................................................................................................................................GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT.........................................................................GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAG..............................................................................................................................................................................................................................................................................................................GTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCGAGACCCAGTGATTACTGGGGGTGAACCTGACCTCTCCCGCCCTCAGACACTAGATGCAGCAGGCGCAGCATCACTGCGTAAAATATTTAATACTACCCAGAAGACTTCACCAGTTGTGTTTTCAGAGCACAAGCGCAGCTCCTCCACAAGAAACACAAACCTAAAGAATTTAGAGTCTGCCATCAAAGGAATAGAGGGTTTAAGCTTTCGATGATGAGGTACTGGATTAGTAGCTCTGCTTTGTCACAATTCCCCCTCTACTGTATATCTTGGCACAGCAAACACACCAACATGGCGGAGTATGAGTTTTGATATTAGTTGTTTCCAGGAGGAACCATAAACAATGCAACCCCCGCAAACTCACAAATCCCAGTTTATGTTTTGTCCATACAGACACAGTTATAGGCACTTATCGTATTTTTTTTCGTCTCTATCTCTCCTGTTCTTGTTCTATCGTGTTATTCATATTTATCTTATGTTGTGAATTATGAAGAGGCCCATATATAATTGCCGATTTATATGGTCCACGAGATGTTTGACGCTAGCAGATTTTTTTGCTTTGGACATGAGCAAACTCTCTTTTGTTTCAAGCTATTTAAATATCAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710430" ref_strand="+" ref_description="SGN-E710430 [FA55BF05]">
      <seq>atctctgagatttgatgataaaccagattatgcttatctcaagagaattttccgtgaccttttcattcgtgaagggtttcagtttgattatgtatttgactggaccatattgaaatatcagcaatcacagcttgccaatattccatctcgtgctcttggcggtactgctgggccaagttcagggacgcctcatggtcttgctaatgtcgaaaagaaatcaggtggtgaagaaggacggccaactggttggtcttcatcaaatctgacacgtaataggagcacagggctcaatttcaatgctggaagcttattgaagcaaaaaggcacagttgctaatgatttatctgtgggtaaagagttacctagttctaattttttccggtcaagtggatcagcaaggcaacctaatgtctctagcagtcgagacccagtgattactgggggtgaacctgacctctcccgccctcagacactagatgcagcaggcgcagcatcactgcgtaaaatatttaatactacccagaagacttcaccagttgtgtcttcagagcacaagcgcagctcctccacaagaaacacaaacctaaagaatttagagtctgccatcaaaggaatagagggtttaagctttcgatgatgaggtactggattagtagctctgctttgtcacaattccccctctactgtatatcttggcacagcaaacacaccaacatggcggagtatgagttctgatattagttgtttccaggaggaaccataaacaatgcaacccccgcaaactcacaaatcccagtttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5294" stop="1854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4994" g_stop="4921" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4781" g_stop="4699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="157" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4625" g_stop="4562" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="221" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4561" i_stop="4260" i_length="302">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4259" g_stop="4123" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="358" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4122" i_stop="2602" i_length="1521">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2601" g_stop="2154" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="806" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E710430" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4994" e_stop="4921"/>
          <exon e_start="4781" e_stop="4699"/>
          <exon e_start="4625" e_stop="4562"/>
          <exon e_start="4259" e_stop="4123"/>
          <exon e_start="2601" e_stop="2154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAGGTATGATCATTTTGCTTTCCATGCCTTCTCTATTTCATCTGTACATAGATGTTACAACAAGTACCTCAATGACAATGTTCACAGGATGACTTCCATTTTCCTTCCCTTTATTCTTTTTTCTTTTTCCCATCTATTTCAGGGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTTGTAAGTGACTTAAATATATTAGCTTATGGCATTGGTCTCAAAATATAAAAATGAAATGTTGATTTTGAAACAGGGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAGGTTAGTGCTCTTCTTCCCCCCTCTCCCTATTGGTTATACCCTTTCTCCTGGTTGGGATGCGTTTGGGGAAGTGTAGTACTATTGCATATAAATTCTGTGGCAACTTTACTTGTTACAAAAACGATGTGAGTGCATTTGACTTTATTCAGATATAGGACAAAAGTTCTTTTGCAATCTTGATTAGTCAAGTACCTCGGCATGAGGAATTAGATGCAGTTTCCAAAGAAGAAGTAAAAAGTTCCTGAACTTGTGTGGCAATTTCAATTTACGGAGCAATTCACCAAGTAGAGAGGATAAAGTGTGCAATCTCTTTGAATAAAATTTTCTTGAATCAATTTTACATTTTATGTTATCCTGAAAATAATTTGATGGATAGCAGGTAGGCTGCATTTCTCCTTTCTCAAAAAAAAAAAAAACGAAGAAGAAAAAGAACAAGAAAAAAAGGGTAGGCTGCAACTCTTTCTGGTGCTCTAGGCTTTTATTTTGGGTGAGGGGATACAGAATAGATGTGTAAGGATGGAAGTGGAATAATGAGAGGATGAAATGTTGTGCAGCGAGCTCTCACGTGGGTACTTTGGAGGGACAGAAACAAGAGATTTTGGAAGCAAAGGAAGATGACTTCATAAAGCTTAGGGTTTTTCTTTCATTTTGCTCAACTTTTGGATTGCCCACGGAGTTCCTACATAGATGATTGAGAGTCTTTAATAAAGAACCATGTTTTATGAACCTATTCTGCTTATGGATTATCTGTCACACACTGTTCCCAAGAACTGCCAAAGTCAAAACAGCAAAATTCTTGGATCATATCAATGGGTGCACAACTGCATGTTTCTCTGGACCATCATAGTGTACTTGCACATATCTATTCAGAGGAAGGTCTTTTCATAATGGATGATCCTCAAAACTATAATGTAGATGATTGATGGAAGAAATATGAAACATATCCAAAATTCTCGCTGATGGAAATAGACCCGACACAGATATCTCTTGTATACTGGGGCGTCCTCCACAACATTAGCAAAATACTATCCACAAAAGGAGTGGAAGTGGGAGTAAAATAGAAGTAGCTAAAAGGCATTGAACCCCCACCCAAAATAAACACCCTTCTCTCCATCTGCTGCCTTTTGAATTACCTTCACCGAGTGGCACTGATGATTACATATAGGTTAAGAGGGCCAATAAGGTGGTGTTGGTTCGTCTATATGACAGAAATGGATGGTGACTGCATAATTAGGGGTGGCATTTATCTTTTTCTCTTCTAACATTTCCTTTCCTCTATTACTTCCACATATTTGTGCTTGCCCTTCATGGAACATGAGAATAATTTGTATTCATTTGGTAGTTCTTGAATATAATGGCCAAACTGAGAGCAAATTGGTGGTATACACTAAGAAACAGAATTTAGTACAACTAAGGATCTATTATGCTTATACTTTGGGGAATGTGGTTGAAATTTACTCTTGTTTTATGACCTATATCTACCAGTAAACACTACAGACTTTGACTGAGTTTGTTTTGCAGTTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCGAGACCCAGTGATTACTGGGGGTGAACCTGACCTCTCCCGCCCTCAGACACTAGATGCAGCAGGCGCAGCATCACTGCGTAAAATATTTAATACTACCCAGAAGACTTCACCAGTTGTGTCTTCAGAGCACAAGCGCAGCTCCTCCACAAGAAACACAAACCTAAAGAATTTAGAGTCTGCCATCAAAGGAATAGAGGGTTTAAGCTTTCGATGATGAGGTACTGGATTAGTAGCTCTGCTTTGTCACAATTCCCCCTCTACTGTATATCTTGGCACAGCAAACACACCAACATGGCGGAGTATGAGTTCTGATATTAGTTGTTTCCAGGAGGAACCATAAACAATGCAACCCCCGCAAACTCACAAATCCCAGTTTATGTTTT</genome_strand>
        <mrna_strand>ATCTCTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAG...........................................................................................................................................GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT.........................................................................GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAG..............................................................................................................................................................................................................................................................................................................GTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCGAGACCCAGTGATTACTGGGGGTGAACCTGACCTCTCCCGCCCTCAGACACTAGATGCAGCAGGCGCAGCATCACTGCGTAAAATATTTAATACTACCCAGAAGACTTCACCAGTTGTGTCTTCAGAGCACAAGCGCAGCTCCTCCACAAGAAACACAAACCTAAAGAATTTAGAGTCTGCCATCAAAGGAATAGAGGGTTTAAGCTTTCGATGATGAGGTACTGGATTAGTAGCTCTGCTTTGTCACAATTCCCCCTCTACTGTATATCTTGGCACAGCAAACACACCAACATGGCGGAGTATGAGTTCTGATATTAGTTGTTTCCAGGAGGAACCATAAACAATGCAACCCCCGCAAACTCACAAATCCCAGTTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207766" ref_strand="+" ref_description="SGN-E207766 [cLEC-32-K2]">
      <seq>caatagagaccttgtgtcgaggctatcctgcagagtttgcatcatattttcattactgtcgatcactgagatttgatgataaaccagattatgcttatctcaagagaattttccgtgaccttttcattcgtgaagggtttcagtttgattatgtatttgactggaccatattgaaatatcagcaatcacagcttgccaatattccatctcgtgctcttggcggtactgctgggccaagttcagggacgcctcatggtcttgctaatgtcgaaaagaaatcaggtggtgaagaaggacggccaactggttggtcttcatcaaatctgacacgtaataggagcacagggctcaatttcaatgctggaagcttattgaagcaaaaaggcacagttgctaatgatttatctgtgggtaaagagttacctagttctaattttttccggtcaagtggatcagcaaggcaacctaatgtctctagcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5352" stop="2237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5139" g_stop="5132" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5131" i_stop="5048" i_length="84">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5047" g_stop="4921" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="135" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4781" g_stop="4699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="218" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4625" g_stop="4562" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="282" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4561" i_stop="4260" i_length="302">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4259" g_stop="4123" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="419" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4122" i_stop="2602" i_length="1521">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2601" g_stop="2537" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="484" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E207766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5139" e_stop="5132"/>
          <exon e_start="5047" e_stop="4921"/>
          <exon e_start="4781" e_stop="4699"/>
          <exon e_start="4625" e_stop="4562"/>
          <exon e_start="4259" e_stop="4123"/>
          <exon e_start="2601" e_stop="2537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGAGGTAATTGATGCTCCTCCATTCTTCATATGCTAGCTATTTAGTTTTTTATTCACTAAATTGATACTAGTGCAAATTTTCCTATAGACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAGGTATGATCATTTTGCTTTCCATGCCTTCTCTATTTCATCTGTACATAGATGTTACAACAAGTACCTCAATGACAATGTTCACAGGATGACTTCCATTTTCCTTCCCTTTATTCTTTTTTCTTTTTCCCATCTATTTCAGGGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTTGTAAGTGACTTAAATATATTAGCTTATGGCATTGGTCTCAAAATATAAAAATGAAATGTTGATTTTGAAACAGGGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAGGTTAGTGCTCTTCTTCCCCCCTCTCCCTATTGGTTATACCCTTTCTCCTGGTTGGGATGCGTTTGGGGAAGTGTAGTACTATTGCATATAAATTCTGTGGCAACTTTACTTGTTACAAAAACGATGTGAGTGCATTTGACTTTATTCAGATATAGGACAAAAGTTCTTTTGCAATCTTGATTAGTCAAGTACCTCGGCATGAGGAATTAGATGCAGTTTCCAAAGAAGAAGTAAAAAGTTCCTGAACTTGTGTGGCAATTTCAATTTACGGAGCAATTCACCAAGTAGAGAGGATAAAGTGTGCAATCTCTTTGAATAAAATTTTCTTGAATCAATTTTACATTTTATGTTATCCTGAAAATAATTTGATGGATAGCAGGTAGGCTGCATTTCTCCTTTCTCAAAAAAAAAAAAAACGAAGAAGAAAAAGAACAAGAAAAAAAGGGTAGGCTGCAACTCTTTCTGGTGCTCTAGGCTTTTATTTTGGGTGAGGGGATACAGAATAGATGTGTAAGGATGGAAGTGGAATAATGAGAGGATGAAATGTTGTGCAGCGAGCTCTCACGTGGGTACTTTGGAGGGACAGAAACAAGAGATTTTGGAAGCAAAGGAAGATGACTTCATAAAGCTTAGGGTTTTTCTTTCATTTTGCTCAACTTTTGGATTGCCCACGGAGTTCCTACATAGATGATTGAGAGTCTTTAATAAAGAACCATGTTTTATGAACCTATTCTGCTTATGGATTATCTGTCACACACTGTTCCCAAGAACTGCCAAAGTCAAAACAGCAAAATTCTTGGATCATATCAATGGGTGCACAACTGCATGTTTCTCTGGACCATCATAGTGTACTTGCACATATCTATTCAGAGGAAGGTCTTTTCATAATGGATGATCCTCAAAACTATAATGTAGATGATTGATGGAAGAAATATGAAACATATCCAAAATTCTCGCTGATGGAAATAGACCCGACACAGATATCTCTTGTATACTGGGGCGTCCTCCACAACATTAGCAAAATACTATCCACAAAAGGAGTGGAAGTGGGAGTAAAATAGAAGTAGCTAAAAGGCATTGAACCCCCACCCAAAATAAACACCCTTCTCTCCATCTGCTGCCTTTTGAATTACCTTCACCGAGTGGCACTGATGATTACATATAGGTTAAGAGGGCCAATAAGGTGGTGTTGGTTCGTCTATATGACAGAAATGGATGGTGACTGCATAATTAGGGGTGGCATTTATCTTTTTCTCTTCTAACATTTCCTTTCCTCTATTACTTCCACATATTTGTGCTTGCCCTTCATGGAACATGAGAATAATTTGTATTCATTTGGTAGTTCTTGAATATAATGGCCAAACTGAGAGCAAATTGGTGGTATACACTAAGAAACAGAATTTAGTACAACTAAGGATCTATTATGCTTATACTTTGGGGAATGTGGTTGAAATTTACTCTTGTTTTATGACCTATATCTACCAGTAAACACTACAGACTTTGACTGAGTTTGTTTTGCAGTTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCG</genome_strand>
        <mrna_strand>CAATAGAG....................................................................................ACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAG...........................................................................................................................................GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT.........................................................................GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAG..............................................................................................................................................................................................................................................................................................................GTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275021" ref_strand="+" ref_description="SGN-E275021 [cLEN-16-B16]">
      <seq>agagaccgtgtgtctaggctatcctgcagagtttgcatcatattttcattactgtcgatcactgagatttgatgataaaccagattatgcttatctcaagagaattttccgtgaccttttcattcgtgaagggtttcagtatgattatgtatttgactggaccatattgaaatatcagcaatcacagctagccaatattccatctcgtgctcttggcggtactgctgggccaagttcagggacgcctcatggtcttgctaatgtcgaaaagaaatcaggtggtgaagaaggacggccaactggttggtcttcatcaaatctgacacgtaataggagcacagggctcaatttcaatgctggaagcttattgaagcaaaaaggcacagttgctaatgatttatctgtgggtaaagagttacctagttctaattttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5351" stop="2280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5051" g_stop="4921" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4781" g_stop="4699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="214" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4625" g_stop="4562" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="278" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4561" i_stop="4260" i_length="302">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4259" g_stop="4123" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="415" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4122" i_stop="2602" i_length="1521">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2601" g_stop="2580" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="437" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E275021" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5051" e_stop="4921"/>
          <exon e_start="4781" e_stop="4699"/>
          <exon e_start="4625" e_stop="4562"/>
          <exon e_start="4259" e_stop="4123"/>
          <exon e_start="2601" e_stop="2580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAGGTATGATCATTTTGCTTTCCATGCCTTCTCTATTTCATCTGTACATAGATGTTACAACAAGTACCTCAATGACAATGTTCACAGGATGACTTCCATTTTCCTTCCCTTTATTCTTTTTTCTTTTTCCCATCTATTTCAGGGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTTGTAAGTGACTTAAATATATTAGCTTATGGCATTGGTCTCAAAATATAAAAATGAAATGTTGATTTTGAAACAGGGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAGGTTAGTGCTCTTCTTCCCCCCTCTCCCTATTGGTTATACCCTTTCTCCTGGTTGGGATGCGTTTGGGGAAGTGTAGTACTATTGCATATAAATTCTGTGGCAACTTTACTTGTTACAAAAACGATGTGAGTGCATTTGACTTTATTCAGATATAGGACAAAAGTTCTTTTGCAATCTTGATTAGTCAAGTACCTCGGCATGAGGAATTAGATGCAGTTTCCAAAGAAGAAGTAAAAAGTTCCTGAACTTGTGTGGCAATTTCAATTTACGGAGCAATTCACCAAGTAGAGAGGATAAAGTGTGCAATCTCTTTGAATAAAATTTTCTTGAATCAATTTTACATTTTATGTTATCCTGAAAATAATTTGATGGATAGCAGGTAGGCTGCATTTCTCCTTTCTCAAAAAAAAAAAAAACGAAGAAGAAAAAGAACAAGAAAAAAAGGGTAGGCTGCAACTCTTTCTGGTGCTCTAGGCTTTTATTTTGGGTGAGGGGATACAGAATAGATGTGTAAGGATGGAAGTGGAATAATGAGAGGATGAAATGTTGTGCAGCGAGCTCTCACGTGGGTACTTTGGAGGGACAGAAACAAGAGATTTTGGAAGCAAAGGAAGATGACTTCATAAAGCTTAGGGTTTTTCTTTCATTTTGCTCAACTTTTGGATTGCCCACGGAGTTCCTACATAGATGATTGAGAGTCTTTAATAAAGAACCATGTTTTATGAACCTATTCTGCTTATGGATTATCTGTCACACACTGTTCCCAAGAACTGCCAAAGTCAAAACAGCAAAATTCTTGGATCATATCAATGGGTGCACAACTGCATGTTTCTCTGGACCATCATAGTGTACTTGCACATATCTATTCAGAGGAAGGTCTTTTCATAATGGATGATCCTCAAAACTATAATGTAGATGATTGATGGAAGAAATATGAAACATATCCAAAATTCTCGCTGATGGAAATAGACCCGACACAGATATCTCTTGTATACTGGGGCGTCCTCCACAACATTAGCAAAATACTATCCACAAAAGGAGTGGAAGTGGGAGTAAAATAGAAGTAGCTAAAAGGCATTGAACCCCCACCCAAAATAAACACCCTTCTCTCCATCTGCTGCCTTTTGAATTACCTTCACCGAGTGGCACTGATGATTACATATAGGTTAAGAGGGCCAATAAGGTGGTGTTGGTTCGTCTATATGACAGAAATGGATGGTGACTGCATAATTAGGGGTGGCATTTATCTTTTTCTCTTCTAACATTTCCTTTCCTCTATTACTTCCACATATTTGTGCTTGCCCTTCATGGAACATGAGAATAATTTGTATTCATTTGGTAGTTCTTGAATATAATGGCCAAACTGAGAGCAAATTGGTGGTATACACTAAGAAACAGAATTTAGTACAACTAAGGATCTATTATGCTTATACTTTGGGGAATGTGGTTGAAATTTACTCTTGTTTTATGACCTATATCTACCAGTAAACACTACAGACTTTGACTGAGTTTGTTTTGCAGTTACCTAGTTCTAATTTTTTCC</genome_strand>
        <mrna_strand>AGAGACCGTGTGTCTAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAG...........................................................................................................................................GGTTTCAGTATGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTAGCCAATATTCCATCTCGTGCTCTT.........................................................................GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAG..............................................................................................................................................................................................................................................................................................................GTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTAGTTCTAATTTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269613" ref_strand="+" ref_description="SGN-E269613 [cLEM-2-J23]">
      <seq>agaattttccgtgaccttttcattcgtgaagggtttcagtttgattatgtatttgactggaccatattgaaatatcagcaatcacagcttgccaatattccatctcgtgctcttggcggtactgctgggccaagttcagggacgcctcatggtcttgctaatgtcgaaaagaaatcaggtatgtttggtctcgatatcctcctccctcaaccacaaaaaagaaggaaagattaacaagaaaaagttaattagaagacttagcaatcagtctgtgctaactagtgtggcataaagtggttctatgtatcttgtctcttatgtatacgtgaaaagttacaattggaatccatttcaattggtccattatgtcatttattttggatggcatgccagatgttctgttcaggaaagtacattacctctaaatatgctagcttcttattctctgggagctatatatgcttgctactcaatatgcaggtggtgaagaaggacggccaactggttggtcttcatcaaatctgacacgtaataggagcacagggctcaatttcaatgctggaagcttattgaagcaaaaaggcacagttgctaatgatttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5251" stop="3835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4951" g_stop="4921" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4781" g_stop="4699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="114" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4625" g_stop="4135" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="605" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E269613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4951" e_stop="4921"/>
          <exon e_start="4781" e_stop="4699"/>
          <exon e_start="4625" e_stop="4135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTCCGTGACCTTTTCATTCGTGAAGGTATGATCATTTTGCTTTCCATGCCTTCTCTATTTCATCTGTACATAGATGTTACAACAAGTACCTCAATGACAATGTTCACAGGATGACTTCCATTTTCCTTCCCTTTATTCTTTTTTCTTTTTCCCATCTATTTCAGGGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTTGTAAGTGACTTAAATATATTAGCTTATGGCATTGGTCTCAAAATATAAAAATGAAATGTTGATTTTGAAACAGGGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCT</genome_strand>
        <mrna_strand>AGAATTTTCCGTGACCTTTTCATTCGTGAAG...........................................................................................................................................GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT.........................................................................GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334011" ref_strand="+" ref_description="SGN-E334011 [cTOD-24-O7]">
      <seq>tagaatcagggccagattattcaaaatgggatgataataaagcatacacttgaagttgatgctgcttcattttgcaccttcttgaggcaaaactcatgaaggaacaaaaccccaaaaaagaattattcaaaaagctgaaatcttgatttttcttttttttgattcattttcattctatgttggattgaatttttcagggtttgtgtggtgaagttttttttttttttcaaatttaaatttttagtctccgatggagcctcgtgttggtaataagttcaggcttggccggaaaattggtagcggttcttttggggagatctacctcggtggtaatgttcaaactaatgaagaggttgctatcaagctggaaaatgtgaaaacaaagcatcctcaactgttgtacgaagcaaagctgtataaaatactacaaggaggaactggagtccccaatttaaaatggtttggagttgaaggagattacaatgtccttgtgatggatttactgggacctagtcttgaagatcttttcaacttctgcaataggaaaatgtccttgaagaccgttctcatgcttgcagatcagatgatcaatcgggttgagtttgttcatgccaaatcttttcttcatcgagatataaaacctgacaactttcttatgggattaggaagacgtgcaaatcaggtctatgttattgattttgggctggctaagaagtacagagactcatcaactcatcagcatattccgtatagagaaaataaaaatttgacaggaactgctagatatgcaagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9226" stop="5173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8926" g_stop="8601" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8600" i_stop="8502" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8501" g_stop="8461" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="367" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8460" i_stop="7466" i_length="995">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7465" g_stop="7396" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="437" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7395" i_stop="7314" i_length="82">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7313" g_stop="7165" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="586" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7164" i_stop="7091" i_length="74">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7090" g_stop="6995" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="682" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6994" i_stop="6911" i_length="84">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6910" g_stop="6840" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="753" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6839" i_stop="5517" i_length="1323">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5516" g_stop="5473" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="797" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E334011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8926" e_stop="8601"/>
          <exon e_start="8501" e_stop="8461"/>
          <exon e_start="7465" e_stop="7396"/>
          <exon e_start="7313" e_stop="7165"/>
          <exon e_start="7090" e_stop="6995"/>
          <exon e_start="6910" e_stop="6840"/>
          <exon e_start="5516" e_stop="5473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCGGTATTTGAACCCTTCATGTTTTTTATTTTTTTGCCTTTCAGGTTTTGTTTTTATTTTTAGGGTTAATTTAATTGGTGATTTGTTTATATGTTCTTCAAGGTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTGGTAAGTTGAAATTATCTCTCTGTGTGTGTTTTTATTTGTCTAAACTTGTTATAGGAGTATTGATATGTTTTTTAATTGCTAAAGCATATGGTTTTGCTATGAAAAAACTTGAGAATTTGTCATTGTTTTGATGATGGATGGTTTTTGGTTAGCAATTAAAACACAATTATATGCATGTGTTATTATCCGTGTGTTTAGTTGCTAATTATTATTAGGGTGGAAGGGGGTAGATTAAGAACAACTAGATAGATACCAGTGTAATTCTATAAGCGAGGTTTGGGCAGGGTAGGATGTATGTAGTCCTTATCCCCTACCTTTTGCCGGGAGAGGATTAAACTCAATCTTTTATAGAGAACACGTTTAGTTATATTTTATCATGCCTTCTCCGTTGCTAGTGTGGTCCTTTTCCATCGCGAAGTACTTGTAGCTGTCTTTTGATGAATGTCAGAGTAACATTGGAATCCAGGATCTTTGGTTGTTCTAATACCAAGTTAATATGAGGATGCAACACTAAACTTGAGATAATAAGTGGAGTCACCCAAAACCGTTATAAACACCCCTGCATGTTGAAGACATAATTAAGCAAATAAACTTGTGCCCGCCCTCTGATTGCTTAGATTATTAGATTAAAAAGGCTCTCACACTCAATAGGGTTTTGACCACTTGACCATTTGGTCTTATGGATCACAGTAGAGGAAATGTAACCGTTATTACCTAGCCTACAATTTGAGACTCCAAGTAGTGAATTTGCATTAACTAAAGCAAATTTGTGGTTTTGAAGAAATTGCAACAGTTTCACTGCTTACATTTGTCTTTCTAGAATTTTTTATATAAAACTTGATATCTATTGTAAACTGAAGTTTTTGCTGATACTCATGATATCATTCTACTTCTGCAAATGCTTAGTCATTCGTGAACATCCCTTCAATTATGTCATAGATGATTTTTTTAGTTTGCAAGATTAAGTTGCTGATTTTCTTATTTCTTGTACTCAGGAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAAGTAATTTCTCATCTTCATGTTGCCTGTTCTCTTCATTAACTACTCAATGTTATAAGTGGTATTTATCTTTTTATATTGGTAGCTGGAGTCCCCAATTTAAAATGGTTTGGAGTTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAAGATCTTTTCAACTTCTGCAATAGGAAAATGTCCTTGAAGACCGTTCTCATGCTTGCAGATCAGATGGTGTGTGATGTTTTGTACCACTTATTGATTCCAATTACAATTTAAAATCTCTTCTCACCCTTATCAATTTTCAGATCAATCGGGTTGAGTTTGTTCATGCCAAATCTTTTCTTCATCGAGATATAAAACCTGACAACTTTCTTATGGGATTAGGAAGACGTGCAAATCAGGTATTGGGATTAAAGCTCTTACTTTGCTGCTCAATTCACCTATTGCAGGCATGGTATCTTCATAACCACGATTTATTAATATAGGTCTATGTTATTGATTTTGGGCTGGCTAAGAAGTACAGAGACTCATCAACTCATCAGCATATTCCGTATAGGTCAGCTCCCTTGAAGCACTATGAGGTTGATATCTGTTTTGTTTAAGAAGATGAAGTACTCGAAATATGGTGTTCATGCATATGATATGCCTATAGGAGCTTTGTGTTGTGGTCTGTTTGCTCTTTCGCTATAGAGCAATAGAAAAGAGTGAATTCTTTCAGTTTGCATCATTTTTAAACTCCTATGAAATTATCCCCTCACTTTTTTTAATAATTGTGGACTTGTGGTTTCTGAGAAAAGCTTGCACACACCGAGTAATCCCATAGAGTACTTTCTACCTCCCAACAGCACAGAGCACCAGGTAACTTTGTCCACCAAGGCATAGACAGATGAGAAGAAATTACCTAGACTTAGTCTTTTGATCATGTAGTCCAAAAGCATGTGTCAGTATAGGTGCTTCCTTATTTTGTGGGGGGTTTTCTTTATGAATTAACAGGATATAAGAAGAGTAGAAACACACATTTTTATCTGTATTGCATGTAAGATAAGTCATCAAAGCTATTTAATGACTTCACAAAGGTATCAGAATGCATGAACTAGCAAATTTAATAAACTAACTTAATCTCTGTTCGGGAATAATCATATCCACTCCTTTTCACTGTTACTACTTTCATATTGTACACCTTCTCACTACTAACTTCTAGTTCGTTAATAACTATCCCTTCAATATGATCAAACTGTTTTTTGGTTTGCCTGGCACTGCTGGTCAAGACTTAAGAGGAACGAAGCGACAACTGGGTAGTTTAAACAAGAAATATTTTATCACTTCGTAAAAGACTGAAAAATTTACGGATAGGGAGAAGAAACTGATATCCTTCTTAAATTTTTTCTTTAGTTAAAGCCTTAATATCTTAACCCTTTTCATTAATAACTGTGATTAGGTTATGGCATTGGAAAATGATTATCGTTCTAGTTTCCTTCGACTGGGACAGGGAAATATCAGTAAATGATATGAAACCAGATCCTGTTGATCTTTCCCAACTGTTTTATATTTTGGTCATTCATCATACATTTAACTAATAGAAAGACTTTTTGGCATCAAAGATGCAGTGCCATCATGCTTACCATAGAGGAAGTGATCTCTCTAATTTATAGAGCTTGTGCAATTCACCGAAATTTTAACAGTGAATCTGGAGATTTTCTGTATTTTGTAAATTACAGTTGGTCATTTGTATTTCGAGCTTGTGAAGAAGTATATTTGTATGTTGAATCATTGATTAATCACATTGGATAATTGTACTCTTTATTAGTCAATTATCTTACAATGAGATCCTCCTCCAGGGCATGGATGTATGATTTATTTTCTTTTTAATGTGATACAGAGAAAATAAAAATTTGACAGGAACTGCTAGATATGCAAGCATGA</genome_strand>
        <mrna_strand>TAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCG...................................................................................................GTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAA..................................................................................CTGGAGTCCCCAATTTAAAATGGTTTGGAGTTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAAGATCTTTTCAACTTCTGCAATAGGAAAATGTCCTTGAAGACCGTTCTCATGCTTGCAGATCAGATG..........................................................................ATCAATCGGGTTGAGTTTGTTCATGCCAAATCTTTTCTTCATCGAGATATAAAACCTGACAACTTTCTTATGGGATTAGGAAGACGTGCAAATCAG....................................................................................GTCTATGTTATTGATTTTGGGCTGGCTAAGAAGTACAGAGACTCATCAACTCATCAGCATATTCCGTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATAAAAATTTGACAGGAACTGCTAGATATGCAAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333110" ref_strand="+" ref_description="SGN-E333110 [cTOD-19-H11]">
      <seq>gaagtttctgattgaaatacgtatgggccgactatgaaatacactgtatattcattcagttccctctgatgaatttatctacaacactacgtacgacgctgtatcatggggatcgactagggtgggtggggacaagaagatagtattacgaaagcaaaaagacagaactaaacgtatatatatatatataaaataatagaaggaagaaattggggttaagagatagaatcagggccagattattcaaaatgggatgataataaagcatacacttgaagttgatgctgcttcattttgcaccttcttgaggcaaaactcatgaaggaacaaaaccccaaaaaagaattattcaaaaagctgaaatcttgatttttcttttttttgattcattttcattctatgttggattgaatttttcagggtttgtgtggtgaagttttttttttttttcaaatttaaatttttagtctccgatggagcctcgtgttggtaataagttcaggcttggccggaaaattggtagcggttcttttggggagatctacctcggtggtaatgttcaaactaatgaagaggttgctatcaagctggaaaatgtgaaaacaaagcatcctcaactgttgtacgaagcaaagctgtataaaatactacaaagaggaagnaatttctcatcttcatgttgcctgttctcttcattaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9449" stop="7054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9149" g_stop="8601" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8600" i_stop="8502" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8501" g_stop="8461" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="590" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8460" i_stop="7466" i_length="995">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7465" g_stop="7354" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="702" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E333110" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9149" e_stop="8601"/>
          <exon e_start="8501" e_stop="8461"/>
          <exon e_start="7465" e_stop="7354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTCTGATTGAAATACGTATGGGCCGACTATGAAATACACTGTATATTCATTCAGTTCCCTCTGATGAATTTATCTACAACACTACGTACGACGCTGTATCATGGGGATCGACTAGGGTGGGTGGGGACAAGAAGATAGTATTACGAAAGCAAAAAGACAGAACTAAACGTATATATATATATATAAAATAATAGAAGGAAGAAATTGGGGTTAAGAGATAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCGGTATTTGAACCCTTCATGTTTTTTATTTTTTTGCCTTTCAGGTTTTGTTTTTATTTTTAGGGTTAATTTAATTGGTGATTTGTTTATATGTTCTTCAAGGTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTGGTAAGTTGAAATTATCTCTCTGTGTGTGTTTTTATTTGTCTAAACTTGTTATAGGAGTATTGATATGTTTTTTAATTGCTAAAGCATATGGTTTTGCTATGAAAAAACTTGAGAATTTGTCATTGTTTTGATGATGGATGGTTTTTGGTTAGCAATTAAAACACAATTATATGCATGTGTTATTATCCGTGTGTTTAGTTGCTAATTATTATTAGGGTGGAAGGGGGTAGATTAAGAACAACTAGATAGATACCAGTGTAATTCTATAAGCGAGGTTTGGGCAGGGTAGGATGTATGTAGTCCTTATCCCCTACCTTTTGCCGGGAGAGGATTAAACTCAATCTTTTATAGAGAACACGTTTAGTTATATTTTATCATGCCTTCTCCGTTGCTAGTGTGGTCCTTTTCCATCGCGAAGTACTTGTAGCTGTCTTTTGATGAATGTCAGAGTAACATTGGAATCCAGGATCTTTGGTTGTTCTAATACCAAGTTAATATGAGGATGCAACACTAAACTTGAGATAATAAGTGGAGTCACCCAAAACCGTTATAAACACCCCTGCATGTTGAAGACATAATTAAGCAAATAAACTTGTGCCCGCCCTCTGATTGCTTAGATTATTAGATTAAAAAGGCTCTCACACTCAATAGGGTTTTGACCACTTGACCATTTGGTCTTATGGATCACAGTAGAGGAAATGTAACCGTTATTACCTAGCCTACAATTTGAGACTCCAAGTAGTGAATTTGCATTAACTAAAGCAAATTTGTGGTTTTGAAGAAATTGCAACAGTTTCACTGCTTACATTTGTCTTTCTAGAATTTTTTATATAAAACTTGATATCTATTGTAAACTGAAGTTTTTGCTGATACTCATGATATCATTCTACTTCTGCAAATGCTTAGTCATTCGTGAACATCCCTTCAATTATGTCATAGATGATTTTTTTAGTTTGCAAGATTAAGTTGCTGATTTTCTTATTTCTTGTACTCAGGAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAAGTAATTTCTCATCTTCATGTTGCCTGTTCTCTTCATTAACTA</genome_strand>
        <mrna_strand>GAAGTTTCTGATTGAAATACGTATGGGCCGACTATGAAATACACTGTATATTCATTCAGTTCCCTCTGATGAATTTATCTACAACACTACGTACGACGCTGTATCATGGGGATCGACTAGGGTGGGTGGGGACAAGAAGATAGTATTACGAAAGCAAAAAGACAGAACTAAACGTATATATATATATATAAAATAATAGAAGGAAGAAATTGGGGTTAAGAGATAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCG...................................................................................................GTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAAGAGGAAGNAATTTCTCATCTTCATGTTGCCTGTTCTCTTCATTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365590" ref_strand="+" ref_description="SGN-E365590 [cLPT-12-C9]">
      <seq>tttggcgtatgatatgaagcatcattttttgaatttagcagtcagctgtgcatctgtcatttgctgccgtgtctctcctaagcagaaggccttggttactaggttagtaaaggaaggaactggaaaaaccacattagcaattggtgatggtgcaaatgatgttgggatgatccaagaagcggacattggagttggcattagcggtgcagaaggaatgcagcttcttgcaggctgtgatggctagtgactttgctattgcacagtttcggttcttggagagacttcttgttgtacacgggcattggtgctacaaaagaattgctcaaatgatatgctatttcttctacaaaaatatagcttttggtctcacactcttttactttgaggctttcgcgggcttttcgggccagtctgtctatgatgattcatacatgattctgttcaatgtgattcttacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13264" stop="11148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12964" g_stop="12871" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12870" i_stop="12771" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12770" g_stop="12645" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="220" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12644" i_stop="11793" i_length="852">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11684" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="329" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11683" i_stop="11580" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11579" g_stop="11448" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="461" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E365590" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12964" e_stop="12871"/>
          <exon e_start="12770" e_stop="12645"/>
          <exon e_start="11792" e_stop="11684"/>
          <exon e_start="11579" e_stop="11448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCGTATGATATGAAGCATCATTTTTTGAATTTAGCAGTCAGCTGTGCATCTGTCATTTGCTGCCGTGTCTCTCCTAAGCAGAAGGCCTTGGTAAGCTATGTGAAATCTATCAACCTTTTCTTGTCTAACTCAATTGTTCATTCATGAAATTGGTCATATTTACATTAGTTTGTATTTAATTTGGTCGCAGGTTACTAGGTTAGTAAAGGAAGGAACTGGGAAAACCACATTAGCAATTGGTGATGGTGCAAATGATGTTGGGATGATCCAAGAAGCGGACATTGGAGTTGGCATTAGCGGTGCAGAAGGAATGCAGGTTGGTGATACATCTAGCTGGCGTTTTGGTGTTCTTAATATACTGAGAGAATTTTAACATTTTCCTTCTGACAATAACTTTTTATATACTGCATTTTAGAAATTTGTCAGGGAAATACGGTCAAAGGGGTGCTGCACATTTACATTAGAGTTCACAGACTGACTTGAAACAATATGAACTTTTAAATACTGCAAACCCAAGATAACCAGATTCAACTTCCTTGTGCTATATTGTTCAATTTTACAATTTCTTTTGGGACTAAGACTAATGCATTAGTATTTTTTTTTTTGAATCAGTTTATGTGGTTAGGGCTTATAGCTGACTGTTTGATAATGTCACAAGACCACTTAAAACCTAAGCAGCAACTAAACCTCAGGCCTAATTAGCAAAACTGATTTTTCTAGAGACTTCAGGAAACCAATACTCTTCCCATTGATTTGTAGAAAAATAGTTGTGCAGAACCTTTTACCCATTTAAATCTTGCCTGAATGATCTGACATATACCAATTTGATATCACATTTTAAATTCTTTCAAAAGTTTGAGGACATTGAAATGTGATTTGAAGGCTGTTTCTTGGCCACAATCTCTCCACTGTCCGATCCATCTTATCAAAGTTTTGATAAACTATTTAGCGCGGGCACGGGCGCCACCGATATTGACAAGAAAATAAAGTTGACCTGCAACTCAGCAAATTGCATCTGTGTTTTTGAGTATATATGACCGTTTAAAGCACTACCAACTTAAAATAATCTGGAAAATTTTCTCTAATTTGGTAAGATGGCCCTAAATCCATTGGCTCAAGTAAATGCTTTTGTTCTTGGAGGCTGTAAGTCGGCTTACTCGATTATTAGCTTCTTGCAGGCTGTGATGGCTAGTGACTTTGCTATTGCACAGTTTCGGTTCTTGGAGAGACTTCTTGTTGTACACGGGCATTGGTGCTACAAAAGAATTGCTCAAATGGTAATTCCTCTTGATCTGTTTTATTTTATGAAAGAAAATGGTCATGTTTCCGTTCATGGATGCTTTTCATGTTTCATCTAACTTACTGTGTTCTCTTCATGCAGATATGCTATTTCTTCTACAAAAATATAGCTTTTGGTCTCACACTCTTTTACTTTGAGGCTTTTGCGGGCTTTTCGGGCCAGTCTGTCTATGATGATTCATACATGATTCTGTTCAATGTGATTCTTACCTCA</genome_strand>
        <mrna_strand>TTTGGCGTATGATATGAAGCATCATTTTTTGAATTTAGCAGTCAGCTGTGCATCTGTCATTTGCTGCCGTGTCTCTCCTAAGCAGAAGGCCTTG....................................................................................................GTTACTAGGTTAGTAAAGGAAGGAACTGGAAAAACCACATTAGCAATTGGTGATGGTGCAAATGATGTTGGGATGATCCAAGAAGCGGACATTGGAGTTGGCATTAGCGGTGCAGAAGGAATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGCAGGCTGTGATGGCTAGTGACTTTGCTATTGCACAGTTTCGGTTCTTGGAGAGACTTCTTGTTGTACACGGGCATTGGTGCTACAAAAGAATTGCTCAAATG........................................................................................................ATATGCTATTTCTTCTACAAAAATATAGCTTTTGGTCTCACACTCTTTTACTTTGAGGCTTTCGCGGGCTTTTCGGGCCAGTCTGTCTATGATGATTCATACATGATTCTGTTCAATGTGATTCTTACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708380" ref_strand="+" ref_description="SGN-E708380 [FA35CD10]">
      <seq>cattttacagattctgttgctcagtggaataggaccaaaggctgaattgaaaaaattgaacatctcggtggtgtttgataataaatttgtcggtaaaggcatgtcagacaaccccttgaacaccatatttgttccaacaaataggcctgttcagcagtcacttatccagactgtaggaattaccaagatgggggtctatattgaagctagtagtggatatggagaaaccgaagatagcattcattgccatcatggtatagtttcagctgagatagggcaactctccgcaattcctccaaagcagagaacactggaagcaattgaagtctacaaaagaaacaagaaacatgttccacaagaagcattcaggggaggtttcatattagaaaagatcgcgacacctttatcaacagggcacattagcttgaagagcaccaaggttgatgacagtccttccgtcactttcaactacttcagccatccacgcgacctgaagagatgtgtagatggcatacgcatcgtggagcagattgtgaaatcaaaacatttcaccacttacgcacagtgtgacaaggatacactggacaagttgctaaacatgagtgtccaagctaacattaatcttataccgaaacacactaatgatacagagtcacttgaacagttctgcaaagacacagtgactacaatatggcactaccatggcggttgccaagtaggcaaagtggtaacccctgattacagggttatgaatgtcaacaggctccgggtcattgatggttctacattcaacgagtcgccaggcaccaatcctcaagccaccgtgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25101" stop="23412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24808" g_stop="24538" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24537" i_stop="24272" i_length="266">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24271" g_stop="23712" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="831" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E708380" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24808" e_stop="24538"/>
          <exon e_start="24271" e_stop="23712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTCAGATTCTGTTGCTCAGTGGAATAGGACCAAAGGCTGAATTGAAAAAATTGAACATCTCGGTGGTGTTTGATAATAAATTTGTCGGTAAAGGCATGTCAGACAACCCCTTGAACACCATATTTGTTCCAACAAATAGGCCTGTTCAGCAGTCACTTATCCAGACTGTAGGAATTACCAAGATGGGGGTCTATATTGAAGCTAGTAGTGGATATGGAGAAACCGAAGATAGCATTCATTGCCATCATGGTATAGTTTCAGCTGAGGTTAGTCGTATAACTTCAACTTCTTTCAAGTATACAGTCGAGATTTTGACTATCAGTTCTTGTCTTGTTGGAAATATCCTCTTTACTTTACATACTGAAACCGAGAACTTTTAGTGGCCAAAGCCAGAACATGGCTTCTAGGACACTTGAGTGCTCGAGTTTTTTCACATGACACTCCTTAAAACTCCTTATGATCACTTCATAATGAAAGTCACTAGACCTTCAAGCCTTTTTCTGACATACATTGCACGTTTGGGCATAACCAGATAGGGCAACTCTCCGCAATTCCTCCAAAGCAGAGAACACTGGAAGCAATTGAAGTCTACAAAAGAAACAAGAAACATGTTCCACAAGAAGCATTCAGGGGAGGTTTCATATTAGAAAAGATCGCGACACCTTTATCAACAGGGCACATTAGCTTGAAGAGCACCAAGGTTGATGACAGTCCTTCCGTCACTTTCAACTACTTCAGCCATCCACGCGACCTGAAGAGATGTGTAGATGGCATACGCATCGTGGAGCAGATTGTGAAATCAAAACATTTCACCACTTACGCACAGTGTGACAAGGATACACTGGACAAGTTGCTAAACATGAGTGTCCAAGCTAACATTAATCTTATACCGAAACACACTAATGATACAGAGTCACTTGAACAGTTCTGCAAAGACACAGTGACTACAATATGGCACTACCATGGCGGTTGCCAAGTAGGCAAGGTGGTAACCCCTGATTACAGGGTTATGAATGTCAACAGGCTCCGGGTCATTGATGGTTCTACATTCAACGAGTCGCCAGGCACCAATCCTCAAGCCACCGTGTTGAT</genome_strand>
        <mrna_strand>CATTTTACAGATTCTGTTGCTCAGTGGAATAGGACCAAAGGCTGAATTGAAAAAATTGAACATCTCGGTGGTGTTTGATAATAAATTTGTCGGTAAAGGCATGTCAGACAACCCCTTGAACACCATATTTGTTCCAACAAATAGGCCTGTTCAGCAGTCACTTATCCAGACTGTAGGAATTACCAAGATGGGGGTCTATATTGAAGCTAGTAGTGGATATGGAGAAACCGAAGATAGCATTCATTGCCATCATGGTATAGTTTCAGCTGAG..........................................................................................................................................................................................................................................................................ATAGGGCAACTCTCCGCAATTCCTCCAAAGCAGAGAACACTGGAAGCAATTGAAGTCTACAAAAGAAACAAGAAACATGTTCCACAAGAAGCATTCAGGGGAGGTTTCATATTAGAAAAGATCGCGACACCTTTATCAACAGGGCACATTAGCTTGAAGAGCACCAAGGTTGATGACAGTCCTTCCGTCACTTTCAACTACTTCAGCCATCCACGCGACCTGAAGAGATGTGTAGATGGCATACGCATCGTGGAGCAGATTGTGAAATCAAAACATTTCACCACTTACGCACAGTGTGACAAGGATACACTGGACAAGTTGCTAAACATGAGTGTCCAAGCTAACATTAATCTTATACCGAAACACACTAATGATACAGAGTCACTTGAACAGTTCTGCAAAGACACAGTGACTACAATATGGCACTACCATGGCGGTTGCCAAGTAGGCAAAGTGGTAACCCCTGATTACAGGGTTATGAATGTCAACAGGCTCCGGGTCATTGATGGTTCTACATTCAACGAGTCGCCAGGCACCAATCCTCAAGCCACCGTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577619" ref_strand="-" ref_description="SGN-E577619 [LE15AG11]">
      <seq>cagctttctacattggtcatcttacagttgatgaagtaaaagacacttttttgtcttttcgtggctggagtaaaggggttgtatttatcaatggatttaatttaggaaggttttggccgtcctttggaccccagtgcaacctttatgttcctgctccaatcctgcaagaaggaaaaaatctcgtggttattctcgaattagaggctccgaatgctgagttgtttgtggcctcagttgaccatccagatttcacatgtggttcttccgcaaattcacgagtgcatcaaatctgacatcatcatgacttagccaaatctggaatgtttgattatcttcatcttattatctgaatactgttcccgtgcattggttactaaacaacacgatgaatgtgtactgagaacaatggaaaggtgcattttttaagcaaacaccattgggcgcttcacactcggtaatatttatagtaaattccttgagatgatgttgaagagatcatagaaccccgagggaagaaacataaaactttctcctcctgaaatgttggtagagatgttgaagagctcaattagttgagatgatgttgaatatattcactagtttgagttaaacatattgatcgaagcagtttgagttctccgtcttttagaaattacttgttctattttgttgatcacctttgctttatttaaaattgtttgatgaatgattcttgacattcatgttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30082" stop="28367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29782" g_stop="29664" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29663" i_stop="29554" i_length="110">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29553" g_stop="29488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="185" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29487" i_stop="29213" i_length="275">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29212" g_stop="28663" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="735" r_length="550" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E577619" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577619" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29782" e_stop="29664"/>
          <exon e_start="29553" e_stop="29488"/>
          <exon e_start="29212" e_stop="28663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCGGTAACTTTTCTATTTTTAGTTTCATAAATATTTCTTTTAGTGGTCAGATAATAAAATCCTGAAATTAATTCATTTTTCAAACTGGAATATTCTGTTTGTCTCTATTGCAGTCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAAGAAGGAAAAAATCTCGTGGTATGTCATTAAGAATTACTGGAACTCATCTTGCTTTTCTTCTCTCTCTCCGATTAAAGGTGACACTGGAATCCGATGAAAAAATATTAGCAAATTCCTGGATCTTTATTTTTTCGAGAATCAATTGAATTTCCAAATTGAACCTGCTTTATTGTCCCACATTAATATTTTTCTAGGTGCACTAATTTTTTCAGGCTCCTCTAATATGTAGATGTTTTAAGATGAATAGACCTCCACTAGTTCTCATGCAATTACATTTCTCGTCTTACATTTAGGTTATTCTCGAATTAGAGGCTCCGAATGCTGAGTTGTTTGTGGCCTCAGTTGACCATCCAGATTTCACATGTGGTTCTTCCGCAAATTCACGAGTGCATCAAATCTGACATCATCATGACTTAGCCAAATCTGGAATGTTTGATTATCTTCATCTTATTATCTGAATACTGTTCCCGTGCATTGGTTACTAAACAACACGATGAATGTGTACTGAGAACAATGGAAAGGTGCATTTTTTAAGCAAACACCATTGGGCGCTTCACACTCGGTAATATTTATAGTAAATTCCTTGAGATGATGTTGAAGAGATCATAGAACCCCGAGGGAAGAAACATAAAACTTTCTCCTCCTGAAATGTTGGTAGAGATGTTGAAGAGCTCAATTAGTTGAGATGATGTTGAATATATTCACTAGTTTGAGTTAAACATATTGATCGAAGCAGTTTGAGTTCTCCGTCTTTTAGAAATTACTTGTTCTATTTTGTTGATCACCTTTGCTTTATTTAAAATTGTTTGATGAATGATTCTTGACATTCATGTTGAAAAGTCG</genome_strand>
        <mrna_strand>CAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCG..............................................................................................................TCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAAGAAGGAAAAAATCTCGTG...................................................................................................................................................................................................................................................................................GTTATTCTCGAATTAGAGGCTCCGAATGCTGAGTTGTTTGTGGCCTCAGTTGACCATCCAGATTTCACATGTGGTTCTTCCGCAAATTCACGAGTGCATCAAATCTGACATCATCATGACTTAGCCAAATCTGGAATGTTTGATTATCTTCATCTTATTATCTGAATACTGTTCCCGTGCATTGGTTACTAAACAACACGATGAATGTGTACTGAGAACAATGGAAAGGTGCATTTTTTAAGCAAACACCATTGGGCGCTTCACACTCGGTAATATTTATAGTAAATTCCTTGAGATGATGTTGAAGAGATCATAGAACCCCGAGGGAAGAAACATAAAACTTTCTCCTCCTGAAATGTTGGTAGAGATGTTGAAGAGCTCAATTAGTTGAGATGATGTTGAATATATTCACTAGTTTGAGTTAAACATATTGATCGAAGCAGTTTGAGTTCTCCGTCTTTTAGAAATTACTTGTTCTATTTTGTTGATCACCTTTGCTTTATTTAAAATTGTTTGATGAATGATTCTTGACATTCATGTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262135" ref_strand="+" ref_description="SGN-E262135 [cLEG-58-B17]">
      <seq>tgttattcataccaaaggtgcatgacagggcgcaagtattcatttcatgcccttcagacaactatgacgaaaatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgttgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcaaaagaataattctgttatttcagatgcatacaccgaccttagagaatctgtgcagataaaacttaaaaacaaaagaaattatcatccagtgccagctttctacattggtcatcttacagttgatgaagtaaaagacacttttttgtcttttcgtggctggagtaaaggggttgtatttatcaatggatttaatttaggaaggttttggccgtcctttggaccccagtgcaacctttatgttcctgctccaatcctgcaagaaggaaaaaatctcgtggttattctcgaattagaggctccgaatgctgagttgtttgtggcctcagttgaccatccagatttcacatgtggttcttccgcaaattcacgagtgcatcaaatctgacatcatcatgacttagccaaatctgggatggttgattatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33459" stop="28762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="167" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="218" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="384" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29797" g_stop="29664" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="518" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29663" i_stop="29554" i_length="110">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29553" g_stop="29488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="584" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29487" i_stop="29213" i_length="275">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29212" g_stop="29062" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="735" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E262135" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29664"/>
          <exon e_start="29553" e_stop="29488"/>
          <exon e_start="29212" e_stop="29062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCGGTAACTTTTCTATTTTTAGTTTCATAAATATTTCTTTTAGTGGTCAGATAATAAAATCCTGAAATTAATTCATTTTTCAAACTGGAATATTCTGTTTGTCTCTATTGCAGTCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAAGAAGGAAAAAATCTCGTGGTATGTCATTAAGAATTACTGGAACTCATCTTGCTTTTCTTCTCTCTCTCCGATTAAAGGTGACACTGGAATCCGATGAAAAAATATTAGCAAATTCCTGGATCTTTATTTTTTCGAGAATCAATTGAATTTCCAAATTGAACCTGCTTTATTGTCCCACATTAATATTTTTCTAGGTGCACTAATTTTTTCAGGCTCCTCTAATATGTAGATGTTTTAAGATGAATAGACCTCCACTAGTTCTCATGCAATTACATTTCTCGTCTTACATTTAGGTTATTCTCGAATTAGAGGCTCCGAATGCTGAGTTGTTTGTGGCCTCAGTTGACCATCCAGATTTCACATGTGGTTCTTCCGCAAATTCACGAGTGCATCAAATCTGACATCATCATGACTTAGCCAAATCTGGAATGTTTGATTATCTTC</genome_strand>
        <mrna_strand>GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA...........................................................................................................................ATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCG..............................................................................................................TCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAAGAAGGAAAAAATCTCGTG...................................................................................................................................................................................................................................................................................GTTATTCTCGAATTAGAGGCTCCGAATGCTGAGTTGTTTGTGGCCTCAGTTGACCATCCAGATTTCACATGTGGTTCTTCCGCAAATTCACGAGTGCATCAAATCTGACATCATCATGACTTAGCCAAATCTGGGATGGTTGATTATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261967" ref_strand="+" ref_description="SGN-E261967 [cLEG-58-I6]">
      <seq>tttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgttattcataccaaaggtgcatgacagggcgcaagtattcatttcatgcccttcagacaactatgacgaaaatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgttgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcaaaagaataattctgttatttcagatgcatacaccgaccttagagaatctgtgcagataaaacttaaaaacaaaagaaattatcatccagtgccagctttctacattggtcatcttacagttgatgaagtaaaagacacttttttgtcttttcgtggctggagtaaaggggttgtatttatcaatggatttaatttangaaggttttggccgtcctttggaccccagtgcaacctttatgttcctgctccaatcctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33962" stop="29206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33765" g_stop="33756" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="82" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="232" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="283" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="449" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29664" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="583" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29663" i_stop="29554" i_length="110">
            <donor d_prob="0.748" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29553" g_stop="29506" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="631" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E261967" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33765" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29664"/>
          <exon e_start="29553" e_stop="29506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCGGTAACTTTTCTATTTTTAGTTTCATAAATATTTCTTTTAGTGGTCAGATAATAAAATCCTGAAATTAATTCATTTTTCAAACTGGAATATTCTGTTTGTCTCTATTGCAGTCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAA</genome_strand>
        <mrna_strand>TTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA...........................................................................................................................ATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTANGAAGGTTTTGGCCG..............................................................................................................TCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259432" ref_strand="+" ref_description="SGN-E259432 [cLEG-43-P6]">
      <seq>tttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgttattcataccaaaggtgcatgacagggcgcaagtattcatttcatgcccttcagacaactatgacgaaaatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgttgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcaaaagaataattctgttatttcagatgcatacaccgaccttagagaatctgtgcagataaaacttaaaaacaaaagaaattatcatccagtgccagctttctacattggtcatcttacagttgatgaagtaaaagacacttttttgtcttttcgtggctggagtaaaggggttgtatttatcaatggatttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33962" stop="29380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33765" g_stop="33756" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="82" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="232" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="283" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="449" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29680" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="567" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E259432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33765" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTT</genome_strand>
        <mrna_strand>TTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA...........................................................................................................................ATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257073" ref_strand="+" ref_description="SGN-E257073 [cLEG-44-H23]">
      <seq>tttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgttattcataccaaaggtgcatgacagggcgcaagtattcatttcatgcccttcagacaactatgacgaaaatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgctgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcaaaagaataattctgttatttcagatgcatacaccgaccttagagaatctgtgcagataaaacttaaaaacaaaagaaattatcatccagtgccagctntctacattggtcatcttacagttgatgaagtaaaagacacttttttgtcttttcgtggctggagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33962" stop="29410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33765" g_stop="33756" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="82" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="232" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="283" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="449" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29710" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="537" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E257073" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33765" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAA</genome_strand>
        <mrna_strand>TTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGCTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA...........................................................................................................................ATTATCATCCAGTGCCAGCTNTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359395" ref_strand="+" ref_description="SGN-E359395 [cLHT-31-I1]">
      <seq>tcactgaatctgaaaacccacttgcaatggagtctttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgttattcataccaaaggtgcatgacagggcacaagtattcatttcatgcccttcagacaactatgacgaaaatccaaaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcgaataacagaatttatatactggttgaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgttgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcgaaagaataattctgttatttcagatgcatacgccggccttagagaatctgtgcagataaaactggaaaacaaaagaaattatcatccagtgccagctttctacactggtcatcttacagttgatgaagtaaaagacacttttttgtcttttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34099" stop="29421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33799" g_stop="33756" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="116" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="266" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="317" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="483" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="0.92"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29721" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="560" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E359395" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33799" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGAATCTGAAAACCCACTTGCAATGGAGTCTTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGT</genome_strand>
        <mrna_strand>TCACTGAATCTGAAAACCCACTTGCAATGGAGTCTTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAGGGCACAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAAAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGAATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCGAAAGAATAATTCTGTTATTTCAGATGCATACGCCGGCCTTAGAGAATCTGTGCAGATAAAACTGGAAAACAAAAGAA...........................................................................................................................ATTATCATCCAGTGCCAGCTTTCTACACTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262010" ref_strand="+" ref_description="SGN-E262010 [cLEG-58-J5]">
      <seq>tttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgttattcataccaaaggtgcatgacagggcgcaagtattcatttcatgcccttcagacaactatgacgaaaatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgttgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcaaaagaataattctgttatttcagatgcatacaccgaccttagagaatctgtgcagataaaacttaaaaacaaaagaaattatcatccagtgccagctttctacattggtcatcttacaggtgatgaagtaaaagacacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33962" stop="29432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33765" g_stop="33756" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="82" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="232" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="283" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="449" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29732" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="515" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E262010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33765" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTT</genome_strand>
        <mrna_strand>TTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA...........................................................................................................................ATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGGTGATGAAGTAAAAGACACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258842" ref_strand="+" ref_description="SGN-E258842 [cLEG-41-E13]">
      <seq>tttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgttattcataccaaaggtgcatgacagggcgcaagtattcatttcatgcccttcagacaactatgacgaaaatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaaaatatggggcgtataaattatgggaaatacatttttgacaagaagggtatactctctcctgtttatttagatggtaaaccgttgcagaagtggaaaatgttgccgattccttttcacaacctaaatgaggatcaaaagaataattctgttatttcagatgcatacaccgaccttagagaatctgtgcagataaaacttaaaaacaaaagaaattatcatccaatgccagctttctacattggtcatcttacagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33962" stop="29450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33765" g_stop="33756" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="82" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="232" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31443" g_stop="31393" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="283" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30086" g_stop="29921" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="449" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29750" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="497" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E258842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33765" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
          <exon e_start="31443" e_stop="31393"/>
          <exon e_start="30086" e_stop="29921"/>
          <exon e_start="29797" e_stop="29750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTGGTACATAGTACTCTCTGTTCTTCATTTCTAACTAGGCTTTTGAGTTATGCTATGATCTCGTCTGGAGATAGACTGTATTGTAAATTACAAAAATGGAATTTTTGTTGATATTGATAAAATTTTAAGAAAATTCTTTCAGAAAAATAGAGCACAGATCCGCAACCAGTGCTGCATTTTTAGAGGATTGTAATAAAATAGATTAAATTGGTTTACAATGGGTAATACAATTAAAAGGGCAATTAGTAAGAGGAGTTCTTATCGGAAAATTATCCAAGAATCTGTAACACAATAATCTTTGTTTGCTCCAAATTTAAAAACAAAACAAAACAATGACAGTCCACAAGATCACTAAGAATGTTGTTTGTATACATGTAAGAATTACCTTTTCATACCAACCGGTGCTCTTCTGCTGTTATATCTCCATGTTGTGAAGAAATATTAGGATATAGGGAGAAAAAGTCAAAAAAAGGTTTTGGAAGACTGTACCAGTATTCATATTGTGGAATATATGGAAGGAGAGAAATGGAAGGATTTTTGAAAGTAGATCAAACTCCATACAGAAAATTGTATTACCTCTCTATGTTTTTGGTGTAAAGAATAATGTATAGATAGTGGACTTCTTTGGAGTTTTGTAATTACTTCCTTCTTGTAATCGTACTTTTCGAGGTGACTAGCACACATAGAAAAGTATCACTGCCTGAAAATTCCTCATCCTAGCACCTTTCTCAGTGAATGTTTTTCTTGAATTATATTTTCCCCCTTAAACTCTTCAAAACTAGCTTTGGCACGGCTCTCCTTAAATTTTCAGCGAAGTAGCTGACAGAAGAAAGTCCCTTCTTCATCGCTCCCTTCTCCTTCTTGGTGTCCTCGGCGTGTTCCCTAATGTGTCCTGTTTATTTTTTCAGAAAAAACATAAAGGAAAATGATCTATTTTCATAAAATTCCATTTTTTTTGTGGTCACTTTTAAGAGAAATAACTAAGATGGATCCTACTCCCAGCAGCTTTCCTTTTCTTTGGTAATATCTTTTTGTCCCAAATTCCCTGTTGATCTCTTTTCTCCTTTTTTCGTGCTTGCTCTACAGTTTTTCCTCGTCTGTTGTGGTTGTGAAGCAAAAATAAAGAATAGAAAAGGAGAGTGGATGAACAAAGAAATTCCGCATCATGGATTAAAGAGGGGGGGGGGGGAGAGAGAGCCGAAGGGGAGACGAAAAATAATGAAAAAGGAAAACAAGAGAAAGTAGAGGATGGATGTAGGAGATGGGGAATGAGAAAAAAGAGAAGAGGATAAATGGTCCATTGTGCTACTGTAACTTGGAAAGACACCTTTAACTGTTCAACCTATACATGTAAGTGAACTTCAATGAAAAGGAGCAACTGCTTAATTTCTGTAACTGGACCATTTCTCCAAAAAGGAAAAAGCGAAAATGAACAAACTGTATCATTTTTTAAAGCAATTGCCATTTCCAGTAATTTATTCACATTTCAGTTTGCTACTAATGAATGATGACGGCAAATCTCATCTGATCATTTTGTCTACTACTTCGTTATTCCCTTGTTTTACAGGTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAGGTTAGTTCAGAATAGTTTGCATTTACTTCCATAGTCATCTGAGGTATTGGGGGCACATTTTACCCATGAATTCTGGAAACTTTCTAAAATTTGTACATTTGTATAAATGAAATATGAAGCAAAATGATCCGATTATGGTAGAAAGACAAAATATGGATCTTAAAGTCTTGCTGGATTCGAATTCACGGTTCTGCATGATCAAATATAAGCATCACCTAATTGTGCTACTTAAGAAAAGCTTGATTTATGTTAAAAACTTTTGCACGAGTGAGTTAAGAGAACACTTTCTTTTTGTTCTATATGTGAAGAAAATGGATTGTGGACGTAACACTGAAAGTCCATGAGGTGAGAATTATCCTCGACTTTATATAGAGCTTACAGCCCTTAACCCCTCAACCAGTGGAATCCCCCTTACTCCCAGGATGAACATTTGTAGCATGTACAACATTAAATGAATAAGTGAAGTACAAACTGTTTCAATATCCGGTTCTTTGCTTTGTTGAGAAGTATATGCACAAGATGATAGATACAAAATACCACTGGAAGGACATAGAAGATGAGCTAGGTGCTGAATAACAATCGGGTGCATTATCATCTGAATACTTTTCTTAATATAAATAGCAAATTGATTACAAATTTCAGCACAAAGGCCTTGAAAGATAGAAAATAATTCAACTCTATTTTTCATTAAAAATAATCAACTGTAACAAAATCTATGTTGTTCGGGTATGGATGTGAGAACCCCGCAATGCCGATCTCAAAGTTGGATTTGTGATAGCCTAAATCTTAAGATTTGGGGATATGGATAGGGCCATGAGTATGAGTGTTAAGACGTATATCACTGCATATATACTGTATAAACATATGTTTTTGGAAATTAATTGACATTATTAAATTAAAGCTCGTATAAATTCTTTGTAATCTTTTATTCATAAATTATCTCGTTTAATTCCAAGTATTTATAGTGTAATATTTGGTGTCTCTGTATTTAACTCAACTCGAATACCCAATCAGCTAAACTTGTTGAAGAGATCTTGGACGTAGGTGTAAACAAAGAACCTAATGTAATTTGACCAAATCCAGTGGAGATGCCTACACTCACATCTAAATAATTCTTTACAAGAGTAATGTAACCTTTTGCATTTCCACTATAGGTACAGTTAATATACTTCAGCTGTTCAGCACATCTTCCTTTCATTTTTTTAGTTTTGTCAAGTTGCCTTTGCCTTTCTATTTTTTCCCGCTTCTTTTTTCTGACTTCTTCCTCATAATCTTAAAGGTATAAAATTTTGAACTTGATTTGCAGGGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAAGTAAGTCTGGAATTATTAGTTAAAAATGTTGGTGAATGGTAGAAGTTTCAAGTTCTCATACTGTTTAAGATTCAGCACAGTGCGAGAGAATGGTGGATAGTGACAGTATTCATTCTTTTGCAGATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATG</genome_strand>
        <mrna_strand>TTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA...........................................................................................................................ATTATCATCCAATGCCAGCTTTCTACATTGGTCATCTTACAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318144" ref_strand="+" ref_description="SGN-E318144 [cTOA-29-C7]">
      <seq>ggagttctacactggttggctcacgcactggagtgagagcatattgcaaatactgatgcaactgttacagcatcttacttagaaaggatcttgtcaaaaaatggatcagctgtgctctacatggcacatggtggaacaaatttcgggttctatagtggtgcaaatactggtgcagatgagactgattacaagcctgatcttacatcctatgattatgatgcacctatcaaagaatctggagatatagacaatccaaaatatcaagctcttcgaagggtgattgctaaatatactgcagttcctcttccttcagatccttccaatactgaaaagaaagcatatggacttattaagttgcagaagactaaatcattgtttaacatagttgatacctcatactttgatggtgtcactgaatctgaaaacccacttgcaatggagtctttggaccagatgtttggcttcatgctttatgtttctgattacaaagcaaaagctaatggaggtttgctattcataccaaaggtgcatgacaagtcgcaagtattcatttcatgcccttcagacaactatgacgacgatccagaatatgtaggcactgtagctagatggtcaaatacttccatcaggcttcctcatactcaatgtacttcggataacagaatttatatactggtggaacatatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35728" stop="32706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35428" g_stop="35311" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35310" i_stop="35237" i_length="74">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.337" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35236" g_stop="35141" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="216" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35140" i_stop="35066" i_length="75">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35065" g_stop="35017" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="265" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35016" i_stop="33944" i_length="1073">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33943" g_stop="33756" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="453" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33654" g_stop="33583" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="525" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33157" g_stop="33008" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="675" r_length="150" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E318144" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35428" e_stop="35311"/>
          <exon e_start="35236" e_stop="35141"/>
          <exon e_start="35065" e_stop="35017"/>
          <exon e_start="33943" e_stop="33756"/>
          <exon e_start="33654" e_stop="33583"/>
          <exon e_start="33157" e_stop="33008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTACACTGGTTGGCTCACGCACTGG-G-GAGAGCATATTGCAAATACTGATGCAACTGTTACAGCATCTTACTTAGAAAGGATCTTGTCAAAAAATGGATCAGCTGTGCTCTACGTGAGTTTCTAATTCTTCTTTTACTATAGTGACATACCATTTTTTGATACCAAGCTAATTAATACTTCTCCTAGATGGCACATGGTGGAACAAATTTCGGGTTCTATAGTGGTGCAAATACTGGTGCAGATGAGACTGATTACAAGCCTGATCTTACATCCTATGATTATGTGAGGAAGTTCCCAATATTTTTCTGTTAAAGTTTGTTGCTCTATCATAATCAAACTGAAAACCATCTTGTTCAGGATGCACCTATCAAAGAATCTGGAGATATAGACAATCCAAAATATCAAGGTGTACTAATCTGAATATATACGTGTGCTCATGCTTTAATTTATCTTGAGAAAGTTTTTTTCTTCGTCATCTTTTAACTTATTATGGGAACATTTCTCTGAAATTGTACCAATGGTTAAATCCTTGGTCATGGAGCAACCTGTATATTGTATTTTACCAGCTTTTACTTTACTGCTAATTGGCCTAATGTGTTTTTGAAGTTTATGTTTTGTTTGTTTTCGCTTGTCCCTTCCCATGGAATTGATTTTGCACTGGTGGATGACTGAATTTTACTAGATTAGAGTATTAAAGGGGTGTAAGAGATTTTCACTTTTCAGTTTTGGACTCTCTTTTCTGTTCTTTTGTTTTTTCTTTTCCCTTAGAAGGAAGAAACACTATCATGGAAAGTGAATGATGACTATCTTTGTTCTCTCGAATGATCAAATTATTTTATATCCATCAATTGTTTCCTCTTAATAGCATAACAACCAAGGGCCTAGACAATTTAAAAAGAAGTATTTTTTTAGCATCCAATGTAGGATAGGAGAAACATTAAGAATCTCTCCGTGTTAGACTATGAATTTGTAGGAGAAGTATGCAATATGTTCCTATTGTCATACACTGCAACAGAGAACAACCAGGCTTGCATATGTCACTTATGAGAAGACTCATACAGTCTGAAGCAGAAATTTCTTAGAACATTGTTTAGAGCTAACAAGGAAAAAAAAGGAAGTTGATGTCTGTTTAGAATATTTGGGTCCATTGGCACCCAAGGGTGCGGCGTAGTGGCCAATGAAGTGGGATGGAACCAATATATACTGGCGTTCAAACCCTAACATAGACAAAAAATGTTAAGTAAAATCTTCCCATCCGCCTAAGCTACTTGTGATGGTAGGAGGAAACAAGTACTCAGTGGAATAGTCTAAGTTTGTGTAAACTGGTCCAAGAAGAGTTTTTGGGCTCATTGCAGCTTTAACTTTTGTTTTTTTTAATTTGAAGTAGACACCAACTAAGTATCCCTTATGCCTAGAAAGCATCACTTCAATGAAAATTTTCTGTTAGCTACCTAATTATTTATCATTTATAACTTTCAGCTCTTCGAAGGGTGATTGCTAAATATACTGCAGTTCCTCTTCCTTCAGTTCCTTCCAATACTGAAAAGAAAGCATATGGACTTATTAAGTTGCAGAAGACTAAATCATTGTTTAACATAGTTGATACCACATACTTTGATGGTGTCACTGAATCTGAAAACCCACTTGCAATGGAGTCTTTGGACCAGGTATAAAACACTCCTGTCATTGGATGCATTATTCATAGGTCTGAGTTTGTTGAGTGCCTGTAGGATATAATTTACCTCTTTCAATGTTTTTGCTTGTTCAGATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAGGTTAGTGGTTTTGTTATATCACTGGAAAGCCTTCTTTCATGTAAGTGTTTTCTTGAGCTGGGTTGAAAGTGTCCATTTTATTAGTACTGGTAAATGGTTTTCACTTAAACAAACTGTATTCTTTTCTACTTCCACTTCCGAGATTTACTGATGAGAACAGAGCTATCCTTTTGTGTCTCATTCGTGCAGGTAGTACCTGAATTTCTTCTCCCTTACAAAGAAGCTATATCCATGCAATAGAATAATATGTTCAATACACTTTGTCCATCGTGTAATATGATAATGTGTGTGTTAGCCTCTTTGGGTTTCGGTCTTAGCTTGTAAATTTTTTCTTTCAGAAGGAAAGGAAGTTTTATATATGTATTTTATATTTATTTTTTCACTGTCTCAACACTATAAAGGAATGACTCAATATAATTTTGCAGGTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG</genome_strand>
        <mrna_strand>GGAGTTCTACACTGGTTGGCTCACGCACTGGAGTGAGAGCATATTGCAAATACTGATGCAACTGTTACAGCATCTTACTTAGAAAGGATCTTGTCAAAAAATGGATCAGCTGTGCTCTAC..........................................................................ATGGCACATGGTGGAACAAATTTCGGGTTCTATAGTGGTGCAAATACTGGTGCAGATGAGACTGATTACAAGCCTGATCTTACATCCTATGATTAT...........................................................................GATGCACCTATCAAAGAATCTGGAGATATAGACAATCCAAAATATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCGAAGGGTGATTGCTAAATATACTGCAGTTCCTCTTCCTTCAGATCCTTCCAATACTGAAAAGAAAGCATATGGACTTATTAAGTTGCAGAAGACTAAATCATTGTTTAACATAGTTGATACCTCATACTTTGATGGTGTCACTGAATCTGAAAACCCACTTGCAATGGAGTCTTTGGACCAG.....................................................................................................ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGCTATTCATACCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGACAAGTCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGACGATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212140" ref_strand="+" ref_description="SGN-E212140 [cLEC-75-N11]">
      <seq>atgcaccagggaaatcaccaccgctttcaacgttagtgtctttttgtttattccttttctatctctcatcagatgctactaatgatgttgataagtttggtttctagggagttctacactggttggctcacgcactggggagagcatattgcaaatactgatgcaactgttacagcatcttacttagaaaggatcttgtcaaaaaatggatcagctgtgctctacatggcacatggtggaacaaatttcgggttctatagtggtgcaaatactggtgcagatgagactgattacaagcctgatcttacatcctatgattatgtgaggaagttcccaatatttttctgttaaagtttgttgctctatcataatcaaactgaaaaccatcttgttcaggatgcacctatcaaagaatctggagatatagacaatccaaaatatcaagctcttcgaagggtgattgctaaatatactgcagttcctcttccttcagttcctttcaatactgaaaagaaagcatatggactttattagttgcagaagactaaatcattgtttaacatagttgataccacatactttgatggtgtcactgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35835" stop="33489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35535" g_stop="35311" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35310" i_stop="35237" i_length="74">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.337" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35236" g_stop="35017" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="445" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35016" i_stop="33944" i_length="1073">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33943" g_stop="33789" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="600" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E212140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35535" e_stop="35311"/>
          <exon e_start="35236" e_stop="35017"/>
          <exon e_start="33943" e_stop="33789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACCAGGGAAATCACCACCGCTTTCAACGTTAGTGTCTTTTTGTTTATTCCTTTTCTATCTCTCATCAGATGCTACTAATGATGTTGATAAGTTTGGTTTCTAGGGAGTTCTACACTGGTTGGCTCACGCACTGGGGAGAGCATATTGCAAATACTGATGCAACTGTTACAGCATCTTACTTAGAAAGGATCTTGTCAAAAAATGGATCAGCTGTGCTCTACGTGAGTTTCTAATTCTTCTTTTACTATAGTGACATACCATTTTTTGATACCAAGCTAATTAATACTTCTCCTAGATGGCACATGGTGGAACAAATTTCGGGTTCTATAGTGGTGCAAATACTGGTGCAGATGAGACTGATTACAAGCCTGATCTTACATCCTATGATTATGTGAGGAAGTTCCCAATATTTTTCTGTTAAAGTTTGTTGCTCTATCATAATCAAACTGAAAACCATCTTGTTCAGGATGCACCTATCAAAGAATCTGGAGATATAGACAATCCAAAATATCAAGGTGTACTAATCTGAATATATACGTGTGCTCATGCTTTAATTTATCTTGAGAAAGTTTTTTTCTTCGTCATCTTTTAACTTATTATGGGAACATTTCTCTGAAATTGTACCAATGGTTAAATCCTTGGTCATGGAGCAACCTGTATATTGTATTTTACCAGCTTTTACTTTACTGCTAATTGGCCTAATGTGTTTTTGAAGTTTATGTTTTGTTTGTTTTCGCTTGTCCCTTCCCATGGAATTGATTTTGCACTGGTGGATGACTGAATTTTACTAGATTAGAGTATTAAAGGGGTGTAAGAGATTTTCACTTTTCAGTTTTGGACTCTCTTTTCTGTTCTTTTGTTTTTTCTTTTCCCTTAGAAGGAAGAAACACTATCATGGAAAGTGAATGATGACTATCTTTGTTCTCTCGAATGATCAAATTATTTTATATCCATCAATTGTTTCCTCTTAATAGCATAACAACCAAGGGCCTAGACAATTTAAAAAGAAGTATTTTTTTAGCATCCAATGTAGGATAGGAGAAACATTAAGAATCTCTCCGTGTTAGACTATGAATTTGTAGGAGAAGTATGCAATATGTTCCTATTGTCATACACTGCAACAGAGAACAACCAGGCTTGCATATGTCACTTATGAGAAGACTCATACAGTCTGAAGCAGAAATTTCTTAGAACATTGTTTAGAGCTAACAAGGAAAAAAAAGGAAGTTGATGTCTGTTTAGAATATTTGGGTCCATTGGCACCCAAGGGTGCGGCGTAGTGGCCAATGAAGTGGGATGGAACCAATATATACTGGCGTTCAAACCCTAACATAGACAAAAAATGTTAAGTAAAATCTTCCCATCCGCCTAAGCTACTTGTGATGGTAGGAGGAAACAAGTACTCAGTGGAATAGTCTAAGTTTGTGTAAACTGGTCCAAGAAGAGTTTTTGGGCTCATTGCAGCTTTAACTTTTGTTTTTTTTAATTTGAAGTAGACACCAACTAAGTATCCCTTATGCCTAGAAAGCATCACTTCAATGAAAATTTTCTGTTAGCTACCTAATTATTTATCATTTATAACTTTCAGCTCTTCGAAGGGTGATTGCTAAATATACTGCAGTTCCTCTTCCTTCAGTTCCTTCCAATACTGAAAAGAAAGCATATGGACTTATTAAGTTGCAGAAGACTAAATCATTGTTTAACATAGTTGATACCACATACTTTGATGGTGTCACTGAATCT</genome_strand>
        <mrna_strand>ATGCACCAGGGAAATCACCACCGCTTTCAACGTTAGTGTCTTTTTGTTTATTCCTTTTCTATCTCTCATCAGATGCTACTAATGATGTTGATAAGTTTGGTTTCTAGGGAGTTCTACACTGGTTGGCTCACGCACTGGGGAGAGCATATTGCAAATACTGATGCAACTGTTACAGCATCTTACTTAGAAAGGATCTTGTCAAAAAATGGATCAGCTGTGCTCTAC..........................................................................ATGGCACATGGTGGAACAAATTTCGGGTTCTATAGTGGTGCAAATACTGGTGCAGATGAGACTGATTACAAGCCTGATCTTACATCCTATGATTATGTGAGGAAGTTCCCAATATTTTTCTGTTAAAGTTTGTTGCTCTATCATAATCAAACTGAAAACCATCTTGTTCAGGATGCACCTATCAAAGAATCTGGAGATATAGACAATCCAAAATATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCGAAGGGTGATTGCTAAATATACTGCAGTTCCTCTTCCTTCAGTTCCTTTCAATACTGAAAAGAAAGCATATGGACTTTATTAGTTGCAGAAGACTAAATCATTGTTTAACATAGTTGATACCACATACTTTGATGGTGTCACTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315122" ref_strand="+" ref_description="SGN-E315122 [cTOA-24-O23]">
      <seq>agacacaaacattatctctttatcagggtaagactcattccgattcttgatttgatcaatgttgggcctcggtattatattctccacattttagttgccagactggcatatgagggtgttggatatcccagatttgggggatgggatgggatgctttggtttagttataaggtcttagaaatcctctagattttggaagttgagttagttcaagtttcatttgtcgttctttatcttgatatatgttgcttggactcttcaaaattgtcataagttcatgttggattctccgtaagtactgtatgttttaagaatccgacacgggtgcggcattgaaactaaaaaatctgcacaacttagatcatggtaatggtctgaccttttcttctcagattgttcttgtattctctagtctgttggtaattgatttatttctgatgctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39429" stop="38480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39129" g_stop="38683" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E315122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39129" e_stop="38683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACAAACATTATCTCTTTATCAGGGTAAGACTCATTCCGATTCTTGATTTGATCAATGTTGGGCCTCGGTATTATATTCTCCACATTTTAGTTGCCAGACTGGCATATGAGGGTGTTGGATATCCCAGATTTGGGGGATGGGATGGGATGCTTTGGTTTAGTTATAAGGTCTTAGAAATCCTCTAGATTTTGGAAGTTGAGTTAGTTCAAGTTTCATTTGTCGTTCTTTATCTTGATATATGTTGCTTGGACTCTTCAAAATTGTCATAAGTTCATGTTGGATTCTCCGTAAGTACTGTATGTTTTAAGAATCCGACACGGGTGCGGCATTGAAACTAAAAAATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGACACAAACATTATCTCTTTATCAGGGTAAGACTCATTCCGATTCTTGATTTGATCAATGTTGGGCCTCGGTATTATATTCTCCACATTTTAGTTGCCAGACTGGCATATGAGGGTGTTGGATATCCCAGATTTGGGGGATGGGATGGGATGCTTTGGTTTAGTTATAAGGTCTTAGAAATCCTCTAGATTTTGGAAGTTGAGTTAGTTCAAGTTTCATTTGTCGTTCTTTATCTTGATATATGTTGCTTGGACTCTTCAAAATTGTCATAAGTTCATGTTGGATTCTCCGTAAGTACTGTATGTTTTAAGAATCCGACACGGGTGCGGCATTGAAACTAAAAAATCTGCACAACTTAGATCATGGTAATGGTCTGACCTTTTCTTCTCAGATTGTTCTTGTATTCTCTAGTCTGTTGGTAATTGATTTATTTCTGATGCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733834" ref_strand="+" ref_description="SGN-E733834 [LB11AC09]">
      <seq>ctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgacactcacttccaggctttttccatctctctcctctcactctcagtctccgattcgtcttgatttaccccagttcgacgacattgattcgttcaagaaggtttccactgaaggtttcttataccctacaggacttccttcactgccctttttcctccctgacgttgatgattcttcatcgagtgggatgcttttgtttcctaagagaacctaccaacccagcaacatgaggcgcaaaaggacacatggttactttgctcgcaaagcaactaagggtgggcgtagagttattgctcgacgtattgcaaagggtcgatcaagaataacagcataacaacattttttgttgcatggtttacaaggtgtacggagcaaggctagaaggctggtttagggcatttctcggccagttaaataggttatgttgcaacgattgaaaacaatgggatcaggaggtgatgttttgatgatcctcaaactggatttttgtacttaggctcttacttcccagctttgtccccaaactcttcttaatatttttccaagctggttttatttcccttaaagatatgttttgatctgtaataaggaattcatctttactgtacctaagggtccttgagattgacgtatgagcaaaatctatattttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44193" stop="40411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43893" g_stop="43663" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41541" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="328" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41540" i_stop="41104" i_length="437">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41103" g_stop="40711" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="721" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40710" i_stop="40491" i_length="220">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40490" g_stop="40478" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="734" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E733834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43893" e_stop="43663"/>
          <exon e_start="41637" e_stop="41541"/>
          <exon e_start="41103" e_stop="40711"/>
          <exon e_start="40490" e_stop="40478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACGGTAAATTCCCTCTCTATATTTGAGACTATACTATACATTTGCGTAATGATGGTATTTAGCTGGAACGTTGAGGTACATTGTACTTTTATTATTTCATTTTGTGATACGAAATGGGTTGTGAATATACCGGATGCATATAGCTGAGCTCAACTAGGTTGGAAATTGTTGCATAGTTGAATTATTGTTTTACATTCTTTTTTTTCTGAGAAGTTGAGCATTTAGAAGTTCCGTTGCACTGTAGGTTGCTAATTGATTGAATTTCAAATGCAATGACAGTTGTTCCAATTCTAGCCTATTGCTTCTTTTTAGGTTCACACTTAACTGAACAATTTGATCTAATTAGATCACTGGAAAAAGATTTCTTTTTTCTCTAGGAAAAGATGGTATGCCTGACCAATCCATTTAAGGCTGCAGTCTGTACCATGGGTTGGTAAACTGATAGAAGTCACCTCTGCGAGTTTCTTGAGCCACTGCCTGTTCAAGTTCATTGATAACTTACAGTCAGATTATGCTGAAAGTGGATGTGCTGGATTGAAATATAGCATGGTGAAACAGGTTAAGTTAAACCAAAGATGAGCTATAGTCCAACCTCTTGAAGTCTATGTGTCGATTAAAGGTTGGGTTTCAAATATATAAAATAATAAGTGGTGACAACTTGCCCACCTCAACCCATTGTGGGGTTGCACAAATTGCTATCATAAAACTACAATTTACTAATTATTTGTCTTGATAAACTTTTGTTCGTTTTCAATGCTACAGAATTTTGCAACTAATTGTTAAACTTTAAACATTGTGATGTTGGTATCGTCCTCTGAATATTATGTCTATTTAAAGTGGTCTATTAAAAGGAACAGTGAGCTGTTAGCAACTCCTTCTTCAACCTAAATAGACAAAGAGTTTAGTTGTCTGTGAAAACTAGCTTAGTACTTTTTTGTACTAGGATGAAAAGGAGTTCTCATATCTTAAAAGATATATGAATTGAAAAAAGAAGTACCTAGAGGCTAGATGTAACCTGTTAGGTTGCCGATTTTTAGCTCATTGTAATACAATATTCTGACAGGCCATGAGTGTTAATTCATAGTTTAACAGTATCGGTGTCAAATGGGTGGGTTGGACTGGATTTGGGCGGGCCAAAATGAGTTGGGCTAAAAGATGGCTCAAAAGTTCTTGGGATGAAACTGGTTGTGCTAAAATAGGTTGGGTCATGACCCACACAACTTGGCACAATCTTCTTAACTGATTTATTTCTGCTAAAAGTGGAAATAGTTTTCATTCATTATGGTTACACCATTTATACATCCAAAGACAGTAAATCTTCGATTCGGAAAAGTTACTGCACATTCCAAAAACAAACTCAGTACTTGAATTTATATTCAATGGTCATTGCAGTTCTCGTTGTTCCCTGCATTCTAACTGGAATTTGGAGAATGTTCTCTGAAGAAGTTAGGAAACAAGAATTATCTTGATTTGTTACCTTCTCAAAATAAGAAGAATTATCTTGAATTTAGACAATCTTATATAGAGTTGATAGTTGTATGGAGGCTCTTTTTTGTCTACTTGGTTGCTTTCTGATGAGTCAAATTTACGTAGATGTTAGACAATTATATTCAGAGTTGATAGCAACCAAATGAACAAAAAAGAGCCTCCATACAACTATCAACTCTATCTTCTTTCGAGGTGATACCTGTATGAAGGAACTTTTTTTGGCTATCTGGTTGCTATACGCTTCTATAACTAGTTATTGTTGTTTAATTAAGTTTCCTAATGACTAAAAAGCTTGGGAAATAAGAAATTAAACTTGTTATATAACTCTTAGTTATTTGCACCTTCGTTGGACCGGTAATTATTGCTGTAAAAAATTATTAACAATTGACATTATTATTTGTTAGTGTCAAAAATTGACATTATTATTAGTCATTTCATCTGTATCCATTTCAACCATCAGAGACTTACATACAAAGAATCATGGAATTAACCTGGTTTTACATGAGTTATTGAGTCGTTCTTCTATGTCTGTTCATGCAGTTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCGGTATGCATCTCTTCCTTGCTCTTTTAGCCACTGGACTAATGAGACACATTCTCATGAGAATAGCATTATGCACCATATGGCACCTATTTTAGCTTTTTGGGTCTTTTAGTTGTTGAAAGAATATGTACTAGACCACTTTTGTTTCTCTTCCTGTTTCTGGTAACTGTAGAATTACGACATATAATACATTCTCCAGAACTCAAGTATATCCCATGTAATGCTAGGCTTAATACGTAGCCCAGGATTCTGGTGGGCTCTCATCCTGACAATGAAAATTAGCTTTCATGTGCCTCCCAGTTTACCTGATCAGCATAGTCATTTGTTTGTCCAGCTAGTTCCATTTTCTCGGGTCACTTGCTTTTACTGGAGATTTTTTGTCTGGATTGCTTGTGTTATTTGTTGAGATCTGACAAGCGCATATTTTAATTATTGAGCAGCAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGAGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTAAAGATATGTTTTGATCTGTAATAAGGAATTCATCTTTACTGTACCTAAGGGTCCTTGAGATTGACGTATGAGCAAAATCTATATTTTGAAGTTGTGATCTTGGCAAGGTCAAATTTCTGACATTTTTTTTTATTGATGTTGAGACCTTGGCAAAGATCAAACATTGGACATTCTTTACCTAAATTTGGACATTGACAAGATAAAACTTCAAGGTCAATTTAAGACATTTTTTATTGAAGTTGAGGCCATGACAAGATCCACTTCTTATACTTTAATTGTTATAAATTCAACTAATATTGTTGTACAACAGTTAAGAAGAAAAA</genome_strand>
        <mrna_strand>CTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGAGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTAAAGATATGTTTTGATCTGTAATAAGGAATTCATCTTTACTGTACCTAAGGGTCCTTGAGATTGACGTATGAGCAAAATCTATATTTTGAA............................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718197" ref_strand="+" ref_description="SGN-E718197 [FC03DH11]">
      <seq>gggtggaaactggaacgacttggagaagtagatactgtgttagggtttagcttccttctgtgtatcaactgtgtgtgaaaatgtcgtcgtcgtcgaaaactttaattcggacgggcgtttctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgacactcacttccaggctttttccatctctctcctctcactctcagtctccgattcgtcttgatttaccccagttcgacgacattgattcgttcaagaaggtttccactgaaggtttcttataccctacaggacttccttcactgccctttttcctccctgacgttgatgattcttcatcgagtgggatgcttttgtttcctaagagaacctaccaacccagcaacatgaggcgcaaaaggacacatggttactttgctcgcaaagcaactaagggtgggcgtagagttattgctcgacgtattgcaaagggtcgatcaagaataacagcataacaacattttttgttgcatggtttacaaggtgtacggagcaaggctagaaggctggtttagggcatttctcggccagttaaataggttatgttgcaacgattgaaaacaatgggatcaggaggtgatgttttgatgatcctcaaactggatttttgtacttaggctcttacttcccagctttgtccccaaactcttcttaatatttttccaagctggttttatttcccttaaagatatgttttgatctgtaataaggaattcatctttactgtacctaagggtccttgagattgacgtatgagcaaaatctatattttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44312" stop="40411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44013" g_stop="43663" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41541" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="448" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41540" i_stop="41104" i_length="437">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41103" g_stop="40710" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="842" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E718197" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44013" e_stop="43663"/>
          <exon e_start="41637" e_stop="41541"/>
          <exon e_start="41103" e_stop="40710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGAAACTGGAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACGGTAAATTCCCTCTCTATATTTGAGACTATACTATACATTTGCGTAATGATGGTATTTAGCTGGAACGTTGAGGTACATTGTACTTTTATTATTTCATTTTGTGATACGAAATGGGTTGTGAATATACCGGATGCATATAGCTGAGCTCAACTAGGTTGGAAATTGTTGCATAGTTGAATTATTGTTTTACATTCTTTTTTTTCTGAGAAGTTGAGCATTTAGAAGTTCCGTTGCACTGTAGGTTGCTAATTGATTGAATTTCAAATGCAATGACAGTTGTTCCAATTCTAGCCTATTGCTTCTTTTTAGGTTCACACTTAACTGAACAATTTGATCTAATTAGATCACTGGAAAAAGATTTCTTTTTTCTCTAGGAAAAGATGGTATGCCTGACCAATCCATTTAAGGCTGCAGTCTGTACCATGGGTTGGTAAACTGATAGAAGTCACCTCTGCGAGTTTCTTGAGCCACTGCCTGTTCAAGTTCATTGATAACTTACAGTCAGATTATGCTGAAAGTGGATGTGCTGGATTGAAATATAGCATGGTGAAACAGGTTAAGTTAAACCAAAGATGAGCTATAGTCCAACCTCTTGAAGTCTATGTGTCGATTAAAGGTTGGGTTTCAAATATATAAAATAATAAGTGGTGACAACTTGCCCACCTCAACCCATTGTGGGGTTGCACAAATTGCTATCATAAAACTACAATTTACTAATTATTTGTCTTGATAAACTTTTGTTCGTTTTCAATGCTACAGAATTTTGCAACTAATTGTTAAACTTTAAACATTGTGATGTTGGTATCGTCCTCTGAATATTATGTCTATTTAAAGTGGTCTATTAAAAGGAACAGTGAGCTGTTAGCAACTCCTTCTTCAACCTAAATAGACAAAGAGTTTAGTTGTCTGTGAAAACTAGCTTAGTACTTTTTTGTACTAGGATGAAAAGGAGTTCTCATATCTTAAAAGATATATGAATTGAAAAAAGAAGTACCTAGAGGCTAGATGTAACCTGTTAGGTTGCCGATTTTTAGCTCATTGTAATACAATATTCTGACAGGCCATGAGTGTTAATTCATAGTTTAACAGTATCGGTGTCAAATGGGTGGGTTGGACTGGATTTGGGCGGGCCAAAATGAGTTGGGCTAAAAGATGGCTCAAAAGTTCTTGGGATGAAACTGGTTGTGCTAAAATAGGTTGGGTCATGACCCACACAACTTGGCACAATCTTCTTAACTGATTTATTTCTGCTAAAAGTGGAAATAGTTTTCATTCATTATGGTTACACCATTTATACATCCAAAGACAGTAAATCTTCGATTCGGAAAAGTTACTGCACATTCCAAAAACAAACTCAGTACTTGAATTTATATTCAATGGTCATTGCAGTTCTCGTTGTTCCCTGCATTCTAACTGGAATTTGGAGAATGTTCTCTGAAGAAGTTAGGAAACAAGAATTATCTTGATTTGTTACCTTCTCAAAATAAGAAGAATTATCTTGAATTTAGACAATCTTATATAGAGTTGATAGTTGTATGGAGGCTCTTTTTTGTCTACTTGGTTGCTTTCTGATGAGTCAAATTTACGTAGATGTTAGACAATTATATTCAGAGTTGATAGCAACCAAATGAACAAAAAAGAGCCTCCATACAACTATCAACTCTATCTTCTTTCGAGGTGATACCTGTATGAAGGAACTTTTTTTGGCTATCTGGTTGCTATACGCTTCTATAACTAGTTATTGTTGTTTAATTAAGTTTCCTAATGACTAAAAAGCTTGGGAAATAAGAAATTAAACTTGTTATATAACTCTTAGTTATTTGCACCTTCGTTGGACCGGTAATTATTGCTGTAAAAAATTATTAACAATTGACATTATTATTTGTTAGTGTCAAAAATTGACATTATTATTAGTCATTTCATCTGTATCCATTTCAACCATCAGAGACTTACATACAAAGAATCATGGAATTAACCTGGTTTTACATGAGTTATTGAGTCGTTCTTCTATGTCTGTTCATGCAGTTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCGGTATGCATCTCTTCCTTGCTCTTTTAGCCACTGGACTAATGAGACACATTCTCATGAGAATAGCATTATGCACCATATGGCACCTATTTTAGCTTTTTGGGTCTTTTAGTTGTTGAAAGAATATGTACTAGACCACTTTTGTTTCTCTTCCTGTTTCTGGTAACTGTAGAATTACGACATATAATACATTCTCCAGAACTCAAGTATATCCCATGTAATGCTAGGCTTAATACGTAGCCCAGGATTCTGGTGGGCTCTCATCCTGACAATGAAAATTAGCTTTCATGTGCCTCCCAGTTTACCTGATCAGCATAGTCATTTGTTTGTCCAGCTAGTTCCATTTTCTCGGGTCACTTGCTTTTACTGGAGATTTTTTGTCTGGATTGCTTGTGTTATTTGTTGAGATCTGACAAGCGCATATTTTAATTATTGAGCAGCAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGAGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTAAAGATATGTTTTGATCTGTAATAAGGAATTCATCTTTACTGTACCTAAGGGTCCTTGAGATTGACGTATGAGCAAAATCTATATTTTGAAG</genome_strand>
        <mrna_strand>GGGTGGAAACTGGAACGACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGAGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTAAAGATATGTTTTGATCTGTAATAAGGAATTCATCTTTACTGTACCTAAGGGTCCTTGAGATTGACGTATGAGCAAAATCTATATTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342822" ref_strand="+" ref_description="SGN-E342822 [cTOF-7-N19]">
      <seq>gaagaacttggagaagtagatactgtgttagggtttagcttccttctgtgtatcaactgtgtgtgaaaatgtcgtcgtcgtcgaaaactttaattcggacgggcgtttctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgacactcacttccaggctttttccatctctctcctctcactctcagtctccgattcgtcttgatttaccccagttcgacgacattgattcgttcaagaaggtttccactgaaggtttcttataccctacaggacttccttcactgccctttttcctccctgacgttgatgattcttcatcgagtgggatgcttttgtttcctaagagaacctaccaacccagcaacatgaggcgcaaaaggacacatggttactttgctcgcaaagcaactaagggtgggcgtagagttattgctcgacgtattgcaaagggtcgatcaagaataacagcataacaacattttttgttgcatggtttacaaggtgtacggagcaaggctagaaggctggtttagggcatttctcggccagttaaataggttatgttgcaacgattgaaacaatgggatcanganggtgatgttttgatgatcctcaaactggatttttgtacttaggctcttacttcccagctttgtcccaaactcttcttaatatttttccaagctggttttatttccctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44301" stop="40501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44001" g_stop="43663" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41541" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="436" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41540" i_stop="41104" i_length="437">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41103" g_stop="40801" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="738" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E342822" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44001" e_stop="43663"/>
          <exon e_start="41637" e_stop="41541"/>
          <exon e_start="41103" e_stop="40801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACGGTAAATTCCCTCTCTATATTTGAGACTATACTATACATTTGCGTAATGATGGTATTTAGCTGGAACGTTGAGGTACATTGTACTTTTATTATTTCATTTTGTGATACGAAATGGGTTGTGAATATACCGGATGCATATAGCTGAGCTCAACTAGGTTGGAAATTGTTGCATAGTTGAATTATTGTTTTACATTCTTTTTTTTCTGAGAAGTTGAGCATTTAGAAGTTCCGTTGCACTGTAGGTTGCTAATTGATTGAATTTCAAATGCAATGACAGTTGTTCCAATTCTAGCCTATTGCTTCTTTTTAGGTTCACACTTAACTGAACAATTTGATCTAATTAGATCACTGGAAAAAGATTTCTTTTTTCTCTAGGAAAAGATGGTATGCCTGACCAATCCATTTAAGGCTGCAGTCTGTACCATGGGTTGGTAAACTGATAGAAGTCACCTCTGCGAGTTTCTTGAGCCACTGCCTGTTCAAGTTCATTGATAACTTACAGTCAGATTATGCTGAAAGTGGATGTGCTGGATTGAAATATAGCATGGTGAAACAGGTTAAGTTAAACCAAAGATGAGCTATAGTCCAACCTCTTGAAGTCTATGTGTCGATTAAAGGTTGGGTTTCAAATATATAAAATAATAAGTGGTGACAACTTGCCCACCTCAACCCATTGTGGGGTTGCACAAATTGCTATCATAAAACTACAATTTACTAATTATTTGTCTTGATAAACTTTTGTTCGTTTTCAATGCTACAGAATTTTGCAACTAATTGTTAAACTTTAAACATTGTGATGTTGGTATCGTCCTCTGAATATTATGTCTATTTAAAGTGGTCTATTAAAAGGAACAGTGAGCTGTTAGCAACTCCTTCTTCAACCTAAATAGACAAAGAGTTTAGTTGTCTGTGAAAACTAGCTTAGTACTTTTTTGTACTAGGATGAAAAGGAGTTCTCATATCTTAAAAGATATATGAATTGAAAAAAGAAGTACCTAGAGGCTAGATGTAACCTGTTAGGTTGCCGATTTTTAGCTCATTGTAATACAATATTCTGACAGGCCATGAGTGTTAATTCATAGTTTAACAGTATCGGTGTCAAATGGGTGGGTTGGACTGGATTTGGGCGGGCCAAAATGAGTTGGGCTAAAAGATGGCTCAAAAGTTCTTGGGATGAAACTGGTTGTGCTAAAATAGGTTGGGTCATGACCCACACAACTTGGCACAATCTTCTTAACTGATTTATTTCTGCTAAAAGTGGAAATAGTTTTCATTCATTATGGTTACACCATTTATACATCCAAAGACAGTAAATCTTCGATTCGGAAAAGTTACTGCACATTCCAAAAACAAACTCAGTACTTGAATTTATATTCAATGGTCATTGCAGTTCTCGTTGTTCCCTGCATTCTAACTGGAATTTGGAGAATGTTCTCTGAAGAAGTTAGGAAACAAGAATTATCTTGATTTGTTACCTTCTCAAAATAAGAAGAATTATCTTGAATTTAGACAATCTTATATAGAGTTGATAGTTGTATGGAGGCTCTTTTTTGTCTACTTGGTTGCTTTCTGATGAGTCAAATTTACGTAGATGTTAGACAATTATATTCAGAGTTGATAGCAACCAAATGAACAAAAAAGAGCCTCCATACAACTATCAACTCTATCTTCTTTCGAGGTGATACCTGTATGAAGGAACTTTTTTTGGCTATCTGGTTGCTATACGCTTCTATAACTAGTTATTGTTGTTTAATTAAGTTTCCTAATGACTAAAAAGCTTGGGAAATAAGAAATTAAACTTGTTATATAACTCTTAGTTATTTGCACCTTCGTTGGACCGGTAATTATTGCTGTAAAAAATTATTAACAATTGACATTATTATTTGTTAGTGTCAAAAATTGACATTATTATTAGTCATTTCATCTGTATCCATTTCAACCATCAGAGACTTACATACAAAGAATCATGGAATTAACCTGGTTTTACATGAGTTATTGAGTCGTTCTTCTATGTCTGTTCATGCAGTTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCGGTATGCATCTCTTCCTTGCTCTTTTAGCCACTGGACTAATGAGACACATTCTCATGAGAATAGCATTATGCACCATATGGCACCTATTTTAGCTTTTTGGGTCTTTTAGTTGTTGAAAGAATATGTACTAGACCACTTTTGTTTCTCTTCCTGTTTCTGGTAACTGTAGAATTACGACATATAATACATTCTCCAGAACTCAAGTATATCCCATGTAATGCTAGGCTTAATACGTAGCCCAGGATTCTGGTGGGCTCTCATCCTGACAATGAAAATTAGCTTTCATGTGCCTCCCAGTTTACCTGATCAGCATAGTCATTTGTTTGTCCAGCTAGTTCCATTTTCTCGGGTCACTTGCTTTTACTGGAGATTTTTTGTCTGGATTGCTTGTGTTATTTGTTGAGATCTGACAAGCGCATATTTTAATTATTGAGCAGCAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGA-GGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTA</genome_strand>
        <mrna_strand>GAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTG-AAACAATGGGATCANGANGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGT-CCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365535" ref_strand="+" ref_description="SGN-E365535 [cLPT-12-M13]">
      <seq>aagtagatactgtgttagggtttagcttccttctgtatcgactgtgtgtgaaaatgtcgtcgtcgtcgaaaactttaattcggacgggcgtttctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgaccctcacttccaggctttttccatctctctcctctcactctcagtctccgattcgtcttgatttaccccagtccgacgttgattcgttcaagaaggtttctactgaaggtttcttataccctactggccttccttcactgccctttttactccctgacgttgatgagtcttcatcgagtgggatgcttttgtttcctaagagaacctaccaacccagcaacatgaggcgcataaggacacatggttactttgctcgcaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44288" stop="41234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43988" g_stop="43663" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41541" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="418" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E365535" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43988" e_stop="43663"/>
          <exon e_start="41637" e_stop="41541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACGGTAAATTCCCTCTCTATATTTGAGACTATACTATACATTTGCGTAATGATGGTATTTAGCTGGAACGTTGAGGTACATTGTACTTTTATTATTTCATTTTGTGATACGAAATGGGTTGTGAATATACCGGATGCATATAGCTGAGCTCAACTAGGTTGGAAATTGTTGCATAGTTGAATTATTGTTTTACATTCTTTTTTTTCTGAGAAGTTGAGCATTTAGAAGTTCCGTTGCACTGTAGGTTGCTAATTGATTGAATTTCAAATGCAATGACAGTTGTTCCAATTCTAGCCTATTGCTTCTTTTTAGGTTCACACTTAACTGAACAATTTGATCTAATTAGATCACTGGAAAAAGATTTCTTTTTTCTCTAGGAAAAGATGGTATGCCTGACCAATCCATTTAAGGCTGCAGTCTGTACCATGGGTTGGTAAACTGATAGAAGTCACCTCTGCGAGTTTCTTGAGCCACTGCCTGTTCAAGTTCATTGATAACTTACAGTCAGATTATGCTGAAAGTGGATGTGCTGGATTGAAATATAGCATGGTGAAACAGGTTAAGTTAAACCAAAGATGAGCTATAGTCCAACCTCTTGAAGTCTATGTGTCGATTAAAGGTTGGGTTTCAAATATATAAAATAATAAGTGGTGACAACTTGCCCACCTCAACCCATTGTGGGGTTGCACAAATTGCTATCATAAAACTACAATTTACTAATTATTTGTCTTGATAAACTTTTGTTCGTTTTCAATGCTACAGAATTTTGCAACTAATTGTTAAACTTTAAACATTGTGATGTTGGTATCGTCCTCTGAATATTATGTCTATTTAAAGTGGTCTATTAAAAGGAACAGTGAGCTGTTAGCAACTCCTTCTTCAACCTAAATAGACAAAGAGTTTAGTTGTCTGTGAAAACTAGCTTAGTACTTTTTTGTACTAGGATGAAAAGGAGTTCTCATATCTTAAAAGATATATGAATTGAAAAAAGAAGTACCTAGAGGCTAGATGTAACCTGTTAGGTTGCCGATTTTTAGCTCATTGTAATACAATATTCTGACAGGCCATGAGTGTTAATTCATAGTTTAACAGTATCGGTGTCAAATGGGTGGGTTGGACTGGATTTGGGCGGGCCAAAATGAGTTGGGCTAAAAGATGGCTCAAAAGTTCTTGGGATGAAACTGGTTGTGCTAAAATAGGTTGGGTCATGACCCACACAACTTGGCACAATCTTCTTAACTGATTTATTTCTGCTAAAAGTGGAAATAGTTTTCATTCATTATGGTTACACCATTTATACATCCAAAGACAGTAAATCTTCGATTCGGAAAAGTTACTGCACATTCCAAAAACAAACTCAGTACTTGAATTTATATTCAATGGTCATTGCAGTTCTCGTTGTTCCCTGCATTCTAACTGGAATTTGGAGAATGTTCTCTGAAGAAGTTAGGAAACAAGAATTATCTTGATTTGTTACCTTCTCAAAATAAGAAGAATTATCTTGAATTTAGACAATCTTATATAGAGTTGATAGTTGTATGGAGGCTCTTTTTTGTCTACTTGGTTGCTTTCTGATGAGTCAAATTTACGTAGATGTTAGACAATTATATTCAGAGTTGATAGCAACCAAATGAACAAAAAAGAGCCTCCATACAACTATCAACTCTATCTTCTTTCGAGGTGATACCTGTATGAAGGAACTTTTTTTGGCTATCTGGTTGCTATACGCTTCTATAACTAGTTATTGTTGTTTAATTAAGTTTCCTAATGACTAAAAAGCTTGGGAAATAAGAAATTAAACTTGTTATATAACTCTTAGTTATTTGCACCTTCGTTGGACCGGTAATTATTGCTGTAAAAAATTATTAACAATTGACATTATTATTTGTTAGTGTCAAAAATTGACATTATTATTAGTCATTTCATCTGTATCCATTTCAACCATCAGAGACTTACATACAAAGAATCATGGAATTAACCTGGTTTTACATGAGTTATTGAGTCGTTCTTCTATGTCTGTTCATGCAGTTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG</genome_strand>
        <mrna_strand>AAGTAGATACTGTGTTAGGGTTTAGCTTCCTTC--TGTATCGACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACCCTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAG-TC--CGACGTTGATTCGTTCAAGAAGGTTTCTACTGAAGGTTTCTTATACCCTACTGGCCTTCCTTCACTGCCCTTTTTACTCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGAGTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCATAAGGACACATGGTTACTTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338860" ref_strand="+" ref_description="SGN-E338860 [cTOE-21-M1]">
      <seq>gatactgtgttagggtttagctggcttctgtgtatcaactgtgtgtgaaaatgtcgtcgtcgtcgaaaactttaattcggacgggcgtttctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgacactcacttccaggctttttccatctctctcctctcactctcagtctccgattcgtcttgatttaccccagttcgacgacattgattcgttcaagaaggtttccactgaaggtttcttataccctacaggacttccttcactgccctttttcctccctgacgttgatgattcttcatcgagtgggatgcttttgtttcctaagagaacctaccaacccagcaacatgaagcgcaaaaggacacatggttactttgctcgcaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44283" stop="41234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43983" g_stop="43663" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41541" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="418" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E338860" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43983" e_stop="43663"/>
          <exon e_start="41637" e_stop="41541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACGGTAAATTCCCTCTCTATATTTGAGACTATACTATACATTTGCGTAATGATGGTATTTAGCTGGAACGTTGAGGTACATTGTACTTTTATTATTTCATTTTGTGATACGAAATGGGTTGTGAATATACCGGATGCATATAGCTGAGCTCAACTAGGTTGGAAATTGTTGCATAGTTGAATTATTGTTTTACATTCTTTTTTTTCTGAGAAGTTGAGCATTTAGAAGTTCCGTTGCACTGTAGGTTGCTAATTGATTGAATTTCAAATGCAATGACAGTTGTTCCAATTCTAGCCTATTGCTTCTTTTTAGGTTCACACTTAACTGAACAATTTGATCTAATTAGATCACTGGAAAAAGATTTCTTTTTTCTCTAGGAAAAGATGGTATGCCTGACCAATCCATTTAAGGCTGCAGTCTGTACCATGGGTTGGTAAACTGATAGAAGTCACCTCTGCGAGTTTCTTGAGCCACTGCCTGTTCAAGTTCATTGATAACTTACAGTCAGATTATGCTGAAAGTGGATGTGCTGGATTGAAATATAGCATGGTGAAACAGGTTAAGTTAAACCAAAGATGAGCTATAGTCCAACCTCTTGAAGTCTATGTGTCGATTAAAGGTTGGGTTTCAAATATATAAAATAATAAGTGGTGACAACTTGCCCACCTCAACCCATTGTGGGGTTGCACAAATTGCTATCATAAAACTACAATTTACTAATTATTTGTCTTGATAAACTTTTGTTCGTTTTCAATGCTACAGAATTTTGCAACTAATTGTTAAACTTTAAACATTGTGATGTTGGTATCGTCCTCTGAATATTATGTCTATTTAAAGTGGTCTATTAAAAGGAACAGTGAGCTGTTAGCAACTCCTTCTTCAACCTAAATAGACAAAGAGTTTAGTTGTCTGTGAAAACTAGCTTAGTACTTTTTTGTACTAGGATGAAAAGGAGTTCTCATATCTTAAAAGATATATGAATTGAAAAAAGAAGTACCTAGAGGCTAGATGTAACCTGTTAGGTTGCCGATTTTTAGCTCATTGTAATACAATATTCTGACAGGCCATGAGTGTTAATTCATAGTTTAACAGTATCGGTGTCAAATGGGTGGGTTGGACTGGATTTGGGCGGGCCAAAATGAGTTGGGCTAAAAGATGGCTCAAAAGTTCTTGGGATGAAACTGGTTGTGCTAAAATAGGTTGGGTCATGACCCACACAACTTGGCACAATCTTCTTAACTGATTTATTTCTGCTAAAAGTGGAAATAGTTTTCATTCATTATGGTTACACCATTTATACATCCAAAGACAGTAAATCTTCGATTCGGAAAAGTTACTGCACATTCCAAAAACAAACTCAGTACTTGAATTTATATTCAATGGTCATTGCAGTTCTCGTTGTTCCCTGCATTCTAACTGGAATTTGGAGAATGTTCTCTGAAGAAGTTAGGAAACAAGAATTATCTTGATTTGTTACCTTCTCAAAATAAGAAGAATTATCTTGAATTTAGACAATCTTATATAGAGTTGATAGTTGTATGGAGGCTCTTTTTTGTCTACTTGGTTGCTTTCTGATGAGTCAAATTTACGTAGATGTTAGACAATTATATTCAGAGTTGATAGCAACCAAATGAACAAAAAAGAGCCTCCATACAACTATCAACTCTATCTTCTTTCGAGGTGATACCTGTATGAAGGAACTTTTTTTGGCTATCTGGTTGCTATACGCTTCTATAACTAGTTATTGTTGTTTAATTAAGTTTCCTAATGACTAAAAAGCTTGGGAAATAAGAAATTAAACTTGTTATATAACTCTTAGTTATTTGCACCTTCGTTGGACCGGTAATTATTGCTGTAAAAAATTATTAACAATTGACATTATTATTTGTTAGTGTCAAAAATTGACATTATTATTAGTCATTTCATCTGTATCCATTTCAACCATCAGAGACTTACATACAAAGAATCATGGAATTAACCTGGTTTTACATGAGTTATTGAGTCGTTCTTCTATGTCTGTTCATGCAGTTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG</genome_strand>
        <mrna_strand>GATACTGTGTTAGGGTTTAGCTGGCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAAGCGCAAAAGGACACATGGTTACTTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341108" ref_strand="+" ref_description="SGN-E341108 [cTOE-22-O14]">
      <seq>tttagcttccttctgtgtatcaactgtgtgtgaaaatgtcgtcgtcgtcgaaaactttaattcggacgggcgtttctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgacactcacttccaggctttttccatctctctcctctcactctcagtctccgattcgtcttgatttaccccagttcgacgacattgattcgttcaagaaggtttccactgaaggtttcttataccctacaggacttccttcactgccctttttcctccctgacgttgatgattcttcatcgagtgggatgcttttgtttcctaagagaacctaccaacccagcaacatgaggcgcaaaaggacacatggttactttgctcgcaaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44268" stop="41232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43968" g_stop="43663" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41637" g_stop="41541" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E341108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43968" e_stop="43663"/>
          <exon e_start="41637" e_stop="41541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACGGTAAATTCCCTCTCTATATTTGAGACTATACTATACATTTGCGTAATGATGGTATTTAGCTGGAACGTTGAGGTACATTGTACTTTTATTATTTCATTTTGTGATACGAAATGGGTTGTGAATATACCGGATGCATATAGCTGAGCTCAACTAGGTTGGAAATTGTTGCATAGTTGAATTATTGTTTTACATTCTTTTTTTTCTGAGAAGTTGAGCATTTAGAAGTTCCGTTGCACTGTAGGTTGCTAATTGATTGAATTTCAAATGCAATGACAGTTGTTCCAATTCTAGCCTATTGCTTCTTTTTAGGTTCACACTTAACTGAACAATTTGATCTAATTAGATCACTGGAAAAAGATTTCTTTTTTCTCTAGGAAAAGATGGTATGCCTGACCAATCCATTTAAGGCTGCAGTCTGTACCATGGGTTGGTAAACTGATAGAAGTCACCTCTGCGAGTTTCTTGAGCCACTGCCTGTTCAAGTTCATTGATAACTTACAGTCAGATTATGCTGAAAGTGGATGTGCTGGATTGAAATATAGCATGGTGAAACAGGTTAAGTTAAACCAAAGATGAGCTATAGTCCAACCTCTTGAAGTCTATGTGTCGATTAAAGGTTGGGTTTCAAATATATAAAATAATAAGTGGTGACAACTTGCCCACCTCAACCCATTGTGGGGTTGCACAAATTGCTATCATAAAACTACAATTTACTAATTATTTGTCTTGATAAACTTTTGTTCGTTTTCAATGCTACAGAATTTTGCAACTAATTGTTAAACTTTAAACATTGTGATGTTGGTATCGTCCTCTGAATATTATGTCTATTTAAAGTGGTCTATTAAAAGGAACAGTGAGCTGTTAGCAACTCCTTCTTCAACCTAAATAGACAAAGAGTTTAGTTGTCTGTGAAAACTAGCTTAGTACTTTTTTGTACTAGGATGAAAAGGAGTTCTCATATCTTAAAAGATATATGAATTGAAAAAAGAAGTACCTAGAGGCTAGATGTAACCTGTTAGGTTGCCGATTTTTAGCTCATTGTAATACAATATTCTGACAGGCCATGAGTGTTAATTCATAGTTTAACAGTATCGGTGTCAAATGGGTGGGTTGGACTGGATTTGGGCGGGCCAAAATGAGTTGGGCTAAAAGATGGCTCAAAAGTTCTTGGGATGAAACTGGTTGTGCTAAAATAGGTTGGGTCATGACCCACACAACTTGGCACAATCTTCTTAACTGATTTATTTCTGCTAAAAGTGGAAATAGTTTTCATTCATTATGGTTACACCATTTATACATCCAAAGACAGTAAATCTTCGATTCGGAAAAGTTACTGCACATTCCAAAAACAAACTCAGTACTTGAATTTATATTCAATGGTCATTGCAGTTCTCGTTGTTCCCTGCATTCTAACTGGAATTTGGAGAATGTTCTCTGAAGAAGTTAGGAAACAAGAATTATCTTGATTTGTTACCTTCTCAAAATAAGAAGAATTATCTTGAATTTAGACAATCTTATATAGAGTTGATAGTTGTATGGAGGCTCTTTTTTGTCTACTTGGTTGCTTTCTGATGAGTCAAATTTACGTAGATGTTAGACAATTATATTCAGAGTTGATAGCAACCAAATGAACAAAAAAGAGCCTCCATACAACTATCAACTCTATCTTCTTTCGAGGTGATACCTGTATGAAGGAACTTTTTTTGGCTATCTGGTTGCTATACGCTTCTATAACTAGTTATTGTTGTTTAATTAAGTTTCCTAATGACTAAAAAGCTTGGGAAATAAGAAATTAAACTTGTTATATAACTCTTAGTTATTTGCACCTTCGTTGGACCGGTAATTATTGCTGTAAAAAATTATTAACAATTGACATTATTATTTGTTAGTGTCAAAAATTGACATTATTATTAGTCATTTCATCTGTATCCATTTCAACCATCAGAGACTTACATACAAAGAATCATGGAATTAACCTGGTTTTACATGAGTTATTGAGTCGTTCTTCTATGTCTGTTCATGCAGTTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG</genome_strand>
        <mrna_strand>TTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305276" ref_strand="+" ref_description="SGN-E305276 [cLEX-15-M8]">
      <seq>tgttttcgaaggaaaaatggtggaaactggaagaacttggagaagtagatactgtgttagggtttagcttccttctgtgtatcaactgtgtgtgaaaatgtcgtcgtcgtcgaaaactttaattcggacgggcgtttctctgattagccgtttgatgacccaaaacttgagatgttcagcacaaacgccacaaattgcgaatccgacactcacttccaggctttttccatctctcttctctcactctcagtctccgattcgtcttgatttacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44330" stop="43456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44030" g_stop="43756" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E305276" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44030" e_stop="43756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCGAAGGAAAAATGGTGGAAACTGGAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCC</genome_strand>
        <mrna_strand>TGTTTTCGAAGGAAAAATGGTGGAAACTGGAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTTCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320396" ref_strand="+" ref_description="SGN-E320396 [cTOB-22-K6]">
      <seq>taaatctcattcggcggcaattttcaaattttagcacacaaagctagggtttaacgcaatcacaaataactcagtatttgattctcgtgctgaaatccgtctaggttttgttgcgattcattatctctttcgatcagttggaaaggatatggctgatagggaagcccctggttcttcagcaagatcactttttattggaggcatttctatggatataaccgaagaatcattgagggctcatttcagtcagtttggagagatagctgatttagtactaaagcgtgataaaggttttggatttgttacatatgctaacccggaaactgtagatgaagttttaaacacataccataacatagctagtaaagaggtggatgtgaagataccggtaacttatagacagagaattcatgttggtgaacttccgttgtctttaaccgaagtttcaggtgagttgaaggaatatttttcgtcttatggcaatgttgtgggaaatcagatcgttttggataaaacnactgggcgctccagaggctttgcctttgtgagttttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50745" stop="49243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50445" g_stop="50263" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50262" i_stop="50168" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50167" g_stop="50127" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="224" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50126" i_stop="50041" i_length="86">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50040" g_stop="49895" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="370" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49894" i_stop="49803" i_length="92">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49802" g_stop="49730" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="443" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49729" i_stop="49658" i_length="72">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49657" g_stop="49543" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="558" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E320396" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50445" e_stop="50263"/>
          <exon e_start="50167" e_stop="50127"/>
          <exon e_start="50040" e_stop="49895"/>
          <exon e_start="49802" e_stop="49730"/>
          <exon e_start="49657" e_stop="49543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTCATTCGGCGGCAATTTTCAAATTTTAGCACACAAAGCTAGGGTTTAACGCAATCACAAATAACTCAGTATTTGATTCTCGTGCTGAAATCCGTCTAGGTTTTGTTGCGATTCATTATCTCTTTCGATCAGTTGGAAAGGATATGGCTGATAGGGAAGCCCCTGGTTCTTCAGCAAGGTAAGTTCATAGCTTGTTGCAAATCACATGTTCTTGAATATTTCCTTGTTTATCGTTTGAATTTTACCAAATCGGTTGTATTTTCTTGATGATAGATCACTTTTTATTGGAGGCATTTCTATGGATATAACCGAAGGTATTGATGCTATCTTGTGATATTACGTCCCAAATTGGATCCTCTGTTTTTTAAGTCTTCAATTTATGAATTTTTTAACTTTCCAGAATCATTGAGGGCTCATTTCAGTCAGTTTGGAGAGATAGCTGATTTAGTACTAAAGCGTGATAAAGGTTTTGGATTTGTTACATATGCTAACCCGGAAACTGTAGATGAAGTTTTAAACACATACCATAACATAGCTAGTAAAGAGGTAGAATTTTCTCCTGAAAGCACCACATTCTCTCATTTTTCCTATTACTCTTTGCCTTGTGTTAATGTTTAAAGAGTATATTTGTGTATAAGGTGGATGTGAAGATACCGGTAACTTATAGACAGAGAATTCATGTTGGTGAACTTCCGTTGTCTTTAACCGAAGGTAAAGAGTATACATGATATCACTTCTTATTTCTGCCAGTTTGCTAGCTCTTTAATTTAACCTAGTGATTAGTTTCAGGTGAGTTGAAGGAATATTTTTCGTCTTATGGCAATGTTGTGGGAAATCAGATCGTTTTGGATAAAACAACTGGCCGCTCCAGAGGCTTTGCCTTTGTGAGTTTTGATAC</genome_strand>
        <mrna_strand>TAAATCTCATTCGGCGGCAATTTTCAAATTTTAGCACACAAAGCTAGGGTTTAACGCAATCACAAATAACTCAGTATTTGATTCTCGTGCTGAAATCCGTCTAGGTTTTGTTGCGATTCATTATCTCTTTCGATCAGTTGGAAAGGATATGGCTGATAGGGAAGCCCCTGGTTCTTCAGCAAG...............................................................................................ATCACTTTTTATTGGAGGCATTTCTATGGATATAACCGAAG......................................................................................AATCATTGAGGGCTCATTTCAGTCAGTTTGGAGAGATAGCTGATTTAGTACTAAAGCGTGATAAAGGTTTTGGATTTGTTACATATGCTAACCCGGAAACTGTAGATGAAGTTTTAAACACATACCATAACATAGCTAGTAAAGAG............................................................................................GTGGATGTGAAGATACCGGTAACTTATAGACAGAGAATTCATGTTGGTGAACTTCCGTTGTCTTTAACCGAAG........................................................................TTTCAGGTGAGTTGAAGGAATATTTTTCGTCTTATGGCAATGTTGTGGGAAATCAGATCGTTTTGGATAAAACNACTGGGCGCTCCAGAGGCTTTGCCTTTGTGAGTTTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734077" ref_strand="-" ref_description="SGN-E734077 [LB11CH06]">
      <seq>tttttttttttttttttgaaaagaaggtgacattgtttttccctgcttctacaactattttccttgccgttcagattcctctaccctaaaaatgnaaaagggtcctcttctttatctttcagctctattcactggtgatttctatctccattttacctttcctctccttcaatttactcttccagagtttttccttatttcgtatcaataacaacaggagatggaactaaaattcaaaaaaagaaaaggtatcatttttggaagtctaaactttgttgttctagaaggttctgaggatacttatgtgcagattcaggggcagcatcggagtccagtgacgagaggaattggtgtggcagcagccgcagctactggtggcactgccaccacagctgtcccaggtggtgttgcaaaccagttcaagcctacgtctctgtacataggagacttggacatcaacgtgacacatacacaactgcaccagctgcttaaccaagcgggtcaggttatatcagttaggatttgtagggactttagcactcggagatcccttggctatggcttcatcaactacagcaaccctcaggatgctgcaagggcaatggagatgttagatttcactcctgttaatggaaagtccattagggtgaagcgctctcatagggatcctaattctcctaagaatagaagagctaatctatttatcaggaatttggacaagtcaattgaaatcgaagctttacatgacaccttttcaaactttggctacatttgttcttgcaagatagttactgattctaatggccagtcgaagggttatggtttttacaatttgacaatgatgaatccgctcaaagttgccatagataagtcaaatggtgtgctcatcaatggtaggcaagtgtatgttgcacatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3407" stop="71673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69990" g_stop="70003" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70004" i_stop="70466" i_length="463">
            <donor d_prob="0.157" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70467" g_stop="71373" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="921" r_length="907" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E734077" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69990" e_stop="70003"/>
          <exon e_start="70467" e_stop="71373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTTCTTCTTTGCTTGGATGGTGCCTTTTGTGTTATTCACTTTTATTTAGATCTTTTTCCTGGCAAATTCCGCTTTTTGTTCTATGCATCATAAGTTTCTGTTGATTGAATTAGAGGAGTAAATGTGATTGTTATATTTTCTGCTTCTATTGGCAGCTCAATAATTCGGGACAAAATAATCCCTAGCACGCAGTATTGTGGTTTACTGGTGAAGCTGAAGAGGACGACTCTATATATATGCAATTTGATATGGAAGCATATGAGTATGCATGTAGGTTTATGGTGGATGGTATTGGATCGTACGAGGATACAGATATGTATATGGAATGTGATATTCCTAGACATGTGAAGAAGCTTGACAATATTGAAGATGATGATGATAATGAAGACGATGACGAGGAAGAAGATGACGATGACGATGACGATGATGAATATGCCTAGGATTATGATGGGAAAAGAGAAGAGGAGGAGAAGCCTGAAAAGAAGGTGACATTTGTTTTCCCTGCTTCTACAACTATTTTCCTTGCCGTTCAGATTCCTCTACCCTAAAAATTGAAAAGGGTCCTCTTCTTTATCTTTCAGCTCTATTCACTGGTGATTTCTATCTCCATTTTACCTTTCCTCTCCTTCAATTTACTCTTCCAGAGTTTTTCCTTATTTCGTATCAATAACAACAGGAGATGGAACTAAAATTCAAAAAAAGAAAAGGTATCATTTTTGGAAGTCTAAACTTTGTTGTTCTAGAAGGTTCTGAGGATACTTATGTGCAGATTCAGGGGCAGCATCGGAGTCCAGTGACGAGAGGAATTGGTGTGGCAGCAGCCGCAGCTACTGGTGGCACTGCCACCACAGCTGTCCCAGGTGGTGTTGCAAACCAGTTCAAGCCTACGTCTCTGTACATAGGAGACTTGGACATCAACGTGACACATACACAACTGCACCAGCTGCTTAACCAAGCGGGTCAGGTTATATCAGTTAGGATTTGTAGGGACTTTAGCACTCGGAGATCCCTTGGCTATGGCTTCATCAACTACAGCAACCCTCAGGATGCTGCAAGGGCAATGGAGATGTTAGATTTCACTCCTGTTAATGGAAAGTCCATTAGGGTGAAGCGCTCTCATAGGGATCCTAATTCTCCTAAGAATAGAAGAGCTAATCTATTTATCAGGAATTTGGACAAGTCAATTGAAATCGAAGCTTTACATGACACCTTTTCAAACTTTGGCTACATTTGTTCTTGCAAGATAGTTACTGATTCTAATGGCCAGTCGAAGGGTTATGGTTTTTACAATTTGACAATGATGAATCCGCTCAAAGTTGCCATAGATAAGTCAAATGGTGTGCTCATCAATGGTAGGCAAGTGTATGTTGCACATGCTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAGAAGGTGACATTGTTTTTCCCTGCTTCTACAACTATTTTCCTTGCCGTTCAGATTCCTCTACCCTAAAAATGNAAAAGGGTCCTCTTCTTTATCTTTCAGCTCTATTCACTGGTGATTTCTATCTCCATTTTACCTTTCCTCTCCTTCAATTTACTCTTCCAGAGTTTTTCCTTATTTCGTATCAATAACAACAGGAGATGGAACTAAAATTCAAAAAAAGAAAAGGTATCATTTTTGGAAGTCTAAACTTTGTTGTTCTAGAAGGTTCTGAGGATACTTATGTGCAGATTCAGGGGCAGCATCGGAGTCCAGTGACGAGAGGAATTGGTGTGGCAGCAGCCGCAGCTACTGGTGGCACTGCCACCACAGCTGTCCCAGGTGGTGTTGCAAACCAGTTCAAGCCTACGTCTCTGTACATAGGAGACTTGGACATCAACGTGACACATACACAACTGCACCAGCTGCTTAACCAAGCGGGTCAGGTTATATCAGTTAGGATTTGTAGGGACTTTAGCACTCGGAGATCCCTTGGCTATGGCTTCATCAACTACAGCAACCCTCAGGATGCTGCAAGGGCAATGGAGATGTTAGATTTCACTCCTGTTAATGGAAAGTCCATTAGGGTGAAGCGCTCTCATAGGGATCCTAATTCTCCTAAGAATAGAAGAGCTAATCTATTTATCAGGAATTTGGACAAGTCAATTGAAATCGAAGCTTTACATGACACCTTTTCAAACTTTGGCTACATTTGTTCTTGCAAGATAGTTACTGATTCTAATGGCCAGTCGAAGGGTTATGGTTTTTACAATTTGACAATGATGAATCCGCTCAAAGTTGCCATAGATAAGTCAAATGGTGTGCTCATCAATGGTAGGCAAGTGTATGTTGCACATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555073" ref_strand="+" ref_description="SGN-E555073 [cTSC-6-F16]">
      <seq>attcaggggcagcatcggagtccagtgacgagaggaattggtgtggcagcagccgcagctactggtggcactgccaccacagctgtcccaggtggtgttgcaaaccagttcaagcctacgtctctgtacataggagacttggacatcaacgtgacacatacacaactgcaccagctgcttaaccaagcgggtcaggttatatcagttaggatttgtagggactttagcactcggagatcccttggctatggcttcatcaactacagcaaccctcaggatgctgcaagggcaatggagatgttagatttcactcctgttaatggaaagtccattagggtgaagcgctctcatagggatcctaattctcctaagaatagaagagctaatctatttatcaggaatttggacaagtcaattgaaatcgaagctttacatgacaccttttcaaactttggctacatttgttcttgcaagatagttactgattctaatggccagtcgaagggttatggtttttacaatttgacaatgatgaatccgctcaaagttgccatagataagtcaaatggtgtgctcatcaatggtaggcaagtgtatgttgcacatgctctttgcaaagagaagagtggcataggcacaagctggggaaggacaatggagtggtgaacgtcctccagtgcgcaggcaatagtaatttgtggtggttgcccactaggctaaaagctatggggaaggaccaatcttgaaacccttggttgataaatttgtcttcgcctcattttggtatgttcatctttcctttttgtctattccctttgttggcagtgattttgtgatctctcagggttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70463" stop="71915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70763" g_stop="71615" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E555073" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70763" e_stop="71615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGGGCAGCATCGGAGTCCAGTGACGAGAGGAATTGGTGTGGCAGCAGCCGCAGCTACTGGTGGCACTGCCACCACAGCTGTCCCAGGTGGTGTTGCAAACCAGTTCAAGCCTACGTCTCTGTACATAGGAGACTTGGACATCAACGTGACACATACACAACTGCACCAGCTGCTTAACCAAGCGGGTCAGGTTATATCAGTTAGGATTTGTAGGGACTTTAGCACTCGGAGATCCCTTGGCTATGGCTTCATCAACTACAGCAACCCTCAGGATGCTGCAAGGGCAATGGAGATGTTAGATTTCACTCCTGTTAATGGAAAGTCCATTAGGGTGAAGCGCTCTCATAGGGATCCTAATTCTCCTAAGAATAGAAGAGCTAATCTATTTATCAGGAATTTGGACAAGTCAATTGAAATCGAAGCTTTACATGACACCTTTTCAAACTTTGGCTACATTTGTTCTTGCAAGATAGTTACTGATTCTAATGGCCAGTCGAAGGGTTATGGTTTTTACAATTTGACAATGATGAATCCGCTCAAAGTTGCCATAGATAAGTCAAATGGTGTGCTCATCAATGGTAGGCAAGTGTATGTTGCACATGCTCTTTGCAAAGAGAAGAGTGGCATAGGCACAAGCTGGGGAAGGACAATGGAGTGGTGAACGTCCTCCAGTGCGCAGGCAATAGTAATTTGTGGTGGTTGCCCACTAGGCTAAAAGCTATGGGGAAGGACCAATCTTGAAACCCTTGGTTGATAAATTTGTCTTCGCCTCATTTTGGTATGTTCATCTTTCCTTTTTGTCTATTCCTTTTGTTGGCAGTGATTTTGTGATCTCTCAGGGTTATCTT</genome_strand>
        <mrna_strand>ATTCAGGGGCAGCATCGGAGTCCAGTGACGAGAGGAATTGGTGTGGCAGCAGCCGCAGCTACTGGTGGCACTGCCACCACAGCTGTCCCAGGTGGTGTTGCAAACCAGTTCAAGCCTACGTCTCTGTACATAGGAGACTTGGACATCAACGTGACACATACACAACTGCACCAGCTGCTTAACCAAGCGGGTCAGGTTATATCAGTTAGGATTTGTAGGGACTTTAGCACTCGGAGATCCCTTGGCTATGGCTTCATCAACTACAGCAACCCTCAGGATGCTGCAAGGGCAATGGAGATGTTAGATTTCACTCCTGTTAATGGAAAGTCCATTAGGGTGAAGCGCTCTCATAGGGATCCTAATTCTCCTAAGAATAGAAGAGCTAATCTATTTATCAGGAATTTGGACAAGTCAATTGAAATCGAAGCTTTACATGACACCTTTTCAAACTTTGGCTACATTTGTTCTTGCAAGATAGTTACTGATTCTAATGGCCAGTCGAAGGGTTATGGTTTTTACAATTTGACAATGATGAATCCGCTCAAAGTTGCCATAGATAAGTCAAATGGTGTGCTCATCAATGGTAGGCAAGTGTATGTTGCACATGCTCTTTGCAAAGAGAAGAGTGGCATAGGCACAAGCTGGGGAAGGACAATGGAGTGGTGAACGTCCTCCAGTGCGCAGGCAATAGTAATTTGTGGTGGTTGCCCACTAGGCTAAAAGCTATGGGGAAGGACCAATCTTGAAACCCTTGGTTGATAAATTTGTCTTCGCCTCATTTTGGTATGTTCATCTTTCCTTTTTGTCTATTCCCTTTGTTGGCAGTGATTTTGTGATCTCTCAGGGTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348103" ref_strand="+" ref_description="SGN-E348103 [cTOF-31-H24]">
      <seq>tcaacaaatcaagaaaaagagaaaccaaccaggcaatccagatccagaagcagaagtgatagctttatcacccaagacactagtggcaaccaacagattcttttgtgaaatttgtaacaaagggtttcaaagagatcaaaatctacaactccatagaagaggacacaatttgccatggaagttaaagaagagagaaaataaagaagtagtgaggaagaaagtgtatatttgtccagagtcgagctgtgtgcaccatgatccgtctagggcattaggagatcttactggaattaagaagcattttagcagaaaacatggtgagaagaagtggaaatgtgagaaatgttcaaagcgttatgctgttcaatctgattgcaaagctcacttcaagacttgtggtactagagaaacaaatgtgaatgtggtactattttctcaagacgagatagtttcatcacacacagagcattctgcgagactttagctatggagaagcgcagatcagtaataaatgaacgaaatccaacaattttctcacctcanatgaatctncagtttcaacagcctcactactttaatagccacgaattcacaaccatttcagcttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74272" stop="76019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74574" g_stop="74973" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="440" r_length="399" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74974" i_stop="75455" i_length="482">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75456" g_stop="75597" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="582" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75598" i_stop="75689" i_length="92">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75690" g_stop="75719" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="612" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E348103" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74574" e_stop="74973"/>
          <exon e_start="75456" e_stop="75597"/>
          <exon e_start="75690" e_stop="75719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGAAGCAGAAGTGATAGCTTTATCACCCAAGACACTAGTGGCAACCAACAGATTCTTTTGTGAAATTTGTAACAAAGGGTTTCAAAGAGATCAAAATCTACAACTCCATAGAAGAGGACACAATTTGCCATGGAAGTTAAAGAAGAGAGAAAATAAAGAAGTAGTGAGGAAGAAAGTGTATATTTGTCCAGAGTCGAGCTGTGTGCACCATGATCCGTCTAGGGCATTAGGAGATCTTACTGGAATTAAGAAGCATTTTAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAGAAATGTTCAAAGCGTTATGCTGTTCAATCTGATTGCAAAGCTCACTTCAAGACTTGTGGTACTAGAGAATACAAATGTGAATGTGGTACTATTTTCTCAAGGTATGTAAACCATTGCGAATTTAAAATTATAAGTTTATACAATATTTAGGATAGAATTACTAAAACATTATTTTGTCTATAAGAGTATAAACACGAAAACAAGTTAATCAGACAAACAAACATTTCTAGACTCTAATCATATAATAAAAAGTGGTAGGTACCATACTCTCTTTTTGTTCTACTTTTTTGAATTTTGAGTTCCATCTTTTATGGTGTGTAAAGGCGTGTAAAGTGATAATAATGAGATTACTTTGGTGTGCAATCAATCATTAAACAATAATTAATAGGATATCAGTATCACATTTCCACCCATTCCCATTAATAATAAGGGGAGACCAACTATTATAATGACCATTTATCTTTTCAACATATTATATATCTATATCTATACACAGTAACGAGTATTTGTTCGTTTCAATTTATATGACATGCTTTCTTTTTTAGTTCGATAATGATATTGATTTTTTTTTTTCGTTCTTCAGACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAG-AGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTACTTTAATAGCCATGAACAGATTCAAGCTGCTACGTTTCCCATGAAAAAAGAGCAGCAAAGTAGCGATTTCAGACATATTGAGATTCCTCCATGGCTAATTACCACGAATTCACAACCATTTCAGCTTGGAGC</genome_strand>
        <mrna_strand>ATCCAGAAGCAGAAGTGATAGCTTTATCACCCAAGACACTAGTGGCAACCAACAGATTCTTTTGTGAAATTTGTAACAAAGGGTTTCAAAGAGATCAAAATCTACAACTCCATAGAAGAGGACACAATTTGCCATGGAAGTTAAAGAAGAGAGAAAATAAAGAAGTAGTGAGGAAGAAAGTGTATATTTGTCCAGAGTCGAGCTGTGTGCACCATGATCCGTCTAGGGCATTAGGAGATCTTACTGGAATTAAGAAGCATTTTAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAGAAATGTTCAAAGCGTTATGCTGTTCAATCTGATTGCAAAGCTCACTTCAAGACTTGTGGTACTAGAGAA-ACAAATGTGAATGTGGTACTATTTTCTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAAGCGC-AGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCANATGAATCTNCAGTTTCAACAGCCTCACTACTTTAATAGC............................................................................................CACGAATTCACAACCATTTCAGCTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270876" ref_strand="+" ref_description="SGN-E270876 [cLEM-6-D9]">
      <seq>ggcaatccagatccagaagcagaagtgatagctttatcacccaagacactagtggcaaccaacagattcttttgtgaaatttgtaacaaagggtttcaaagagatcaaaatctacaactccatagaagaggacacaatttgccatggaagttaaagaagagagaaaataaagaagtagtgaggaagaaagtgtatatttgtccagagtcgagctgtgtgcaccatgatccgtctagggcattaggagatcttactggaattaagaagcattttagcagaaaacatggtgagaagaagtggaaatgtgagaaatgttcaaagcgttatgctgttcaatctgattgcaaagctcacttcaagacttgtggtactagagaatacaaatgtgaatgtggtactattttctcaagacgagatagtttcatcacacacagagcattctgcgagactttagctatggagagcgcaagatcagtaataaatgaacgaaatccaacaattttctcacctcaaatgaatctccagtttcaacagcctcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74272" stop="75888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74574" g_stop="74973" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="410" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74974" i_stop="75455" i_length="482">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75456" g_stop="75588" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="543" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E270876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74574" e_stop="74973"/>
          <exon e_start="75456" e_stop="75588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGAAGCAGAAGTGATAGCTTTATCACCCAAGACACTAGTGGCAACCAACAGATTCTTTTGTGAAATTTGTAACAAAGGGTTTCAAAGAGATCAAAATCTACAACTCCATAGAAGAGGACACAATTTGCCATGGAAGTTAAAGAAGAGAGAAAATAAAGAAGTAGTGAGGAAGAAAGTGTATATTTGTCCAGAGTCGAGCTGTGTGCACCATGATCCGTCTAGGGCATTAGGAGATCTTACTGGAATTAAGAAGCATTTTAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAGAAATGTTCAAAGCGTTATGCTGTTCAATCTGATTGCAAAGCTCACTTCAAGACTTGTGGTACTAGAGAATACAAATGTGAATGTGGTACTATTTTCTCAAGGTATGTAAACCATTGCGAATTTAAAATTATAAGTTTATACAATATTTAGGATAGAATTACTAAAACATTATTTTGTCTATAAGAGTATAAACACGAAAACAAGTTAATCAGACAAACAAACATTTCTAGACTCTAATCATATAATAAAAAGTGGTAGGTACCATACTCTCTTTTTGTTCTACTTTTTTGAATTTTGAGTTCCATCTTTTATGGTGTGTAAAGGCGTGTAAAGTGATAATAATGAGATTACTTTGGTGTGCAATCAATCATTAAACAATAATTAATAGGATATCAGTATCACATTTCCACCCATTCCCATTAATAATAAGGGGAGACCAACTATTATAATGACCATTTATCTTTTCAACATATTATATATCTATATCTATACACAGTAACGAGTATTTGTTCGTTTCAATTTATATGACATGCTTTCTTTTTTAGTTCGATAATGATATTGATTTTTTTTTTTCGTTCTTCAGACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTAC</genome_strand>
        <mrna_strand>ATCCAGAAGCAGAAGTGATAGCTTTATCACCCAAGACACTAGTGGCAACCAACAGATTCTTTTGTGAAATTTGTAACAAAGGGTTTCAAAGAGATCAAAATCTACAACTCCATAGAAGAGGACACAATTTGCCATGGAAGTTAAAGAAGAGAGAAAATAAAGAAGTAGTGAGGAAGAAAGTGTATATTTGTCCAGAGTCGAGCTGTGTGCACCATGATCCGTCTAGGGCATTAGGAGATCTTACTGGAATTAAGAAGCATTTTAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAGAAATGTTCAAAGCGTTATGCTGTTCAATCTGATTGCAAAGCTCACTTCAAGACTTGTGGTACTAGAGAATACAAATGTGAATGTGGTACTATTTTCTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209251" ref_strand="+" ref_description="SGN-E209251 [cLEC-53-C14]">
      <seq>ttttctcaagacgagatagtttcatcacacacagagcattctgcgagactttagctatggagagcgcaagatcagtaataaatgaacgaaatccaacaattttctcacctcaaatgaatctccagtttcaacagcctcactactttaatagccatgaacagattcaagctgctacgtttcccatgaaaaaagagcagcaaagtagcgatttcagacatattgagattcctccatggctaattaccacgaattcacaaccatttcagcttggagctattaatcctagtccttcagtaccgctcagtaattttagctcatcgtcaatttttccagctactactaggttagatcaacaatacagtcaaagcagccacaaagatttaaatcttcatcatcagaacccaaaccctaatctcagaggacctacattaggttacgattcaatgggagaatcaggtgtggtctctccagtacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75148" stop="76327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75446" g_stop="75865" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75866" i_stop="75969" i_length="104">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75970" g_stop="76027" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="478" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E209251" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75446" e_stop="75865"/>
          <exon e_start="75970" e_stop="76027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCTTCAGACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTACTTTAATAGCCATGAACAGATTCAAGCTGCTACGTTTCCCATGAAAAAAGAGCAGCAAAGTAGCGATTTCAGACATATTGAGATTCCTCCATGGCTAATTACCACGAATTCACAACCATTTCAGCTTGGAGCTATTAATCCTAGTCCTTCAGTACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAGGTAATGAAGGGTTTGATGAACTCGTCCATTTTGAATATAAAGTTGATAGATAATTTGAAACTTTTTCTCATTTGTTTAATTTAATTTGTATTGTACATGAGCAGGACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACAT</genome_strand>
        <mrna_strand>TTTTCTCAAGACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTACTTTAATAGCCATGAACAGATTCAAGCTGCTACGTTTCCCATGAAAAAAGAGCAGCAAAGTAGCGATTTCAGACATATTGAGATTCCTCCATGGCTAATTACCACGAATTCACAACCATTTCAGCTTGGAGCTATTAATCCTAGTCCTTCAGTACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAG........................................................................................................GACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236513" ref_strand="+" ref_description="SGN-E236513 [cLED-13-E9]">
      <seq>ctgctacgtttcccatgaaaaaagagcagcaaagtagcgatttcagacatattgagattcctccatggctaattaccacgaattcacaaccatttcagcttggagctattaatcctagtccttcagtaccgctcagtaattttagctcatcgtcaatttttccagctactactaggttagatcaacaatacagtcaaagcagccacaaagatttaaatcttcatcatcagaacccaaaccctaatctcagaggacctacattaggttacgattcaatgggagaatcaggtgtggtctctccagtacacatttctgcaacttgctttgctgcagaaagcagcccagtttggtgctacaattagtaacaaagcaagtgctgtcactgctactgctgcttacacaggcacagcaaaaataccccacaatactcacgtgtctgttactagtactgattctgctaccaaacaaactcagcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75314" stop="76495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75614" g_stop="75865" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75866" i_stop="75969" i_length="104">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75970" g_stop="76195" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="479" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E236513" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75614" e_stop="75865"/>
          <exon e_start="75970" e_stop="76195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACGTTTCCCATGAAAAAAGAGCAGCAAAGTAGCGATTTCAGACATATTGAGATTCCTCCATGGCTAATTACCACGAATTCACAACCATTTCAGCTTGGAGCTATTAATCCTAGTCCTTCAGTACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAGGTAATGAAGGGTTTGATGAACTCGTCCATTTTGAATATAAAGTTGATAGATAATTTGAAACTTTTTCTCATTTGTTTAATTTAATTTGTATTGTACATGAGCAGGACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAAC-TGCATTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAA</genome_strand>
        <mrna_strand>CTGCTACGTTTCCCATGAAAAAAGAGCAGCAAAGTAGCGATTTCAGACATATTGAGATTCCTCCATGGCTAATTACCACGAATTCACAACCATTTCAGCTTGGAGCTATTAATCCTAGTCCTTCAGTACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAG........................................................................................................GACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAACTTGCTTTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378059" ref_strand="+" ref_description="SGN-E378059 [TUS-21-L12]">
      <seq>accgctcagtaattttagctcatcgtcaatttttccagctactactaggttagatcaacaatacagtcaaagcagccacaaagatttaaatcttcatcatcagaacccaaaccctaatctcagaggacctacattaggttacgattcaatgggagaatcaggtgtggtctctccagtacacatttctgcaactgcattgctgcagaaagcagcccagtttggtgctacaattagtaacaaagcaagtgctgtcactgctactgctgcttacacaggcacagcaaaaataccccacaatactcacgtgtctgttactagtactgattctgctaccaaacaaactcagcagaaattgtcctcacgtgaagacctgaccactattactgggcctgcaaataatataagtggcatcatgacatctttttctaatggctttgatgggtcaacaatgtttgaagatgcgatattattcggtggattcaacaatttgaattcaaaaaaggagaacgaggacgaagatcaacaactctacttcaatggaagtatgaatgaggaggatcatatattaaccaaagatttcttgggtttaaaacctctctctcacactgatgacattttcaacattgctgctcttgttaatactgaatttaaaaatcataaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75441" stop="76809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75741" g_stop="75865" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75866" i_stop="75969" i_length="104">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75970" g_stop="76509" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="665" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E378059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75741" e_stop="75865"/>
          <exon e_start="75970" e_stop="76509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAGGTAATGAAGGGTTTGATGAACTCGTCCATTTTGAATATAAAGTTGATAGATAATTTGAAACTTTTTCTCATTTGTTTAATTTAATTTGTATTGTACATGAGCAGGACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAACTGCATTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTT</genome_strand>
        <mrna_strand>ACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAG........................................................................................................GACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAACTGCATTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235515" ref_strand="+" ref_description="SGN-E235515 [cLED-11-D15]">
      <seq>accgctcagtaattttagctcatcgtcaatttttccagctactactaggttagatcaacaatacagtcaaagcagccacaaagatttaaatcttcatcatcagaacccaaaccctaatctcagaggacctacattaggttacgattcaatgggagaatcaggtgtggtctctccagtacacatttctgcaactgcattgctgcagaaagcagcccagtttggtgctacaattagtaacaaagcaagtgctgtcactgctactgctgcttacacaggcacagcaaaaataccccacaatactcacgtgtctgttactagtactgattctgctaccaaacaaactcagcagaaattgtcctcacgtgaagacctgaccactattactgggcctgcaaataatataagtggcatcatgacatctttttctaatggctttgatgggtcaacaatgtttgaagatgcgatattattcggtggattcaacaatttgaattcaaaaaaggagaacgaggacgaagatcaacaactctacttcaatggaagtatgaatgaggaggatcatatattaaccaaagatttcttgggtttaaaacctctctctcacactgatgacattttcaacattgctgctcttgttaatactgaatttaaaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75441" stop="76802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75741" g_stop="75865" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75866" i_stop="75969" i_length="104">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75970" g_stop="76502" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="658" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E235515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75741" e_stop="75865"/>
          <exon e_start="75970" e_stop="76502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAGGTAATGAAGGGTTTGATGAACTCGTCCATTTTGAATATAAAGTTGATAGATAATTTGAAACTTTTTCTCATTTGTTTAATTTAATTTGTATTGTACATGAGCAGGACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAACTGCATTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCAT</genome_strand>
        <mrna_strand>ACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAG........................................................................................................GACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAACTGCATTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577690" ref_strand="+" ref_description="SGN-E577690 [LE15BH04]">
      <seq>cacaatactcacgtgtctgttactagtactgattctgctaccaaacaaactcagcagaaattgtcctcacgtgaagacctgaccactattactgggcctgcaaataatataagtggcatcatgacatctttttctaatggctttgatgggtcaacaatgtttgaagatgcgatattattcggtggattcaacaatttgaattcaaaaaaggagaacgaggacgaagatcaacaactctacttcaatggaagtatgaatgaggaggatcatatattaaccaaagatttcttgggtttaaaacctctctctcacactgatgacattttcaacattgctgctcttgttaatactgaatttaaaaatcataaaacttggcaaagttaaaattacaatcatctcttttagttgtacacctctagaaactgatatatgtattgtacgtgtagaactcggtgaaagttcagataatcaatgctctcctcaccatatagaaatcaatacattaatattatatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75837" stop="76955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76137" g_stop="76654" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E577690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76137" e_stop="76654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTTGGCAAAGTTAAAATTACAATCATCTCTTTTAGTTGTACACCTCTAGAAACTGATATATGTATTGTACGTGTAGAACTCGGTGAAAGTTCAGATAATCAATGCTCTCCTCACCATATAGAAATCAATACATTAATATTATATTTTT</genome_strand>
        <mrna_strand>CACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTTGGCAAAGTTAAAATTACAATCATCTCTTTTAGTTGTACACCTCTAGAAACTGATATATGTATTGTACGTGTAGAACTCGGTGAAAGTTCAGATAATCAATGCTCTCCTCACCATATAGAAATCAATACATTAATATTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378058" ref_strand="+" ref_description="SGN-E378058 [TUS-21-L12](-)">
      <seq>cacgtgtctgttactagtactgattctgctaccaaacaaactcagcagaaattgtcctcacgtgaagacctgaccactattactgggcctgcaaataatataagtggcatcatgacatctttttctaatggctttgatgggtcaacaatgtttgaagatgcgatattattcggtggattcaacaatttgaattcaaaaaaggagaacgaggacgaagatcaacaactctacttcaatggaagtatgaatgaggaggatcatatattaaccaaagatttcttgggtttaaaacctctctctcacactgatgacattttcaacattgctgctcttgttaatactgaatttaaaaatcataaaacttggcaaagttaaaattacaatcatctcttttagttgtacacctctagaaactgatatatgtattgtacgtgtagaactcggtgaaagttcagataatcaatgctctcctcaccatatagaaatcaatacattaatattatatttttatttagttttattattatttatgtgtgttataacacgttttttaagttttatagatggaatagctagttggtgagttcattgtcatctatggatgttcaagttgcgaatattttgaaatatattattttttatgaaattgatatagttaaggaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75846" stop="77110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76146" g_stop="76807" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="676"/>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E378058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76146" e_stop="76807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTTGGCAAAGTTAAAATTACAATCATCTCTTTTAGTTGTACACCTCTAGAAACTGATATATGTATTGTACGTGTAGAACTCGGTGAAAGTTCAGATAATCAATGCTCTCCTCACCATATAGAAATCAATACATTAATATTATATTTTTATTTAGTTTTATTATTATTTATGTGTGTTATAACACGTTTTTTAAGTTTTATAGATGGAATAGCTAGTTGGTGAGTTCATTGTCATCTATGGATGTTCAAGTTGCGAATATTTTGAAATATATTATTTTTTATGAAATTGATATAGTTAAGGA</genome_strand>
        <mrna_strand>CACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTTGGCAAAGTTAAAATTACAATCATCTCTTTTAGTTGTACACCTCTAGAAACTGATATATGTATTGTACGTGTAGAACTCGGTGAAAGTTCAGATAATCAATGCTCTCCTCACCATATAGAAATCAATACATTAATATTATATTTTTATTTAGTTTTATTATTATTTATGTGTGTTATAACACGTTTTTTAAGTTTTATAGATGGAATAGCTAGTTGGTGAGTTCATTGTCATCTATGGATGTTCAAGTTGCGAATATTTTGAAATATATTATTTTTTATGAAATTGATATAGTTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391219" ref_strand="+" ref_description="SGN-E391219 [TUS-48-H17]">
      <seq>aaaaaaaaaatataatattaatgtattgatttctatatggtgaggagagcattgattatctgaactttcaccgagttctacacgtacaatacatatatcagtttctagaggtgtacaactaaaagagatgattgtaattttaactttgccaagttttatgatttttaaattcagtattaacaagagcagcaatgttgaaaatgtcatcagtgtgagagagaggttttaaacccaagaaatctttggttaatatatgatcctcctcattcatacttccattgaattaaagttgttgatcttcttcctccttctccttttgtgaattcatgttgctcactccaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="-" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76958" stop="76015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76659" g_stop="76315" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="-" ref_id="SGN-E391219" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76659" e_stop="76315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAAAAATATAATATTAATGTATTGATTTCTATATGGTGAGGAGAGCATTGATTATCTGAACTTTCACCGAGTTCTACACGTACAATACATATATCAGTTTCTAGAGGTGTACAACTAAAAGAGATGATTGTAATTTTAACTTTGCCAAGTTTTATGATTTTTAAATTCAGTATTAACAAGAGCAGCAATGTTGAAAATGTCATCAGTGTGAGAGAGAGGTTTTAAACCCAAGAAATCTTTGGTTAATATATGATCCTCCTCATTCATACTTCCATTGAAGTAGAGTTGTTGATCTTCGTCCTCGTTCTCCTTTTTTGAATTCAAATTGTTGAATCCACCGA</genome_strand>
        <mrna_strand>AAAAAAAAAATATAATATTAATGTATTGATTTCTATATGGTGAGGAGAGCATTGATTATCTGAACTTTCACCGAGTTCTACACGTACAATACATATATCAGTTTCTAGAGGTGTACAACTAAAAGAGATGATTGTAATTTTAACTTTGCCAAGTTTTATGATTTTTAAATTCAGTATTAACAAGAGCAGCAATGTTGAAAATGTCATCAGTGTGAGAGAGAGGTTTTAAACCCAAGAAATCTTTGGTTAATATATGATCCTCCTCATTCATACTTCCATTGAATTAAAGTTGTTGATCTTCTTCCTCCTTCTCCTTTTGTGAATTCATGTTGCTCACTCCACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336751" ref_strand="+" ref_description="SGN-E336751 [cTOE-5-P7]">
      <seq>tttaacttacgatgactacaacactgaagaaaaacggcatttccagtttccgagcagtgggattgagattccgagcagcggcaatggcgaaaaaacgacgcgtcggaacgacgatcttcatgctccttttagctctcttagtattcggagctttcgcacctgcctttgctccgcttccttctctatcatctttttcttcccgttccgacatcgctagacttaattctatgggtgataagaacaaatttgagattgcggatgatatgttctggaaagatgggaagccttttcagatcattggcggggacttgcactattttcgggttcttccagagtactgggaagatcgactcctgagagcaaaggcattaggcttgaataccattcaaacatatgttccatggaatttgcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78182" stop="80699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78482" g_stop="78711" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78712" i_stop="79337" i_length="626">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79338" g_stop="79442" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="335" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79443" i_stop="80320" i_length="878">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80321" g_stop="80399" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="414" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E336751" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78482" e_stop="78711"/>
          <exon e_start="79338" e_stop="79442"/>
          <exon e_start="80321" e_stop="80399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTTACGATGACTACAACACTGAAGAAAAACGGCATTTCCAGTTTCCGAGCAGTGGGATTGAGATTCCGAGCAGCGGCAATGGCGAAAAAACGACGCGTCGGAACGACGATCTTCATGCTCCTTTTAGCTCTCTTAGTATTCGGAGCTTTCGCACCTGCCTTTGCTCCGCTTCCTTCTCTATCATCTTTTTCTTCCCGTTCCGACATCGCTAGACTTAATTCTATGGTATGATTGTGAAATTTCCTGCTTTGTTAAAAACCTAATTCTAGTTTGTAAGAAAAGTTAGAGAAGAGTAGCACTACTTTTGGTTGAAAGTTTGATCATCTACAGTGTGAACTTGAATAGACTTATTAGGAGTAGTAATTTTTGTTTGAGTTAATTTGGATTATTCAGTGTATAGTAGGTTAAGGATCAGCATAAAAATAGTCTGATTCTGATGAATTTTATTGAGCAGAAAGATACGAGTTCTGTCTGGAGTAGTTTAGGATTGAGCTGTAGGCGTGTAGCTGATTGATCAATTGCTCTTAGTTTGTATATTTAGGTTAAGGAAAAGCAAAAAACAGTCTAATTCTGATGTTTTTTCGTAGAGCAGAATGGATACAAGGTCTATCTGGACTAGTTTAGGATTGAGGTGTAGCTGATTGATCAATTGTACTTAAATTTGTATATTCAGTGTATTGAAGTAGGTAATGACCAGTATAAAAATAGTCTAATTATGATGAATTTCAAGAGTAAAAAGGATGCAAGGTCTGTATGGAGTATAGTTTAGGATTGAGGTATAGCTGATTACTTCATTTGTATATTATGCTAGAACGCTCATTCAGGAGCTGCATGCTTCTTTAAATTGGCAGGGTGATAAGAACAAATTTGAGATTGCGGATGATATGTTCTGGAAAGATGGGAAGCCTTTTCAGATCATTGGCGGGGACTTGCACTATTTTCGGGTTCTTCCAGAGGTACTATAATCCATGAGTTTTGTATTCATAGCTGAATGCTTCTGATCATAGTGTATAATCTTGTTGAAACACGTGCGCACACACAGATGTAAAAGATAGAGTGCTCCTTCGAAGCGAACGAGACTTAATTGATAGCTAACTTCATATGCTCTTGATGAACTTTATGTTAGGAAAATGATGATTGAAAGGTAACACTAGTACTGAAGTAATTTATCTCGAGTAAATAATTTCATTTGGTGCAGATTCTGCATTAATCATATAGTCTCTTTGTTCCAATTTATGTGGCATACCTTCCTCCTTAATGTGTCCCAAAAGAATACCATATTTCCTTATTTGGAAAAAATATTCTTAGTTTACCCTTAATGAGATGATTTATAGTCACACAGATGTCTAGGCTTATTTTAGACCACAAATGTCAAAACCCGTCTTTCTTAAACTCCATGCCATGTGAAACTCTGCCACATAAATTGAAGCAGAGGGAGTAGATGCCACGATGACAGTCATGACAGAATTTCTCTTACGTGAAATTTGAAAAGTTGTCTCATCTAAAAGGAATTATGTTCTTTCCATTTAGATGTTCTTTGAAATCCGTTATAGTGTAGTGCAAGTTACCTATGAAAACAACACCATATATGCCTTTCTGAGTTGCTTCTGTTGTTGTTCATCAAACATGTTGACAGAACTTGTAGTGATAGTTCATGGGCGTACATTAAGTTGAAAGTCAAACTTCCACTTTTAAGTCCTTCAAAGAGTGGTGAAAGCTGACAAATGAAGTTTCTTTTTTGATCTTGTTTCTTTTATCTGTAAGTTATGTTCTATTTTGTAGCTTGGTAATATCAATTTGAATTGACATATTGATGTATAAATACTCGCTTTAGTACTGGGAAGATCGACTCCTGAGAGCAAAGGCATTAGGCTTGAATACCATTCAAACATATGTCCCATGGAATTTGCACG</genome_strand>
        <mrna_strand>TTTAACTTACGATGACTACAACACTGAAGAAAAACGGCATTTCCAGTTTCCGAGCAGTGGGATTGAGATTCCGAGCAGCGGCAATGGCGAAAAAACGACGCGTCGGAACGACGATCTTCATGCTCCTTTTAGCTCTCTTAGTATTCGGAGCTTTCGCACCTGCCTTTGCTCCGCTTCCTTCTCTATCATCTTTTTCTTCCCGTTCCGACATCGCTAGACTTAATTCTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAGAACAAATTTGAGATTGCGGATGATATGTTCTGGAAAGATGGGAAGCCTTTTCAGATCATTGGCGGGGACTTGCACTATTTTCGGGTTCTTCCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGGAAGATCGACTCCTGAGAGCAAAGGCATTAGGCTTGAATACCATTCAAACATATGTTCCATGGAATTTGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711303" ref_strand="+" ref_description="SGN-E711303 [FB01CE07]">
      <seq>cgtagccgtgaccacacggtttcagctacacatggagatatggaccagaacactagagacataatcatgcgtgagtttcgctctggttcttcccgtgtccttatcacaactgatctgttggctcgtggtatcgatgtacaacaagtatcccttgttatcaactatgatctcccaactcagccggagaattatctccatcgtattggaagaagtggaaggtttggaaggaaaggagttgcgatcaactttgtgacaacagacgacgaaagaatgttgtttgatattcaaaaattctacaatgtggtcatcgaagaactcccttcaaacgtcgctgacctcctctgaaaacttcatctttataaggtgagtaccaagcttatagtatagaagaaatcattttaaactaccattattatctatcgtcaaaaacgcacccctggcattaatgttgctaagaattttgcagtcagtatgtagtaaggtcttggttttatttcatttccaaattcttatacttctttggcattaatttttagtgtagttaagttcttgattaatgttgtgttcttgttttagcacagaaatattaatgataaactgagaaatcttgataaaaaaaaaaaaaaaaaaaaactccccccgggccaatttcggcacaaggggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103P06-6ROpf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103P06.1" temp_strand="+" temp_description="C06HBa0103P06.1  AC211042.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0103P06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82459" stop="83672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82759" g_stop="83371" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="634"/>
      <MATCH_line gen_id="C06HBa0103P06.1" gen_strand="+" ref_id="SGN-E711303" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82759" e_stop="83371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCCGTGACCACACGGTTTCAGCTACACATGGAGATATGGACCAGAACACTAGAGACATAATCATGCGTGAGTTTCGCTCTGGTTCTTCCCGTGTCCTTATCACAACTGATCTGTTGGCTCGTGGTATCGATGTACAACAAGTATCCCTTGTTATCAACTATGATCTCCCAACTCAGCCGGAGAATTATCTCCATCGTATTGGAAGAAGTGGAAGGTTTGGAAGGAAAGGAGTTGCGATCAACTTTGTGACAACAGACGACGAAAGAATGTTGTTTGATATTCAAAAATTCTACAATGTGGTCATCGAAGAACTCCCTTCAAACGTCGCTGACCTCCTCTGAAAACTTCATCTTTATAAGGTGAGTACCAAGCTTATAGTATAGAAGAAATCATTTTAAACTACCATTATTATCTATCGTCAAAAACGCACCCCTGGCATTAATGTTGCTAAGAATTTTGCAGTCAGTATGTAGTAAGGTCTTGGTTTTATTTCATTTCCAAATTCTTATACTTCTTTGGCATTAATTTTTAGTGTAGTTAAGTTCTTGATTAATGTTGTGTTCTTGTTTTAGCACAGAAATATTAATGATAAACTGAGAAATCTTGATA</genome_strand>
        <mrna_strand>CGTAGCCGTGACCACACGGTTTCAGCTACACATGGAGATATGGACCAGAACACTAGAGACATAATCATGCGTGAGTTTCGCTCTGGTTCTTCCCGTGTCCTTATCACAACTGATCTGTTGGCTCGTGGTATCGATGTACAACAAGTATCCCTTGTTATCAACTATGATCTCCCAACTCAGCCGGAGAATTATCTCCATCGTATTGGAAGAAGTGGAAGGTTTGGAAGGAAAGGAGTTGCGATCAACTTTGTGACAACAGACGACGAAAGAATGTTGTTTGATATTCAAAAATTCTACAATGTGGTCATCGAAGAACTCCCTTCAAACGTCGCTGACCTCCTCTGAAAACTTCATCTTTATAAGGTGAGTACCAAGCTTATAGTATAGAAGAAATCATTTTAAACTACCATTATTATCTATCGTCAAAAACGCACCCCTGGCATTAATGTTGCTAAGAATTTTGCAGTCAGTATGTAGTAAGGTCTTGGTTTTATTTCATTTCCAAATTCTTATACTTCTTTGGCATTAATTTTTAGTGTAGTTAAGTTCTTGATTAATGTTGTGTTCTTGTTTTAGCACAGAAATATTAATGATAAACTGAGAAATCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>41</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9149" PGL_stop="1925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8939" e_stop="8601"/>
            <exon e_start="8501" e_stop="8461"/>
            <exon e_start="7465" e_stop="7396"/>
            <exon e_start="7313" e_stop="7165"/>
            <exon e_start="7090" e_stop="6995"/>
            <exon e_start="6910" e_stop="6840"/>
            <exon e_start="5516" e_stop="5455"/>
            <exon e_start="5372" e_stop="5309"/>
            <exon e_start="5216" e_stop="5132"/>
            <exon e_start="5047" e_stop="4921"/>
            <exon e_start="4781" e_stop="4699"/>
            <exon e_start="4625" e_stop="4562"/>
            <exon e_start="4259" e_stop="4123"/>
            <exon e_start="2601" e_stop="1925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8939" e_stop="8601" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8600" i_stop="8502" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8501" e_stop="8461" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8460" i_stop="7466" i_length="995"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7465" e_stop="7396" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.919" acc_prob="0.951">
            <gDNA_intron_boundary i_start="7395" i_stop="7314" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7313" e_stop="7165" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.930">
            <gDNA_intron_boundary i_start="7164" i_stop="7091" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7090" e_stop="6995" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.920">
            <gDNA_intron_boundary i_start="6994" i_stop="6911" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6910" e_stop="6840" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.230" acc_prob="0.988">
            <gDNA_intron_boundary i_start="6839" i_stop="5517" i_length="1323"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5516" e_stop="5455" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="5454" i_stop="5373" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5372" e_stop="5309" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5308" i_stop="5217" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="5216" e_stop="5132" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5131" i_stop="5048" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="5047" e_stop="4921" e_length="127"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.613">
            <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="4781" e_stop="4699" e_length="83"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="4625" e_stop="4562" e_length="64"/>
          </exon>
          <intron i_serial="12" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="4561" i_stop="4260" i_length="302"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="4259" e_stop="4123" e_length="137"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.880">
            <gDNA_intron_boundary i_start="4122" i_stop="2602" i_length="1521"/>
          </intron>
          <exon e_serial="14" e_score="0.990">
            <gDNA_exon_boundary e_start="2601" e_stop="1925" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8939" stop="8601"/>
              <exon start="8501" stop="8461"/>
              <exon start="7465" stop="7396"/>
              <exon start="7313" stop="7165"/>
              <exon start="7090" stop="6995"/>
              <exon start="6910" stop="6840"/>
              <exon start="5516" stop="5455"/>
              <exon start="5372" stop="5309"/>
              <exon start="5216" stop="5132"/>
              <exon start="5047" stop="4921"/>
              <exon start="4781" stop="4699"/>
              <exon start="4625" stop="4562"/>
              <exon start="4259" stop="4123"/>
              <exon start="2601" stop="1925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8926" stop="8601"/>
              <exon start="8501" stop="8461"/>
              <exon start="7465" stop="7396"/>
              <exon start="7313" stop="7165"/>
              <exon start="7090" stop="6995"/>
              <exon start="6910" stop="6840"/>
              <exon start="5516" stop="5473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5139" stop="5132"/>
              <exon start="5047" stop="4921"/>
              <exon start="4781" stop="4699"/>
              <exon start="4625" stop="4562"/>
              <exon start="4259" stop="4123"/>
              <exon start="2601" stop="2537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4994" stop="4921"/>
              <exon start="4781" stop="4699"/>
              <exon start="4625" stop="4562"/>
              <exon start="4259" stop="4123"/>
              <exon start="2601" stop="2154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGGTTAAGAGATAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCG : GTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTG : GAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAA : CTGGAGTCCCCAATTTAAAATGGTTTGGAGTTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAAGATCTTTTCAACTTCTGCAATAGGAAAATGTCCTTGAAGACCGTTCTCATGCTTGCAGATCAGATG : ATCAATCGGGTTGAGTTTGTTCATGCCAAATCTTTTCTTCATCGAGATATAAAACCTGACAACTTTCTTATGGGATTAGGAAGACGTGCAAATCAG : GTCTATGTTATTGATTTTGGGCTGGCTAAGAAGTACAGAGACTCATCAACTCATCAGCATATTCCGTATAG : AGAAAATAAAAATTTGACAGGAACTGCTAGATATGCAAGCATGAACACTCACCTCGGCATTG : AACAAAGTCGAAGGGATGATTTGGAATCATTGGGTTTTGTTCTGATGTACTTTTTAAGAGGAAG : TCTCCCTTGGCAGGGGCTGAAAGCAGGCAATAAGAAACAGAAGTATGAGAGGATCAGTGAGAAGAAAGTTTCAACGTCAATAGAG : ACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAG : GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT : GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAG : GTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAG : TTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCGAGACCCAGTGATTACTGGGGGTGAACCTGACCTCTCCCGCCCTCAGACACTAGATGCAGCAGGCGCAGCATCACTGCGTAAAATATTTAATACTACCCAGAAGACTTCACCAGTTGTGTCTTCAGAGCACAAGCGCAGCTCCTCCACAAGAAACACAAACCTAAAGAATTTAGAGTCTGCCATCAAAGGAATAGAGGGTTTAAGCTTTCGATGATGAGGTACTGGATTAGTAGCTCTGCTTTGTCACAATTCCCCCTCTACTGTATATCTTGGCACAGCAAACACACCAACATGGCGGAGTATGAGTTCTGATATTAGTTGTTTCCAGGAGGAACCATAAACAATGCAACCCCCGCAAACTCACAAATCCCAGTTTATGTTTTGTCCATACAGACACAGTTATAGGCACTTATCGTATTCTTTTTCGTCTCTATCTCTCCTGTTCTTGTTCTATCGTGTTATTCATATTTATCTTATGTTGTGAATTATGAAGAGGCCCATATATAATTGCCGATTTATATGGTCCACGAGATGTTTGACGCTAGCAGATTCTTCTGCTTTGGACATGAGCAAACTCTCTTTTGTTTCAAGCTATTTAAATATCAATCACAG</gDNA_template>
            <first_frame> W  G  *  E  I  E  S  G  P  D  Y  S  K  W  D  D  N  K  A  Y  T  *  S  *  C  C  F  I  L  H  L  L  E  A  K  L  M  K  E  Q  N  P  K  K  E  L  F  K  K  L  K  S  *  F  F  F  F  L  I  H  F  H  S  M  L  D  *  I  F  Q  G  L  C  G  E  V  F  F  F  F  Q  I  *  I  F  S  L  R  W  S  L  V  L  V  I  S  S  G  L  A  G  K  L  V  A  V  L  L  G  R  S  T  S  :  V  V  M  F  K  L  M  K  R  L  L  S  S  W :   K  M  *  K  Q  S  I  L  N  C  C  T  K  Q  S  C  I  K  Y  Y  K  E  E  :  L  E  S  P  I  *  N  G  L  E  L  K  E  I  T  M  S  L  *  W  I  Y  W  D  L  V  L  K  I  F  S  T  S  A  I  G  K  C  P  *  R  P  F  S  C  L  Q  I  R  * :   S  I  G  L  S  L  F  M  P  N  L  F  F  I  E  I  *  N  L  T  T  F  L  W  D  *  E  D  V  Q  I  R :   S  M  L  L  I  L  G  W  L  R  S  T  E  T  H  Q  L  I  S  I  F  R  I   : E  K  I  K  I  *  Q  E  L  L  D  M  Q  A  *  T  L  T  S  A  L  :  N  K  V  E  G  M  I  W  N  H  W  V  L  F  *  C  T  F  *  E  E   : V  S  L  G  R  G  *  K  Q  A  I  R  N  R  S  M  R  G  S  V  R  R  K  F  Q  R  Q  *  R :   P  C  V  E  A  I  L  Q  S  L  H  H  I  F  I  T  V  D  H  *  D  L  M  I  N  Q  I  M  L  I  S  R  E  F  S  V  T  F  S  F  V  K  :  G  F  S  L  I  M  Y  L  T  G  P  Y  *  N  I  S  N  H  S  L  P  I  F  H  L  V  L  L :   A  V  L  L  G  Q  V  Q  G  R  L  M  V  L  L  M  S  K  R  N  Q  :  V  V  K  K  D  G  Q  L  V  G  L  H  Q  I  *  H  V  I  G  A  Q  G  S  I  S  M  L  E  A  Y  *  S  K  K  A  Q  L  L  M  I  Y  L  W  V  K  S :   Y  L  V  L  I  F  S  G  Q  V  D  Q  Q  G  N  L  M  S  L  A  V  E  T  Q  *  L  L  G  V  N  L  T  S  P  A  L  R  H  *  M  Q  Q  A  Q  H  H  C  V  K  Y  L  I  L  P  R  R  L  H  Q  L  C  L  Q  S  T  S  A  A  P  P  Q  E  T  Q  T  *  R  I  *  S  L  P  S  K  E  *  R  V  *  A  F  D  D  E  V  L  D  *  *  L  C  F  V  T  I  P  P  L  L  Y  I  L  A  Q  Q  T  H  Q  H  G  G  V  *  V  L  I  L  V  V  S  R  R  N  H  K  Q  C  N  P  R  K  L  T  N  P  S  L  C  F  V  H  T  D  T  V  I  G  T  Y  R  I  L  F  R  L  Y  L  S  C  S  C  S  I  V  L  F  I  F  I  L  C  C  E  L  *  R  G  P  Y  I  I  A  D  L  Y  G  P  R  D  V  *  R  *  Q  I  L  L  L  W  T  *  A  N  S  L  L  F  Q  A  I  *  I  S  I  T  </first_frame>
            <second_frame>  G  V  K  R  *  N  Q  G  Q  I  I  Q  N  G  M  I  I  K  H  T  L  E  V  D  A  A  S  F  C  T  F  L  R  Q  N  S  *  R  N  K  T  P  K  K  N  Y  S  K  S  *  N  L  D  F  S  F  F  *  F  I  F  I  L  C  W  I  E  F  F  R  V  C  V  V  K  F  F  F  F  F  K  F  K  F  L  V  S  D  G  A  S  C  W  *  *  V  Q  A  W  P  E  N  W  *  R  F  F  W  G  D  L  P  R :   W  *  C  S  N  *  *  R  G  C  Y  Q  A   : G  K  C  E  N  K  A  S  S  T  V  V  R  S  K  A  V  *  N  T  T  R  R  N :   W  S  P  Q  F  K  M  V  W  S  *  R  R  L  Q  C  P  C  D  G  F  T  G  T  *  S  *  R  S  F  Q  L  L  Q  *  E  N  V  L  E  D  R  S  H  A  C  R  S  D   : D  Q  S  G  *  V  C  S  C  Q  I  F  S  S  S  R  Y  K  T  *  Q  L  S  Y  G  I  R  K  T  C  K  S   : G  L  C  Y  *  F  W  A  G  *  E  V  Q  R  L  I  N  S  S  A  Y  S  V  *  :  R  K  *  K  F  D  R  N  C  *  I  C  K  H  E  H  S  P  R  H  * :   T  K  S  K  G  *  F  G  I  I  G  F  C  S  D  V  L  F  K  R  K  :  S  P  L  A  G  A  E  S  R  Q  *  E  T  E  V  *  E  D  Q  *  E  E  S  F  N  V  N  R   : D  L  V  S  R  L  S  C  R  V  C  I  I  F  S  L  L  S  I  T  E  I  *  *  *  T  R  L  C  L  S  Q  E  N  F  P  *  P  F  H  S  *  R :   V  S  V  *  L  C  I  *  L  D  H  I  E  I  S  A  I  T  A  C  Q  Y  S  I  S  C  S   : W  R  Y  C  W  A  K  F  R  D  A  S  W  S  C  *  C  R  K  E  I  R :   W  *  R  R  T  A  N  W  L  V  F  I  K  S  D  T  *  *  E  H  R  A  Q  F  Q  C  W  K  L  I  E  A  K  R  H  S  C  *  *  F  I  C  G  *  R   : V  T  *  F  *  F  F  P  V  K  W  I  S  K  A  T  *  C  L  *  Q  S  R  P  S  D  Y  W  G  *  T  *  P  L  P  P  S  D  T  R  C  S  R  R  S  I  T  A  *  N  I  *  Y  Y  P  E  D  F  T  S  C  V  F  R  A  Q  A  Q  L  L  H  K  K  H  K  P  K  E  F  R  V  C  H  Q  R  N  R  G  F  K  L  S  M  M  R  Y  W  I  S  S  S  A  L  S  Q  F  P  L  Y  C  I  S  W  H  S  K  H  T  N  M  A  E  Y  E  F  *  Y  *  L  F  P  G  G  T  I  N  N  A  T  P  A  N  S  Q  I  P  V  Y  V  L  S  I  Q  T  Q  L  *  A  L  I  V  F  F  F  V  S  I  S  P  V  L  V  L  S  C  Y  S  Y  L  S  Y  V  V  N  Y  E  E  A  H  I  *  L  P  I  Y  M  V  H  E  M  F  D  A  S  R  F  F  C  F  G  H  E  Q  T  L  F  C  F  K  L  F  K  Y  Q  S  Q </second_frame>
            <third_frame>   G  L  R  D  R  I  R  A  R  L  F  K  M  G  *  *  *  S  I  H  L  K  L  M  L  L  H  F  A  P  S  *  G  K  T  H  E  G  T  K  P  Q  K  R  I  I  Q  K  A  E  I  L  I  F  L  F  F  D  S  F  S  F  Y  V  G  L  N  F  S  G  F  V  W  *  S  F  F  F  F  S  N  L  N  F  *  S  P  M  E  P  R  V  G  N  K  F  R  L  G  R  K  I  G  S  G  S  F  G  E  I  Y  L   : G  G  N  V  Q  T  N  E  E  V  A  I  K  L  :  E  N  V  K  T  K  H  P  Q  L  L  Y  E  A  K  L  Y  K  I  L  Q  G  G   : T  G  V  P  N  L  K  W  F  G  V  E  G  D  Y  N  V  L  V  M  D  L  L  G  P  S  L  E  D  L  F  N  F  C  N  R  K  M  S  L  K  T  V  L  M  L  A  D  Q  M  :  I  N  R  V  E  F  V  H  A  K  S  F  L  H  R  D  I  K  P  D  N  F  L  M  G  L  G  R  R  A  N  Q  :  V  Y  V  I  D  F  G  L  A  K  K  Y  R  D  S  S  T  H  Q  H  I  P  Y  R :   E  N  K  N  L  T  G  T  A  R  Y  A  S  M  N  T  H  L  G  I   : E  Q  S  R  R  D  D  L  E  S  L  G  F  V  L  M  Y  F  L  R  G  S :   L  P  W  Q  G  L  K  A  G  N  K  K  Q  K  Y  E  R  I  S  E  K  K  V  S  T  S  I  E  :  T  L  C  R  G  Y  P  A  E  F  A  S  Y  F  H  Y  C  R  S  L  R  F  D  D  K  P  D  Y  A  Y  L  K  R  I  F  R  D  L  F  I  R  E   : G  F  Q  F  D  Y  V  F  D  W  T  I  L  K  Y  Q  Q  S  Q  L  A  N  I  P  S  R  A  L  :  G  G  T  A  G  P  S  S  G  T  P  H  G  L  A  N  V  E  K  K  S   : G  G  E  E  G  R  P  T  G  W  S  S  S  N  L  T  R  N  R  S  T  G  L  N  F  N  A  G  S  L  L  K  Q  K  G  T  V  A  N  D  L  S  V  G  K  E  :  L  P  S  S  N  F  F  R  S  S  G  S  A  R  Q  P  N  V  S  S  S  R  D  P  V  I  T  G  G  E  P  D  L  S  R  P  Q  T  L  D  A  A  G  A  A  S  L  R  K  I  F  N  T  T  Q  K  T  S  P  V  V  S  S  E  H  K  R  S  S  S  T  R  N  T  N  L  K  N  L  E  S  A  I  K  G  I  E  G  L  S  F  R  *  *  G  T  G  L  V  A  L  L  C  H  N  S  P  S  T  V  Y  L  G  T  A  N  T  P  T  W  R  S  M  S  S  D  I  S  C  F  Q  E  E  P  *  T  M  Q  P  P  Q  T  H  K  S  Q  F  M  F  C  P  Y  R  H  S  Y  R  H  L  S  Y  S  F  S  S  L  S  L  L  F  L  F  Y  R  V  I  H  I  Y  L  M  L  *  I  M  K  R  P  I  Y  N  C  R  F  I  W  S  T  R  C  L  T  L  A  D  S  S  A  L  D  M  S  K  L  S  F  V  S  S  Y  L  N  I  N  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8682" stop="8601"/>
                    <exon start="8501" stop="8461"/>
                    <exon start="7465" stop="7396"/>
                    <exon start="7313" stop="7165"/>
                    <exon start="7090" stop="6995"/>
                    <exon start="6910" stop="6840"/>
                    <exon start="5516" stop="5455"/>
                    <exon start="5372" stop="5309"/>
                    <exon start="5216" stop="5132"/>
                    <exon start="5047" stop="4921"/>
                    <exon start="4781" stop="4699"/>
                    <exon start="4625" stop="4562"/>
                    <exon start="4259" stop="4123"/>
                    <exon start="2601" stop="2323"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPMEPRVGNKFRLGRKIGSGSFGEIYLGGNVQTNEEVAIKLENVKTKHPQLLYEAKLYKILQGGTGVPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCNRKMSLKTVLMLADQMINRVEFVHAKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGNKKQKYERISEKKVSTSIETLCRGYPAEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLANIPSRALGGTAGPSSGTPHGLANVEKKSGGEEGRPTGWSSSNLTRNRSTGLNFNAGSLLKQKGTVANDLSVGKELPSSNFFRSSGSARQPNVSSSRDPVITGGEPDLSRPQTLDAAGAASLRKIFNTTQKTSPVVSSEHKRSSSTRNTNLKNLESAIKGIEGLSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5051" e_stop="4921"/>
            <exon e_start="4781" e_stop="4699"/>
            <exon e_start="4625" e_stop="4562"/>
            <exon e_start="4259" e_stop="4123"/>
            <exon e_start="2601" e_stop="2154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.613" e_score="0.977"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="5051" e_stop="4921" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.613">
            <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4781" e_stop="4699" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4625" e_stop="4562" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="4561" i_stop="4260" i_length="302"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4259" e_stop="4123" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.880">
            <gDNA_intron_boundary i_start="4122" i_stop="2602" i_length="1521"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2601" e_stop="2154" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5051" stop="4921"/>
              <exon start="4781" stop="4699"/>
              <exon start="4625" stop="4562"/>
              <exon start="4259" stop="4123"/>
              <exon start="2601" stop="2580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4994" stop="4921"/>
              <exon start="4781" stop="4699"/>
              <exon start="4625" stop="4562"/>
              <exon start="4259" stop="4123"/>
              <exon start="2601" stop="2154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGACCTTGTGTCGAGGCTATCCTGCAGAGTTTGCATCATATTTTCATTACTGTCGATCACTGAGATTTGATGATAAACCAGATTATGCTTATCTCAAGAGAATTTTCCGTGACCTTTTCATTCGTGAAG : GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT : GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAG : GTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCTGTGGGTAAAGAG : TTACCTAGTTCTAATTTTTTCCGGTCAAGTGGATCAGCAAGGCAACCTAATGTCTCTAGCAGTCGAGACCCAGTGATTACTGGGGGTGAACCTGACCTCTCCCGCCCTCAGACACTAGATGCAGCAGGCGCAGCATCACTGCGTAAAATATTTAATACTACCCAGAAGACTTCACCAGTTGTGTCTTCAGAGCACAAGCGCAGCTCCTCCACAAGAAACACAAACCTAAAGAATTTAGAGTCTGCCATCAAAGGAATAGAGGGTTTAAGCTTTCGATGATGAGGTACTGGATTAGTAGCTCTGCTTTGTCACAATTCCCCCTCTACTGTATATCTTGGCACAGCAAACACACCAACATGGCGGAGTATGAGTTCTGATATTAGTTGTTTCCAGGAGGAACCATAAACAATGCAACCCCCGCAAACTCACAAATCCCAGTTTATGTTTT</gDNA_template>
            <first_frame> I  D  L  V  S  R  L  S  C  R  V  C  I  I  F  S  L  L  S  I  T  E  I  *  *  *  T  R  L  C  L  S  Q  E  N  F  P  *  P  F  H  S  *  R :   V  S  V  *  L  C  I  *  L  D  H  I  E  I  S  A  I  T  A  C  Q  Y  S  I  S  C  S   : W  R  Y  C  W  A  K  F  R  D  A  S  W  S  C  *  C  R  K  E  I  R :   W  *  R  R  T  A  N  W  L  V  F  I  K  S  D  T  *  *  E  H  R  A  Q  F  Q  C  W  K  L  I  E  A  K  R  H  S  C  *  *  F  I  C  G  *  R   : V  T  *  F  *  F  F  P  V  K  W  I  S  K  A  T  *  C  L  *  Q  S  R  P  S  D  Y  W  G  *  T  *  P  L  P  P  S  D  T  R  C  S  R  R  S  I  T  A  *  N  I  *  Y  Y  P  E  D  F  T  S  C  V  F  R  A  Q  A  Q  L  L  H  K  K  H  K  P  K  E  F  R  V  C  H  Q  R  N  R  G  F  K  L  S  M  M  R  Y  W  I  S  S  S  A  L  S  Q  F  P  L  Y  C  I  S  W  H  S  K  H  T  N  M  A  E  Y  E  F  *  Y  *  L  F  P  G  G  T  I  N  N  A  T  P  A  N  S  Q  I  P  V  Y  V   </first_frame>
            <second_frame>  *  T  L  C  R  G  Y  P  A  E  F  A  S  Y  F  H  Y  C  R  S  L  R  F  D  D  K  P  D  Y  A  Y  L  K  R  I  F  R  D  L  F  I  R  E   : G  F  Q  F  D  Y  V  F  D  W  T  I  L  K  Y  Q  Q  S  Q  L  A  N  I  P  S  R  A  L  :  G  G  T  A  G  P  S  S  G  T  P  H  G  L  A  N  V  E  K  K  S   : G  G  E  E  G  R  P  T  G  W  S  S  S  N  L  T  R  N  R  S  T  G  L  N  F  N  A  G  S  L  L  K  Q  K  G  T  V  A  N  D  L  S  V  G  K  E  :  L  P  S  S  N  F  F  R  S  S  G  S  A  R  Q  P  N  V  S  S  S  R  D  P  V  I  T  G  G  E  P  D  L  S  R  P  Q  T  L  D  A  A  G  A  A  S  L  R  K  I  F  N  T  T  Q  K  T  S  P  V  V  S  S  E  H  K  R  S  S  S  T  R  N  T  N  L  K  N  L  E  S  A  I  K  G  I  E  G  L  S  F  R  *  *  G  T  G  L  V  A  L  L  C  H  N  S  P  S  T  V  Y  L  G  T  A  N  T  P  T  W  R  S  M  S  S  D  I  S  C  F  Q  E  E  P  *  T  M  Q  P  P  Q  T  H  K  S  Q  F  M  F  </second_frame>
            <third_frame>   R  P  C  V  E  A  I  L  Q  S  L  H  H  I  F  I  T  V  D  H  *  D  L  M  I  N  Q  I  M  L  I  S  R  E  F  S  V  T  F  S  F  V  K  :  G  F  S  L  I  M  Y  L  T  G  P  Y  *  N  I  S  N  H  S  L  P  I  F  H  L  V  L  L :   A  V  L  L  G  Q  V  Q  G  R  L  M  V  L  L  M  S  K  R  N  Q  :  V  V  K  K  D  G  Q  L  V  G  L  H  Q  I  *  H  V  I  G  A  Q  G  S  I  S  M  L  E  A  Y  *  S  K  K  A  Q  L  L  M  I  Y  L  W  V  K  S :   Y  L  V  L  I  F  S  G  Q  V  D  Q  Q  G  N  L  M  S  L  A  V  E  T  Q  *  L  L  G  V  N  L  T  S  P  A  L  R  H  *  M  Q  Q  A  Q  H  H  C  V  K  Y  L  I  L  P  R  R  L  H  Q  L  C  L  Q  S  T  S  A  A  P  P  Q  E  T  Q  T  *  R  I  *  S  L  P  S  K  E  *  R  V  *  A  F  D  D  E  V  L  D  *  *  L  C  F  V  T  I  P  P  L  L  Y  I  L  A  Q  Q  T  H  Q  H  G  G  V  *  V  L  I  L  V  V  S  R  R  N  H  K  Q  C  N  P  R  K  L  T  N  P  S  L  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5047" stop="4921"/>
                    <exon start="4781" stop="4699"/>
                    <exon start="4625" stop="4562"/>
                    <exon start="4259" stop="4123"/>
                    <exon start="2601" stop="2323"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLCRGYPAEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLANIPSRALGGTAGPSSGTPHGLANVEKKSGGEEGRPTGWSSSNLTRNRSTGLNFNAGSLLKQKGTVANDLSVGKELPSSNFFRSSGSARQPNVSSSRDPVITGGEPDLSRPQTLDAAGAASLRKIFNTTQKTSPVVSSEHKRSSSTRNTNLKNLESAIKGIEGLSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4951" e_stop="4921"/>
            <exon e_start="4781" e_stop="4699"/>
            <exon e_start="4625" e_stop="4135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4951" e_stop="4921" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.613">
            <gDNA_intron_boundary i_start="4920" i_stop="4782" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4781" e_stop="4699" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4698" i_stop="4626" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4625" e_stop="4135" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4951" stop="4921"/>
              <exon start="4781" stop="4699"/>
              <exon start="4625" stop="4135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTTTCCGTGACCTTTTCATTCGTGAAG : GGTTTCAGTTTGATTATGTATTTGACTGGACCATATTGAAATATCAGCAATCACAGCTTGCCAATATTCCATCTCGTGCTCTT : GGCGGTACTGCTGGGCCAAGTTCAGGGACGCCTCATGGTCTTGCTAATGTCGAAAAGAAATCAGGTATGTTTGGTCTCGATATCCTCCTCCCTCAACCACAAAAAAGAAGGAAAGATTAACAAGAAAAAGTTAATTAGAAGACTTAGCAATCAGTCTGTGCTAACTAGTGTGGCATAAAGTGGTTCTATGTATCTTGTCTCTTATGTATACGTGAAAAGTTACAATTGGAATCCATTTCAATTGGTCCATTATGTCATTTATTTTGGATGGCATGCCAGATGTTCTGTTCAGGAAAGTACATTACCTCTAAATATGCTAGCTTCTTATTCTCTGGGAGCTATATATGCTTGCTACTCAATATGCAGGTGGTGAAGAAGGACGGCCAACTGGTTGGTCTTCATCAAATCTGACACGTAATAGGAGCACAGGGCTCAATTTCAATGCTGGAAGCTTATTGAAGCAAAAAGGCACAGTTGCTAATGATTTATCT</gDNA_template>
            <first_frame> R  I  F  R  D  L  F  I  R  E   : G  F  Q  F  D  Y  V  F  D  W  T  I  L  K  Y  Q  Q  S  Q  L  A  N  I  P  S  R  A  L  :  G  G  T  A  G  P  S  S  G  T  P  H  G  L  A  N  V  E  K  K  S  G  M  F  G  L  D  I  L  L  P  Q  P  Q  K  R  R  K  D  *  Q  E  K  V  N  *  K  T  *  Q  S  V  C  A  N  *  C  G  I  K  W  F  Y  V  S  C  L  L  C  I  R  E  K  L  Q  L  E  S  I  S  I  G  P  L  C  H  L  F  W  M  A  C  Q  M  F  C  S  G  K  Y  I  T  S  K  Y  A  S  F  L  F  S  G  S  Y  I  C  L  L  L  N  M  Q  V  V  K  K  D  G  Q  L  V  G  L  H  Q  I  *  H  V  I  G  A  Q  G  S  I  S  M  L  E  A  Y  *  S  K  K  A  Q  L  L  M  I  Y   </first_frame>
            <second_frame>  E  F  S  V  T  F  S  F  V  K  :  G  F  S  L  I  M  Y  L  T  G  P  Y  *  N  I  S  N  H  S  L  P  I  F  H  L  V  L  L :   A  V  L  L  G  Q  V  Q  G  R  L  M  V  L  L  M  S  K  R  N  Q  V  C  L  V  S  I  S  S  S  L  N  H  K  K  E  G  K  I  N  K  K  K  L  I  R  R  L  S  N  Q  S  V  L  T  S  V  A  *  S  G  S  M  Y  L  V  S  Y  V  Y  V  K  S  Y  N  W  N  P  F  Q  L  V  H  Y  V  I  Y  F  G  W  H  A  R  C  S  V  Q  E  S  T  L  P  L  N  M  L  A  S  Y  S  L  G  A  I  Y  A  C  Y  S  I  C  R  W  *  R  R  T  A  N  W  L  V  F  I  K  S  D  T  *  *  E  H  R  A  Q  F  Q  C  W  K  L  I  E  A  K  R  H  S  C  *  *  F  I  </second_frame>
            <third_frame>   N  F  P  *  P  F  H  S  *  R :   V  S  V  *  L  C  I  *  L  D  H  I  E  I  S  A  I  T  A  C  Q  Y  S  I  S  C  S   : W  R  Y  C  W  A  K  F  R  D  A  S  W  S  C  *  C  R  K  E  I  R  Y  V  W  S  R  Y  P  P  P  S  T  T  K  K  K  E  R  L  T  R  K  S  *  L  E  D  L  A  I  S  L  C  *  L  V  W  H  K  V  V  L  C  I  L  S  L  M  Y  T  *  K  V  T  I  G  I  H  F  N  W  S  I  M  S  F  I  L  D  G  M  P  D  V  L  F  R  K  V  H  Y  L  *  I  C  *  L  L  I  L  W  E  L  Y  M  L  A  T  Q  Y  A  G  G  E  E  G  R  P  T  G  W  S  S  S  N  L  T  R  N  R  S  T  G  L  N  F  N  A  G  S  L  L  K  Q  K  G  T  V  A  N  D  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4457" stop="4215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGIKWFYVSCLLCIREKLQLESISIGPLCHLFWMACQMFCSGKYITSKYASFLFSGSYICLLLNMQVVKKDGQLVGLHQI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4951" stop="4921"/>
                    <exon start="4781" stop="4699"/>
                    <exon start="4625" stop="4506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIFRDLFIREGFQFDYVFDWTILKYQQSQLANIPSRALGGTAGPSSGTPHGLANVEKKSGMFGLDILLPQPQKRRKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4742" stop="4699"/>
                    <exon start="4625" stop="4448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISNHSLPIFHLVLLAVLLGQVQGRLMVLLMSKRNQVCLVSISSSLNHKKEGKINKKKLIRRLSNQSVLTSVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4447" stop="4253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGSMYLVSYVYVKSYNWNPFQLVHYVIYFGWHARCSVQESTLPLNMLASYSLGAIYACYSICRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9149" e_stop="8601"/>
            <exon e_start="8501" e_stop="8461"/>
            <exon e_start="7465" e_stop="7354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9149" e_stop="8601" e_length="549"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8600" i_stop="8502" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8501" e_stop="8461" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8460" i_stop="7466" i_length="995"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="7465" e_stop="7354" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9149" stop="8601"/>
              <exon start="8501" stop="8461"/>
              <exon start="7465" stop="7354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTTTCTGATTGAAATACGTATGGGCCGACTATGAAATACACTGTATATTCATTCAGTTCCCTCTGATGAATTTATCTACAACACTACGTACGACGCTGTATCATGGGGATCGACTAGGGTGGGTGGGGACAAGAAGATAGTATTACGAAAGCAAAAAGACAGAACTAAACGTATATATATATATATAAAATAATAGAAGGAAGAAATTGGGGTTAAGAGATAGAATCAGGGCCAGATTATTCAAAATGGGATGATAATAAAGCATACACTTGAAGTTGATGCTGCTTCATTTTGCACCTTCTTGAGGCAAAACTCATGAAGGAACAAAACCCCAAAAAAGAATTATTCAAAAAGCTGAAATCTTGATTTTTCTTTTTTTTGATTCATTTTCATTCTATGTTGGATTGAATTTTTCAGGGTTTGTGTGGTGAAGTTTTTTTTTTTTTTCAAATTTAAATTTTTAGTCTCCGATGGAGCCTCGTGTTGGTAATAAGTTCAGGCTTGGCCGGAAAATTGGTAGCGGTTCTTTTGGGGAGATCTACCTCG : GTGGTAATGTTCAAACTAATGAAGAGGTTGCTATCAAGCTG : GAAAATGTGAAAACAAAGCATCCTCAACTGTTGTACGAAGCAAAGCTGTATAAAATACTACAAGGAGGAAGTAATTTCTCATCTTCATGTTGCCTGTTCTCTTCATTAACTA</gDNA_template>
            <first_frame> E  V  S  D  *  N  T  Y  G  P  T  M  K  Y  T  V  Y  S  F  S  S  L  *  *  I  Y  L  Q  H  Y  V  R  R  C  I  M  G  I  D  *  G  G  W  G  Q  E  D  S  I  T  K  A  K  R  Q  N  *  T  Y  I  Y  I  Y  K  I  I  E  G  R  N  W  G  *  E  I  E  S  G  P  D  Y  S  K  W  D  D  N  K  A  Y  T  *  S  *  C  C  F  I  L  H  L  L  E  A  K  L  M  K  E  Q  N  P  K  K  E  L  F  K  K  L  K  S  *  F  F  F  F  L  I  H  F  H  S  M  L  D  *  I  F  Q  G  L  C  G  E  V  F  F  F  F  Q  I  *  I  F  S  L  R  W  S  L  V  L  V  I  S  S  G  L  A  G  K  L  V  A  V  L  L  G  R  S  T  S  :  V  V  M  F  K  L  M  K  R  L  L  S  S  W :   K  M  *  K  Q  S  I  L  N  C  C  T  K  Q  S  C  I  K  Y  Y  K  E  E  V  I  S  H  L  H  V  A  C  S  L  H  *  L </first_frame>
            <second_frame>  K  F  L  I  E  I  R  M  G  R  L  *  N  T  L  Y  I  H  S  V  P  S  D  E  F  I  Y  N  T  T  Y  D  A  V  S  W  G  S  T  R  V  G  G  D  K  K  I  V  L  R  K  Q  K  D  R  T  K  R  I  Y  I  Y  I  K  *  *  K  E  E  I  G  V  K  R  *  N  Q  G  Q  I  I  Q  N  G  M  I  I  K  H  T  L  E  V  D  A  A  S  F  C  T  F  L  R  Q  N  S  *  R  N  K  T  P  K  K  N  Y  S  K  S  *  N  L  D  F  S  F  F  *  F  I  F  I  L  C  W  I  E  F  F  R  V  C  V  V  K  F  F  F  F  F  K  F  K  F  L  V  S  D  G  A  S  C  W  *  *  V  Q  A  W  P  E  N  W  *  R  F  F  W  G  D  L  P  R :   W  *  C  S  N  *  *  R  G  C  Y  Q  A   : G  K  C  E  N  K  A  S  S  T  V  V  R  S  K  A  V  *  N  T  T  R  R  K  *  F  L  I  F  M  L  P  V  L  F  I  N   </second_frame>
            <third_frame>   S  F  *  L  K  Y  V  W  A  D  Y  E  I  H  C  I  F  I  Q  F  P  L  M  N  L  S  T  T  L  R  T  T  L  Y  H  G  D  R  L  G  W  V  G  T  R  R  *  Y  Y  E  S  K  K  T  E  L  N  V  Y  I  Y  I  *  N  N  R  R  K  K  L  G  L  R  D  R  I  R  A  R  L  F  K  M  G  *  *  *  S  I  H  L  K  L  M  L  L  H  F  A  P  S  *  G  K  T  H  E  G  T  K  P  Q  K  R  I  I  Q  K  A  E  I  L  I  F  L  F  F  D  S  F  S  F  Y  V  G  L  N  F  S  G  F  V  W  *  S  F  F  F  F  S  N  L  N  F  *  S  P  M  E  P  R  V  G  N  K  F  R  L  G  R  K  I  G  S  G  S  F  G  E  I  Y  L   : G  G  N  V  Q  T  N  E  E  V  A  I  K  L  :  E  N  V  K  T  K  H  P  Q  L  L  Y  E  A  K  L  Y  K  I  L  Q  G  G  S  N  F  S  S  S  C  C  L  F  S  S  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8682" stop="8601"/>
                    <exon start="8501" stop="8461"/>
                    <exon start="7465" stop="7355"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPMEPRVGNKFRLGRKIGSGSFGEIYLGGNVQTNEEVAIKLENVKTKHPQLLYEAKLYKILQGGSNFSSSCCLFSSLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12964" PGL_stop="11448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12964" e_stop="12871"/>
            <exon e_start="12770" e_stop="12645"/>
            <exon e_start="11792" e_stop="11684"/>
            <exon e_start="11579" e_stop="11448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.978" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12964" e_stop="12871" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12870" i_stop="12771" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="12770" e_stop="12645" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12644" i_stop="11793" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11792" e_stop="11684" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.918">
            <gDNA_intron_boundary i_start="11683" i_stop="11580" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="11579" e_stop="11448" e_length="132"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12964" stop="12871"/>
              <exon start="12770" stop="12645"/>
              <exon start="11792" stop="11684"/>
              <exon start="11579" stop="11448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGCGTATGATATGAAGCATCATTTTTTGAATTTAGCAGTCAGCTGTGCATCTGTCATTTGCTGCCGTGTCTCTCCTAAGCAGAAGGCCTTG : GTTACTAGGTTAGTAAAGGAAGGAACTGGGAAAACCACATTAGCAATTGGTGATGGTGCAAATGATGTTGGGATGATCCAAGAAGCGGACATTGGAGTTGGCATTAGCGGTGCAGAAGGAATGCAG : CTTCTTGCAGGCTGTGATGGCTAGTGACTTTGCTATTGCACAGTTTCGGTTCTTGGAGAGACTTCTTGTTGTACACGGGCATTGGTGCTACAAAAGAATTGCTCAAATG : ATATGCTATTTCTTCTACAAAAATATAGCTTTTGGTCTCACACTCTTTTACTTTGAGGCTTTTGCGGGCTTTTCGGGCCAGTCTGTCTATGATGATTCATACATGATTCTGTTCAATGTGATTCTTACCTCA</gDNA_template>
            <first_frame> F  G  V  *  Y  E  A  S  F  F  E  F  S  S  Q  L  C  I  C  H  L  L  P  C  L  S  *  A  E  G  L   : G  Y  *  V  S  K  G  R  N  W  E  N  H  I  S  N  W  *  W  C  K  *  C  W  D  D  P  R  S  G  H  W  S  W  H  *  R  C  R  R  N  A   : A  S  C  R  L  *  W  L  V  T  L  L  L  H  S  F  G  S  W  R  D  F  L  L  Y  T  G  I  G  A  T  K  E  L  L  K  * :   Y  A  I  S  S  T  K  I  *  L  L  V  S  H  S  F  T  L  R  L  L  R  A  F  R  A  S  L  S  M  M  I  H  T  *  F  C  S  M  *  F  L  P   </first_frame>
            <second_frame>  L  A  Y  D  M  K  H  H  F  L  N  L  A  V  S  C  A  S  V  I  C  C  R  V  S  P  K  Q  K  A  L  :  V  T  R  L  V  K  E  G  T  G  K  T  T  L  A  I  G  D  G  A  N  D  V  G  M  I  Q  E  A  D  I  G  V  G  I  S  G  A  E  G  M  Q  :  L  L  A  G  C  D  G  *  *  L  C  Y  C  T  V  S  V  L  G  E  T  S  C  C  T  R  A  L  V  L  Q  K  N  C  S  N   : D  M  L  F  L  L  Q  K  Y  S  F  W  S  H  T  L  L  L  *  G  F  C  G  L  F  G  P  V  C  L  *  *  F  I  H  D  S  V  Q  C  D  S  Y  L  </second_frame>
            <third_frame>   W  R  M  I  *  S  I  I  F  *  I  *  Q  S  A  V  H  L  S  F  A  A  V  S  L  L  S  R  R  P  W :   L  L  G  *  *  R  K  E  L  G  K  P  H  *  Q  L  V  M  V  Q  M  M  L  G  *  S  K  K  R  T  L  E  L  A  L  A  V  Q  K  E  C  S :   F  L  Q  A  V  M  A  S  D  F  A  I  A  Q  F  R  F  L  E  R  L  L  V  V  H  G  H  W  C  Y  K  R  I  A  Q  M  :  I  C  Y  F  F  Y  K  N  I  A  F  G  L  T  L  F  Y  F  E  A  F  A  G  F  S  G  Q  S  V  Y  D  D  S  Y  M  I  L  F  N  V  I  L  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12694" stop="12645"/>
                    <exon start="11792" stop="11684"/>
                    <exon start="11579" stop="11448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKRTLELALAVQKECSFLQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFAGFSGQSVYDDSYMILFNVILTS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12963" stop="12871"/>
                    <exon start="12770" stop="12645"/>
                    <exon start="11792" stop="11769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAYDMKHHFLNLAVSCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGAEGMQLLAGCDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24808" PGL_stop="23712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24808" e_stop="24538"/>
            <exon e_start="24271" e_stop="23712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.526" e_score="0.982"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="24808" e_stop="24538" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.526">
            <gDNA_intron_boundary i_start="24537" i_stop="24272" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="24271" e_stop="23712" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24808" stop="24538"/>
              <exon start="24271" stop="23712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTCCTCAGATTCTGTTGCTCAGTGGAATAGGACCAAAGGCTGAATTGAAAAAATTGAACATCTCGGTGGTGTTTGATAATAAATTTGTCGGTAAAGGCATGTCAGACAACCCCTTGAACACCATATTTGTTCCAACAAATAGGCCTGTTCAGCAGTCACTTATCCAGACTGTAGGAATTACCAAGATGGGGGTCTATATTGAAGCTAGTAGTGGATATGGAGAAACCGAAGATAGCATTCATTGCCATCATGGTATAGTTTCAGCTGAG : ATAGGGCAACTCTCCGCAATTCCTCCAAAGCAGAGAACACTGGAAGCAATTGAAGTCTACAAAAGAAACAAGAAACATGTTCCACAAGAAGCATTCAGGGGAGGTTTCATATTAGAAAAGATCGCGACACCTTTATCAACAGGGCACATTAGCTTGAAGAGCACCAAGGTTGATGACAGTCCTTCCGTCACTTTCAACTACTTCAGCCATCCACGCGACCTGAAGAGATGTGTAGATGGCATACGCATCGTGGAGCAGATTGTGAAATCAAAACATTTCACCACTTACGCACAGTGTGACAAGGATACACTGGACAAGTTGCTAAACATGAGTGTCCAAGCTAACATTAATCTTATACCGAAACACACTAATGATACAGAGTCACTTGAACAGTTCTGCAAAGACACAGTGACTACAATATGGCACTACCATGGCGGTTGCCAAGTAGGCAAGGTGGTAACCCCTGATTACAGGGTTATGAATGTCAACAGGCTCCGGGTCATTGATGGTTCTACATTCAACGAGTCGCCAGGCACCAATCCTCAAGCCACCGTGTTGAT</gDNA_template>
            <first_frame> K  S  S  D  S  V  A  Q  W  N  R  T  K  G  *  I  E  K  I  E  H  L  G  G  V  *  *  *  I  C  R  *  R  H  V  R  Q  P  L  E  H  H  I  C  S  N  K  *  A  C  S  A  V  T  Y  P  D  C  R  N  Y  Q  D  G  G  L  Y  *  S  *  *  W  I  W  R  N  R  R  *  H  S  L  P  S  W  Y  S  F  S  *   : D  R  A  T  L  R  N  S  S  K  A  E  N  T  G  S  N  *  S  L  Q  K  K  Q  E  T  C  S  T  R  S  I  Q  G  R  F  H  I  R  K  D  R  D  T  F  I  N  R  A  H  *  L  E  E  H  Q  G  *  *  Q  S  F  R  H  F  Q  L  L  Q  P  S  T  R  P  E  E  M  C  R  W  H  T  H  R  G  A  D  C  E  I  K  T  F  H  H  L  R  T  V  *  Q  G  Y  T  G  Q  V  A  K  H  E  C  P  S  *  H  *  S  Y  T  E  T  H  *  *  Y  R  V  T  *  T  V  L  Q  R  H  S  D  Y  N  M  A  L  P  W  R  L  P  S  R  Q  G  G  N  P  *  L  Q  G  Y  E  C  Q  Q  A  P  G  H  *  W  F  Y  I  Q  R  V  A  R  H  Q  S  S  S  H  R  V  D </first_frame>
            <second_frame>  S  P  Q  I  L  L  L  S  G  I  G  P  K  A  E  L  K  K  L  N  I  S  V  V  F  D  N  K  F  V  G  K  G  M  S  D  N  P  L  N  T  I  F  V  P  T  N  R  P  V  Q  Q  S  L  I  Q  T  V  G  I  T  K  M  G  V  Y  I  E  A  S  S  G  Y  G  E  T  E  D  S  I  H  C  H  H  G  I  V  S  A  E  :  I  G  Q  L  S  A  I  P  P  K  Q  R  T  L  E  A  I  E  V  Y  K  R  N  K  K  H  V  P  Q  E  A  F  R  G  G  F  I  L  E  K  I  A  T  P  L  S  T  G  H  I  S  L  K  S  T  K  V  D  D  S  P  S  V  T  F  N  Y  F  S  H  P  R  D  L  K  R  C  V  D  G  I  R  I  V  E  Q  I  V  K  S  K  H  F  T  T  Y  A  Q  C  D  K  D  T  L  D  K  L  L  N  M  S  V  Q  A  N  I  N  L  I  P  K  H  T  N  D  T  E  S  L  E  Q  F  C  K  D  T  V  T  T  I  W  H  Y  H  G  G  C  Q  V  G  K  V  V  T  P  D  Y  R  V  M  N  V  N  R  L  R  V  I  D  G  S  T  F  N  E  S  P  G  T  N  P  Q  A  T  V  L   </second_frame>
            <third_frame>   V  L  R  F  C  C  S  V  E  *  D  Q  R  L  N  *  K  N  *  T  S  R  W  C  L  I  I  N  L  S  V  K  A  C  Q  T  T  P  *  T  P  Y  L  F  Q  Q  I  G  L  F  S  S  H  L  S  R  L  *  E  L  P  R  W  G  S  I  L  K  L  V  V  D  M  E  K  P  K  I  A  F  I  A  I  M  V  *  F  Q  L  R :   *  G  N  S  P  Q  F  L  Q  S  R  E  H  W  K  Q  L  K  S  T  K  E  T  R  N  M  F  H  K  K  H  S  G  E  V  S  Y  *  K  R  S  R  H  L  Y  Q  Q  G  T  L  A  *  R  A  P  R  L  M  T  V  L  P  S  L  S  T  T  S  A  I  H  A  T  *  R  D  V  *  M  A  Y  A  S  W  S  R  L  *  N  Q  N  I  S  P  L  T  H  S  V  T  R  I  H  W  T  S  C  *  T  *  V  S  K  L  T  L  I  L  Y  R  N  T  L  M  I  Q  S  H  L  N  S  S  A  K  T  Q  *  L  Q  Y  G  T  T  M  A  V  A  K  *  A  R  W  *  P  L  I  T  G  L  *  M  S  T  G  S  G  S  L  M  V  L  H  S  T  S  R  Q  A  P  I  L  K  P  P  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24807" stop="24538"/>
                    <exon start="24271" stop="23714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPQILLLSGIGPKAELKKLNISVVFDNKFVGKGMSDNPLNTIFVPTNRPVQQSLIQTVGITKMGVYIEASSGYGETEDSIHCHHGIVSAEIGQLSAIPPKQRTLEAIEVYKRNKKHVPQEAFRGGFILEKIATPLSTGHISLKSTKVDDSPSVTFNYFSHPRDLKRCVDGIRIVEQIVKSKHFTTYAQCDKDTLDKLLNMSVQANINLIPKHTNDTESLEQFCKDTVTTIWHYHGGCQVGKVVTPDYRVMNVNRLRVIDGSTFNESPGTNPQATVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35535" PGL_stop="28663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35428" e_stop="35311"/>
            <exon e_start="35236" e_stop="35141"/>
            <exon e_start="35065" e_stop="35017"/>
            <exon e_start="33943" e_stop="33756"/>
            <exon e_start="33654" e_stop="33583"/>
            <exon e_start="33157" e_stop="33008"/>
            <exon e_start="31443" e_stop="31393"/>
            <exon e_start="30086" e_stop="29921"/>
            <exon e_start="29797" e_stop="29664"/>
            <exon e_start="29553" e_stop="29488"/>
            <exon e_start="29212" e_stop="28663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.337" e_score="0.966"/>
          <exon-intron don_prob="0.850" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="0.989"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.748" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="35428" e_stop="35311" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.337">
            <gDNA_intron_boundary i_start="35310" i_stop="35237" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35236" e_stop="35141" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.850" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35140" i_stop="35066" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35065" e_stop="35017" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.971">
            <gDNA_intron_boundary i_start="35016" i_stop="33944" i_length="1073"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="33943" e_stop="33756" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33654" e_stop="33583" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33157" e_stop="33008" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31443" e_stop="31393" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.810" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30086" e_stop="29921" e_length="166"/>
          </exon>
          <intron i_serial="8" don_prob="0.386" acc_prob="0.764">
            <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29664" e_length="134"/>
          </exon>
          <intron i_serial="9" don_prob="0.748" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29663" i_stop="29554" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29553" e_stop="29488" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29487" i_stop="29213" i_length="275"/>
          </intron>
          <exon e_serial="11" e_score="0.993">
            <gDNA_exon_boundary e_start="29212" e_stop="28663" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35428" stop="35311"/>
              <exon start="35236" stop="35141"/>
              <exon start="35065" stop="35017"/>
              <exon start="33943" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33799" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29664"/>
              <exon start="29553" stop="29506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29664"/>
              <exon start="29553" stop="29488"/>
              <exon start="29212" stop="29062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29782" stop="29664"/>
              <exon start="29553" stop="29488"/>
              <exon start="29212" stop="28663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577619" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTTCTACACTGGTTGGCTCACGCACTGGGGAGAGCATATTGCAAATACTGATGCAACTGTTACAGCATCTTACTTAGAAAGGATCTTGTCAAAAAATGGATCAGCTGTGCTCTAC : ATGGCACATGGTGGAACAAATTTCGGGTTCTATAGTGGTGCAAATACTGGTGCAGATGAGACTGATTACAAGCCTGATCTTACATCCTATGATTAT : GATGCACCTATCAAAGAATCTGGAGATATAGACAATCCAAAATATCAAG : CTCTTCGAAGGGTGATTGCTAAATATACTGCAGTTCCTCTTCCTTCAGTTCCTTCCAATACTGAAAAGAAAGCATATGGACTTATTAAGTTGCAGAAGACTAAATCATTGTTTAACATAGTTGATACCACATACTTTGATGGTGTCACTGAATCTGAAAACCCACTTGCAATGGAGTCTTTGGACCAG : ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG : GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG : GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG : GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA : ATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCG : TCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAAGAAGGAAAAAATCTCGTG : GTTATTCTCGAATTAGAGGCTCCGAATGCTGAGTTGTTTGTGGCCTCAGTTGACCATCCAGATTTCACATGTGGTTCTTCCGCAAATTCACGAGTGCATCAAATCTGACATCATCATGACTTAGCCAAATCTGGAATGTTTGATTATCTTCATCTTATTATCTGAATACTGTTCCCGTGCATTGGTTACTAAACAACACGATGAATGTGTACTGAGAACAATGGAAAGGTGCATTTTTTAAGCAAACACCATTGGGCGCTTCACACTCGGTAATATTTATAGTAAATTCCTTGAGATGATGTTGAAGAGATCATAGAACCCCGAGGGAAGAAACATAAAACTTTCTCCTCCTGAAATGTTGGTAGAGATGTTGAAGAGCTCAATTAGTTGAGATGATGTTGAATATATTCACTAGTTTGAGTTAAACATATTGATCGAAGCAGTTTGAGTTCTCCGTCTTTTAGAAATTACTTGTTCTATTTTGTTGATCACCTTTGCTTTATTTAAAATTGTTTGATGAATGATTCTTGACATTCATGTTGAAAAGTCG</gDNA_template>
            <first_frame> G  V  L  H  W  L  A  H  A  L  G  R  A  Y  C  K  Y  *  C  N  C  Y  S  I  L  L  R  K  D  L  V  K  K  W  I  S  C  A  L   : H  G  T  W  W  N  K  F  R  V  L  *  W  C  K  Y  W  C  R  *  D  *  L  Q  A  *  S  Y  I  L  *  L   : *  C  T  Y  Q  R  I  W  R  Y  R  Q  S  K  I  S  S :   S  S  K  G  D  C  *  I  Y  C  S  S  S  S  F  S  S  F  Q  Y  *  K  E  S  I  W  T  Y  *  V  A  E  D  *  I  I  V  *  H  S  *  Y  H  I  L  *  W  C  H  *  I  *  K  P  T  C  N  G  V  F  G  P   : D  V  W  L  H  A  L  C  F  *  L  Q  S  K  S  *  W  R  F  V  I  H  T  K   : G  A  *  Q  G  A  S  I  H  F  M  P  F  R  Q  L  *  R  K  S  R  I  C  R  H  C  S  *  M  V  K  Y  F  H  Q  A  S  S  Y  S  M  Y  F  G  *  Q  N  L  Y  T   : G  G  K  Y  G  A  Y  K  L  W  E  I  H  F  *  Q  E   : G  Y  T  L  S  C  L  F  R  W  *  T  V  A  E  V  E  N  V  A  D  S  F  S  Q  P  K  *  G  S  K  E  *  F  C  Y  F  R  C  I  H  R  P  *  R  I  C  A  D  K  T  *  K  Q  K  K :   L  S  S  S  A  S  F  L  H  W  S  S  Y  S  *  *  S  K  R  H  F  F  V  F  S  W  L  E  *  R  G  C  I  Y  Q  W  I  *  F  R  K  V  L  A   : V  L  W  T  P  V  Q  P  L  C  S  C  S  N  P  A  R  R  K  K  S  R   : G  Y  S  R  I  R  G  S  E  C  *  V  V  C  G  L  S  *  P  S  R  F  H  M  W  F  F  R  K  F  T  S  A  S  N  L  T  S  S  *  L  S  Q  I  W  N  V  *  L  S  S  S  Y  Y  L  N  T  V  P  V  H  W  L  L  N  N  T  M  N  V  Y  *  E  Q  W  K  G  A  F  F  K  Q  T  P  L  G  A  S  H  S  V  I  F  I  V  N  S  L  R  *  C  *  R  D  H  R  T  P  R  E  E  T  *  N  F  L  L  L  K  C  W  *  R  C  *  R  A  Q  L  V  E  M  M  L  N  I  F  T  S  L  S  *  T  Y  *  S  K  Q  F  E  F  S  V  F  *  K  L  L  V  L  F  C  *  S  P  L  L  Y  L  K  L  F  D  E  *  F  L  T  F  M  L  K  S   </first_frame>
            <second_frame>  E  F  Y  T  G  W  L  T  H  W  G  E  H  I  A  N  T  D  A  T  V  T  A  S  Y  L  E  R  I  L  S  K  N  G  S  A  V  L  Y  :  M  A  H  G  G  T  N  F  G  F  Y  S  G  A  N  T  G  A  D  E  T  D  Y  K  P  D  L  T  S  Y  D  Y  :  D  A  P  I  K  E  S  G  D  I  D  N  P  K  Y  Q   : A  L  R  R  V  I  A  K  Y  T  A  V  P  L  P  S  V  P  S  N  T  E  K  K  A  Y  G  L  I  K  L  Q  K  T  K  S  L  F  N  I  V  D  T  T  Y  F  D  G  V  T  E  S  E  N  P  L  A  M  E  S  L  D  Q  :  M  F  G  F  M  L  Y  V  S  D  Y  K  A  K  A  N  G  G  L  L  F  I  P  K  :  V  H  D  R  A  Q  V  F  I  S  C  P  S  D  N  Y  D  E  N  P  E  Y  V  G  T  V  A  R  W  S  N  T  S  I  R  L  P  H  T  Q  C  T  S  D  N  R  I  Y  I  L  :  V  E  N  M  G  R  I  N  Y  G  K  Y  I  F  D  K  K  :  G  I  L  S  P  V  Y  L  D  G  K  P  L  Q  K  W  K  M  L  P  I  P  F  H  N  L  N  E  D  Q  K  N  N  S  V  I  S  D  A  Y  T  D  L  R  E  S  V  Q  I  K  L  K  N  K  R   : N  Y  H  P  V  P  A  F  Y  I  G  H  L  T  V  D  E  V  K  D  T  F  L  S  F  R  G  W  S  K  G  V  V  F  I  N  G  F  N  L  G  R  F  W  P  :  S  F  G  P  Q  C  N  L  Y  V  P  A  P  I  L  Q  E  G  K  N  L  V  :  V  I  L  E  L  E  A  P  N  A  E  L  F  V  A  S  V  D  H  P  D  F  T  C  G  S  S  A  N  S  R  V  H  Q  I  *  H  H  H  D  L  A  K  S  G  M  F  D  Y  L  H  L  I  I  *  I  L  F  P  C  I  G  Y  *  T  T  R  *  M  C  T  E  N  N  G  K  V  H  F  L  S  K  H  H  W  A  L  H  T  R  *  Y  L  *  *  I  P  *  D  D  V  E  E  I  I  E  P  R  G  K  K  H  K  T  F  S  S  *  N  V  G  R  D  V  E  E  L  N  *  L  R  *  C  *  I  Y  S  L  V  *  V  K  H  I  D  R  S  S  L  S  S  P  S  F  R  N  Y  L  F  Y  F  V  D  H  L  C  F  I  *  N  C  L  M  N  D  S  *  H  S  C  *  K  V  </second_frame>
            <third_frame>   S  S  T  L  V  G  S  R  T  G  E  S  I  L  Q  I  L  M  Q  L  L  Q  H  L  T  *  K  G  S  C  Q  K  M  D  Q  L  C  S  T :   W  H  M  V  E  Q  I  S  G  S  I  V  V  Q  I  L  V  Q  M  R  L  I  T  S  L  I  L  H  P  M  I  M :   M  H  L  S  K  N  L  E  I  *  T  I  Q  N  I  K  :  L  F  E  G  *  L  L  N  I  L  Q  F  L  F  L  Q  F  L  P  I  L  K  R  K  H  M  D  L  L  S  C  R  R  L  N  H  C  L  T  *  L  I  P  H  T  L  M  V  S  L  N  L  K  T  H  L  Q  W  S  L  W  T  R :   C  L  A  S  C  F  M  F  L  I  T  K  Q  K  L  M  E  V  C  Y  S  Y  Q  R :   C  M  T  G  R  K  Y  S  F  H  A  L  Q  T  T  M  T  K  I  Q  N  M  *  A  L  *  L  D  G  Q  I  L  P  S  G  F  L  I  L  N  V  L  R  I  T  E  F  I  Y  W :   W  K  I  W  G  V  *  I  M  G  N  T  F  L  T  R  R :   V  Y  S  L  L  F  I  *  M  V  N  R  C  R  S  G  K  C  C  R  F  L  F  T  T  *  M  R  I  K  R  I  I  L  L  F  Q  M  H  T  P  T  L  E  N  L  C  R  *  N  L  K  T  K  E  :  I  I  I  Q  C  Q  L  S  T  L  V  I  L  Q  L  M  K  *  K  T  L  F  C  L  F  V  A  G  V  K  G  L  Y  L  S  M  D  L  I  *  E  G  F  G  R :   P  L  D  P  S  A  T  F  M  F  L  L  Q  S  C  K  K  E  K  I  S  W :   L  F  S  N  *  R  L  R  M  L  S  C  L  W  P  Q  L  T  I  Q  I  S  H  V  V  L  P  Q  I  H  E  C  I  K  S  D  I  I  M  T  *  P  N  L  E  C  L  I  I  F  I  L  L  S  E  Y  C  S  R  A  L  V  T  K  Q  H  D  E  C  V  L  R  T  M  E  R  C  I  F  *  A  N  T  I  G  R  F  T  L  G  N  I  Y  S  K  F  L  E  M  M  L  K  R  S  *  N  P  E  G  R  N  I  K  L  S  P  P  E  M  L  V  E  M  L  K  S  S  I  S  *  D  D  V  E  Y  I  H  *  F  E  L  N  I  L  I  E  A  V  *  V  L  R  L  L  E  I  T  C  S  I  L  L  I  T  F  A  L  F  K  I  V  *  *  M  I  L  D  I  H  V  E  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35427" stop="35311"/>
                    <exon start="35236" stop="35141"/>
                    <exon start="35065" stop="35017"/>
                    <exon start="33943" stop="33756"/>
                    <exon start="33654" stop="33583"/>
                    <exon start="33157" stop="33008"/>
                    <exon start="31443" stop="31393"/>
                    <exon start="30086" stop="29921"/>
                    <exon start="29797" stop="29664"/>
                    <exon start="29553" stop="29488"/>
                    <exon start="29212" stop="29105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFYTGWLTHWGEHIANTDATVTASYLERILSKNGSAVLYMAHGGTNFGFYSGANTGADETDYKPDLTSYDYDAPIKESGDIDNPKYQALRRVIAKYTAVPLPSVPSNTEKKAYGLIKLQKTKSLFNIVDTTYFDGVTESENPLAMESLDQMFGFMLYVSDYKAKANGGLLFIPKVHDRAQVFISCPSDNYDENPEYVGTVARWSNTSIRLPHTQCTSDNRIYILVENMGRINYGKYIFDKKGILSPVYLDGKPLQKWKMLPIPFHNLNEDQKNNSVISDAYTDLRESVQIKLKNKRNYHPVPAFYIGHLTVDEVKDTFLSFRGWSKGVVFINGFNLGRFWPSFGPQCNLYVPAPILQEGKNLVVILELEAPNAELFVASVDHPDFTCGSSANSRVHQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35535" e_stop="35311"/>
            <exon e_start="35236" e_stop="35017"/>
            <exon e_start="33943" e_stop="33756"/>
            <exon e_start="33654" e_stop="33583"/>
            <exon e_start="33157" e_stop="33008"/>
            <exon e_start="31443" e_stop="31393"/>
            <exon e_start="30086" e_stop="29921"/>
            <exon e_start="29797" e_stop="29664"/>
            <exon e_start="29553" e_stop="29488"/>
            <exon e_start="29212" e_stop="28663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.337" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="0.974"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.748" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35535" e_stop="35311" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.337">
            <gDNA_intron_boundary i_start="35310" i_stop="35237" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35236" e_stop="35017" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.971">
            <gDNA_intron_boundary i_start="35016" i_stop="33944" i_length="1073"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="33943" e_stop="33756" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33755" i_stop="33655" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33654" e_stop="33583" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33582" i_stop="33158" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33157" e_stop="33008" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33007" i_stop="31444" i_length="1564"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31443" e_stop="31393" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.810" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31392" i_stop="30087" i_length="1306"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30086" e_stop="29921" e_length="166"/>
          </exon>
          <intron i_serial="7" don_prob="0.386" acc_prob="0.764">
            <gDNA_intron_boundary i_start="29920" i_stop="29798" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29664" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.748" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29663" i_stop="29554" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29553" e_stop="29488" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.944" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29487" i_stop="29213" i_length="275"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="29212" e_stop="28663" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35535" stop="35311"/>
              <exon start="35236" stop="35017"/>
              <exon start="33943" stop="33789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33799" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29664"/>
              <exon start="29553" stop="29506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33756"/>
              <exon start="33654" stop="33583"/>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33157" stop="33008"/>
              <exon start="31443" stop="31393"/>
              <exon start="30086" stop="29921"/>
              <exon start="29797" stop="29664"/>
              <exon start="29553" stop="29488"/>
              <exon start="29212" stop="29062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29782" stop="29664"/>
              <exon start="29553" stop="29488"/>
              <exon start="29212" stop="28663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577619" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCACCAGGGAAATCACCACCGCTTTCAACGTTAGTGTCTTTTTGTTTATTCCTTTTCTATCTCTCATCAGATGCTACTAATGATGTTGATAAGTTTGGTTTCTAGGGAGTTCTACACTGGTTGGCTCACGCACTGGGGAGAGCATATTGCAAATACTGATGCAACTGTTACAGCATCTTACTTAGAAAGGATCTTGTCAAAAAATGGATCAGCTGTGCTCTAC : ATGGCACATGGTGGAACAAATTTCGGGTTCTATAGTGGTGCAAATACTGGTGCAGATGAGACTGATTACAAGCCTGATCTTACATCCTATGATTATGTGAGGAAGTTCCCAATATTTTTCTGTTAAAGTTTGTTGCTCTATCATAATCAAACTGAAAACCATCTTGTTCAGGATGCACCTATCAAAGAATCTGGAGATATAGACAATCCAAAATATCAAG : CTCTTCGAAGGGTGATTGCTAAATATACTGCAGTTCCTCTTCCTTCAGTTCCTTCCAATACTGAAAAGAAAGCATATGGACTTATTAAGTTGCAGAAGACTAAATCATTGTTTAACATAGTTGATACCACATACTTTGATGGTGTCACTGAATCTGAAAACCCACTTGCAATGGAGTCTTTGGACCAG : ATGTTTGGCTTCATGCTTTATGTTTCTGATTACAAAGCAAAAGCTAATGGAGGTTTGTTATTCATACCAAAG : GTGCATGACAGGGCGCAAGTATTCATTTCATGCCCTTCAGACAACTATGACGAAAATCCAGAATATGTAGGCACTGTAGCTAGATGGTCAAATACTTCCATCAGGCTTCCTCATACTCAATGTACTTCGGATAACAGAATTTATATACTG : GTGGAAAATATGGGGCGTATAAATTATGGGAAATACATTTTTGACAAGAAG : GGTATACTCTCTCCTGTTTATTTAGATGGTAAACCGTTGCAGAAGTGGAAAATGTTGCCGATTCCTTTTCACAACCTAAATGAGGATCAAAAGAATAATTCTGTTATTTCAGATGCATACACCGACCTTAGAGAATCTGTGCAGATAAAACTTAAAAACAAAAGAA : ATTATCATCCAGTGCCAGCTTTCTACATTGGTCATCTTACAGTTGATGAAGTAAAAGACACTTTTTTGTCTTTTCGTGGCTGGAGTAAAGGGGTTGTATTTATCAATGGATTTAATTTAGGAAGGTTTTGGCCG : TCCTTTGGACCCCAGTGCAACCTTTATGTTCCTGCTCCAATCCTGCAAGAAGGAAAAAATCTCGTG : GTTATTCTCGAATTAGAGGCTCCGAATGCTGAGTTGTTTGTGGCCTCAGTTGACCATCCAGATTTCACATGTGGTTCTTCCGCAAATTCACGAGTGCATCAAATCTGACATCATCATGACTTAGCCAAATCTGGAATGTTTGATTATCTTCATCTTATTATCTGAATACTGTTCCCGTGCATTGGTTACTAAACAACACGATGAATGTGTACTGAGAACAATGGAAAGGTGCATTTTTTAAGCAAACACCATTGGGCGCTTCACACTCGGTAATATTTATAGTAAATTCCTTGAGATGATGTTGAAGAGATCATAGAACCCCGAGGGAAGAAACATAAAACTTTCTCCTCCTGAAATGTTGGTAGAGATGTTGAAGAGCTCAATTAGTTGAGATGATGTTGAATATATTCACTAGTTTGAGTTAAACATATTGATCGAAGCAGTTTGAGTTCTCCGTCTTTTAGAAATTACTTGTTCTATTTTGTTGATCACCTTTGCTTTATTTAAAATTGTTTGATGAATGATTCTTGACATTCATGTTGAAAAGTCG</gDNA_template>
            <first_frame> M  H  Q  G  N  H  H  R  F  Q  R  *  C  L  F  V  Y  S  F  S  I  S  H  Q  M  L  L  M  M  L  I  S  L  V  S  R  E  F  Y  T  G  W  L  T  H  W  G  E  H  I  A  N  T  D  A  T  V  T  A  S  Y  L  E  R  I  L  S  K  N  G  S  A  V  L  Y  :  M  A  H  G  G  T  N  F  G  F  Y  S  G  A  N  T  G  A  D  E  T  D  Y  K  P  D  L  T  S  Y  D  Y  V  R  K  F  P  I  F  F  C  *  S  L  L  L  Y  H  N  Q  T  E  N  H  L  V  Q  D  A  P  I  K  E  S  G  D  I  D  N  P  K  Y  Q   : A  L  R  R  V  I  A  K  Y  T  A  V  P  L  P  S  V  P  S  N  T  E  K  K  A  Y  G  L  I  K  L  Q  K  T  K  S  L  F  N  I  V  D  T  T  Y  F  D  G  V  T  E  S  E  N  P  L  A  M  E  S  L  D  Q  :  M  F  G  F  M  L  Y  V  S  D  Y  K  A  K  A  N  G  G  L  L  F  I  P  K  :  V  H  D  R  A  Q  V  F  I  S  C  P  S  D  N  Y  D  E  N  P  E  Y  V  G  T  V  A  R  W  S  N  T  S  I  R  L  P  H  T  Q  C  T  S  D  N  R  I  Y  I  L  :  V  E  N  M  G  R  I  N  Y  G  K  Y  I  F  D  K  K  :  G  I  L  S  P  V  Y  L  D  G  K  P  L  Q  K  W  K  M  L  P  I  P  F  H  N  L  N  E  D  Q  K  N  N  S  V  I  S  D  A  Y  T  D  L  R  E  S  V  Q  I  K  L  K  N  K  R   : N  Y  H  P  V  P  A  F  Y  I  G  H  L  T  V  D  E  V  K  D  T  F  L  S  F  R  G  W  S  K  G  V  V  F  I  N  G  F  N  L  G  R  F  W  P  :  S  F  G  P  Q  C  N  L  Y  V  P  A  P  I  L  Q  E  G  K  N  L  V  :  V  I  L  E  L  E  A  P  N  A  E  L  F  V  A  S  V  D  H  P  D  F  T  C  G  S  S  A  N  S  R  V  H  Q  I  *  H  H  H  D  L  A  K  S  G  M  F  D  Y  L  H  L  I  I  *  I  L  F  P  C  I  G  Y  *  T  T  R  *  M  C  T  E  N  N  G  K  V  H  F  L  S  K  H  H  W  A  L  H  T  R  *  Y  L  *  *  I  P  *  D  D  V  E  E  I  I  E  P  R  G  K  K  H  K  T  F  S  S  *  N  V  G  R  D  V  E  E  L  N  *  L  R  *  C  *  I  Y  S  L  V  *  V  K  H  I  D  R  S  S  L  S  S  P  S  F  R  N  Y  L  F  Y  F  V  D  H  L  C  F  I  *  N  C  L  M  N  D  S  *  H  S  C  *  K  V  </first_frame>
            <second_frame>  C  T  R  E  I  T  T  A  F  N  V  S  V  F  L  F  I  P  F  L  S  L  I  R  C  Y  *  *  C  *  *  V  W  F  L  G  S  S  T  L  V  G  S  R  T  G  E  S  I  L  Q  I  L  M  Q  L  L  Q  H  L  T  *  K  G  S  C  Q  K  M  D  Q  L  C  S  T :   W  H  M  V  E  Q  I  S  G  S  I  V  V  Q  I  L  V  Q  M  R  L  I  T  S  L  I  L  H  P  M  I  M  *  G  S  S  Q  Y  F  S  V  K  V  C  C  S  I  I  I  K  L  K  T  I  L  F  R  M  H  L  S  K  N  L  E  I  *  T  I  Q  N  I  K  :  L  F  E  G  *  L  L  N  I  L  Q  F  L  F  L  Q  F  L  P  I  L  K  R  K  H  M  D  L  L  S  C  R  R  L  N  H  C  L  T  *  L  I  P  H  T  L  M  V  S  L  N  L  K  T  H  L  Q  W  S  L  W  T  R :   C  L  A  S  C  F  M  F  L  I  T  K  Q  K  L  M  E  V  C  Y  S  Y  Q  R :   C  M  T  G  R  K  Y  S  F  H  A  L  Q  T  T  M  T  K  I  Q  N  M  *  A  L  *  L  D  G  Q  I  L  P  S  G  F  L  I  L  N  V  L  R  I  T  E  F  I  Y  W :   W  K  I  W  G  V  *  I  M  G  N  T  F  L  T  R  R :   V  Y  S  L  L  F  I  *  M  V  N  R  C  R  S  G  K  C  C  R  F  L  F  T  T  *  M  R  I  K  R  I  I  L  L  F  Q  M  H  T  P  T  L  E  N  L  C  R  *  N  L  K  T  K  E  :  I  I  I  Q  C  Q  L  S  T  L  V  I  L  Q  L  M  K  *  K  T  L  F  C  L  F  V  A  G  V  K  G  L  Y  L  S  M  D  L  I  *  E  G  F  G  R :   P  L  D  P  S  A  T  F  M  F  L  L  Q  S  C  K  K  E  K  I  S  W :   L  F  S  N  *  R  L  R  M  L  S  C  L  W  P  Q  L  T  I  Q  I  S  H  V  V  L  P  Q  I  H  E  C  I  K  S  D  I  I  M  T  *  P  N  L  E  C  L  I  I  F  I  L  L  S  E  Y  C  S  R  A  L  V  T  K  Q  H  D  E  C  V  L  R  T  M  E  R  C  I  F  *  A  N  T  I  G  R  F  T  L  G  N  I  Y  S  K  F  L  E  M  M  L  K  R  S  *  N  P  E  G  R  N  I  K  L  S  P  P  E  M  L  V  E  M  L  K  S  S  I  S  *  D  D  V  E  Y  I  H  *  F  E  L  N  I  L  I  E  A  V  *  V  L  R  L  L  E  I  T  C  S  I  L  L  I  T  F  A  L  F  K  I  V  *  *  M  I  L  D  I  H  V  E  K  S </second_frame>
            <third_frame>   A  P  G  K  S  P  P  L  S  T  L  V  S  F  C  L  F  L  F  Y  L  S  S  D  A  T  N  D  V  D  K  F  G  F  *  G  V  L  H  W  L  A  H  A  L  G  R  A  Y  C  K  Y  *  C  N  C  Y  S  I  L  L  R  K  D  L  V  K  K  W  I  S  C  A  L   : H  G  T  W  W  N  K  F  R  V  L  *  W  C  K  Y  W  C  R  *  D  *  L  Q  A  *  S  Y  I  L  *  L  C  E  E  V  P  N  I  F  L  L  K  F  V  A  L  S  *  S  N  *  K  P  S  C  S  G  C  T  Y  Q  R  I  W  R  Y  R  Q  S  K  I  S  S :   S  S  K  G  D  C  *  I  Y  C  S  S  S  S  F  S  S  F  Q  Y  *  K  E  S  I  W  T  Y  *  V  A  E  D  *  I  I  V  *  H  S  *  Y  H  I  L  *  W  C  H  *  I  *  K  P  T  C  N  G  V  F  G  P   : D  V  W  L  H  A  L  C  F  *  L  Q  S  K  S  *  W  R  F  V  I  H  T  K   : G  A  *  Q  G  A  S  I  H  F  M  P  F  R  Q  L  *  R  K  S  R  I  C  R  H  C  S  *  M  V  K  Y  F  H  Q  A  S  S  Y  S  M  Y  F  G  *  Q  N  L  Y  T   : G  G  K  Y  G  A  Y  K  L  W  E  I  H  F  *  Q  E   : G  Y  T  L  S  C  L  F  R  W  *  T  V  A  E  V  E  N  V  A  D  S  F  S  Q  P  K  *  G  S  K  E  *  F  C  Y  F  R  C  I  H  R  P  *  R  I  C  A  D  K  T  *  K  Q  K  K :   L  S  S  S  A  S  F  L  H  W  S  S  Y  S  *  *  S  K  R  H  F  F  V  F  S  W  L  E  *  R  G  C  I  Y  Q  W  I  *  F  R  K  V  L  A   : V  L  W  T  P  V  Q  P  L  C  S  C  S  N  P  A  R  R  K  K  S  R   : G  Y  S  R  I  R  G  S  E  C  *  V  V  C  G  L  S  *  P  S  R  F  H  M  W  F  F  R  K  F  T  S  A  S  N  L  T  S  S  *  L  S  Q  I  W  N  V  *  L  S  S  S  Y  Y  L  N  T  V  P  V  H  W  L  L  N  N  T  M  N  V  Y  *  E  Q  W  K  G  A  F  F  K  Q  T  P  L  G  A  S  H  S  V  I  F  I  V  N  S  L  R  *  C  *  R  D  H  R  T  P  R  E  E  T  *  N  F  L  L  L  K  C  W  *  R  C  *  R  A  Q  L  V  E  M  M  L  N  I  F  T  S  L  S  *  T  Y  *  S  K  Q  F  E  F  S  V  F  *  K  L  L  V  L  F  C  *  S  P  L  L  Y  L  K  L  F  D  E  *  F  L  T  F  M  L  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35110" stop="35017"/>
                    <exon start="33943" stop="33756"/>
                    <exon start="33654" stop="33583"/>
                    <exon start="33157" stop="33008"/>
                    <exon start="31443" stop="31393"/>
                    <exon start="30086" stop="29921"/>
                    <exon start="29797" stop="29664"/>
                    <exon start="29553" stop="29488"/>
                    <exon start="29212" stop="29105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLLYHNQTENHLVQDAPIKESGDIDNPKYQALRRVIAKYTAVPLPSVPSNTEKKAYGLIKLQKTKSLFNIVDTTYFDGVTESENPLAMESLDQMFGFMLYVSDYKAKANGGLLFIPKVHDRAQVFISCPSDNYDENPEYVGTVARWSNTSIRLPHTQCTSDNRIYILVENMGRINYGKYIFDKKGILSPVYLDGKPLQKWKMLPIPFHNLNEDQKNNSVISDAYTDLRESVQIKLKNKRNYHPVPAFYIGHLTVDEVKDTFLSFRGWSKGVVFINGFNLGRFWPSFGPQCNLYVPAPILQEGKNLVVILELEAPNAELFVASVDHPDFTCGSSANSRVHQI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35499" stop="35311"/>
                    <exon start="35236" stop="35111"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLFVYSFSISHQMLLMMLISLVSREFYTGWLTHWGEHIANTDATVTASYLERILSKNGSAVLYMAHGGTNFGFYSGANTGADETDYKPDLTSYDYVRKFPIFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="39129" PGL_stop="38683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39129" e_stop="38683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39129" e_stop="38683" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39129" stop="38683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACAAACATTATCTCTTTATCAGGGTAAGACTCATTCCGATTCTTGATTTGATCAATGTTGGGCCTCGGTATTATATTCTCCACATTTTAGTTGCCAGACTGGCATATGAGGGTGTTGGATATCCCAGATTTGGGGGATGGGATGGGATGCTTTGGTTTAGTTATAAGGTCTTAGAAATCCTCTAGATTTTGGAAGTTGAGTTAGTTCAAGTTTCATTTGTCGTTCTTTATCTTGATATATGTTGCTTGGACTCTTCAAAATTGTCATAAGTTCATGTTGGATTCTCCGTAAGTACTGTATGTTTTAAGAATCCGACACGGGTGCGGCATTGAAACTAAAAAATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> R  H  K  H  Y  L  F  I  R  V  R  L  I  P  I  L  D  L  I  N  V  G  P  R  Y  Y  I  L  H  I  L  V  A  R  L  A  Y  E  G  V  G  Y  P  R  F  G  G  W  D  G  M  L  W  F  S  Y  K  V  L  E  I  L  *  I  L  E  V  E  L  V  Q  V  S  F  V  V  L  Y  L  D  I  C  C  L  D  S  S  K  L  S  *  V  H  V  G  F  S  V  S  T  V  C  F  K  N  P  T  R  V  R  H  *  N  *  K  I  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  D  T  N  I  I  S  L  S  G  *  D  S  F  R  F  L  I  *  S  M  L  G  L  G  I  I  F  S  T  F  *  L  P  D  W  H  M  R  V  L  D  I  P  D  L  G  D  G  M  G  C  F  G  L  V  I  R  S  *  K  S  S  R  F  W  K  L  S  *  F  K  F  H  L  S  F  F  I  L  I  Y  V  A  W  T  L  Q  N  C  H  K  F  M  L  D  S  P  *  V  L  Y  V  L  R  I  R  H  G  C  G  I  E  T  K  K  S  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   T  Q  T  L  S  L  Y  Q  G  K  T  H  S  D  S  *  F  D  Q  C  W  A  S  V  L  Y  S  P  H  F  S  C  Q  T  G  I  *  G  C  W  I  S  Q  I  W  G  M  G  W  D  A  L  V  *  L  *  G  L  R  N  P  L  D  F  G  S  *  V  S  S  S  F  I  C  R  S  L  S  *  Y  M  L  L  G  L  F  K  I  V  I  S  S  C  W  I  L  R  K  Y  C  M  F  *  E  S  D  T  G  A  A  L  K  L  K  N  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0103P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44030" PGL_stop="40478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44030" e_stop="43663"/>
            <exon e_start="41637" e_stop="41541"/>
            <exon e_start="41103" e_stop="40710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.717" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44030" e_stop="43663" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41637" e_stop="41541" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.717">
            <gDNA_intron_boundary i_start="41540" i_stop="41104" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="41103" e_stop="40710" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44030" stop="43756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44013" stop="43663"/>
              <exon start="41637" stop="41541"/>
              <exon start="41103" stop="40710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44001" stop="43663"/>
              <exon start="41637" stop="41541"/>
              <exon start="41103" stop="40801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43988" stop="43663"/>
              <exon start="41637" stop="41541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43983" stop="43663"/>
              <exon start="41637" stop="41541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43968" stop="43663"/>
              <exon start="41637" stop="41541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTCGAAGGAAAAATGGTGGAAACTGGAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG : TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG : CAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGAGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTAAAGATATGTTTTGATCTGTAATAAGGAATTCATCTTTACTGTACCTAAGGGTCCTTGAGATTGACGTATGAGCAAAATCTATATTTTGAAG</gDNA_template>
            <first_frame> C  F  R  R  K  N  G  G  N  W  K  N  L  E  K  *  I  L  C  *  G  L  A  S  F  C  V  S  T  V  C  E  N  V  V  V  V  E  N  F  N  S  D  G  R  F  S  D  *  P  F  D  D  P  K  L  E  M  F  S  T  N  A  T  N  C  E  S  D  T  H  F  Q  A  F  S  I  S  L  L  S  L  S  V  S  D  S  S  *  F  T  P  V  R  R  H  *  F  V  Q  E  G  F  H  *  R  F  L  I  P  Y  R  T  S  F  T  A  L  F  P  P  *  R :   *  *  F  F  I  E  W  D  A  F  V  S  *  E  N  L  P  T  Q  Q  H  E  A  Q  K  D  T  W  L  L  C  S  :  Q  S  N  *  G  W  A  *  S  Y  C  S  T  Y  C  K  G  S  I  K  N  N  S  I  T  T  F  F  V  A  W  F  T  R  C  T  E  Q  G  *  K  A  G  L  G  H  F  S  A  S  *  I  G  Y  V  A  T  I  E  N  N  G  I  R  R  *  C  F  D  D  P  Q  T  G  F  L  Y  L  G  S  Y  F  P  A  L  S  P  N  S  S  *  Y  F  S  K  L  V  L  F  P  L  K  I  C  F  D  L  *  *  G  I  H  L  Y  C  T  *  G  S  L  R  L  T  Y  E  Q  N  L  Y  F  E  </first_frame>
            <second_frame>  V  F  E  G  K  M  V  E  T  G  R  T  W  R  S  R  Y  C  V  R  V  *  L  P  S  V  Y  Q  L  C  V  K  M  S  S  S  S  K  T  L  I  R  T  G  V  S  L  I  S  R  L  M  T  Q  N  L  R  C  S  A  Q  T  P  Q  I  A  N  P  T  L  T  S  R  L  F  P  S  L  S  S  H  S  Q  S  P  I  R  L  D  L  P  Q  F  D  D  I  D  S  F  K  K  V  S  T  E  G  F  L  Y  P  T  G  L  P  S  L  P  F  F  L  P  D   : V  D  D  S  S  S  S  G  M  L  L  F  P  K  R  T  Y  Q  P  S  N  M  R  R  K  R  T  H  G  Y  F  A  R :   K  A  T  K  G  G  R  R  V  I  A  R  R  I  A  K  G  R  S  R  I  T  A  *  Q  H  F  L  L  H  G  L  Q  G  V  R  S  K  A  R  R  L  V  *  G  I  S  R  P  V  K  *  V  M  L  Q  R  L  K  T  M  G  S  G  G  D  V  L  M  I  L  K  L  D  F  C  T  *  A  L  T  S  Q  L  C  P  Q  T  L  L  N  I  F  P  S  W  F  Y  F  P  *  R  Y  V  L  I  C  N  K  E  F  I  F  T  V  P  K  G  P  *  D  *  R  M  S  K  I  Y  I  L  K </second_frame>
            <third_frame>   F  S  K  E  K  W  W  K  L  E  E  L  G  E  V  D  T  V  L  G  F  S  F  L  L  C  I  N  C  V  *  K  C  R  R  R  R  K  L  *  F  G  R  A  F  L  *  L  A  V  *  *  P  K  T  *  D  V  Q  H  K  R  H  K  L  R  I  R  H  S  L  P  G  F  F  H  L  S  P  L  T  L  S  L  R  F  V  L  I  Y  P  S  S  T  T  L  I  R  S  R  R  F  P  L  K  V  S  Y  T  L  Q  D  F  L  H  C  P  F  S  S  L  T  :  L  M  I  L  H  R  V  G  C  F  C  F  L  R  E  P  T  N  P  A  T  *  G  A  K  G  H  M  V  T  L  L   : A  K  Q  L  R  V  G  V  E  L  L  L  D  V  L  Q  R  V  D  Q  E  *  Q  H  N  N  I  F  C  C  M  V  Y  K  V  Y  G  A  R  L  E  G  W  F  R  A  F  L  G  Q  L  N  R  L  C  C  N  D  *  K  Q  W  D  Q  E  V  M  F  *  *  S  S  N  W  I  F  V  L  R  L  L  L  P  S  F  V  P  K  L  F  L  I  F  F  Q  A  G  F  I  S  L  K  D  M  F  *  S  V  I  R  N  S  S  L  L  Y  L  R  V  L  E  I  D  V  *  A  K  S  I  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43963" stop="43663"/>
                    <exon start="41637" stop="41541"/>
                    <exon start="41103" stop="41031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSVYQLCVKMSSSSKTLIRTGVSLISRLMTQNLRCSAQTPQIANPTLTSRLFPSLSSHSQSPIRLDLPQFDDIDSFKKVSTEGFLYPTGLPSLPFFLPDVDDSSSSGMLLFPKRTYQPSNMRRKRTHGYFARKATKGGRRVIARRIAKGRSRITA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44030" e_stop="43663"/>
            <exon e_start="41637" e_stop="41541"/>
            <exon e_start="41103" e_stop="40711"/>
            <exon e_start="40490" e_stop="40478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.493" e_score="1.000"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44030" e_stop="43663" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="43662" i_stop="41638" i_length="2025"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41637" e_stop="41541" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.717">
            <gDNA_intron_boundary i_start="41540" i_stop="41104" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41103" e_stop="40711" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.493">
            <gDNA_intron_boundary i_start="40710" i_stop="40491" i_length="220"/>
          </intron>
          <exon e_serial="4" e_score="0.692">
            <gDNA_exon_boundary e_start="40490" e_stop="40478" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44030" stop="43756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44001" stop="43663"/>
              <exon start="41637" stop="41541"/>
              <exon start="41103" stop="40801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43988" stop="43663"/>
              <exon start="41637" stop="41541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43983" stop="43663"/>
              <exon start="41637" stop="41541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43968" stop="43663"/>
              <exon start="41637" stop="41541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43893" stop="43663"/>
              <exon start="41637" stop="41541"/>
              <exon start="41103" stop="40711"/>
              <exon start="40490" stop="40478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTCGAAGGAAAAATGGTGGAAACTGGAAGAACTTGGAGAAGTAGATACTGTGTTAGGGTTTAGCTTCCTTCTGTGTATCAACTGTGTGTGAAAATGTCGTCGTCGTCGAAAACTTTAATTCGGACGGGCGTTTCTCTGATTAGCCGTTTGATGACCCAAAACTTGAGATGTTCAGCACAAACGCCACAAATTGCGAATCCGACACTCACTTCCAGGCTTTTTCCATCTCTCTCCTCTCACTCTCAGTCTCCGATTCGTCTTGATTTACCCCAGTTCGACGACATTGATTCGTTCAAGAAGGTTTCCACTGAAGGTTTCTTATACCCTACAGGACTTCCTTCACTGCCCTTTTTCCTCCCTGACG : TTGATGATTCTTCATCGAGTGGGATGCTTTTGTTTCCTAAGAGAACCTACCAACCCAGCAACATGAGGCGCAAAAGGACACATGGTTACTTTGCTCG : CAAAGCAACTAAGGGTGGGCGTAGAGTTATTGCTCGACGTATTGCAAAGGGTCGATCAAGAATAACAGCATAACAACATTTTTTGTTGCATGGTTTACAAGGTGTACGGAGCAAGGCTAGAAGGCTGGTTTAGGGCATTTCTCGGCCAGTTAAATAGGTTATGTTGCAACGATTGAAAACAATGGGATCAGGAGGTGATGTTTTGATGATCCTCAAACTGGATTTTTGTACTTAGGCTCTTACTTCCCAGCTTTGTCCCCAAACTCTTCTTAATATTTTTCCAAGCTGGTTTTATTTCCCTTAAAGATATGTTTTGATCTGTAATAAGGAATTCATCTTTACTGTACCTAAGGGTCCTTGAGATTGACGTATGAGCAAAATCTATATTTTGAA : TTAAGAAGAAAAA</gDNA_template>
            <first_frame> C  F  R  R  K  N  G  G  N  W  K  N  L  E  K  *  I  L  C  *  G  L  A  S  F  C  V  S  T  V  C  E  N  V  V  V  V  E  N  F  N  S  D  G  R  F  S  D  *  P  F  D  D  P  K  L  E  M  F  S  T  N  A  T  N  C  E  S  D  T  H  F  Q  A  F  S  I  S  L  L  S  L  S  V  S  D  S  S  *  F  T  P  V  R  R  H  *  F  V  Q  E  G  F  H  *  R  F  L  I  P  Y  R  T  S  F  T  A  L  F  P  P  *  R :   *  *  F  F  I  E  W  D  A  F  V  S  *  E  N  L  P  T  Q  Q  H  E  A  Q  K  D  T  W  L  L  C  S  :  Q  S  N  *  G  W  A  *  S  Y  C  S  T  Y  C  K  G  S  I  K  N  N  S  I  T  T  F  F  V  A  W  F  T  R  C  T  E  Q  G  *  K  A  G  L  G  H  F  S  A  S  *  I  G  Y  V  A  T  I  E  N  N  G  I  R  R  *  C  F  D  D  P  Q  T  G  F  L  Y  L  G  S  Y  F  P  A  L  S  P  N  S  S  *  Y  F  S  K  L  V  L  F  P  L  K  I  C  F  D  L  *  *  G  I  H  L  Y  C  T  *  G  S  L  R  L  T  Y  E  Q  N  L  Y  F  E  :  L  R  R  K  </first_frame>
            <second_frame>  V  F  E  G  K  M  V  E  T  G  R  T  W  R  S  R  Y  C  V  R  V  *  L  P  S  V  Y  Q  L  C  V  K  M  S  S  S  S  K  T  L  I  R  T  G  V  S  L  I  S  R  L  M  T  Q  N  L  R  C  S  A  Q  T  P  Q  I  A  N  P  T  L  T  S  R  L  F  P  S  L  S  S  H  S  Q  S  P  I  R  L  D  L  P  Q  F  D  D  I  D  S  F  K  K  V  S  T  E  G  F  L  Y  P  T  G  L  P  S  L  P  F  F  L  P  D   : V  D  D  S  S  S  S  G  M  L  L  F  P  K  R  T  Y  Q  P  S  N  M  R  R  K  R  T  H  G  Y  F  A  R :   K  A  T  K  G  G  R  R  V  I  A  R  R  I  A  K  G  R  S  R  I  T  A  *  Q  H  F  L  L  H  G  L  Q  G  V  R  S  K  A  R  R  L  V  *  G  I  S  R  P  V  K  *  V  M  L  Q  R  L  K  T  M  G  S  G  G  D  V  L  M  I  L  K  L  D  F  C  T  *  A  L  T  S  Q  L  C  P  Q  T  L  L  N  I  F  P  S  W  F  Y  F  P  *  R  Y  V  L  I  C  N  K  E  F  I  F  T  V  P  K  G  P  *  D  *  R  M  S  K  I  Y  I  L  N :   *  E  E  K </second_frame>
            <third_frame>   F  S  K  E  K  W  W  K  L  E  E  L  G  E  V  D  T  V  L  G  F  S  F  L  L  C  I  N  C  V  *  K  C  R  R  R  R  K  L  *  F  G  R  A  F  L  *  L  A  V  *  *  P  K  T  *  D  V  Q  H  K  R  H  K  L  R  I  R  H  S  L  P  G  F  F  H  L  S  P  L  T  L  S  L  R  F  V  L  I  Y  P  S  S  T  T  L  I  R  S  R  R  F  P  L  K  V  S  Y  T  L  Q  D  F  L  H  C  P  F  S  S  L  T  :  L  M  I  L  H  R  V  G  C  F  C  F  L  R  E  P  T  N  P  A  T  *  G  A  K  G  H  M  V  T  L  L   : A  K  Q  L  R  V  G  V  E  L  L  L  D  V  L  Q  R  V  D  Q  E  *  Q  H  N  N  I  F  C  C  M  V  Y  K  V  Y  G  A  R  L  E  G  W  F  R  A  F  L  G  Q  L  N  R  L  C  C  N  D  *  K  Q  W  D  Q  E  V  M  F  *  *  S  S  N  W  I  F  V  L  R  L  L  L  P  S  F  V  P  K  L  F  L  I  F  F  Q  A  G  F  I  S  L  K  D  M  F  *  S  V  I  R  N  S  S  L  L  Y  L  R  V  L  E  I  D  V  *  A  K  S  I  F  *   : I  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43963" stop="43663"/>
                    <exon start="41637" stop="41541"/>
                    <exon start="41103" stop="41031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSVYQLCVKMSSSSKTLIRTGVSLISRLMTQNLRCSAQTPQIANPTLTSRLFPSLSSHSQSPIRLDLPQFDDIDSFKKVSTEGFLYPTGLPSLPFFLPDVDDSSSSGMLLFPKRTYQPSNMRRKRTHGYFARKATKGGRRVIARRIAKGRSRITA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="50445" PGL_stop="49543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50445" e_stop="50263"/>
            <exon e_start="50167" e_stop="50127"/>
            <exon e_start="50040" e_stop="49895"/>
            <exon e_start="49802" e_stop="49730"/>
            <exon e_start="49657" e_stop="49543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.782" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50445" e_stop="50263" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="50262" i_stop="50168" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50167" e_stop="50127" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50126" i_stop="50041" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50040" e_stop="49895" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.782">
            <gDNA_intron_boundary i_start="49894" i_stop="49803" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49802" e_stop="49730" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49729" i_stop="49658" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="49657" e_stop="49543" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50445" stop="50263"/>
              <exon start="50167" stop="50127"/>
              <exon start="50040" stop="49895"/>
              <exon start="49802" stop="49730"/>
              <exon start="49657" stop="49543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATCTCATTCGGCGGCAATTTTCAAATTTTAGCACACAAAGCTAGGGTTTAACGCAATCACAAATAACTCAGTATTTGATTCTCGTGCTGAAATCCGTCTAGGTTTTGTTGCGATTCATTATCTCTTTCGATCAGTTGGAAAGGATATGGCTGATAGGGAAGCCCCTGGTTCTTCAGCAAG : ATCACTTTTTATTGGAGGCATTTCTATGGATATAACCGAAG : AATCATTGAGGGCTCATTTCAGTCAGTTTGGAGAGATAGCTGATTTAGTACTAAAGCGTGATAAAGGTTTTGGATTTGTTACATATGCTAACCCGGAAACTGTAGATGAAGTTTTAAACACATACCATAACATAGCTAGTAAAGAG : GTGGATGTGAAGATACCGGTAACTTATAGACAGAGAATTCATGTTGGTGAACTTCCGTTGTCTTTAACCGAAG : TTTCAGGTGAGTTGAAGGAATATTTTTCGTCTTATGGCAATGTTGTGGGAAATCAGATCGTTTTGGATAAAACAACTGGCCGCTCCAGAGGCTTTGCCTTTGTGAGTTTTGATAC</gDNA_template>
            <first_frame> *  I  S  F  G  G  N  F  Q  I  L  A  H  K  A  R  V  *  R  N  H  K  *  L  S  I  *  F  S  C  *  N  P  S  R  F  C  C  D  S  L  S  L  S  I  S  W  K  G  Y  G  *  *  G  S  P  W  F  F  S  K  :  I  T  F  Y  W  R  H  F  Y  G  Y  N  R  R :   I  I  E  G  S  F  Q  S  V  W  R  D  S  *  F  S  T  K  A  *  *  R  F  W  I  C  Y  I  C  *  P  G  N  C  R  *  S  F  K  H  I  P  *  H  S  *  *  R   : G  G  C  E  D  T  G  N  L  *  T  E  N  S  C  W  *  T  S  V  V  F  N  R  S :   F  R  *  V  E  G  I  F  F  V  L  W  Q  C  C  G  K  S  D  R  F  G  *  N  N  W  P  L  Q  R  L  C  L  C  E  F  *  Y </first_frame>
            <second_frame>  K  S  H  S  A  A  I  F  K  F  *  H  T  K  L  G  F  N  A  I  T  N  N  S  V  F  D  S  R  A  E  I  R  L  G  F  V  A  I  H  Y  L  F  R  S  V  G  K  D  M  A  D  R  E  A  P  G  S  S  A  R :   S  L  F  I  G  G  I  S  M  D  I  T  E   : E  S  L  R  A  H  F  S  Q  F  G  E  I  A  D  L  V  L  K  R  D  K  G  F  G  F  V  T  Y  A  N  P  E  T  V  D  E  V  L  N  T  Y  H  N  I  A  S  K  E  :  V  D  V  K  I  P  V  T  Y  R  Q  R  I  H  V  G  E  L  P  L  S  L  T  E   : V  S  G  E  L  K  E  Y  F  S  S  Y  G  N  V  V  G  N  Q  I  V  L  D  K  T  T  G  R  S  R  G  F  A  F  V  S  F  D   </second_frame>
            <third_frame>   N  L  I  R  R  Q  F  S  N  F  S  T  Q  S  *  G  L  T  Q  S  Q  I  T  Q  Y  L  I  L  V  L  K  S  V  *  V  L  L  R  F  I  I  S  F  D  Q  L  E  R  I  W  L  I  G  K  P  L  V  L  Q  Q   : D  H  F  L  L  E  A  F  L  W  I  *  P  K  :  N  H  *  G  L  I  S  V  S  L  E  R  *  L  I  *  Y  *  S  V  I  K  V  L  D  L  L  H  M  L  T  R  K  L  *  M  K  F  *  T  H  T  I  T  *  L  V  K  R :   W  M  *  R  Y  R  *  L  I  D  R  E  F  M  L  V  N  F  R  C  L  *  P  K  :  F  Q  V  S  *  R  N  I  F  R  L  M  A  M  L  W  E  I  R  S  F  W  I  K  Q  L  A  A  P  E  A  L  P  L  *  V  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50411" stop="50263"/>
                    <exon start="50167" stop="50127"/>
                    <exon start="50040" stop="49895"/>
                    <exon start="49802" stop="49730"/>
                    <exon start="49657" stop="49545"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTKLGFNAITNNSVFDSRAEIRLGFVAIHYLFRSVGKDMADREAPGSSARSLFIGGISMDITEESLRAHFSQFGEIADLVLKRDKGFGFVTYANPETVDEVLNTYHNIASKEVDVKIPVTYRQRIHVGELPLSLTEVSGELKEYFSSYGNVVGNQIVLDKTTGRSRGFAFVSFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="69990" PGL_stop="71615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69990" e_stop="70003"/>
            <exon e_start="70467" e_stop="71615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.157" acc_prob="0.000" e_score="0.643"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.643">
            <gDNA_exon_boundary e_start="69990" e_stop="70003" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.157" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70004" i_stop="70466" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="70467" e_stop="71615" e_length="1149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69990" stop="70003"/>
              <exon start="70467" stop="71373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70763" stop="71615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTTCTTCTTT : CCTGAAAAGAAGGTGACATTTGTTTTCCCTGCTTCTACAACTATTTTCCTTGCCGTTCAGATTCCTCTACCCTAAAAATTGAAAAGGGTCCTCTTCTTTATCTTTCAGCTCTATTCACTGGTGATTTCTATCTCCATTTTACCTTTCCTCTCCTTCAATTTACTCTTCCAGAGTTTTTCCTTATTTCGTATCAATAACAACAGGAGATGGAACTAAAATTCAAAAAAAGAAAAGGTATCATTTTTGGAAGTCTAAACTTTGTTGTTCTAGAAGGTTCTGAGGATACTTATGTGCAGATTCAGGGGCAGCATCGGAGTCCAGTGACGAGAGGAATTGGTGTGGCAGCAGCCGCAGCTACTGGTGGCACTGCCACCACAGCTGTCCCAGGTGGTGTTGCAAACCAGTTCAAGCCTACGTCTCTGTACATAGGAGACTTGGACATCAACGTGACACATACACAACTGCACCAGCTGCTTAACCAAGCGGGTCAGGTTATATCAGTTAGGATTTGTAGGGACTTTAGCACTCGGAGATCCCTTGGCTATGGCTTCATCAACTACAGCAACCCTCAGGATGCTGCAAGGGCAATGGAGATGTTAGATTTCACTCCTGTTAATGGAAAGTCCATTAGGGTGAAGCGCTCTCATAGGGATCCTAATTCTCCTAAGAATAGAAGAGCTAATCTATTTATCAGGAATTTGGACAAGTCAATTGAAATCGAAGCTTTACATGACACCTTTTCAAACTTTGGCTACATTTGTTCTTGCAAGATAGTTACTGATTCTAATGGCCAGTCGAAGGGTTATGGTTTTTACAATTTGACAATGATGAATCCGCTCAAAGTTGCCATAGATAAGTCAAATGGTGTGCTCATCAATGGTAGGCAAGTGTATGTTGCACATGCTCTTTGCAAAGAGAAGAGTGGCATAGGCACAAGCTGGGGAAGGACAATGGAGTGGTGAACGTCCTCCAGTGCGCAGGCAATAGTAATTTGTGGTGGTTGCCCACTAGGCTAAAAGCTATGGGGAAGGACCAATCTTGAAACCCTTGGTTGATAAATTTGTCTTCGCCTCATTTTGGTATGTTCATCTTTCCTTTTTGTCTATTCCTTTTGTTGGCAGTGATTTTGTGATCTCTCAGGGTTATCTT</gDNA_template>
            <first_frame> M  I  S  S  F :   L  K  R  R  *  H  L  F  S  L  L  L  Q  L  F  S  L  P  F  R  F  L  Y  P  K  N  *  K  G  S  S  S  L  S  F  S  S  I  H  W  *  F  L  S  P  F  Y  L  S  S  P  S  I  Y  S  S  R  V  F  P  Y  F  V  S  I  T  T  G  D  G  T  K  I  Q  K  K  K  R  Y  H  F  W  K  S  K  L  C  C  S  R  R  F  *  G  Y  L  C  A  D  S  G  A  A  S  E  S  S  D  E  R  N  W  C  G  S  S  R  S  Y  W  W  H  C  H  H  S  C  P  R  W  C  C  K  P  V  Q  A  Y  V  S  V  H  R  R  L  G  H  Q  R  D  T  Y  T  T  A  P  A  A  *  P  S  G  S  G  Y  I  S  *  D  L  *  G  L  *  H  S  E  I  P  W  L  W  L  H  Q  L  Q  Q  P  S  G  C  C  K  G  N  G  D  V  R  F  H  S  C  *  W  K  V  H  *  G  E  A  L  S  *  G  S  *  F  S  *  E  *  K  S  *  S  I  Y  Q  E  F  G  Q  V  N  *  N  R  S  F  T  *  H  L  F  K  L  W  L  H  L  F  L  Q  D  S  Y  *  F  *  W  P  V  E  G  L  W  F  L  Q  F  D  N  D  E  S  A  Q  S  C  H  R  *  V  K  W  C  A  H  Q  W  *  A  S  V  C  C  T  C  S  L  Q  R  E  E  W  H  R  H  K  L  G  K  D  N  G  V  V  N  V  L  Q  C  A  G  N  S  N  L  W  W  L  P  T  R  L  K  A  M  G  K  D  Q  S  *  N  P  W  L  I  N  L  S  S  P  H  F  G  M  F  I  F  P  F  C  L  F  L  L  L  A  V  I  L  *  S  L  R  V  I   </first_frame>
            <second_frame>  *  F  L  L   : S  *  K  E  G  D  I  C  F  P  C  F  Y  N  Y  F  P  C  R  S  D  S  S  T  L  K  I  E  K  G  P  L  L  Y  L  S  A  L  F  T  G  D  F  Y  L  H  F  T  F  P  L  L  Q  F  T  L  P  E  F  F  L  I  S  Y  Q  *  Q  Q  E  M  E  L  K  F  K  K  R  K  G  I  I  F  G  S  L  N  F  V  V  L  E  G  S  E  D  T  Y  V  Q  I  Q  G  Q  H  R  S  P  V  T  R  G  I  G  V  A  A  A  A  A  T  G  G  T  A  T  T  A  V  P  G  G  V  A  N  Q  F  K  P  T  S  L  Y  I  G  D  L  D  I  N  V  T  H  T  Q  L  H  Q  L  L  N  Q  A  G  Q  V  I  S  V  R  I  C  R  D  F  S  T  R  R  S  L  G  Y  G  F  I  N  Y  S  N  P  Q  D  A  A  R  A  M  E  M  L  D  F  T  P  V  N  G  K  S  I  R  V  K  R  S  H  R  D  P  N  S  P  K  N  R  R  A  N  L  F  I  R  N  L  D  K  S  I  E  I  E  A  L  H  D  T  F  S  N  F  G  Y  I  C  S  C  K  I  V  T  D  S  N  G  Q  S  K  G  Y  G  F  Y  N  L  T  M  M  N  P  L  K  V  A  I  D  K  S  N  G  V  L  I  N  G  R  Q  V  Y  V  A  H  A  L  C  K  E  K  S  G  I  G  T  S  W  G  R  T  M  E  W  *  T  S  S  S  A  Q  A  I  V  I  C  G  G  C  P  L  G  *  K  L  W  G  R  T  N  L  E  T  L  G  *  *  I  C  L  R  L  I  L  V  C  S  S  F  L  F  V  Y  S  F  C  W  Q  *  F  C  D  L  S  G  L  S  </second_frame>
            <third_frame>   D  F  F  F  :  P  E  K  K  V  T  F  V  F  P  A  S  T  T  I  F  L  A  V  Q  I  P  L  P  *  K  L  K  R  V  L  F  F  I  F  Q  L  Y  S  L  V  I  S  I  S  I  L  P  F  L  S  F  N  L  L  F  Q  S  F  S  L  F  R  I  N  N  N  R  R  W  N  *  N  S  K  K  E  K  V  S  F  L  E  V  *  T  L  L  F  *  K  V  L  R  I  L  M  C  R  F  R  G  S  I  G  V  Q  *  R  E  E  L  V  W  Q  Q  P  Q  L  L  V  A  L  P  P  Q  L  S  Q  V  V  L  Q  T  S  S  S  L  R  L  C  T  *  E  T  W  T  S  T  *  H  I  H  N  C  T  S  C  L  T  K  R  V  R  L  Y  Q  L  G  F  V  G  T  L  A  L  G  D  P  L  A  M  A  S  S  T  T  A  T  L  R  M  L  Q  G  Q  W  R  C  *  I  S  L  L  L  M  E  S  P  L  G  *  S  A  L  I  G  I  L  I  L  L  R  I  E  E  L  I  Y  L  S  G  I  W  T  S  Q  L  K  S  K  L  Y  M  T  P  F  Q  T  L  A  T  F  V  L  A  R  *  L  L  I  L  M  A  S  R  R  V  M  V  F  T  I  *  Q  *  *  I  R  S  K  L  P  *  I  S  Q  M  V  C  S  S  M  V  G  K  C  M  L  H  M  L  F  A  K  R  R  V  A  *  A  Q  A  G  E  G  Q  W  S  G  E  R  P  P  V  R  R  Q  *  *  F  V  V  V  A  H  *  A  K  S  Y  G  E  G  P  I  L  K  P  L  V  D  K  F  V  F  A  S  F  W  Y  V  H  L  S  F  L  S  I  P  F  V  G  S  D  F  V  I  S  Q  G  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70664" stop="71428"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQEMELKFKKRKGIIFGSLNFVVLEGSEDTYVQIQGQHRSPVTRGIGVAAAAATGGTATTAVPGGVANQFKPTSLYIGDLDINVTHTQLHQLLNQAGQVISVRICRDFSTRRSLGYGFINYSNPQDAARAMEMLDFTPVNGKSIRVKRSHRDPNSPKNRRANLFIRNLDKSIEIEALHDTFSNFGYICSCKIVTDSNGQSKGYGFYNLTMMNPLKVAIDKSNGVLINGRQVYVAHALCKEKSGIGTSWGRTMEW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="74574" PGL_stop="76807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75446" e_stop="75865"/>
            <exon e_start="75970" e_stop="76807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.639" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="75446" e_stop="75865" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.639" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75866" i_stop="75969" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75970" e_stop="76807" e_length="838"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75446" stop="75865"/>
              <exon start="75970" stop="76027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75614" stop="75865"/>
              <exon start="75970" stop="76195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75741" stop="75865"/>
              <exon start="75970" stop="76509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75741" stop="75865"/>
              <exon start="75970" stop="76502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76137" stop="76654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76146" stop="76807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTCTTCAGACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTACTTTAATAGCCATGAACAGATTCAAGCTGCTACGTTTCCCATGAAAAAAGAGCAGCAAAGTAGCGATTTCAGACATATTGAGATTCCTCCATGGCTAATTACCACGAATTCACAACCATTTCAGCTTGGAGCTATTAATCCTAGTCCTTCAGTACCGCTCAGTAATTTTAGCTCATCGTCAATTTTTCCAGCTACTACTAGGTTAGATCAACAATACAGTCAAAGCAGCCACAAAGATTTAAATCTTCATCATCAGAACCCAAACCCTAATCTCAGAG : GACCTACATTAGGTTACGATTCAATGGGAGAATCAGGTGTGGTCTCTCCAGTACACATTTCTGCAACTGCATTGCTGCAGAAAGCAGCCCAGTTTGGTGCTACAATTAGTAACAAAGCAAGTGCTGTCACTGCTACTGCTGCTTACACAGGCACAGCAAAAATACCCCACAATACTCACGTGTCTGTTACTAGTACTGATTCTGCTACCAAACAAACTCAGCAGAAATTGTCCTCACGTGAAGACCTGACCACTATTACTGGGCCTGCAAATAATATAAGTGGCATCATGACATCTTTTTCTAATGGCTTTGATGGGTCAACAATGTTTGAAGATGCGATATTATTCGGTGGATTCAACAATTTGAATTCAAAAAAGGAGAACGAGGACGAAGATCAACAACTCTACTTCAATGGAAGTATGAATGAGGAGGATCATATATTAACCAAAGATTTCTTGGGTTTAAAACCTCTCTCTCACACTGATGACATTTTCAACATTGCTGCTCTTGTTAATACTGAATTTAAAAATCATAAAACTTGGCAAAGTTAAAATTACAATCATCTCTTTTAGTTGTACACCTCTAGAAACTGATATATGTATTGTACGTGTAGAACTCGGTGAAAGTTCAGATAATCAATGCTCTCCTCACCATATAGAAATCAATACATTAATATTATATTTTTATTTAGTTTTATTATTATTTATGTGTGTTATAACACGTTTTTTAAGTTTTATAGATGGAATAGCTAGTTGGTGAGTTCATTGTCATCTATGGATGTTCAAGTTGCGAATATTTTGAAATATATTATTTTTTATGAAATTGATATAGTTAAGGA</gDNA_template>
            <first_frame> R  S  S  D  E  I  V  S  S  H  T  E  H  S  A  R  L  *  L  W  R  A  Q  D  Q  *  *  M  N  E  I  Q  Q  F  S  H  L  K  *  I  S  S  F  N  S  L  T  T  L  I  A  M  N  R  F  K  L  L  R  F  P  *  K  K  S  S  K  V  A  I  S  D  I  L  R  F  L  H  G  *  L  P  R  I  H  N  H  F  S  L  E  L  L  I  L  V  L  Q  Y  R  S  V  I  L  A  H  R  Q  F  F  Q  L  L  L  G  *  I  N  N  T  V  K  A  A  T  K  I  *  I  F  I  I  R  T  Q  T  L  I  S  E  :  D  L  H  *  V  T  I  Q  W  E  N  Q  V  W  S  L  Q  Y  T  F  L  Q  L  H  C  C  R  K  Q  P  S  L  V  L  Q  L  V  T  K  Q  V  L  S  L  L  L  L  L  T  Q  A  Q  Q  K  Y  P  T  I  L  T  C  L  L  L  V  L  I  L  L  P  N  K  L  S  R  N  C  P  H  V  K  T  *  P  L  L  L  G  L  Q  I  I  *  V  A  S  *  H  L  F  L  M  A  L  M  G  Q  Q  C  L  K  M  R  Y  Y  S  V  D  S  T  I  *  I  Q  K  R  R  T  R  T  K  I  N  N  S  T  S  M  E  V  *  M  R  R  I  I  Y  *  P  K  I  S  W  V  *  N  L  S  L  T  L  M  T  F  S  T  L  L  L  L  L  I  L  N  L  K  I  I  K  L  G  K  V  K  I  T  I  I  S  F  S  C  T  P  L  E  T  D  I  C  I  V  R  V  E  L  G  E  S  S  D  N  Q  C  S  P  H  H  I  E  I  N  T  L  I  L  Y  F  Y  L  V  L  L  L  F  M  C  V  I  T  R  F  L  S  F  I  D  G  I  A  S  W  *  V  H  C  H  L  W  M  F  K  L  R  I  F  *  N  I  L  F  F  M  K  L  I  *  L  R  </first_frame>
            <second_frame>  V  L  Q  T  R  *  F  H  H  T  Q  S  I  L  R  D  F  S  Y  G  E  R  K  I  S  N  K  *  T  K  S  N  N  F  L  T  S  N  E  S  P  V  S  T  A  S  L  L  *  *  P  *  T  D  S  S  C  Y  V  S  H  E  K  R  A  A  K  *  R  F  Q  T  Y  *  D  S  S  M  A  N  Y  H  E  F  T  T  I  S  A  W  S  Y  *  S  *  S  F  S  T  A  Q  *  F  *  L  I  V  N  F  S  S  Y  Y  *  V  R  S  T  I  Q  S  K  Q  P  Q  R  F  K  S  S  S  S  E  P  K  P  *  S  Q  R :   T  Y  I  R  L  R  F  N  G  R  I  R  C  G  L  S  S  T  H  F  C  N  C  I  A  A  E  S  S  P  V  W  C  Y  N  *  *  Q  S  K  C  C  H  C  Y  C  C  L  H  R  H  S  K  N  T  P  Q  Y  S  R  V  C  Y  *  Y  *  F  C  Y  Q  T  N  S  A  E  I  V  L  T  *  R  P  D  H  Y  Y  W  A  C  K  *  Y  K  W  H  H  D  I  F  F  *  W  L  *  W  V  N  N  V  *  R  C  D  I  I  R  W  I  Q  Q  F  E  F  K  K  G  E  R  G  R  R  S  T  T  L  L  Q  W  K  Y  E  *  G  G  S  Y  I  N  Q  R  F  L  G  F  K  T  S  L  S  H  *  *  H  F  Q  H  C  C  S  C  *  Y  *  I  *  K  S  *  N  L  A  K  L  K  L  Q  S  S  L  L  V  V  H  L  *  K  L  I  Y  V  L  Y  V  *  N  S  V  K  V  Q  I  I  N  A  L  L  T  I  *  K  S  I  H  *  Y  Y  I  F  I  *  F  Y  Y  Y  L  C  V  L  *  H  V  F  *  V  L  *  M  E  *  L  V  G  E  F  I  V  I  Y  G  C  S  S  C  E  Y  F  E  I  Y  Y  F  L  *  N  *  Y  S  *  G </second_frame>
            <third_frame>   F  F  R  R  D  S  F  I  T  H  R  A  F  C  E  T  L  A  M  E  S  A  R  S  V  I  N  E  R  N  P  T  I  F  S  P  Q  M  N  L  Q  F  Q  Q  P  H  Y  F  N  S  H  E  Q  I  Q  A  A  T  F  P  M  K  K  E  Q  Q  S  S  D  F  R  H  I  E  I  P  P  W  L  I  T  T  N  S  Q  P  F  Q  L  G  A  I  N  P  S  P  S  V  P  L  S  N  F  S  S  S  S  I  F  P  A  T  T  R  L  D  Q  Q  Y  S  Q  S  S  H  K  D  L  N  L  H  H  Q  N  P  N  P  N  L  R   : G  P  T  L  G  Y  D  S  M  G  E  S  G  V  V  S  P  V  H  I  S  A  T  A  L  L  Q  K  A  A  Q  F  G  A  T  I  S  N  K  A  S  A  V  T  A  T  A  A  Y  T  G  T  A  K  I  P  H  N  T  H  V  S  V  T  S  T  D  S  A  T  K  Q  T  Q  Q  K  L  S  S  R  E  D  L  T  T  I  T  G  P  A  N  N  I  S  G  I  M  T  S  F  S  N  G  F  D  G  S  T  M  F  E  D  A  I  L  F  G  G  F  N  N  L  N  S  K  K  E  N  E  D  E  D  Q  Q  L  Y  F  N  G  S  M  N  E  E  D  H  I  L  T  K  D  F  L  G  L  K  P  L  S  H  T  D  D  I  F  N  I  A  A  L  V  N  T  E  F  K  N  H  K  T  W  Q  S  *  N  Y  N  H  L  F  *  L  Y  T  S  R  N  *  Y  M  Y  C  T  C  R  T  R  *  K  F  R  *  S  M  L  S  S  P  Y  R  N  Q  Y  I  N  I  I  F  L  F  S  F  I  I  I  Y  V  C  Y  N  T  F  F  K  F  Y  R  W  N  S  *  L  V  S  S  L  S  S  M  D  V  Q  V  A  N  I  L  K  Y  I  I  F  Y  E  I  D  I  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75448" stop="75865"/>
                    <exon start="75970" stop="76520"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFRRDSFITHRAFCETLAMESARSVINERNPTIFSPQMNLQFQQPHYFNSHEQIQAATFPMKKEQQSSDFRHIEIPPWLITTNSQPFQLGAINPSPSVPLSNFSSSSIFPATTRLDQQYSQSSHKDLNLHHQNPNPNLRGPTLGYDSMGESGVVSPVHISATALLQKAAQFGATISNKASAVTATAAYTGTAKIPHNTHVSVTSTDSATKQTQQKLSSREDLTTITGPANNISGIMTSFSNGFDGSTMFEDAILFGGFNNLNSKKENEDEDQQLYFNGSMNEEDHILTKDFLGLKPLSHTDDIFNIAALVNTEFKNHKTWQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74574" e_stop="74973"/>
            <exon e_start="75456" e_stop="75597"/>
            <exon e_start="75690" e_stop="75719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74574" e_stop="74973" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.989">
            <gDNA_intron_boundary i_start="74974" i_stop="75455" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75456" e_stop="75597" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75598" i_stop="75689" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75690" e_stop="75719" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74574" stop="74973"/>
              <exon start="75456" stop="75597"/>
              <exon start="75690" stop="75719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74574" stop="74973"/>
              <exon start="75456" stop="75588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCAGAAGCAGAAGTGATAGCTTTATCACCCAAGACACTAGTGGCAACCAACAGATTCTTTTGTGAAATTTGTAACAAAGGGTTTCAAAGAGATCAAAATCTACAACTCCATAGAAGAGGACACAATTTGCCATGGAAGTTAAAGAAGAGAGAAAATAAAGAAGTAGTGAGGAAGAAAGTGTATATTTGTCCAGAGTCGAGCTGTGTGCACCATGATCCGTCTAGGGCATTAGGAGATCTTACTGGAATTAAGAAGCATTTTAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAGAAATGTTCAAAGCGTTATGCTGTTCAATCTGATTGCAAAGCTCACTTCAAGACTTGTGGTACTAGAGAATACAAATGTGAATGTGGTACTATTTTCTCAAG : ACGAGATAGTTTCATCACACACAGAGCATTCTGCGAGACTTTAGCTATGGAGAGCGCAAGATCAGTAATAAATGAACGAAATCCAACAATTTTCTCACCTCAAATGAATCTCCAGTTTCAACAGCCTCACTACTTTAATAGC : CACGAATTCACAACCATTTCAGCTTGGAGC</gDNA_template>
            <first_frame> I  Q  K  Q  K  *  *  L  Y  H  P  R  H  *  W  Q  P  T  D  S  F  V  K  F  V  T  K  G  F  K  E  I  K  I  Y  N  S  I  E  E  D  T  I  C  H  G  S  *  R  R  E  K  I  K  K  *  *  G  R  K  C  I  F  V  Q  S  R  A  V  C  T  M  I  R  L  G  H  *  E  I  L  L  E  L  R  S  I  L  A  E  N  M  V  R  R  S  G  N  V  R  N  V  Q  S  V  M  L  F  N  L  I  A  K  L  T  S  R  L  V  V  L  E  N  T  N  V  N  V  V  L  F  S  Q   : D  E  I  V  S  S  H  T  E  H  S  A  R  L  *  L  W  R  A  Q  D  Q  *  *  M  N  E  I  Q  Q  F  S  H  L  K  *  I  S  S  F  N  S  L  T  T  L  I  A :   T  N  S  Q  P  F  Q  L  G   </first_frame>
            <second_frame>  S  R  S  R  S  D  S  F  I  T  Q  D  T  S  G  N  Q  Q  I  L  L  *  N  L  *  Q  R  V  S  K  R  S  K  S  T  T  P  *  K  R  T  Q  F  A  M  E  V  K  E  E  R  K  *  R  S  S  E  E  E  S  V  Y  L  S  R  V  E  L  C  A  P  *  S  V  *  G  I  R  R  S  Y  W  N  *  E  A  F  *  Q  K  T  W  *  E  E  V  E  M  *  E  M  F  K  A  L  C  C  S  I  *  L  Q  S  S  L  Q  D  L  W  Y  *  R  I  Q  M  *  M  W  Y  Y  F  L  K  :  T  R  *  F  H  H  T  Q  S  I  L  R  D  F  S  Y  G  E  R  K  I  S  N  K  *  T  K  S  N  N  F  L  T  S  N  E  S  P  V  S  T  A  S  L  L  *  *   : P  R  I  H  N  H  F  S  L  E  </second_frame>
            <third_frame>   P  E  A  E  V  I  A  L  S  P  K  T  L  V  A  T  N  R  F  F  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  K  R  E  N  K  E  V  V  R  K  K  V  Y  I  C  P  E  S  S  C  V  H  H  D  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  S  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  R  Y  A  V  Q  S  D  C  K  A  H  F  K  T  C  G  T  R  E  Y  K  C  E  C  G  T  I  F  S  R :   R  D  S  F  I  T  H  R  A  F  C  E  T  L  A  M  E  S  A  R  S  V  I  N  E  R  N  P  T  I  F  S  P  Q  M  N  L  Q  F  Q  Q  P  H  Y  F  N  S  :  H  E  F  T  T  I  S  A  W  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74576" stop="74973"/>
                    <exon start="75456" stop="75597"/>
                    <exon start="75690" stop="75719"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEAEVIALSPKTLVATNRFFCEICNKGFQRDQNLQLHRRGHNLPWKLKKRENKEVVRKKVYICPESSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDCKAHFKTCGTREYKCECGTIFSRRDSFITHRAFCETLAMESARSVINERNPTIFSPQMNLQFQQPHYFNSHEFTTISAWS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="76659" PGL_stop="76315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76659" e_stop="76315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="76659" e_stop="76315" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76659" stop="76315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATAAAAATATAATATTAATGTATTGATTTCTATATGGTGAGGAGAGCATTGATTATCTGAACTTTCACCGAGTTCTACACGTACAATACATATATCAGTTTCTAGAGGTGTACAACTAAAAGAGATGATTGTAATTTTAACTTTGCCAAGTTTTATGATTTTTAAATTCAGTATTAACAAGAGCAGCAATGTTGAAAATGTCATCAGTGTGAGAGAGAGGTTTTAAACCCAAGAAATCTTTGGTTAATATATGATCCTCCTCATTCATACTTCCATTGAAGTAGAGTTGTTGATCTTCGTCCTCGTTCTCCTTTTTTGAATTCAAATTGTTGAATCCACCGA</gDNA_template>
            <first_frame> *  I  K  I  *  Y  *  C  I  D  F  Y  M  V  R  R  A  L  I  I  *  T  F  T  E  F  Y  T  Y  N  T  Y  I  S  F  *  R  C  T  T  K  R  D  D  C  N  F  N  F  A  K  F  Y  D  F  *  I  Q  Y  *  Q  E  Q  Q  C  *  K  C  H  Q  C  E  R  E  V  L  N  P  R  N  L  W  L  I  Y  D  P  P  H  S  Y  F  H  *  S  R  V  V  D  L  R  P  R  S  P  F  L  N  S  N  C  *  I  H  R </first_frame>
            <second_frame>  K  *  K  Y  N  I  N  V  L  I  S  I  W  *  G  E  H  *  L  S  E  L  S  P  S  S  T  R  T  I  H  I  S  V  S  R  G  V  Q  L  K  E  M  I  V  I  L  T  L  P  S  F  M  I  F  K  F  S  I  N  K  S  S  N  V  E  N  V  I  S  V  R  E  R  F  *  T  Q  E  I  F  G  *  Y  M  I  L  L  I  H  T  S  I  E  V  E  L  L  I  F  V  L  V  L  L  F  *  I  Q  I  V  E  S  T   </second_frame>
            <third_frame>   N  K  N  I  I  L  M  Y  *  F  L  Y  G  E  E  S  I  D  Y  L  N  F  H  R  V  L  H  V  Q  Y  I  Y  Q  F  L  E  V  Y  N  *  K  R  *  L  *  F  *  L  C  Q  V  L  *  F  L  N  S  V  L  T  R  A  A  M  L  K  M  S  S  V  *  E  R  G  F  K  P  K  K  S  L  V  N  I  *  S  S  S  F  I  L  P  L  K  *  S  C  *  S  S  S  S  F  S  F  F  E  F  K  L  L  N  P  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0103P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78482" PGL_stop="80399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78482" e_stop="78711"/>
            <exon e_start="79338" e_stop="79442"/>
            <exon e_start="80321" e_stop="80399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78482" e_stop="78711" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.967">
            <gDNA_intron_boundary i_start="78712" i_stop="79337" i_length="626"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79338" e_stop="79442" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="79443" i_stop="80320" i_length="878"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="80321" e_stop="80399" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78482" stop="78711"/>
              <exon start="79338" stop="79442"/>
              <exon start="80321" stop="80399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAACTTACGATGACTACAACACTGAAGAAAAACGGCATTTCCAGTTTCCGAGCAGTGGGATTGAGATTCCGAGCAGCGGCAATGGCGAAAAAACGACGCGTCGGAACGACGATCTTCATGCTCCTTTTAGCTCTCTTAGTATTCGGAGCTTTCGCACCTGCCTTTGCTCCGCTTCCTTCTCTATCATCTTTTTCTTCCCGTTCCGACATCGCTAGACTTAATTCTATG : GGTGATAAGAACAAATTTGAGATTGCGGATGATATGTTCTGGAAAGATGGGAAGCCTTTTCAGATCATTGGCGGGGACTTGCACTATTTTCGGGTTCTTCCAGAG : TACTGGGAAGATCGACTCCTGAGAGCAAAGGCATTAGGCTTGAATACCATTCAAACATATGTCCCATGGAATTTGCACG</gDNA_template>
            <first_frame> F  N  L  R  *  L  Q  H  *  R  K  T  A  F  P  V  S  E  Q  W  D  *  D  S  E  Q  R  Q  W  R  K  N  D  A  S  E  R  R  S  S  C  S  F  *  L  S  *  Y  S  E  L  S  H  L  P  L  L  R  F  L  L  Y  H  L  F  L  P  V  P  T  S  L  D  L  I  L  W :   V  I  R  T  N  L  R  L  R  M  I  C  S  G  K  M  G  S  L  F  R  S  L  A  G  T  C  T  I  F  G  F  F  Q  S :   T  G  K  I  D  S  *  E  Q  R  H  *  A  *  I  P  F  K  H  M  S  H  G  I  C  T </first_frame>
            <second_frame>  L  T  Y  D  D  Y  N  T  E  E  K  R  H  F  Q  F  P  S  S  G  I  E  I  P  S  S  G  N  G  E  K  T  T  R  R  N  D  D  L  H  A  P  F  S  S  L  S  I  R  S  F  R  T  C  L  C  S  A  S  F  S  I  I  F  F  F  P  F  R  H  R  *  T  *  F  Y   : G  *  *  E  Q  I  *  D  C  G  *  Y  V  L  E  R  W  E  A  F  S  D  H  W  R  G  L  A  L  F  S  G  S  S  R   : V  L  G  R  S  T  P  E  S  K  G  I  R  L  E  Y  H  S  N  I  C  P  M  E  F  A   </second_frame>
            <third_frame>   *  L  T  M  T  T  T  L  K  K  N  G  I  S  S  F  R  A  V  G  L  R  F  R  A  A  A  M  A  K  K  R  R  V  G  T  T  I  F  M  L  L  L  A  L  L  V  F  G  A  F  A  P  A  F  A  P  L  P  S  L  S  S  F  S  S  R  S  D  I  A  R  L  N  S  M  :  G  D  K  N  K  F  E  I  A  D  D  M  F  W  K  D  G  K  P  F  Q  I  I  G  G  D  L  H  Y  F  R  V  L  P  E  :  Y  W  E  D  R  L  L  R  A  K  A  L  G  L  N  T  I  Q  T  Y  V  P  W  N  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78487" stop="78711"/>
                    <exon start="79338" stop="79442"/>
                    <exon start="80321" stop="80398"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMTTTLKKNGISSFRAVGLRFRAAAMAKKRRVGTTIFMLLLALLVFGAFAPAFAPLPSLSSFSSRSDIARLNSMGDKNKFEIADDMFWKDGKPFQIIGGDLHYFRVLPEYWEDRLLRAKALGLNTIQTYVPWNLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="82759" PGL_stop="83371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82759" e_stop="83371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="82759" e_stop="83371" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82759" stop="83371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAGCCGTGACCACACGGTTTCAGCTACACATGGAGATATGGACCAGAACACTAGAGACATAATCATGCGTGAGTTTCGCTCTGGTTCTTCCCGTGTCCTTATCACAACTGATCTGTTGGCTCGTGGTATCGATGTACAACAAGTATCCCTTGTTATCAACTATGATCTCCCAACTCAGCCGGAGAATTATCTCCATCGTATTGGAAGAAGTGGAAGGTTTGGAAGGAAAGGAGTTGCGATCAACTTTGTGACAACAGACGACGAAAGAATGTTGTTTGATATTCAAAAATTCTACAATGTGGTCATCGAAGAACTCCCTTCAAACGTCGCTGACCTCCTCTGAAAACTTCATCTTTATAAGGTGAGTACCAAGCTTATAGTATAGAAGAAATCATTTTAAACTACCATTATTATCTATCGTCAAAAACGCACCCCTGGCATTAATGTTGCTAAGAATTTTGCAGTCAGTATGTAGTAAGGTCTTGGTTTTATTTCATTTCCAAATTCTTATACTTCTTTGGCATTAATTTTTAGTGTAGTTAAGTTCTTGATTAATGTTGTGTTCTTGTTTTAGCACAGAAATATTAATGATAAACTGAGAAATCTTGATA</gDNA_template>
            <first_frame> R  S  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  T  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  S  N  V  A  D  L  L  *  K  L  H  L  Y  K  V  S  T  K  L  I  V  *  K  K  S  F  *  T  T  I  I  I  Y  R  Q  K  R  T  P  G  I  N  V  A  K  N  F  A  V  S  M  *  *  G  L  G  F  I  S  F  P  N  S  Y  T  S  L  A  L  I  F  S  V  V  K  F  L  I  N  V  V  F  L  F  *  H  R  N  I  N  D  K  L  R  N  L  D  </first_frame>
            <second_frame>  E  A  V  T  T  R  F  Q  L  H  M  E  I  W  T  R  T  L  E  T  *  S  C  V  S  F  A  L  V  L  P  V  S  L  S  Q  L  I  C  W  L  V  V  S  M  Y  N  K  Y  P  L  L  S  T  M  I  S  Q  L  S  R  R  I  I  S  I  V  L  E  E  V  E  G  L  E  G  K  E  L  R  S  T  L  *  Q  Q  T  T  K  E  C  C  L  I  F  K  N  S  T  M  W  S  S  K  N  S  L  Q  T  S  L  T  S  S  E  N  F  I  F  I  R  *  V  P  S  L  *  Y  R  R  N  H  F  K  L  P  L  L  S  I  V  K  N  A  P  L  A  L  M  L  L  R  I  L  Q  S  V  C  S  K  V  L  V  L  F  H  F  Q  I  L  I  L  L  W  H  *  F  L  V  *  L  S  S  *  L  M  L  C  S  C  F  S  T  E  I  L  M  I  N  *  E  I  L  I </second_frame>
            <third_frame>   K  P  *  P  H  G  F  S  Y  T  W  R  Y  G  P  E  H  *  R  H  N  H  A  *  V  S  L  W  F  F  P  C  P  Y  H  N  *  S  V  G  S  W  Y  R  C  T  T  S  I  P  C  Y  Q  L  *  S  P  N  S  A  G  E  L  S  P  S  Y  W  K  K  W  K  V  W  K  E  R  S  C  D  Q  L  C  D  N  R  R  R  K  N  V  V  *  Y  S  K  I  L  Q  C  G  H  R  R  T  P  F  K  R  R  *  P  P  L  K  T  S  S  L  *  G  E  Y  Q  A  Y  S  I  E  E  I  I  L  N  Y  H  Y  Y  L  S  S  K  T  H  P  W  H  *  C  C  *  E  F  C  S  Q  Y  V  V  R  S  W  F  Y  F  I  S  K  F  L  Y  F  F  G  I  N  F  *  C  S  *  V  L  D  *  C  C  V  L  V  L  A  Q  K  Y  *  *  *  T  E  K  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103P06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82759" stop="83103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVVIEELPSNVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 107 chains have been computed
$ 
$ memory statistics:
$ 217624 bytes spliced alignments in total
$ 41 spliced alignments have been stored
$ 5307 bytes was the average size of a spliced alignment
$ 21008 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1750 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 110 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:31:12
-->
