<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:40:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2005" stop="1026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1705" g_stop="1325" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1705" e_stop="1325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCATGGTAAGGTTTTTAAC</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2522" stop="1159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2222" g_stop="1459" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2222" e_stop="1459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2191" stop="1193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1891" g_stop="1493" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1891" e_stop="1493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2495" stop="1325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2195" g_stop="1625" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2195" e_stop="1625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2737" stop="1510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2437" g_stop="1810" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2437" e_stop="1810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2679" stop="1535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2387" g_stop="1835" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2387" e_stop="1835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGAT-CCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2777" stop="1540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2477" g_stop="1840" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2477" e_stop="1840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACAGTCGGGGTCTTAATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2737" stop="1562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2437" g_stop="1862" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2437" e_stop="1862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3353" stop="2043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3053" g_stop="2343" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3053" e_stop="2343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGTCTTCACTAGAAAAATGTGAAGTTTTTGGACCGATAATCCAAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTAACATTTATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGTAGTTCATGAAAAACTTGAAATGCGTCTAATCGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTAAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGCCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACAGTCGGGGTCTTAATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5213" stop="4064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4909" g_stop="4364" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4909" e_stop="4364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG---A-A-ATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGACCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5112" stop="4131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4799" g_stop="4431" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4799" e_stop="4431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6515" stop="5144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6207" g_stop="5444" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6207" e_stop="5444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACCGTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGTAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAACAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGTATGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578306" ref_strand="-" ref_description="SGN-E578306 [LE12CB04]">
      <seq>gctagatgacctgaaccagaagaggcagtggcgatcatgtctctttngtgtttcagcaaaaggagacttctgaatctttcctcacgccaaagctttctcaggctaaaaagagattacatgaaactgcaataagacttggggagcttcaggctcagtttaagctgccgattgacccaaaggagtatgcccaagagaaccttaagtttggtttggttgaagtggtatatgaatgggcaaaggggaccccatttgctgagatatgtgaactcacagatgtccctgaaggtgtgatagtgaggactattgttagattagacgagacttgtcgtgaatttagaaatgctgctgcaattatgggcaactctgcactgtacaagaaaatggaaactgcatctaatgtgatcaagcgcgatatcgtgtttgcagctagcttgtatattaccggagtttgattagaggtcaggaagccttgatttcatttgcaattctaaaggacctgacgatacacatgttgtaccctagaatatgttcgccaaggtgtggactttgagcaaggctaccctacaatttggctaatttgtacagaaattcaagtctttcaaatgtacatttagcaattgacagtagattacaccctgattagcacagagagatacatgaacttaaaaggatttactgtatgacattctcttaaaatttaggtatgattttgaagttctgcatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31173" stop="34318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31473" g_stop="31586" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31587" i_stop="33253" i_length="1667">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33254" g_stop="33380" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="239" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33381" i_stop="33534" i_length="154">
            <donor d_prob="0.097" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33535" g_stop="34017" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="725" r_length="486" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="737"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E578306" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578306" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31473" e_stop="31586"/>
          <exon e_start="33254" e_stop="33380"/>
          <exon e_start="33535" e_stop="34017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAGGTTATTTTCTTCTCAAATATTTGGTGTGATATGCTCATGTTGACGTGTTGTCATTTTTCCTGTTCATCTATGATATATATATATTCAATTGTTTTTGGTATTTTTGGATAAAAGTTTTTATTGAAGATTTTTGATAAGATTTTGTGTTTGCGGTGTCTGAGTTTTTGAGGGATCAAACCTGTATATCAGCCATGTATATTTCTTGTAATGTTTCTTTAATGGATGGGCTTAAAAGACTGTGAAGACTTCTCCTCGTTATACATTAGGTTTAATGATAGAGAACTCATCAAAATTAATTGATGAGATGATTGGAATATGATATCTATAAAAGATGTACTTTCCTTTTTATCACTGCTTTGTTGGACAATTTAGGATTCTAACTTGGTATTTATATCTAGGATGGAATAAAATACATCATTCTTGTTTTTTATGAGAACAGAACATATCATGTTAAATGTATTCTCATGTTTCACAGAATTGCATATGCAAGTTGTACGGGATGCTAGTTACTAACTTGGGTGTATCTCAATAATTGGATTATAATATATCACATTTTTCACGGAATTGCACATCACAAGGTCACAGATCAAAGAGCTATGACACCTTTTCTTGATATAATAAAGTGGGTGCTGTGAAAGTAGAGATAAGAGTAAATGTGTGGTAAGCAATTTTTGTTTAGTGTCCCACGTTGATGGTGGAAATGGGCTGTTGTTTCTTATATGGTTTTGGGAAATCCTCATTGCATGAATTAACTTTTGGGGTTTAGTTAGGCCAAAGGTCCATTTCTCGTCATGGTATTAAAGCCAGACCTGTTCCTGTTCTTGGTTCACTCAGCATTGGGCCCCACTGTTTGTTGTTCGCTCTCCAATTATCCAGTCCTGAGCGTGTGAGTAATGTTAAATGTTCCACATTGGTGGTGAAAATGTGTTGTTGTCTCCTTATATGGTCCTGTGCGATTCTTACTTCATGAGTTTTGGAGTTGATTTAGGCTCAAGACTCATTTCTTATCAAGTTGTTTCTTCTTTATTATAGTGAATACACTTTTTAGAGGGAAACGAATTTTCTGGCCAGCTGCTAATTCTCTTATATTGTCAGTGTGTACTCTGCTTTTCCTTTATTGAAAGATTTTTTGAAAATGGGATTTGGTCAGATTTACGAATCAAGCATGTAGTGGTCTAAGACCTGGTTGCTGCTTTTGGGTCTTTCTCTGAATGCACAACTGCTAGTGGGATGTCTTTTGACTGCAAAATATCCAAATTTCCTTCTGTCAAAAAGTTACTGAACAACAGAGAATAGAGTTTTACACACTTCAGATCTTCCACAGAACATTTCTGTCAGTATTTGTGCCAACAAAGGCTGTTACTGTTTAAACGGTGTATGGCCAATTGGCTCTCTTTTACTTCTGAAGTCATGTCATCTCCTCCTTGCACTTGTCAATGTTGTCTACTTGTTTTTATTTGACTAGTGCAACTGTAGTTGTTGATTACGGTAATTTCATTCTTATAACTTCATTTGTACTTTTTCTTATTGTTTCAAGTCATTCTGATGTATTCTGTAGGTATTTTCTCATTAATTACCATGAGCTGTAACTTAACCCTGTTCTTTGATATTATAGTTTTTCTTTTTACTTTGTTCTCAATGACAATATCATTCTCGTGGCATTTCAGATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAGGTTCTCTCTCTCTCTCACTCACACACGCACACAAAAAAAATTAAGGATTTGCATGTGTGGTTGCGTATGACTTAATTATCATAATATCCTACCTGTTGCTTGATTCTTCCGTTCTTGAGTGTGGGGTGTCTCTAATTCTGCTTCCGTCTTGCAGGGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTATATATTACCGGAGTTTGATT--AGGTCCGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAAACTT-AAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</genome_strand>
        <mrna_strand>GCTAGATGACCT-GAACCAGAAGAGGCAGTGGCGATCATGTC-TCTTTNGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAG..........................................................................................................................................................GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTGATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTGTATATTACCGGAGTTTGATTAGAGGTCAGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACCCTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATTGACAGTAGATTACACCCTGATTAGCACAGAGAGATACATGAACTTAAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374200" ref_strand="+" ref_description="SGN-E374200 [TUS-33-F19]">
      <seq>caaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaatttatattagccaaatatcagctaagggggtgtgatggaatggttcgaataacctaaaccattaaccagaggtctcgaatttaaactgttgtgaacgaaaaatagcattataaaggatatccttttctttctgtgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37472" stop="33908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37172" g_stop="36997" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="269" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="404" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34214" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="715" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="731"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E374200" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37172" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTCCTGT</genome_strand>
        <mrna_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339334" ref_strand="-" ref_description="SGN-E339334 [cTOF-4-L4]">
      <seq>agaagaagaagaaaatggaagtgaatggaaatattagacccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37550" stop="34048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37250" g_stop="36997" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="348" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="483" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34336" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="672" r_length="189" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E339334" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37250" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGA-CCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCC</genome_strand>
        <mrna_strand>AGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273189" ref_strand="+" ref_description="SGN-E273189 [cLEM-24-L8]">
      <seq>tggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37525" stop="34042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37225" g_stop="36997" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="322" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="457" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34342" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="640" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E273189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37225" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATA</genome_strand>
        <mrna_strand>TGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298932" ref_strand="+" ref_description="SGN-E298932 [cLET-42-O13]">
      <seq>aagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgattggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaagaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37545" stop="34044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37245" g_stop="36997" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="342" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="477" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34344" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="658" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E298932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37245" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTA</genome_strand>
        <mrna_strand>AAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGATTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340816" ref_strand="+" ref_description="SGN-E340816 [cTOF-5-D23]">
      <seq>ttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttgggttgtatttgaataacatgctatatgaattatttcaaacgattttaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="34048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37306" g_stop="36997" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="406" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="541" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34345" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="722" r_length="181" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E340816" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37306" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAA---AATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTT-GGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTT</genome_strand>
        <mrna_strand>TTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341789" ref_strand="+" ref_description="SGN-E341789 [cTOF-9-C18]">
      <seq>aaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgggaagcttggcttcaaacttgtgtctcttttgtttgggtggtattttgaataacatgctatatngaattatttcaaacgattttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="34053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37289" g_stop="36997" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="389" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="524" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34353" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="700" r_length="176" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E341789" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37289" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTAC---AAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTC-AACTTGTGTCTCTTTTGTTT-GGTTGTA-TTTGAATAACATGCTATAT-GAATTATTTCAAACGATTTTAATG</genome_strand>
        <mrna_strand>AAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGGGAAGCTTGGCTTCAAACTTGTGTCTCTTTTGTTTGGGTGGTATTTTGAATAACATGCTATATNGAATTATTTCAAACGATTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719007" ref_strand="+" ref_description="SGN-E719007 [FC06BH12]">
      <seq>gacctaccaccaactcccaataatctcaaaatatctttgaaggaaaaaatatctaccccacaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcaaaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgcttattttgtatttctgtgaagcttggcttcaacttgtgtctcttttgtttggttgtatttgaataacatgctatatgaattatttcaaacgattttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="34054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37427" g_stop="36997" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="527" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="662" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34354" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="833" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E719007" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37427" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTAC---AAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAT</genome_strand>
        <mrna_strand>GACCTACCACCAACTCCCAATAATCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCACAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300644" ref_strand="+" ref_description="SGN-E300644 [cLET-45-N7]">
      <seq>caaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattggattccttctgctgttgatgaggttaattttatctcaggaaaaccacacagaagtgataactgaaattgagtctttgataaagacagtatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37472" stop="34153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37172" g_stop="36997" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="269" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34855" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="404" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34524" g_stop="34453" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="476" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E300644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37172" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34855"/>
          <exon e_start="34524" e_stop="34453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAGGTATGACCAAATGAAACTTTTTGTATATGTGACTAAATGTTTGCGATAACTTGTTGAGAGGCGCGTGAGATGAAAAAGTCTTAGAAGTGATCTCACATGACACAATGAGTTCATGGTGAACACCTGATAGTTTAGGTTTGAAACTCGAAAGACAAAAATAGTTTTAGGGAGGGGGTTGGGGGTTATTTTATTCACTCAAATTGATTTCCACATGTATTGCCACTTGGAATTCTTGTGTAATATGTCAACCCAAACTGTTTTATTTTATTTCTTTGGTTATTGTAATTCTCAAAATTAATGTCTAATTGTCTGTCATTTTTGGTGGATCAGGTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGC</genome_strand>
        <mrna_strand>CAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG..........................................................................................................................................................................................................................................................................................................................................GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294546" ref_strand="+" ref_description="SGN-E294546 [cLET-22-I24]">
      <seq>tcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagctgattatactactgatccaagccatgtttacaaggggaatccagctactaatgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="34575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37305" g_stop="36997" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34875" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="520" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E294546" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37305" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAA---AATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA</genome_strand>
        <mrna_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296694" ref_strand="+" ref_description="SGN-E296694 [cLET-39-H4]">
      <seq>tcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacgacaggaacaggatttatcaaagtggagaataatgagaacacttttaatataggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="34633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37305" g_stop="36997" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35810" g_stop="35718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34989" g_stop="34933" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="462" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E296694" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37305" e_stop="36997"/>
          <exon e_start="35810" e_stop="35718"/>
          <exon e_start="34989" e_stop="34933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAA---AATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTTGTCTGTATATTTTTTGGTTGCTAAACTAAACATGTTGTTATAAAGAGCATAAAAGAGTTAATAGTAAAAAAATACACTTACACACTTTTTCGCGGTTTCATACGCCAACTATCATTGTTCTCTTTATCTAAACTATCACTTTTTTTTGTATTAAAGCACACATCAATTCTGAGTTGGCCAAATATTTGTCCACAATCAACGATAGGCATGTGTAGGCCAACTCAGCATCGAGATATGTTTTAATACAAAGGTAATGATACACGGTTGAGATGTGAAACTCGCGAGAAATTGATAGATTAGGTAGGTAAATAGAAGAATAGATATTTGAGGTGTGAAACACGCGAAAAAATGATGTTTTGTGTGTGCTTTTTTACCATTAACTCAACATGTATTATAATGTAATGTGAAAACTCGGTTCTGAAGAAAACTTAGTTGTTAGAGTGAAATGTTGTTATTGAGGATGGATGTTACAGAGAGGTTTGATTGTGTTCTTTTAGTGTCTATGTTGCTCGGGTTCTCTAAAAATAATGTAATTTCGGAGGATCTGACATGCTCGTGGCTGTATTTTTATTGGATCCAAGAGCAATGTAGCTTTTGGTTTAAAAAATAAGGTTGATGAACTTTTTTTTTGTGGGAAAATGCAGACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCT</genome_strand>
        <mrna_strand>TCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391841" ref_strand="+" ref_description="SGN-E391841 [TUS-24-P15]">
      <seq>gaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttcatttgttgacaaataatagatgccgtcctagtgtcagattttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75500" stop="72867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75200" g_stop="75105" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75104" i_stop="74384" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74383" g_stop="74303" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="177" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74302" i_stop="74025" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74024" g_stop="73938" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="264" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73937" i_stop="73460" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73459" g_stop="73106" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="618" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E391841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75200" e_stop="75105"/>
          <exon e_start="74383" e_stop="74303"/>
          <exon e_start="74024" e_stop="73938"/>
          <exon e_start="73459" e_stop="73106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTCATTTGTTGACAAATAATAGATGCCGTCCTAGTGTCAGATTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247177" ref_strand="+" ref_description="SGN-E247177 [cLEF-46-D18]">
      <seq>aagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctgcctgttggaaccgttagtggagcgcctaaggtaaaagccatggagctaattgatcaactggaagtcacaaggcgtggaccatacagcggtggatttggaggaatttcctttaccggagaaatggacattgccttagctttgagaatcatagtatttccaactggaacgcgttacgacactatgtactcgtacaaggatgtcgacaagcgacgagattggattgcttatctccaagctggagcaggtatagtggctgatagtgacccagctgatgagcaaaatgaatgcgaaaataaagctgcagctcttgtccgtgccattgatcttgctgagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75499" stop="72867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75199" g_stop="75105" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75104" i_stop="74384" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74383" g_stop="74303" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="176" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74302" i_stop="74025" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74024" g_stop="73938" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73937" i_stop="73460" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73459" g_stop="73152" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="571" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E247177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75199" e_stop="75105"/>
          <exon e_start="74383" e_stop="74303"/>
          <exon e_start="74024" e_stop="73938"/>
          <exon e_start="73459" e_stop="73152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAGAGGGGTGAAGGGGGCTGAGGGCTGAAGCTAATATTGGTACGGTTATGTGTTTAAGGTCAATCCATCTGGAACTTGTAAGAACTATTGATATGCTTTGAGGTGTTTCGTGAAGGAATTTATAGCTGTATAGTTTTAATTTTTTGTATGTTCACGAAGGGGGCGTAAATAATTCATGCCTCTTGCTTGGTATAGGTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGANNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAATCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGATCTTGCTGAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701552" ref_strand="+" ref_description="SGN-E701552 [FA16BB12]">
      <seq>cttcatctaggactttatgatgatgtaattgtgtttgatcatgtggaaaagaaagcatttgtcatacattgggtgcggttagatcgctttgcttcagtagaggaggcctacaatgatggtacaaccagattagaagcattgttgtctagagtacatgatattgtacctcctacactggcttcagggtcaataaaacttcatactagtctatttggtacttcattgaaaaattcaaccatgacaagcgaagactaccagaaggctgttttaaaggccaaggaacatatccttgctggggacattttccaaattgttcttagtcaacgttttgaaagacgaacctttgcagatccatttgaagtatacagagcactaagaatcgtaaatccaagtccttatatgacttatctacaggctcgggggtgtatacttgttgcttctagtcctgaaattcttactcgagtgaagaagaaaacagttaccaatcggcccctagcagggactattagaagaggtaagacacttgaggaagattatatgctggaaaatcaacttttgcacgacgagaaacagtgtgcagagcatataatgctggttgacttgggaagaaatgatgttggaaaggtctctaagcctggttcggtgaaagttgagaaactaatgaacattgaacggtattcccatgtcatgcacatcagctctacggttactggagagctacttgaccatttgagtagctgggatgctctgcgtgcagccctggctgttggaaccgttagtggagcgcctaaggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77003" stop="73636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76703" g_stop="76653" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76652" i_stop="75982" i_length="671">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75981" g_stop="75866" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="167" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75865" i_stop="75773" i_length="93">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75772" g_stop="75526" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="414" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75525" i_stop="75448" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75447" g_stop="75391" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="471" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75390" i_stop="75258" i_length="133">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75257" g_stop="75105" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="624" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75104" i_stop="74384" i_length="721">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74383" g_stop="74303" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="705" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74302" i_stop="74025" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74024" g_stop="73938" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="792" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73937" i_stop="73657" i_length="281">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73656" g_stop="73652" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="797" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E701552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76703" e_stop="76653"/>
          <exon e_start="75981" e_stop="75866"/>
          <exon e_start="75772" e_stop="75526"/>
          <exon e_start="75447" e_stop="75391"/>
          <exon e_start="75257" e_stop="75105"/>
          <exon e_start="74383" e_stop="74303"/>
          <exon e_start="74024" e_stop="73938"/>
          <exon e_start="73656" e_stop="73652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAGGTAGTTTAATTTTCTGTACCCAACAAACCTTCAATTTATTTTGTTTTCCAGATTTATATTAACCTATTTTTTTCCTATGGCCCATCTGGTTCATGAACATATGCTTTAGCTCTCAATGAAGTGCTTCAATATAAGCACTTCGATTTCACTTTTTGTACTAGGATAAATTTCTTCAATTTGTCGTGCATATTTGCCATTCATTATGGTGTTCTCTTTATTTTTCATTGAATTTCTTGGGTTTGAATATGTGGAATTGAGTAGTTAGTATCCCACATCGATGGTGATTGTGGCAATTTTTCTTCATATATGTTCTTTGACAATCCTCGTTCGATGAGCTATCTTTTGAAGTTGAGTTATGTCCTAGATCCATTTCTAAACATGCATGGTATGAGAGCTAGATCATTTACATTCTTGGTTTACCCAATGTTGGATACCCATATTATGTTGTCCGTGCAGGGGATGTGAAGTGTCTCACATTGGTAGAGGAAATGGGTTATTGTTTGGCCATGCTCACCCTTTGAGCTAGCTTTAGAATTGAATTAGCTTTTAGTGTTGGCTTATGCATAAGGTGCATTTCTTTACATGATTACTTTCATGATCAACTTCTAGTAGTAAGGTAATTATTTTTCAAGGTATTATGGTCCATTACTCAAATTTCTGCTTGATACCAGAAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACCGTAAGTTAATTTCACTTCCTCTTCCAATAATTCTAACCTTATTTTCTGCTCCTTTCCTTTCCTTTATTTGGTTGTACTGGTTTCTTCTTTTAGTCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAGGTATGCCTGTTTTCCTTGAAACTTTGACTCTTCAAATTCTATTTCCCTGGTTTCTCACGAAGGATATGTTCTGATCAGGCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAGGTAAATCAACTGATGTTCTCTATTCTAATTTGCAGATTGCATGTCGATTTCACCCCGAATTCCATCTGTCATCGTGTCTACCATTAACAACTTTGCTAATGATCTAAAACCGTTCGTTTTTTTTTTGGTCCAGAAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAGGTGAACACTCCTAATTTCCCTTTGTTTTTATTTGTCTCTATAGGTTAATGGAATTTGTGCATTATTAGAGGTGTATTATATAATCTTCTATCTGCCAAGATTCGATAAATCTACATCTGGAGTCTGGACTAGTAATTGGACAACTGAAAATAATTGCTCATCTTGTTGATTGTAATTCTCATCGTCACATTGCTTATTGCTACTTTTGACATCATCCTACTTCCTCTGGACTACATTGATCCTTTAATTCTATATGTTTAGGTTGTCAATATTTAGGTAGCATCTCATCTCTGTCATGTAATGATCTTGTTCTTGTTTTGGACTAAGTTGTGTAGAGTAAAGTTCTTCACTATGGTGCCGCTCCTATGTCGACACAACGTGGGTGTGGCATATGTACCGGATCAGGTCAATCGATTTTAGGTAGTTTGACCATAAGTTGATAGAGAAATTCAAGATAAATACAAAGATTTCAGAAATCAAAACAAAAGATAGGGTAAAAGCATAAATAGGCATGTGCATAATATATTGTACAGTGTTTATGCAATTCATCCTCCATTTATGCGTTGGCATTTTTGCTCAATCAGCTTCTATTATTTGAATTCCTAGGTACCTACTGAATTTTATTTGTTAATTAACTTCTCACGTTAGAGTCCTTGTAAGCATTTTATTGAAGCCGTCTTTCAGTACAATAATCTTTGACTAACTTCGATTCTTAATTCAGGTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACGGTGAGTTCTTGTCATATGAATTGTATTTAATTATAGCTATTCTTTTACGTTAATTGGAGTCTTACATGTTACTTGCATAAGTTATGTTACCTAAGTGCAACAAAGTTTGCTTTCTGAGAGAAATGTCAGTTACAAATAACATTTGTTCTTATACATTACGTTACTTCCTTTCTGACATATTTCAGTAATTAGAGAATCATCACTAAGACTCTTGGATGTTGTGAAATATAATGATTTGTCTGGCTTGTTACAAGGTTTTGTTTTGTCAAAATTTGCAGGTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAGGTTCTACAATCATTTTGTACTTTTGGTATATTAATTATTTGAAAAGGCAGTGTCGGTTATTTGAGTTCTGGGTGCTTTCTGCTGCCTTAATGTCTTAAGTTATGGGAAGTAGCCAAACTGATGCCCCCAGTCTTTGGAAGTATGGTCTTTCCACTTCGCTGAATTTGATCAGTTGGTGGAGATATTGATAATCAATTCTTCTATCCTGAACAGAAAGTTTATGCATATCGTCTCTTTTTCATCAAGTGTTAACAAGTGAACTATTTATTATTTTCTGGAAGTGAAG</genome_strand>
        <mrna_strand>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCATTGTTGTCTAGAGTACATGATATTGTACC.............................................................................................TCCTACACTGGCTTCAGGGTCAATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG..............................................................................GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG.....................................................................................................................................AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG......................................................................................................................................................................................................................................................................................GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGGCTGTTGGAACCGTTAGTGGAGCGCCTAAG.........................................................................................................................................................................................................................................................................................GTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538890" ref_strand="+" ref_description="SGN-E538890 [TUS-58-F21]">
      <seq>ttgatttcgagatgtcggcaagaggatgtgaaggagtgagcgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtaccaccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttgaacgannnnatataaaaggaatgacaaaatggacggaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84739" stop="83565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84439" g_stop="83858" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E538890" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84439" e_stop="83858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTCTA</genome_strand>
        <mrna_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGANNNNATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278945" ref_strand="+" ref_description="SGN-E278945 [cLER-2-M12]">
      <seq>tgatttcgagatgtcggcaagaggatgtgaaggagtgagcgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtaccaccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttgaacgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84738" stop="83565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84438" g_stop="83860" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E278945" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84438" e_stop="83860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTC</genome_strand>
        <mrna_strand>TGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715025" ref_strand="+" ref_description="SGN-E715025 [FB13AE01]">
      <seq>caatggtatcacttctctcaccacttatactaaagttagtatattttcttaaaaatatatatataattgtgtggtgttcgagtcagtttgcgttaaatcatctttgatttcgagatgtcgtcaaggggatgtgaaggagtgagtgtggtgaagccagagatgaccaagaatacaaagatagcaagcaagttccaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtagcacaaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttataaagatggtatcttcttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttctgctaagccaaccgctaccttaaatattgactcacatagggcggaggcaattgatgattgtattcaattcatcaacttgtcttcttctttgcctagatctaattcagtgtcataagagatcggagaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttttgtggttttgtatctataagttgattatatttttaaaattagacgtgtgatttgaatagaataattattttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84842" stop="83568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84542" g_stop="83868" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E715025" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84542" e_stop="83868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAA</genome_strand>
        <mrna_strand>CAATGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGTCAAGGGGATGTGAAGGAGTGAGTGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTCCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTAGCACAACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATAAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGGGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGG--AGAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTTTGTGGTTTTGTATCTATAAGTTGATTATATTTTTAAAATTAGACGTGTGATTTGAATAGAATAATTATTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538888" ref_strand="+" ref_description="SGN-E538888 [TUS-58-F21](-)">
      <seq>ttgatttcgagatgtcggcaagaggatgtgaaggagtgaccgtggtgaacccagagatggccaagaatacaaagatagcaagcaagtttcaaaagcaaaactctacaaagagtgttgttgatggtactacaaataatgcaaggagtacccccaccacaacaagttgtagcttcaagatgcctaatagatcccaattatcccctattaagattttcaaacaacttggaggaaaaatggttgcacttatgaagatggtatttttttcaaagagaagttgtaggaaagttactaattcgtcagagagagcaacaatttttgttaagccaaccgctaccttaaatattgactcacatagagcggaggcaattgatgattgtattcaattcatcaacttgtctttttctttgcctagatctaattcagtgtcataagagatcggaaaaaatctcttgataagaagcgttttatcgtgttatttatattaattgaccacttttgtatggttttgtatctataagtagattatatttttaacattagacgtgtgatttgaatagaataattattttggccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84739" stop="83565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84439" g_stop="83870" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="613"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E538888" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84439" e_stop="83870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTG</genome_strand>
        <mrna_strand>TTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGACCGTGGTGAACCCAGAGATGGCCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCCCCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATTTTTTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTTTGTTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTTTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746596" ref_strand="+" ref_description="SGN-E746596 [GI|47104154]">
      <seq>cctcgtgccgcatttacagctctaattcatttgcttcagacgttgatagacagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcagttacggggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtattcatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgttaacccgcgtgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgaaaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcataagcttcaatgggcaacaatgtggggtgcagatacgatcatggatctctccactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagctgggaagtgtttagagagaccttaattgaacaagctgagcaaggagttgattacttcacaatccatgccggagtccttctcaggtacatcccactgacagcaaaacggatgaccggaattgtttctcgtggaggctcaattcatgcaaagtggtgcttagcttatcacaaggagaatttcgcttatgaacattgggatgacatacttgacatctgtaatcagtacgatatatcgttatcaattggtgatggactgagacctggttcaatttatgatgcaaatgacaccgctcagtttgctgagctcttgactcaaggggagctgactcgccgagcttgggaaaaggatgtacaggttatgaatgaaggacctggacacgtaccaatgcataagattcccgagaacatgcagaaacagctagagtggtgtaatgaagcaccattctacactcttggaccattgacaactgatatagctcccggatatgatcatatcacctcagctatcggtgcagccaatataggagcactcgggactgcacttctgtgttacgtcactccaaaagagcatcttggtcttcctaatcgcgatgacgtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcttgggatgacgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttgtcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcggtcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagaaaattacatcaactctttgaagagccaaacgaatgtgtaaagatcgaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtattaggtaagtatctagtttggtactgttaaataaactgagacaaacagccttgttcaatgaaactctcctttgttagtaatgagaaaacgcgtattttcttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96481" stop="101922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96778" g_stop="96817" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96818" i_stop="98342" i_length="1525">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98343" g_stop="98664" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="361" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98909" g_stop="99036" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="489" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99673" g_stop="100499" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="1316" r_length="827" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100500" i_stop="100632" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100633" g_stop="101315" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1999" r_length="683" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.413" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101422" g_stop="101621" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="2000" r_stop="2198" r_length="199" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2200" polyA_stop="2214"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E746596" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>2200</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96778" e_stop="96817"/>
          <exon e_start="98343" e_stop="98664"/>
          <exon e_start="98909" e_stop="99036"/>
          <exon e_start="99673" e_stop="100499"/>
          <exon e_start="100633" e_stop="101315"/>
          <exon e_start="101422" e_stop="101621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCTCATCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAGGTAAATCGCTAATGCTGTCTATTTCTGTTTCAGTAATTAGCTTTTTGTTTGTCTATTTCGTCTCCTGAATATCAGTTTTGAGCTACCGCCTAATTGGTAACGCTTTAACGACAAACATTGTGTTTGATTTCAGGTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGAC-AACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTT</genome_strand>
        <mrna_strand>CCTCGTGCC-GCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATAGACAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCAGTTACGGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATTCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAAAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCATAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATCATGGATCTCTCCACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGCTGGGAAGTGTTTAGAGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG.....................................................................................................................................GTTATGAATGAAGGACCTGGACACGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTCTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTTCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCTTGGGATGACGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTGTCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGTCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAC..........................................................................................................GAATGTGTAAAGATCG-AAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTATTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAG-AAAACGCGTATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366329" ref_strand="+" ref_description="SGN-E366329 [cLPT-1-E9]">
      <seq>tgccgcatttacagctctaattcatttgcttcagacgttgatagacagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcagttacggggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtattcatctttccggggatgaaccacattttgacacttatgataccagtggtcctcagggtgttaacccgcgtgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggacccaagtatactcaaatgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96489" stop="100048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96784" g_stop="96817" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96818" i_stop="98342" i_length="1525">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98343" g_stop="98664" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="356" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98909" g_stop="99036" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="484" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99673" g_stop="99748" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="560" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E366329" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96784" e_stop="96817"/>
          <exon e_start="98343" e_stop="98664"/>
          <exon e_start="98909" e_stop="99036"/>
          <exon e_start="99673" e_stop="99748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTA</genome_strand>
        <mrna_strand>TGCCGCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATAGACAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCAGTTACGGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATTCATCTTTCCGGGGATGAACCACATTTTGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCCAAGTATACTCAAATGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331516" ref_strand="+" ref_description="SGN-E331516 [cTOD-9-I24]">
      <seq>tcatttacagctctaattcatttgcttcagacgttgattggaagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96488" stop="100001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96788" g_stop="96817" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96818" i_stop="98342" i_length="1525">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98343" g_stop="98664" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="352" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98909" g_stop="99036" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="480" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99673" g_stop="99701" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="509" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E331516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96788" e_stop="96817"/>
          <exon e_start="98343" e_stop="98664"/>
          <exon e_start="98909" e_stop="99036"/>
          <exon e_start="99673" e_stop="99701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTACAGCTCTAATTCATTTGCTTCAGGTACGTTTATTCTTATTAAATTATTAAAAACCCTTAATTGCGTGTCGAATCTTTCAAAAATATATATATAAAATGTTTACGAGTGTGTATCCATTGGATCTGATACAAATGAGGCAACACAATAACATTTACGTGAAGAGTCTGAGCAACACAGATTAAGCTGATAAATAAAAAGAAAATTTATGCATACCTTTTTCTCTATTAGATCTGTATATTCGTTACTTCCATCGCGAAAATTGCTCGTAGCTAGTAACTTTTTTTTTGTTAATTCTATCATTTCCCGTAAGCATTAGACTTTCGGATATATCAGCAGACATAAGGAGAAGTATTTATCAAAGAGGGAATCAGATGTATCAGAGAGGGGAGGGATGTACTTGAAAGGATATAGGAATTTATTAGCGAGAGGCAATTTGAGAATTTTAGAGATTATGATAAAATAAGATGCGTATTTAGATAATTTTTTCAAAAATAAATGAACACTTTTGGTCAAAAGGTGGTCTAGCGCAACCTCCAAGTAGGAATAGATTCTATGAGTCGTGATACAGTTAAGATAGGGGGCATTTCTAGCATTGAAAATCCTTATTCTTATTGAATAGTTCAAATAACTAGTTGAACGTACCTATTCTTTTCAAGAATAGCCTCCCGTTATCGAAAAGAAGGGCCCGAAGAAGAGATGACTGGCCATCCTTCTCATCCCCCTTAGGAAGTAGAGCGCGGTGAAAGAATTCTGTCGTTCAGTCGAAGGGGGCAGGTTTGCAGCTTCAGGATAACCCGAGCAGTGAAAGAGAAGTAAATCCTGTGTGATAAAATTAAAGTTACCTGGTACTTAGTGGAATAGTCGATAGACATGAATACTCGATTGAGGTGGATCTATGATTTAAATTTGATAGTTTACTTTTGCAATCATAGGTGCAGATGTTAATATTTGTTGAAACTTTAGTGTTTCGTATATTTTGTGTTAATATGATTAGTTCAGTTGAATCCGTTGATTATATATCGCATTTGATACTTGGAATGATCTTTCAAAACACAGCCAATAAATTAGAATGTCATTGTTCCACCATAGTCTTTGTGTTGATGATCAATATATTTTACCTAAAAACTAAAATGTCATCATTCGACGTGACCAAATCTAGTAAATCGATCCCTTACTTTCATTTTATGTTGTGCCATTTGACTTGAAACAGAGTTTAGGATAGGACGATTGTTGAAATACCTGGTTCAAAATATGTCACAACATTTATGTAGCTATATAAAACATGTTTAGGCGAAATGAGAAGTTAAAAGTTAAATTGCAAGTACTTTTTGCTATAACATATGATCTAGCTACAAATTCTGAAGTCTCCGTGGTGGTTCGTTTGCGGTTTTGGTTTGTGATATTCAACTAGTAGCATCACTCACTTTTTGTTGTATCATTTTACAAGCTTGATTTGTTCTAAAAATGTGTTTTTTTCCCTCATTCTGCTTATATATGAATGAACTTATAGTATTAAAATTTGTGAAACAATGGCTTTGTTATCCTTAGACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATT</genome_strand>
        <mrna_strand>TCATTTACAGCTCTAATTCATTTGCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705310" ref_strand="+" ref_description="SGN-E705310 [FA26DA10]">
      <seq>ctgtaagatggcgtctgtccaaactgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgagagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttacgataccagtggtcctcagggtgttaacccgcgcgttggacttccaaagctacgcacggagtggattaacaggagggagaagttaggaggaccaaggcatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98051" stop="100376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98350" g_stop="98664" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98909" g_stop="99036" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="443" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99673" g_stop="100076" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="847" r_length="404" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E705310" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98350" e_stop="98664"/>
          <exon e_start="98909" e_stop="99036"/>
          <exon e_start="99673" e_stop="100076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</genome_strand>
        <mrna_strand>CTGTAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTACGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAAAGCTACGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGCATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689429" ref_strand="+" ref_description="SGN-E689429 [t3_tus_84_L19]">
      <seq>ctttaagctttgacatcactcctatgcaagaaagggaacacccatcaacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacccccagaagggaaacgcgtttcaattctttttcaagcccgaaagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagttccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98075" stop="100218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98369" g_stop="98664" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98909" g_stop="99036" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="424" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99673" g_stop="99918" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="670" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E689429" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98369" e_stop="98664"/>
          <exon e_start="98909" e_stop="99036"/>
          <exon e_start="99673" e_stop="99918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAG</genome_strand>
        <mrna_strand>CTTTAAGCTTTGACATCACTCCTATGCAAGAAAGGGAACACCCATCAACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACCCCCAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAAAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTTCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334275" ref_strand="+" ref_description="SGN-E334275 [cTOD-21-K13]">
      <seq>tgctttgacatcactcctatgcaagaaagggaacaataatccacaagtaaatgttccaagaagttccttcttgccagggtttgatttgacagggcaagttgcggttacagggagaagggaaacgcgtttcaattctttttcaagcccgaaagcaacacttacctttgatcctcccagtactgataataaagagaagacaaagccaaagcacactgttgatcctaatgctcctgatttcctgccccttccaccattcgaacaatgctttccgaaaagctccaaggaatacagtgaagttatgcatgaagaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98074" stop="100248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98374" g_stop="98664" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98909" g_stop="99036" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="419" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99673" g_stop="99948" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="694" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E334275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98374" e_stop="98664"/>
          <exon e_start="98909" e_stop="99036"/>
          <exon e_start="99673" e_stop="99948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAGGTCTGCCTAGAATCCATCATGTCTTTGCTCTTCGAGATAACAATATTTGTTGAGGATTCAGTATGTGGAATTTGTAACACTAGTATACTATTGAGACATCTCTTTGATATCTCGAGTGAAATGGCTAAACGTTTAAAATCTCATTGTATAGCTTCACAGAAGAAATGCAGTACACATGCTTTATTTCAAATCTCTAAGCTCATTGGTTCGCGAAATGCTTATTAGTTGAATGTGCAATTTGCAGTGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTG</genome_strand>
        <mrna_strand>TGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAAAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG....................................................................................................................................................................................................................................................TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAAC-AGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736279" ref_strand="+" ref_description="SGN-E736279 [LC05AC06]">
      <seq>aataaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagttgggaagtgtttagggagaccttaattgaacaagctgagcaaggagttgattacttcacaatccatgccggagtccttctcaggtacatcccactgacagcaaaacggatgaccggaattgtttctcgtggaggctcaattcatgcaaagtggtgcttagcttatcacaaggagaatttcgcttatgaacattgggatgacatacttgacatctgtaatcagtacgatatatcgttatcanttggtgatggactgagacctggttcaatttatgatgcaaatgacaccgctcagtttgctgagctcttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98623" stop="100757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98923" g_stop="99036" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99673" g_stop="100457" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="899" r_length="785" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E736279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98923" e_stop="99036"/>
          <exon e_start="99673" e_stop="100457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</genome_strand>
        <mrna_strand>AATAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCANTTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333069" ref_strand="+" ref_description="SGN-E333069 [cTOD-19-C12]">
      <seq>agaaactggtcatgtactcaaagtcccatttcgacgtatccatctttccggggatgaaccacatttcgacacttatgataccagtggtcctcagggtgttaacccgcgcgttggacttcccaagctgcgcacggagtggattaacaggagggagaagttaggaggaccaaggtatactcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcgggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98624" stop="100376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98924" g_stop="99036" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636">
            <donor d_prob="0.509" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99673" g_stop="100076" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="516" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E333069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98924" e_stop="99036"/>
          <exon e_start="99673" e_stop="100076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTGGTAAGCCTGTTATCTATCCTTTTGATGATAACATCCCCTGCGATGAAATTTCTATTTGCGATTCTTGGAAGTTGAATTATCTGATCTTGGATGTTCATCCATATTTCATAAAATTGTTTTCTTTTAAAAAGATCTGGAATATTATTAGCTCTTAAAATGATTCAATATAGGCGATACCAATTAGTTGAATTTAAGTTTTAGTCATGTAGGTTTGTTTACTATAAGTACAATATTCGCTTTAGTCTTTTCAGAGATTATATACTAAGGGGAAATAATCAAATATAGAAACCTCTTAGTGCTATAGAACCTTATTCTTTTAAACATTGGATTGCGACGAATTTAAATGGAGGGACATAGAAGTGAGGATTCCTATAGTACATAACTAATATGGGATTAATGCTTCGTAGTTTATCTTTTGTATTATTAGCTATCAATTTCCACATTTGTTTTTTCTTTCTTTTCATCTGTTCGAGTCTTGCATATATTATTTTCACTCTGCTAAAGACAACCTTTTGAGTCAAAGTTGTTTGTACTTTATGTCAAATGAAACATTAAGCTAAATGTCATGTTGTGATTTTTTACATTATGATTTAGAACATAATCTATTTATATCATAATGATTATGCATCTAAATAGGACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</genome_strand>
        <mrna_strand>AGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTC-GGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282032" ref_strand="+" ref_description="SGN-E282032 [cLES-2-L9]">
      <seq>tcaaatgttctatgctaagcagggaatcataactgaggaaatggtgtactgtgctgctcgtgagaagatggatccggaatttgtgaggtcagaagttgctcggggccgtgcaatcatcccttcaaacaagaagcaccctgagttggagccaatgatagtaggaagaaagttcttagtgaaagtcaatgccaacatcgggaactctgctgttgtaagctcgattgaagaagaagttcacaagcttcaatgggcaacaatgtggggtgcagatacgattatggatctctctactggtcgtcacatccacgagactcgtgagtggatcttgcgtaattctgctgtaccagtaggcactgtgccaatttaccaagcactagaaaaagtaaacgggattgctgagaatcttagttgggaagtgtttagggagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99437" stop="100467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99737" g_stop="100167" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E282032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99737" e_stop="100167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCT</genome_strand>
        <mrna_strand>TCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287711" ref_strand="+" ref_description="SGN-E287711 [cLES-9-P17]">
      <seq>agagcatcttggtctgcctaatcgcgatgacgtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100542" stop="101605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100842" g_stop="101305" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E287711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100842" e_stop="101305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGA</genome_strand>
        <mrna_strand>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687918" ref_strand="+" ref_description="SGN-E687918 [T3_tus_81_K05]">
      <seq>gtgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcacaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttgaagagccaaaggaatgtgtaaagatcgaaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctattcaagacaccatcttgtattgtttgtttttttggtgtcctgtaccgcattgaggcctgactaaatacagattcccgcactctgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100573" stop="102257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100873" g_stop="101315" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101422" g_stop="101524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="546" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101525" i_stop="101687" i_length="163">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101688" g_stop="101957" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="816" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E687918" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100873" e_stop="101315"/>
          <exon e_start="101422" e_stop="101524"/>
          <exon e_start="101688" e_stop="101957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACA</genome_strand>
        <mrna_strand>GTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCACAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG...................................................................................................................................................................CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328406" ref_strand="+" ref_description="SGN-E328406 [cTOC-21-F17]">
      <seq>tgaagacaggtgtaatatcatataagatagctgctcatgcagctgatcttgcaaaaggtcacccgctatctcaagcctgggatgatgcacttagcaaggcaagatttgagttcagatggatggaccaattcgctttatcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctctatgtgcgggcctaagttttgctccatgaaaataaccgaagatataagaaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagagaattacatcaactctttgaagagccaaaggaatgtgtaaagatcgaaaactggctcacagatttctgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtgttagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100574" stop="102173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100874" g_stop="101315" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101422" g_stop="101524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="545" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101525" i_stop="101687" i_length="163">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101688" g_stop="101869" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="727" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E328406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100874" e_stop="101315"/>
          <exon e_start="101422" e_stop="101524"/>
          <exon e_start="101688" e_stop="101869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTTGTGTTCAGTCTTTTATATCTTTTAAGTTTTATTGACACGAGAAAGCACCGGGGGTGTCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTA</genome_strand>
        <mrna_strand>TGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG..........................................................................................................GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG...................................................................................................................................................................CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366330" ref_strand="+" ref_description="SGN-E366330 [cLPT-1-E9](-)">
      <seq>gatttgagttcagatggatggaccaattcgctttgtcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcggtcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacacggtgaggttggcggtgagatctacttgccagaaaattacatcaactctttgaagagccaaacgaatgtgtaaagatcgaaactggctcacagatttttgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtattaggtaagtatctagtttggtactgttaaataaactgagacaaacagcttgtatcaatgaaactctcctttgttagtaatgagaaaacgcgtattttgttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100676" stop="101922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100976" g_stop="101315" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.413" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101422" g_stop="101611" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="529" r_length="189" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="558"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E366330" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100976" e_stop="101315"/>
          <exon e_start="101422" e_stop="101611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGAC-AACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGC</genome_strand>
        <mrna_strand>GATTTGAGTTCAGATGGATGGACCAATTCGCTTTGTCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGTCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAC..........................................................................................................GAATGTGTAAAGATCG-AAACTGGCTCACAGATTTTTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTATTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAAACAGCTTGTATCAATGAAACTCTCCTTTGTTAGTAATGAG-AAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366347" ref_strand="+" ref_description="SGN-E366347 [cLPT-1-I1](-)">
      <seq>ttgtcattggaccccgttactgcaatgtcctttcacgacgaaactttaccagccgatggggctaaagtggcacatttctgctcgatgtgcggtcctaagttttgctccatgaaaataaccgaagatataaggaagtatgctgaaaatcatggttatggaaatgcagaggaagccattcagcagggcatggatgctatgagtgcagcgtttcaagctgcaaaaaaaaccattagtggggaacaacccggtgaggttggcggtgagatctacttgccagaaaattacatcaactctttgaagagccaaacgaatgtgtaaagatcgaaactggctcacagatttttgaagtgatcacaactccatcggccagtcaaggaggcggtagtaggagcctcattatcaagtattaggtaagtatctagtttggtactgttaaataaactgagacaaacagccttgttcaataaaactctcctttgttagtaatgagaaaacgcgtattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100708" stop="101919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101008" g_stop="101315" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.413" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101422" g_stop="101619" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="505" r_length="197" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E366347" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101008" e_stop="101315"/>
          <exon e_start="101422" e_stop="101619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAGGTGAGTATTACATTCTGCAAGTCCTTTGAAGACACTCGTATAATGCAGAGTCTTTGTGTATTCCGATTAAAGCTCCTTTCACTTACCTTAAAGAATACAATTTCAGGAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGAC-AACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTC</genome_strand>
        <mrna_strand>TTGTCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCGATGTGCGGTCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGGAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACCCGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAAAATTACATCAACTCTTTGAAGAGCCAAAC..........................................................................................................GAATGTGTAAAGATCG-AAACTGGCTCACAGATTTTTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTATTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAAACAGCCTTGTTCAATAAAACTCTCCTTTGTTAGTAATGAG-AAAACGCGTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335976" ref_strand="+" ref_description="SGN-E335976 [cTOE-6-F23]">
      <seq>tctgtgtcagcttcaaatgctgactgatcaggctgagaaagtccctttgaacctgaacgggataattcctgcgtagggagcgtgcaatttcttttttcttgcttgcacagggatggcgattctccaaaatggttgaaaattcaaaattaatctgatcctgctctttgccaggaccagtttattcactgtctattcaagacaccatcttgtattgtttgtttttttggtgtcctgtaccgcattgaggcctgactaaatacagattcccgcactctgtacataacagagctcgaattcgacacctttgattggtagtaaaggggtatttatcactccatcacgacccttgttggtaaggcatattcgtgtatgcctctgagacgcgattggttacttacaattgaccaattttctcatggttagtctagctttggttggactattgaaacattcagttatatgaatgactcaattgcatatataccttcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101378" stop="102471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101678" g_stop="102171" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E335976" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101678" e_stop="102171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</genome_strand>
        <mrna_strand>TCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTTATATGAATGACTCAATTGCATATATACCTTCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112966" stop="114214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113266" g_stop="113914" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113266" e_stop="113914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112967" stop="113951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113267" g_stop="113651" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113267" e_stop="113651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113625" stop="115032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113925" g_stop="114732" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113925" e_stop="114732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119338" stop="120399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119638" g_stop="120096" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119638" e_stop="120096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAA-TTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTA-AAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288383" ref_strand="+" ref_description="SGN-E288383 [cLES-16-O1]">
      <seq>tcaacttgtgggggaataattttgacatcgattcaacattgagcttccttgaatcattgacaaactgtaggaatctaagagtactcacgcttggtggtaatccgttggatggtgttttgcctgcatctgttgggaatttctcaaactgcttgcaaatatgtgaagcatctaaatgtaaactgaatggtgtcatttcaaaacaaattactaatcttactggattgacaaggatgagtctgtcgaacaatcagttgataggccatattccaacaacagtgcaaggaatgctgaaccttcaagaactttacctatgaagcaacaagttagaaggagccataccagatgttatctgcagttgacagtatcttggtgcattagaattgtcagagaatcaattttctagtttcgttccaccatgcttagggaatgttactagtttgaggacactctatctagataacaacaagctggattctagattacctgcaagattggggggacttcaaaacatcatagagttcaatatttcatccaattatttgagtggagaaattccgctagagagcggaaacttgaatggtgcaacactgattgatctgtcaaataattatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="127351" stop="126135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127051" g_stop="126435" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E288383" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127051" e_stop="126435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</genome_strand>
        <mrna_strand>TCAACTTGTGGGGGAATAATTTTGACATCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGGAATTTCTCAAACTGCTTGCAAATATGTGAAGCATCTAAATGTAAACTGAATGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGCCATATTCCAACAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTATGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTGACAGTATCTTGGTGCATTAGAATTGTCAGAGAATCAATTTTCTAGTTTCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAATGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="157186" stop="156098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156886" g_stop="156399" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156886" e_stop="156399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTGAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAATATCTGGAGCTTTTCGTCTAATTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="159309" stop="160282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159609" g_stop="159962" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="159609" e_stop="159962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCATTATCAAAATGGTATGAAAGGACATTGGACTTGTGAATGTTGTCGACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAAAACAAATAAATAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATGGTGGATGCTCGACCATTCTATATGAGAATGGGTCCAGATATGATAAAATCATTATGGGTTGGATATATGTTACAACTCACCTCTATGGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162397" stop="161122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162097" g_stop="161422" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162097" e_stop="161422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTCTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATATCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACAGTCGACGGTTATTTGATATTGATTCCAACAAGACATAACTTATCGAGATCTATTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGAACATATTGATCATTTGCTCTTTCCTTCTTCAAGGAATTTTATATTTGGAATCAATTTGTCTATTATGCTTTCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162397" stop="161395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162097" g_stop="161695" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162097" e_stop="161695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTCTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATATCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161403" stop="162680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161703" g_stop="162380" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161703" e_stop="162380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGATACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTATCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161405" stop="162558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161704" g_stop="162258" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161704" e_stop="162258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGATACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTATCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161408" stop="162461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161708" g_stop="162161" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161708" e_stop="162161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161452" stop="162634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161752" g_stop="162334" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161752" e_stop="162334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGATACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTATCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="+" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161810" stop="162818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162110" g_stop="162518" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162110" e_stop="162518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGATACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTATCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341086" ref_strand="+" ref_description="SGN-E341086 [cTOE-22-E16]">
      <seq>tttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagcatcacacggttactactctcactcactcttataacactcttattacctaaaaaatccaattacagtcgaacctctctatgacgacatcggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="35335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="166332" g_stop="166053" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="166052" i_stop="164868" i_length="1185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="164867" g_stop="164691" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="457" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E341086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="166332" e_stop="166053"/>
          <exon e_start="164867" e_stop="164691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286685" ref_strand="+" ref_description="SGN-E286685 [cLES-14-K11]">
      <seq>gaaaaaatatctaccccaaaagatatctaactactttacaacatttgtagcacatgatattattacattgatgaaccccttcaactaacatcaaacaaataatattaccctctttttttttcaagattttttacaagaagaagaagaagaaaatggaagtgaatggaaatattagaccaaatagaagtgatgttcatttatcaaaagaggaagaaacaaagatagaagaggaaacaagagagtattttgatggcattgcaccaaaaagacacactaaacctcaaagaagtgattattcttcaacttatgttgatcacatcaatctctacccttcttctcatgacacaattcccgaaaatctcgaattccaacgtctcgaaaatgatcctcagaaattggtttacaatggcagccaagtgacagaggaatttattgaaacagaatattacaaagatcttaattgcattgacaagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0107A05-yzDtw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0107A05.1" temp_strand="-" temp_description="C06HBa0107A05.1  AC211044.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0107A05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="166621" stop="35425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="166444" g_stop="166053" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="166052" i_stop="164868" i_length="1185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="164867" g_stop="164782" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="478" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0107A05.1" gen_strand="-" ref_id="SGN-E286685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0107A05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="166444" e_stop="166053"/>
          <exon e_start="164867" e_stop="164782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAGGTCTACCTCCTTCTCTGCATATGTCTGTTTTGTTTTAATCAGTAGAGGCGGATTCAGGATTTGAACTATTAATATATTTAAACTCCATGCCAAGCATTGAATCATAATAGTTTTTGTATTAGTAGGTTCCGAGTAGATTATTTGTACATATTAGATATACACATATGATGTTTGAGCTAAAGTTAATGAATTTTGTCCAACTCTTAACTATGCCTTGAAAATGATTTTCATGTTAATTAAGCTCCCCCCCACCCCCCACCCCCACCCCTCATTTTTCACTTTTGGGGTTTCTCCTTGTTAGTGAATAATATATCAGTAGAAAATTTAGATTTACAATTTCTAGTGATACAGGAACTACTTCCCACCAAAATAGTGAGAAACTTCATAAGTTTTTCATAGGGATAAGGTGCAATTAGCCTTAGACTATACCCGAAATCCCAAAAACATATCTTAACTAAACTAAGATCATATTATGATGAACTTGTTTTTTTGTATTTTTGTACACCTTTTTGTCTTACGTGGTATTCAATATCTCTCATGTGTCTCAACTGCGTGAAGTCACGGAGTATACCAAGTAAGTTAAAAGGAGTATAAAATTACAAAAATAAAATGAGTACAGAGGTAATAGGACTTAAGTTTAGTTAAAAGTGTAGTACTTGTACATGCCCTTTTTTCATATTAAAACATTACTATTTTATTCTTTTCTCGCTGATTTAATCAAAATATTTGTGGTCTTAGCCACTTAACAATGACTTTTACTAGCTTGGAATTGAAGTGTAGTTGATCCATTTGAATCACACTTTTGTTGATCCAATGGCTCAGAGATAGCACTTCGCTTTAAGTGTTGAGTCATGCACAATTTTTTTTCTCGATGTATCAAAGAGTACCTATGAACTATGTTCCGATTTACTCATAAGGAAGAAAACGGGGGACGGGGTTGGGGACCGGACTATATGATGTGATAGTAAACAGGAACCATTATGTAAAAGACTTTGGTATCTATGTTTGGTTGGATTCTTCCAAAAACATCGCCAGGTGTGTGTCGAATCCTACAAAATGTATGTATTTTTGAAGGATTTGACACGGAAACGGAAACATTTTGGAGGGTCTAAGTAACATAGTCGCGAATTATAAATCACATTAATGTCAATCAGATTCATATATCTTTTGGTTTTGGTTTTGCAGAAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCA</genome_strand>
        <mrna_strand>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>61</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3053" PGL_stop="1325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3053" e_stop="1325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="3053" e_stop="1325" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3053" stop="2343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2477" stop="1840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2437" stop="1810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2437" stop="1862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2387" stop="1835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2222" stop="1459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2195" stop="1625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1891" stop="1493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1705" stop="1325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGTCTTCACTAGAAAAATGTGAAGTTTTTGGACCGATAATCCAAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTAACATTTATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGTAGTTCATGAAAAACTTGAAATGCGTCTAATCGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTAAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGCCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACAGTCGGGGTCTTAATTTGTAATAATAGTTGTGTATGTTGATGGTTTGAACATCATTGGCACTCATAAAGAGCTTTTAAAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTATTTTGCAGTAAGTCTACTAGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATATTTCGATATCTTCGAGGGACCATGCACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCACGGTATTTATCAGATCCTCATAAAGCTTGATCACAAACAGGATATTTGTTTACATGTGGAGACATGACAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGTGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGTATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAGGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCATGGTAAGGTTTTTAAC</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  C  L  H  *  K  N  V  K  F  L  D  R  *  S  K  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  T  F  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  S  D  I  S  *  I  W  *  F  M  K  N  L  K  C  V  *  S  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  N  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  A  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  S  R  G  L  N  L  *  *  *  L  C  M  L  M  V  *  T  S  L  A  L  I  K  S  F  *  K  L  L  S  V  *  K  K  N  L  K  *  K  I  S  A  R  Q  N  F  I  L  A  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  I  L  Q  *  V  Y  *  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  C  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  H  G  I  Y  Q  I  L  I  K  L  D  H  K  Q  D  I  C  L  H  V  E  T  *  Q  Y  L  G  D  Q  *  S  K  R  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  V  S  A  S  G  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  F  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  G  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  V  F  T  R  K  M  *  S  F  W  T  D  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  G  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  *  H  L  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  Q  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  R  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  T  S  E  I  S  V  W  I  E  T  I  R  K  D  V  V  Q  S  P  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  L  I  C  N  N  S  C  V  C  *  W  F  E  H  H  W  H  S  *  R  A  F  K  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  P  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  A  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  S  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  I  S  I  S  S  R  D  H  A  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  T  V  F  I  R  S  S  *  S  L  I  T  N  R  I  F  V  Y  M  W  R  H  D  N  I  L  A  I  N  E  A  N  V  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  *  V  R  L  V  E  I  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  V  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  R  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  G  F  H  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  S  S  L  E  K  C  E  V  F  G  P  I  I  Q  T  P  E  G  I  K  P  V  G  Y  K  W  V  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  N  I  Y  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  V  V  H  E  K  L  E  M  R  L  I  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  K  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  Q  S  G  S  *  F  V  I  I  V  V  Y  V  D  G  L  N  I  I  G  T  H  K  E  L  L  K  A  V  E  C  L  K  K  E  F  E  M  K  D  L  G  K  T  K  F  Y  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  Y  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  F  R  Y  L  R  G  T  M  H  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  R  Y  L  S  D  P  H  K  A  *  S  Q  T  G  Y  L  F  T  C  G  D  M  T  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  A  S  R  E  C  V  W  L  R  S  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  V  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  Y  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  G  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  W  V  F  M  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3051" stop="2437"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELSSLEKCEVFGPIIQTPEGIKPVGYKWVFVRKRNEKGEVMRYKARLVAQGFSQRPNIYYMETYSPVVDAITFRYLINLVVHEKLEMRLIDVVTAYLYGSLDHNIFMKIPKAFKVPEAYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKQSGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2436" stop="1867"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVIIVVYVDGLNIIGTHKELLKAVECLKKEFEMKDLGKTKFYLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDIYFAVSLLARFSSSPTKRHWNGVKHIFRYLRGTMHMGLFYSNESKSELIGYADARYLSDPHKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1866" stop="1417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQTGYLFTCGDMTISWRSMKQTLVATSSNHAEIIAIHEASRECVWLRSMTHHIQKMCGFSLKKNIPTTMYEDNAACIVQLKGGYIKGDRTKHISPKFFFTYDLQQNGEIEVQQIRSGDNLADLFTKALPTSTFEKLRYKIGMRRLRDIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4909" PGL_stop="4364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4909" e_stop="4364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="4909" e_stop="4364" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4909" stop="4364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4799" stop="4431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGACCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  D  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  R  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  Y  L  A  *  P  V  G  P  S  Q  I  *  Y  D  A  Q  N  H  *  E  F  T  W  A  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  T  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  S  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  Q  L  G  H  P  R  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  H  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  S  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  L  F  G  M  T  S  W  A  I  P  D  L  I  *  C  A  K  S  L  R  I  H  M  G  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4908" stop="4366"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETTNEGKVEYLYITTINVEKKIVHEKSPAFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDQLGHPRFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6207" PGL_stop="5444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6207" e_stop="5444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="6207" e_stop="5444" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6207" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACCGTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGTAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAACAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGTATGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  N  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  K  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  Y  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  Y  P  L  E  *  W  T  D  L  K  G  R  Y  D  H  R  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  W  F  Q  D  F  K  T  V  I  E  Y  N  R  V  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  N  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  *  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  V  W  G  R  G   </first_frame>
            <second_frame>  T  R  Y  Q  H  E  I  A  T  C  K  G  T  I  *  I  F  L  F  N  S  H  I  L  S  *  F  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  K  K  H  P  V  K  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  N  I  H  L  N  S  G  L  I  *  R  G  D  M  T  T  E  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  E  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  F  M  P  R  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  F  W  W  L  N  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  D  I  I  M  Y  G  D  V  A  </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  R  S  I  Q  S  R  *  G  E  G  Y  D  F  P  S  L  S  S  *  *  G  P  E  D  *  I  S  D  G  E  I  S  T  *  I  V  D  *  F  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  S  L  *  V  D  A  F  M  V  S  R  F  *  D  R  N  *  I  Q  Q  S  C  I  Q  D  N  L  P  V  E  I  M  W  G  D  Y  K  R  *  E  H  V  G  K  D  T  Y  Y  F  S  C  L  E  C  D  I  A  V  A  I  S  *  K  G  F  S  E  I  F  *  T  N  L  M  S  F  G  G  *  T  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  I  *  *  C  M  G  T  W  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6147" stop="5887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYSLIIFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLAAKGLDATITQGKEASSQDKAKAMIFLRYHLDEGLKIEYLTVKYPLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5886" stop="5656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTDLKGRYDHRKATVLPRARYEWMHLWFQDFKTVIEYNRVVFRITSQLKLCGETIKDENMLEKTLTTFHASNVILQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5655" stop="5446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNVWGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="31473" PGL_stop="34017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31473" e_stop="31586"/>
            <exon e_start="33254" e_stop="33380"/>
            <exon e_start="33535" e_stop="34017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="0.947"/>
          <exon-intron don_prob="0.097" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="31473" e_stop="31586" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31587" i_stop="33253" i_length="1667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33254" e_stop="33380" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.097" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33381" i_stop="33534" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="33535" e_stop="34017" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31473" stop="31586"/>
              <exon start="33254" stop="33380"/>
              <exon start="33535" stop="34017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578306" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCAAAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG : ATTACATGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAAGGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAAG : GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAGGACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGGCAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGTGTTTGCAGCTAGCTTATATATTACCGGAGTTTGATTAGGTCCGGAAGCCTTGATTTCATTTGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTGTGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTCAAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAAACTTAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGCATCT</gDNA_template>
            <first_frame> A  *  *  P  G  A  R  R  G  S  G  D  H  V  F  L  C  V  S  A  K  G  D  F  *  I  F  P  H  A  K  A  F  S  G  *  K  E  :  I  T  *  N  C  N  K  T  W  G  A  S  G  S  V  *  A  A  D  *  P  K  G  V  C  P  R  E  P  *  V  W  F  G  *  S  G  I  *  M  G  K   : G  D  P  I  C  *  D  M  *  T  H  R  C  P  *  R  C  Y  S  E  D  Y  C  *  I  R  R  D  L  S  *  I  *  K  C  C  C  N  Y  G  Q  L  C  T  V  Q  E  N  G  N  C  I  *  C  D  Q  A  R  Y  R  V  C  S  *  L  I  Y  Y  R  S  L  I  R  S  G  S  L  D  F  I  C  N  S  K  G  P  D  D  T  H  V  V  H  *  N  M  F  A  K  V  W  T  L  S  K  A  T  L  Q  F  G  *  F  V  Q  K  F  K  S  F  K  C  T  F  S  N  R  Q  *  I  T  P  *  L  A  Q  R  D  T  *  T  *  R  I  Y  C  M  T  F  S  *  N  L  G  M  I  L  K  F  C  I  </first_frame>
            <second_frame>  L  D  D  L  E  P  E  E  A  V  A  I  M  S  S  F  V  F  Q  Q  K  E  T  S  E  S  F  L  T  P  K  L  S  Q  A  K  K  R :   L  H  E  T  A  I  R  L  G  E  L  Q  A  Q  F  K  L  P  I  D  P  K  E  Y  A  Q  E  N  L  K  F  G  L  V  E  V  V  Y  E  W  A  K  :  G  T  P  F  A  E  I  C  E  L  T  D  V  P  E  G  V  I  V  R  T  I  V  R  L  D  E  T  C  R  E  F  R  N  A  A  A  I  M  G  N  S  A  L  Y  K  K  M  E  T  A  S  N  V  I  K  R  D  I  V  F  A  A  S  L  Y  I  T  G  V  *  L  G  P  E  A  L  I  S  F  A  I  L  K  D  L  T  I  H  M  L  Y  T  R  I  C  S  P  R  C  G  L  *  A  R  L  P  Y  N  L  A  N  L  Y  R  N  S  S  L  S  N  V  H  L  A  I  D  S  R  L  H  H  D  *  H  R  E  I  H  K  L  K  G  F  T  V  *  H  S  L  K  I  *  V  *  F  *  S  S  A  S </second_frame>
            <third_frame>   L  M  T  W  S  Q  K  R  Q  W  R  S  C  L  P  L  C  F  S  K  R  R  L  L  N  L  S  S  R  Q  S  F  L  R  L  K  R   : D  Y  M  K  L  Q  *  D  L  G  S  F  R  L  S  L  S  C  R  L  T  Q  R  S  M  P  K  R  T  L  S  L  V  W  L  K  W  Y  M  N  G  Q  R :   G  P  H  L  L  R  Y  V  N  S  Q  M  S  L  K  V  L  *  *  G  L  L  L  D  *  T  R  L  V  V  N  L  E  M  L  L  Q  L  W  A  T  L  H  C  T  R  K  W  K  L  H  L  M  *  S  S  A  I  S  C  L  Q  L  A  Y  I  L  P  E  F  D  *  V  R  K  P  *  F  H  L  Q  F  *  R  T  *  R  Y  T  C  C  T  L  E  Y  V  R  Q  G  V  D  F  E  Q  G  Y  P  T  I  W  L  I  C  T  E  I  Q  V  F  Q  M  Y  I  *  Q  S  T  V  D  Y  T  M  I  S  T  E  R  Y  I  N  L  K  D  L  L  Y  D  I  L  L  K  F  R  Y  D  F  E  V  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31474" stop="31586"/>
                    <exon start="33254" stop="33380"/>
                    <exon start="33535" stop="33747"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLHETAIRLGELQAQFKLPIDPKEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37427" PGL_stop="34214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37427" e_stop="36997"/>
            <exon e_start="35810" e_stop="35718"/>
            <exon e_start="34989" e_stop="34855"/>
            <exon e_start="34524" e_stop="34214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.972"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="37427" e_stop="36997" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36996" i_stop="35811" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35810" e_stop="35718" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35717" i_stop="34990" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34989" e_stop="34855" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34854" i_stop="34525" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="34524" e_stop="34214" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37427" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37306" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37305" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37305" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37289" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37250" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37245" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37225" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37172" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37172" stop="36997"/>
              <exon start="35810" stop="35718"/>
              <exon start="34989" stop="34855"/>
              <exon start="34524" stop="34453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTACCACCAACTTCCAAAACTCTCAAAATATCTTTGAAGGAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACG : ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAGCTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGATTCCTTCTGCTGTTGATGAG : GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACTGAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCTTCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAAACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGGTTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAATAGCATTATAAAGGATATCCTTTTCTTCCTGT</gDNA_template>
            <first_frame> Y  L  P  P  T  S  K  T  L  K  I  S  L  K  E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R :   Q  E  Q  D  L  S  K  W  R  I  M  R  T  L  L  I  *  E  L  I  I  L  L  I  Q  A  M  F  T  R  G  I  Q  L  L  M  I  G  F  L  L  L  L  M  R :   L  I  L  S  Q  E  N  H  T  E  V  I  T  E  I  E  S  L  I  K  T  V  S  A  Y  F  V  F  L  *  S  L  A  S  T  C  V  S  F  V  W  L  Y  L  N  N  M  L  Y  E  L  F  Q  T  I  L  M  K  N  L  Y  *  P  N  I  S  *  G  G  V  M  E  W  F  E  *  P  K  P  L  T  R  G  L  E  F  K  L  L  *  T  K  N  S  I  I  K  D  I  L  F  F  L  </first_frame>
            <second_frame>  T  Y  H  Q  L  P  K  L  S  K  Y  L  *  R  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H   : D  R  N  R  I  Y  Q  S  G  E  *  *  E  H  F  *  Y  R  S  *  L  Y  Y  *  S  K  P  C  L  Q  G  E  S  S  Y  *  *  L  D  S  F  C  C  *  *   : G  *  F  Y  L  R  K  T  T  Q  K  *  *  L  K  L  S  L  *  *  R  Q  Y  L  L  I  L  Y  F  C  E  A  W  L  Q  L  V  S  L  L  F  G  C  I  *  I  T  C  Y  M  N  Y  F  K  R  F  *  *  R  I  Y  I  S  Q  I  S  A  K  G  V  *  W  N  G  S  N  N  L  N  H  *  P  E  V  S  N  L  N  C  C  E  R  K  I  A  L  *  R  I  S  F  S  S  C </second_frame>
            <third_frame>   P  T  T  N  F  Q  N  S  Q  N  I  F  E  G  K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  :  T  G  T  G  F  I  K  V  E  N  N  E  N  T  F  N  I  G  A  D  Y  T  T  D  P  S  H  V  Y  K  G  N  P  A  T  N  D  W  I  P  S  A  V  D  E  :  V  N  F  I  S  G  K  P  H  R  S  D  N  *  N  *  V  F  D  K  D  S  I  C  L  F  C  I  S  V  K  L  G  F  N  L  C  L  F  C  L  V  V  F  E  *  H  A  I  *  I  I  S  N  D  F  N  E  E  F  I  L  A  K  Y  Q  L  R  G  C  D  G  M  V  R  I  T  *  T  I  N  Q  R  S  R  I  *  T  V  V  N  E  K  *  H  Y  K  G  Y  P  F  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37311" stop="36997"/>
                    <exon start="35810" stop="35718"/>
                    <exon start="34989" stop="34855"/>
                    <exon start="34524" stop="34483"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTTGTGFIKVENNENTFNIGADYTTDPSHVYKGNPATNDWIPSAVDEVNFISGKPHRSDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="76703" PGL_stop="73106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75200" e_stop="75105"/>
            <exon e_start="74383" e_stop="74303"/>
            <exon e_start="74024" e_stop="73938"/>
            <exon e_start="73459" e_stop="73106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75200" e_stop="75105" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="75104" i_stop="74384" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74383" e_stop="74303" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74302" i_stop="74025" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74024" e_stop="73938" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="73937" i_stop="73460" i_length="478"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="73459" e_stop="73106" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75200" stop="75105"/>
              <exon start="74383" stop="74303"/>
              <exon start="74024" stop="73938"/>
              <exon start="73459" stop="73106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75199" stop="75105"/>
              <exon start="74383" stop="74303"/>
              <exon start="74024" stop="73938"/>
              <exon start="73459" stop="73152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : GTAAAAGCCATGGAGCTAATTGATCAACTGGAAGTCACAAGGCGTGGACCATACAGCGGTGGATTTGGAGGAATTTCCTTTACCGGAGAAATGGACATTGCCTTAGCTTTGAGAACCATAGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGGATTGCTTATCTCCAAGCTGGAGCAGGTATAGTGGCTGATAGTGACCCAGCTGATGAGCAAAATGAATGCGAAAATAAAGCTGCAGCTCTTGTCCGTGCCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  V  K  A  M  E  L  I  D  Q  L  E  V  T  R  R  G  P  Y  S  G  G  F  G  G  I  S  F  T  G  E  M  D  I  A  L  A  L  R  T  I  V  F  P  T  G  T  R  Y  D  T  M  Y  S  Y  K  D  V  D  K  R  R  D  W  I  A  Y  L  Q  A  G  A  G  I  V  A  D  S  D  P  A  D  E  Q  N  E  C  E  N  K  A  A  A  L  V  R  A  I  D  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  R :   *  K  P  W  S  *  L  I  N  W  K  S  Q  G  V  D  H  T  A  V  D  L  E  E  F  P  L  P  E  K  W  T  L  P  *  L  *  E  P  *  Y  F  Q  L  E  R  V  T  T  L  C  T  R  T  R  M  S  T  S  D  E  I  G  L  L  I  S  K  L  E  Q  V  *  W  L  I  V  T  Q  L  M  S  K  M  N  A  K  I  K  L  Q  L  L  S  V  P  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : G  K  S  H  G  A  N  *  S  T  G  S  H  K  A  W  T  I  Q  R  W  I  W  R  N  F  L  Y  R  R  N  G  H  C  L  S  F  E  N  H  S  I  S  N  W  N  A  L  R  H  Y  V  L  V  Q  G  C  R  Q  A  T  R  L  D  C  L  S  P  S  W  S  R  Y  S  G  *  *  *  P  S  *  *  A  K  *  M  R  K  *  S  C  S  S  C  P  C  H  *  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75200" stop="75105"/>
                    <exon start="74383" stop="74303"/>
                    <exon start="74024" stop="73938"/>
                    <exon start="73459" stop="73106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPKVKAMELIDQLEVTRRGPYSGGFGGISFTGEMDIALALRTIVFPTGTRYDTMYSYKDVDKRRDWIAYLQAGAGIVADSDPADEQNECENKAAALVRAIDFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76703" e_stop="76653"/>
            <exon e_start="75981" e_stop="75866"/>
            <exon e_start="75772" e_stop="75526"/>
            <exon e_start="75447" e_stop="75391"/>
            <exon e_start="75257" e_stop="75105"/>
            <exon e_start="74383" e_stop="74303"/>
            <exon e_start="74024" e_stop="73938"/>
            <exon e_start="73656" e_stop="73652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.885" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.612" e_score="0.996"/>
          <exon-intron don_prob="0.993" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.989"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76703" e_stop="76653" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.625">
            <gDNA_intron_boundary i_start="76652" i_stop="75982" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="75981" e_stop="75866" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.885">
            <gDNA_intron_boundary i_start="75865" i_stop="75773" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="75772" e_stop="75526" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.612">
            <gDNA_intron_boundary i_start="75525" i_stop="75448" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75447" e_stop="75391" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.942">
            <gDNA_intron_boundary i_start="75390" i_stop="75258" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75257" e_stop="75105" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="75104" i_stop="74384" i_length="721"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74383" e_stop="74303" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74302" i_stop="74025" i_length="278"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="74024" e_stop="73938" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="73937" i_stop="73657" i_length="281"/>
          </intron>
          <exon e_serial="8" e_score="0.400">
            <gDNA_exon_boundary e_start="73656" e_stop="73652" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76703" stop="76653"/>
              <exon start="75981" stop="75866"/>
              <exon start="75772" stop="75526"/>
              <exon start="75447" stop="75391"/>
              <exon start="75257" stop="75105"/>
              <exon start="74383" stop="74303"/>
              <exon start="74024" stop="73938"/>
              <exon start="73656" stop="73652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATCTAGGACTTTATGATGATGTAATTGTGTTTGATCATGTGGAAAAG : AAAGCATTTGTCATACATTGGGTGCGGTTAGATCGCTTTGCTTCAGTAGAGGAGGCCTACAATGATGGTACAACCAGATTAGAAGCTTTGTTGTCTAGAGTACATGATATTGTACC : TCCTACACTGGCTTCAGGGTCGATAAAACTTCATACTAGTCTATTTGGTACTTCATTGAAAAATTCAACCATGACAAGCGAAGACTACCAGAAGGCTGTTTTAAAGGCCAAGGAACATATCCTTGCTGGGGACATTTTCCAAATTGTTCTTAGTCAACGTTTTGAAAGACGAACCTTTGCAGATCCATTTGAAGTATACAGAGCACTAAGAATCGTAAATCCAAGTCCTTATATGACTTATCTACAG : GCTCGGGGGTGTATACTTGTTGCTTCTAGTCCTGAAATTCTTACTCGAGTGAAGAAG : AAAACAGTTACCAATCGGCCCCTAGCAGGGACTATTAGAAGAGGTAAGACACTTGAGGAAGATTATATGCTGGAAAATCAACTTTTGCACGACGAGAAACAGTGTGCAGAGCATATAATGCTGGTTGACTTGGGAAGAAATGATGTTGGAAAG : GTCTCTAAGCCTGGTTCGGTGAAAGTTGAGAAACTAATGAACATTGAACGGTATTCCCATGTCATGCACATCAGCTCTACG : GTTACTGGAGAGCTACTTGACCATTTGAGTAGCTGGGATGCTCTGCGTGCAGCCCTGCCTGTTGGAACCGTTAGTGGAGCGCCTAAG : TGAAG</gDNA_template>
            <first_frame> L  H  L  G  L  Y  D  D  V  I  V  F  D  H  V  E  K  :  K  A  F  V  I  H  W  V  R  L  D  R  F  A  S  V  E  E  A  Y  N  D  G  T  T  R  L  E  A  L  L  S  R  V  H  D  I  V  P :   P  T  L  A  S  G  S  I  K  L  H  T  S  L  F  G  T  S  L  K  N  S  T  M  T  S  E  D  Y  Q  K  A  V  L  K  A  K  E  H  I  L  A  G  D  I  F  Q  I  V  L  S  Q  R  F  E  R  R  T  F  A  D  P  F  E  V  Y  R  A  L  R  I  V  N  P  S  P  Y  M  T  Y  L  Q  :  A  R  G  C  I  L  V  A  S  S  P  E  I  L  T  R  V  K  K  :  K  T  V  T  N  R  P  L  A  G  T  I  R  R  G  K  T  L  E  E  D  Y  M  L  E  N  Q  L  L  H  D  E  K  Q  C  A  E  H  I  M  L  V  D  L  G  R  N  D  V  G  K  :  V  S  K  P  G  S  V  K  V  E  K  L  M  N  I  E  R  Y  S  H  V  M  H  I  S  S  T  :  V  T  G  E  L  L  D  H  L  S  S  W  D  A  L  R  A  A  L  P  V  G  T  V  S  G  A  P  K  :  *   </first_frame>
            <second_frame>  F  I  *  D  F  M  M  M  *  L  C  L  I  M  W  K  R :   K  H  L  S  Y  I  G  C  G  *  I  A  L  L  Q  *  R  R  P  T  M  M  V  Q  P  D  *  K  L  C  C  L  E  Y  M  I  L  Y   : L  L  H  W  L  Q  G  R  *  N  F  I  L  V  Y  L  V  L  H  *  K  I  Q  P  *  Q  A  K  T  T  R  R  L  F  *  R  P  R  N  I  S  L  L  G  T  F  S  K  L  F  L  V  N  V  L  K  D  E  P  L  Q  I  H  L  K  Y  T  E  H  *  E  S  *  I  Q  V  L  I  *  L  I  Y  R :   L  G  G  V  Y  L  L  L  L  V  L  K  F  L  L  E  *  R  R :   K  Q  L  P  I  G  P  *  Q  G  L  L  E  E  V  R  H  L  R  K  I  I  C  W  K  I  N  F  C  T  T  R  N  S  V  Q  S  I  *  C  W  L  T  W  E  E  M  M  L  E  R :   S  L  S  L  V  R  *  K  L  R  N  *  *  T  L  N  G  I  P  M  S  C  T  S  A  L  R :   L  L  E  S  Y  L  T  I  *  V  A  G  M  L  C  V  Q  P  C  L  L  E  P  L  V  E  R  L  S :   E  </second_frame>
            <third_frame>   S  S  R  T  L  *  *  C  N  C  V  *  S  C  G  K   : E  S  I  C  H  T  L  G  A  V  R  S  L  C  F  S  R  G  G  L  Q  *  W  Y  N  Q  I  R  S  F  V  V  *  S  T  *  Y  C  T  :  S  Y  T  G  F  R  V  D  K  T  S  Y  *  S  I  W  Y  F  I  E  K  F  N  H  D  K  R  R  L  P  E  G  C  F  K  G  Q  G  T  Y  P  C  W  G  H  F  P  N  C  S  *  S  T  F  *  K  T  N  L  C  R  S  I  *  S  I  Q  S  T  K  N  R  K  S  K  S  L  Y  D  L  S  T   : G  S  G  V  Y  T  C  C  F  *  S  *  N  S  Y  S  S  E  E   : E  N  S  Y  Q  S  A  P  S  R  D  Y  *  K  R  *  D  T  *  G  R  L  Y  A  G  K  S  T  F  A  R  R  E  T  V  C  R  A  Y  N  A  G  *  L  G  K  K  *  C  W  K   : G  L  *  A  W  F  G  E  S  *  E  T  N  E  H  *  T  V  F  P  C  H  A  H  Q  L  Y   : G  Y  W  R  A  T  *  P  F  E  *  L  G  C  S  A  C  S  P  A  C  W  N  R  *  W  S  A  *   : V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76703" stop="76653"/>
                    <exon start="75981" stop="75866"/>
                    <exon start="75772" stop="75526"/>
                    <exon start="75447" stop="75391"/>
                    <exon start="75257" stop="75105"/>
                    <exon start="74383" stop="74303"/>
                    <exon start="74024" stop="73938"/>
                    <exon start="73656" stop="73654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLGLYDDVIVFDHVEKKAFVIHWVRLDRFASVEEAYNDGTTRLEALLSRVHDIVPPTLASGSIKLHTSLFGTSLKNSTMTSEDYQKAVLKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKKTVTNRPLAGTIRRGKTLEEDYMLENQLLHDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDHLSSWDALRAALPVGTVSGAPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="84542" PGL_stop="83858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84542" e_stop="83858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="84542" e_stop="83858" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84542" stop="83868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84439" stop="83858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84439" stop="83870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84438" stop="83860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGGTATCACTTCTCTCACCACTTATACTAAAGTTAGTATATTTTCTTAAAAATATATATATAATTGTGTGGTGTTCGAGTCAGTTTGCGTTAAATCATCTTTGATTTCGAGATGTCGGCAAGAGGATGTGAAGGAGTGAGCGTGGTGAAGCCAGAGATGACCAAGAATACAAAGATAGCAAGCAAGTTTCAAAAGCAAAACTCTACAAAGAGTGTTGTTGATGGTACTACAAATAATGCAAGGAGTACCACCACCACAACAAGTTGTAGCTTCAAGATGCCTAATAGATCCCAATTATCCCCTATTAAGATTTTCAAACAACTTGGAGGAAAAATGGTTGCACTTATGAAGATGGTATCTTCTTCAAAGAGAAGTTGTAGGAAAGTTACTAATTCGTCAGAGAGAGCAACAATTTCTGCTAAGCCAACCGCTACCTTAAATATTGACTCACATAGAGCGGAGGCAATTGATGATTGTATTCAATTCATCAACTTGTCTTCTTCTTTGCCTAGATCTAATTCAGTGTCATAAGAGATCGGAAAAAATCTCTTGATAAGAAGCGTTTTATCGTGTTATTTATATTAATTGACCACTTTTGTATGGTTTTGTATCTATAAGTAGATTATATTTTTAACATTAGACGTGTGATTTGAATAGAATAATTATTTTGAACGACTTTCTA</gDNA_template>
            <first_frame> Q  R  Y  H  F  S  H  H  L  Y  *  S  *  Y  I  F  L  K  I  Y  I  *  L  C  G  V  R  V  S  L  R  *  I  I  F  D  F  E  M  S  A  R  G  C  E  G  V  S  V  V  K  P  E  M  T  K  N  T  K  I  A  S  K  F  Q  K  Q  N  S  T  K  S  V  V  D  G  T  T  N  N  A  R  S  T  T  T  T  T  S  C  S  F  K  M  P  N  R  S  Q  L  S  P  I  K  I  F  K  Q  L  G  G  K  M  V  A  L  M  K  M  V  S  S  S  K  R  S  C  R  K  V  T  N  S  S  E  R  A  T  I  S  A  K  P  T  A  T  L  N  I  D  S  H  R  A  E  A  I  D  D  C  I  Q  F  I  N  L  S  S  S  L  P  R  S  N  S  V  S  *  E  I  G  K  N  L  L  I  R  S  V  L  S  C  Y  L  Y  *  L  T  T  F  V  W  F  C  I  Y  K  *  I  I  F  L  T  L  D  V  *  F  E  *  N  N  Y  F  E  R  L  S  </first_frame>
            <second_frame>  K  G  I  T  S  L  T  T  Y  T  K  V  S  I  F  S  *  K  Y  I  Y  N  C  V  V  F  E  S  V  C  V  K  S  S  L  I  S  R  C  R  Q  E  D  V  K  E  *  A  W  *  S  Q  R  *  P  R  I  Q  R  *  Q  A  S  F  K  S  K  T  L  Q  R  V  L  L  M  V  L  Q  I  M  Q  G  V  P  P  P  Q  Q  V  V  A  S  R  C  L  I  D  P  N  Y  P  L  L  R  F  S  N  N  L  E  E  K  W  L  H  L  *  R  W  Y  L  L  Q  R  E  V  V  G  K  L  L  I  R  Q  R  E  Q  Q  F  L  L  S  Q  P  L  P  *  I  L  T  H  I  E  R  R  Q  L  M  I  V  F  N  S  S  T  C  L  L  L  C  L  D  L  I  Q  C  H  K  R  S  E  K  I  S  *  *  E  A  F  Y  R  V  I  Y  I  N  *  P  L  L  Y  G  F  V  S  I  S  R  L  Y  F  *  H  *  T  C  D  L  N  R  I  I  I  L  N  D  F  L </second_frame>
            <third_frame>   K  V  S  L  L  S  P  L  I  L  K  L  V  Y  F  L  K  N  I  Y  I  I  V  W  C  S  S  Q  F  A  L  N  H  L  *  F  R  D  V  G  K  R  M  *  R  S  E  R  G  E  A  R  D  D  Q  E  Y  K  D  S  K  Q  V  S  K  A  K  L  Y  K  E  C  C  *  W  Y  Y  K  *  C  K  E  Y  H  H  H  N  K  L  *  L  Q  D  A  *  *  I  P  I  I  P  Y  *  D  F  Q  T  T  W  R  K  N  G  C  T  Y  E  D  G  I  F  F  K  E  K  L  *  E  S  Y  *  F  V  R  E  S  N  N  F  C  *  A  N  R  Y  L  K  Y  *  L  T  *  S  G  G  N  *  *  L  Y  S  I  H  Q  L  V  F  F  F  A  *  I  *  F  S  V  I  R  D  R  K  K  S  L  D  K  K  R  F  I  V  L  F  I  L  I  D  H  F  C  M  V  L  Y  L  *  V  D  Y  I  F  N  I  R  R  V  I  *  I  E  *  L  F  *  T  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84446" stop="84009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIFDFEMSARGCEGVSVVKPEMTKNTKIASKFQKQNSTKSVVDGTTNNARSTTTTTSCSFKMPNRSQLSPIKIFKQLGGKMVALMKMVSSSKRSCRKVTNSSERATISAKPTATLNIDSHRAEAIDDCIQFINLSSSLPRSNSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="96778" PGL_stop="102171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96778" e_stop="96817"/>
            <exon e_start="98343" e_stop="98664"/>
            <exon e_start="98909" e_stop="99036"/>
            <exon e_start="99673" e_stop="100499"/>
            <exon e_start="100633" e_stop="101315"/>
            <exon e_start="101422" e_stop="101621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.509" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.413" e_score="0.984"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96778" e_stop="96817" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="96818" i_stop="98342" i_length="1525"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98343" e_stop="98664" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.876" acc_prob="0.953">
            <gDNA_intron_boundary i_start="98665" i_stop="98908" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98909" e_stop="99036" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.509" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99037" i_stop="99672" i_length="636"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="99673" e_stop="100499" e_length="827"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100500" i_stop="100632" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="100633" e_stop="101315" e_length="683"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.413">
            <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="101422" e_stop="101621" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96778" stop="96817"/>
              <exon start="98343" stop="98664"/>
              <exon start="98909" stop="99036"/>
              <exon start="99673" stop="100499"/>
              <exon start="100633" stop="101315"/>
              <exon start="101422" stop="101621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96784" stop="96817"/>
              <exon start="98343" stop="98664"/>
              <exon start="98909" stop="99036"/>
              <exon start="99673" stop="99748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96788" stop="96817"/>
              <exon start="98343" stop="98664"/>
              <exon start="98909" stop="99036"/>
              <exon start="99673" stop="99701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98350" stop="98664"/>
              <exon start="98909" stop="99036"/>
              <exon start="99673" stop="100076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="98664"/>
              <exon start="98909" stop="99036"/>
              <exon start="99673" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98374" stop="98664"/>
              <exon start="98909" stop="99036"/>
              <exon start="99673" stop="99948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98923" stop="99036"/>
              <exon start="99673" stop="100457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98924" stop="99036"/>
              <exon start="99673" stop="100076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99737" stop="100167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100842" stop="101305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100976" stop="101315"/>
              <exon start="101422" stop="101611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101008" stop="101315"/>
              <exon start="101422" stop="101619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTTCTCATCATTTACAGCTCTAATTCATTTGCTTCAG : ACGTTGATTGGAAGATGGCGTCTGTCCAAACTGCTTTGACATCACTCCTATGCAAGAAAGGGAACAATAATCCACAAGTAAATGTTCCAAGAAGTTCCTTCTTGCCAGGGTTTGATTTGACAGGGCAAGTTGCGGTTACAGGGAGAAGGGAAACGCGTTTCAATTCTTTTTCAAGCCCGAGAGCAACACTTACCTTTGATCCTCCCAGTACTGATAATAAAGAGAAGACAAAGCCAAAGCACACTGTTGATCCTAATGCTCCTGATTTCCTGCCCCTTCCACCATTCGAACAATGCTTTCCGAAAAGCTCCAAGGAATACAG : TGAAGTTATGCATGAAGAAACTGGTCATGTACTCAAAGTCCCATTTCGACGTATCCATCTTTCCGGGGATGAACCACATTTCGACACTTATGATACCAGTGGTCCTCAGGGTGTTAACCCGCGCGTTG : GACTTCCCAAGCTGCGCACGGAGTGGATTAACAGGAGGGAGAAGTTAGGAGGACCAAGGTATACTCAAATGTTCTATGCTAAGCAGGGAATCATAACTGAGGAAATGGTGTACTGTGCTGCTCGTGAGAAGATGGATCCGGAATTTGTGAGGTCAGAAGTTGCTCGGGGCCGTGCAATCATCCCTTCAAACAAGAAGCACCCTGAGTTGGAGCCAATGATAGTAGGAAGAAAGTTCTTAGTGAAAGTCAATGCCAACATCGGGAACTCTGCTGTTGTAAGCTCGATTGAAGAAGAAGTTCACAAGCTTCAATGGGCAACAATGTGGGGTGCAGATACGATTATGGATCTCTCTACTGGTCGTCACATCCACGAGACTCGTGAGTGGATCTTGCGTAATTCTGCTGTACCAGTAGGCACTGTGCCAATTTACCAAGCACTAGAAAAAGTAAACGGGATTGCTGAGAATCTTAGTTGGGAAGTGTTTAGGGAGACCTTAATTGAACAAGCTGAGCAAGGAGTTGATTACTTCACAATCCATGCCGGAGTCCTTCTCAGGTACATCCCACTGACAGCAAAACGGATGACCGGAATTGTTTCTCGTGGAGGCTCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAGGAGAATTTCGCTTATGAACATTGGGATGACATACTTGACATCTGTAATCAGTACGATATATCGTTATCAATTGGTGATGGACTGAGACCTGGTTCAATTTATGATGCAAATGACACCGCTCAGTTTGCTGAGCTCTTGACTCAAGGGGAGCTGACTCGCCGAGCTTGGGAAAAGGATGTACAG : GTTATGAATGAAGGACCTGGACATGTACCAATGCATAAGATTCCCGAGAACATGCAGAAACAGCTAGAGTGGTGTAATGAAGCACCATTTTACACTCTTGGACCATTGACAACTGATATAGCTCCCGGATATGATCATATCACCTCAGCTATCGGTGCAGCCAATATAGGAGCACTCGGGACTGCACTTCTGTGTTACGTCACTCCAAAAGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG : GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAGGTAAGTATCTAGTTTGGTACTGTTAAATAAACTGAGACAACAGCCTTGTTCAATGAAACTCTCCTTTGTTAGTAATGAGAAAAACGCGTATTTTCTT</gDNA_template>
            <first_frame> P  L  L  I  I  Y  S  S  N  S  F  A  S   : D  V  D  W  K  M  A  S  V  Q  T  A  L  T  S  L  L  C  K  K  G  N  N  N  P  Q  V  N  V  P  R  S  S  F  L  P  G  F  D  L  T  G  Q  V  A  V  T  G  R  R  E  T  R  F  N  S  F  S  S  P  R  A  T  L  T  F  D  P  P  S  T  D  N  K  E  K  T  K  P  K  H  T  V  D  P  N  A  P  D  F  L  P  L  P  P  F  E  Q  C  F  P  K  S  S  K  E  Y  S :   E  V  M  H  E  E  T  G  H  V  L  K  V  P  F  R  R  I  H  L  S  G  D  E  P  H  F  D  T  Y  D  T  S  G  P  Q  G  V  N  P  R  V   : G  L  P  K  L  R  T  E  W  I  N  R  R  E  K  L  G  G  P  R  Y  T  Q  M  F  Y  A  K  Q  G  I  I  T  E  E  M  V  Y  C  A  A  R  E  K  M  D  P  E  F  V  R  S  E  V  A  R  G  R  A  I  I  P  S  N  K  K  H  P  E  L  E  P  M  I  V  G  R  K  F  L  V  K  V  N  A  N  I  G  N  S  A  V  V  S  S  I  E  E  E  V  H  K  L  Q  W  A  T  M  W  G  A  D  T  I  M  D  L  S  T  G  R  H  I  H  E  T  R  E  W  I  L  R  N  S  A  V  P  V  G  T  V  P  I  Y  Q  A  L  E  K  V  N  G  I  A  E  N  L  S  W  E  V  F  R  E  T  L  I  E  Q  A  E  Q  G  V  D  Y  F  T  I  H  A  G  V  L  L  R  Y  I  P  L  T  A  K  R  M  T  G  I  V  S  R  G  G  S  I  H  A  K  W  C  L  A  Y  H  K  E  N  F  A  Y  E  H  W  D  D  I  L  D  I  C  N  Q  Y  D  I  S  L  S  I  G  D  G  L  R  P  G  S  I  Y  D  A  N  D  T  A  Q  F  A  E  L  L  T  Q  G  E  L  T  R  R  A  W  E  K  D  V  Q  :  V  M  N  E  G  P  G  H  V  P  M  H  K  I  P  E  N  M  Q  K  Q  L  E  W  C  N  E  A  P  F  Y  T  L  G  P  L  T  T  D  I  A  P  G  Y  D  H  I  T  S  A  I  G  A  A  N  I  G  A  L  G  T  A  L  L  C  Y  V  T  P  K  E  H  L  G  L  P  N  R  D  D  V  K  T  G  V  I  S  Y  K  I  A  A  H  A  A  D  L  A  K  G  H  P  L  S  Q  A  W  D  D  A  L  S  K  A  R  F  E  F  R  W  M  D  Q  F  A  L  S  L  D  P  V  T  A  M  S  F  H  D  E  T  L  P  A  D  G  A  K  V  A  H  F  C  S  M  C  G  P  K  F  C  S  M  K  I  T  E  D  I  R  K  Y  A  E  N  H  G  Y  G  N  A  E  E  A  I  Q  Q  G  M  D  A  M  S  A  A  F  Q  A  A  K  K  T  I  S  G  E  Q  H  G  E  V  G  G  E  I  Y  L  P  E  N  Y  I  N  S  L  K  S  Q  R :   N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  V  S  I  *  F  G  T  V  K  *  T  E  T  T  A  L  F  N  E  T  L  L  C  *  *  *  E  K  R  V  F  S  </first_frame>
            <second_frame>  L  F  S  S  F  T  A  L  I  H  L  L  Q  :  T  L  I  G  R  W  R  L  S  K  L  L  *  H  H  S  Y  A  R  K  G  T  I  I  H  K  *  M  F  Q  E  V  P  S  C  Q  G  L  I  *  Q  G  K  L  R  L  Q  G  E  G  K  R  V  S  I  L  F  Q  A  R  E  Q  H  L  P  L  I  L  P  V  L  I  I  K  R  R  Q  S  Q  S  T  L  L  I  L  M  L  L  I  S  C  P  F  H  H  S  N  N  A  F  R  K  A  P  R  N  T   : V  K  L  C  M  K  K  L  V  M  Y  S  K  S  H  F  D  V  S  I  F  P  G  M  N  H  I  S  T  L  M  I  P  V  V  L  R  V  L  T  R  A  L  :  D  F  P  S  C  A  R  S  G  L  T  G  G  R  S  *  E  D  Q  G  I  L  K  C  S  M  L  S  R  E  S  *  L  R  K  W  C  T  V  L  L  V  R  R  W  I  R  N  L  *  G  Q  K  L  L  G  A  V  Q  S  S  L  Q  T  R  S  T  L  S  W  S  Q  *  *  *  E  E  S  S  *  *  K  S  M  P  T  S  G  T  L  L  L  *  A  R  L  K  K  K  F  T  S  F  N  G  Q  Q  C  G  V  Q  I  R  L  W  I  S  L  L  V  V  T  S  T  R  L  V  S  G  S  C  V  I  L  L  Y  Q  *  A  L  C  Q  F  T  K  H  *  K  K  *  T  G  L  L  R  I  L  V  G  K  C  L  G  R  P  *  L  N  K  L  S  K  E  L  I  T  S  Q  S  M  P  E  S  F  S  G  T  S  H  *  Q  Q  N  G  *  P  E  L  F  L  V  E  A  Q  F  M  Q  S  G  A  *  L  I  T  R  R  I  S  L  M  N  I  G  M  T  Y  L  T  S  V  I  S  T  I  Y  R  Y  Q  L  V  M  D  *  D  L  V  Q  F  M  M  Q  M  T  P  L  S  L  L  S  S  *  L  K  G  S  *  L  A  E  L  G  K  R  M  Y  R :   L  *  M  K  D  L  D  M  Y  Q  C  I  R  F  P  R  T  C  R  N  S  *  S  G  V  M  K  H  H  F  T  L  L  D  H  *  Q  L  I  *  L  P  D  M  I  I  S  P  Q  L  S  V  Q  P  I  *  E  H  S  G  L  H  F  C  V  T  S  L  Q  K  S  I  L  V  C  L  I  A  M  T  *  R  Q  V  *  Y  H  I  R  *  L  L  M  Q  L  I  L  Q  K  V  T  R  Y  L  K  P  G  M  M  H  L  A  R  Q  D  L  S  S  D  G  W  T  N  S  L  Y  H  W  T  P  L  L  Q  C  P  F  T  T  K  L  Y  Q  P  M  G  L  K  W  H  I  S  A  L  C  A  G  L  S  F  A  P  *  K  *  P  K  I  *  E  S  M  L  K  I  M  V  M  E  M  Q  R  K  P  F  S  R  A  W  M  L  *  V  Q  R  F  K  L  Q  K  K  P  L  V  G  N  N  T  V  R  L  A  V  R  S  T  C  Q  R  I  T  S  T  L  *  R  A  K   : G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  R  *  V  S  S  L  V  L  L  N  K  L  R  Q  Q  P  C  S  M  K  L  S  F  V  S  N  E  K  N  A  Y  F  L </second_frame>
            <third_frame>   S  S  H  H  L  Q  L  *  F  I  C  F  R :   R  *  L  E  D  G  V  C  P  N  C  F  D  I  T  P  M  Q  E  R  E  Q  *  S  T  S  K  C  S  K  K  F  L  L  A  R  V  *  F  D  R  A  S  C  G  Y  R  E  K  G  N  A  F  Q  F  F  F  K  P  E  S  N  T  Y  L  *  S  S  Q  Y  *  *  *  R  E  D  K  A  K  A  H  C  *  S  *  C  S  *  F  P  A  P  S  T  I  R  T  M  L  S  E  K  L  Q  G  I  Q  :  *  S  Y  A  *  R  N  W  S  C  T  Q  S  P  I  S  T  Y  P  S  F  R  G  *  T  T  F  R  H  L  *  Y  Q  W  S  S  G  C  *  P  A  R  W :   T  S  Q  A  A  H  G  V  D  *  Q  E  G  E  V  R  R  T  K  V  Y  S  N  V  L  C  *  A  G  N  H  N  *  G  N  G  V  L  C  C  S  *  E  D  G  S  G  I  C  E  V  R  S  C  S  G  P  C  N  H  P  F  K  Q  E  A  P  *  V  G  A  N  D  S  R  K  K  V  L  S  E  S  Q  C  Q  H  R  E  L  C  C  C  K  L  D  *  R  R  S  S  Q  A  S  M  G  N  N  V  G  C  R  Y  D  Y  G  S  L  Y  W  S  S  H  P  R  D  S  *  V  D  L  A  *  F  C  C  T  S  R  H  C  A  N  L  P  S  T  R  K  S  K  R  D  C  *  E  S  *  L  G  S  V  *  G  D  L  N  *  T  S  *  A  R  S  *  L  L  H  N  P  C  R  S  P  S  Q  V  H  P  T  D  S  K  T  D  D  R  N  C  F  S  W  R  L  N  S  C  K  V  V  L  S  L  S  Q  G  E  F  R  L  *  T  L  G  *  H  T  *  H  L  *  S  V  R  Y  I  V  I  N  W  *  W  T  E  T  W  F  N  L  *  C  K  *  H  R  S  V  C  *  A  L  D  S  R  G  A  D  S  P  S  L  G  K  G  C  T   : G  Y  E  *  R  T  W  T  C  T  N  A  *  D  S  R  E  H  A  E  T  A  R  V  V  *  *  S  T  I  L  H  S  W  T  I  D  N  *  Y  S  S  R  I  *  S  Y  H  L  S  Y  R  C  S  Q  Y  R  S  T  R  D  C  T  S  V  L  R  H  S  K  R  A  S  W  S  A  *  S  R  *  R  E  D  R  C  N  I  I  *  D  S  C  S  C  S  *  S  C  K  R  S  P  A  I  S  S  L  G  *  C  T  *  Q  G  K  I  *  V  Q  M  D  G  P  I  R  F  I  I  G  P  R  Y  C  N  V  L  S  R  R  N  F  T  S  R  W  G  *  S  G  T  F  L  L  Y  V  R  A  *  V  L  L  H  E  N  N  R  R  Y  K  K  V  C  *  K  S  W  L  W  K  C  R  G  S  H  S  A  G  H  G  C  Y  E  C  S  V  S  S  C  K  K  N  H  *  W  G  T  T  R  *  G  W  R  *  D  L  L  A  R  E  L  H  Q  L  F  E  E  P  K  :  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L  G  K  Y  L  V  W  Y  C  *  I  N  *  D  N  S  L  V  Q  *  N  S  P  L  L  V  M  R  K  T  R  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96778" stop="96817"/>
                    <exon start="98343" stop="98664"/>
                    <exon start="98909" stop="99036"/>
                    <exon start="99673" stop="100499"/>
                    <exon start="100633" stop="101315"/>
                    <exon start="101422" stop="101431"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2007</number_coding_nucleotides>
                  <number_encoded_amino_acids>669</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLIIYSSNSFASDVDWKMASVQTALTSLLCKKGNNNPQVNVPRSSFLPGFDLTGQVAVTGRRETRFNSFSSPRATLTFDPPSTDNKEKTKPKHTVDPNAPDFLPLPPFEQCFPKSSKEYSEVMHEETGHVLKVPFRRIHLSGDEPHFDTYDTSGPQGVNPRVGLPKLRTEWINRREKLGGPRYTQMFYAKQGIITEEMVYCAAREKMDPEFVRSEVARGRAIIPSNKKHPELEPMIVGRKFLVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKIAAHAADLAKGHPLSQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAENHGYGNAEEAIQQGMDAMSAAFQAAKKTISGEQHGEVGGEIYLPENYINSLKSQRNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100842" e_stop="101315"/>
            <exon e_start="101422" e_stop="101524"/>
            <exon e_start="101688" e_stop="101957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.413" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.479" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100842" e_stop="101315" e_length="474"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.413">
            <gDNA_intron_boundary i_start="101316" i_stop="101421" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101422" e_stop="101524" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.479">
            <gDNA_intron_boundary i_start="101525" i_stop="101687" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101688" e_stop="101957" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100842" stop="101305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100873" stop="101315"/>
              <exon start="101422" stop="101524"/>
              <exon start="101688" stop="101957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100874" stop="101315"/>
              <exon start="101422" stop="101524"/>
              <exon start="101688" stop="101869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCATCTTGGTCTGCCTAATCGCGATGACGTGAAGACAGGTGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTTGCAAAAGGTCACCCGCTATCTCAAGCCTGGGATGATGCACTTAGCAAGGCAAGATTTGAGTTCAGATGGATGGACCAATTCGCTTTATCATTGGACCCCGTTACTGCAATGTCCTTTCACGACGAAACTTTACCAGCCGATGGGGCTAAAGTGGCACATTTCTGCTCTATGTGCGGGCCTAAGTTTTGCTCCATGAAAATAACCGAAGATATAAGAAAGTATGCTGAAAATCATGGTTATGGAAATGCAGAGGAAGCCATTCAGCAGGGCATGGATGCTATGAGTGCAGCGTTTCAAGCTGCAAAAAAAACCATTAGTGGGGAACAACACGGTGAGGTTGGCGGTGAGATCTACTTGCCAGAGAATTACATCAACTCTTTGAAGAGCCAAAG : GAATGTGTAAAGATCGAAAACTGGCTCACAGATTTCTGAAGTGATCACAACTCCATCGGCCAGTCAAGGAGGCGGTAGTAGGAGCCTCATTATCAAGTGTTAG : CTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACA</gDNA_template>
            <first_frame> R  A  S  W  S  A  *  S  R  *  R  E  D  R  C  N  I  I  *  D  S  C  S  C  S  *  S  C  K  R  S  P  A  I  S  S  L  G  *  C  T  *  Q  G  K  I  *  V  Q  M  D  G  P  I  R  F  I  I  G  P  R  Y  C  N  V  L  S  R  R  N  F  T  S  R  W  G  *  S  G  T  F  L  L  Y  V  R  A  *  V  L  L  H  E  N  N  R  R  Y  K  K  V  C  *  K  S  W  L  W  K  C  R  G  S  H  S  A  G  H  G  C  Y  E  C  S  V  S  S  C  K  K  N  H  *  W  G  T  T  R  *  G  W  R  *  D  L  L  A  R  E  L  H  Q  L  F  E  E  P  K  :  E  C  V  K  I  E  N  W  L  T  D  F  *  S  D  H  N  S  I  G  Q  S  R  R  R  *  *  E  P  H  Y  Q  V  L   : A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  </first_frame>
            <second_frame>  E  H  L  G  L  P  N  R  D  D  V  K  T  G  V  I  S  Y  K  I  A  A  H  A  A  D  L  A  K  G  H  P  L  S  Q  A  W  D  D  A  L  S  K  A  R  F  E  F  R  W  M  D  Q  F  A  L  S  L  D  P  V  T  A  M  S  F  H  D  E  T  L  P  A  D  G  A  K  V  A  H  F  C  S  M  C  G  P  K  F  C  S  M  K  I  T  E  D  I  R  K  Y  A  E  N  H  G  Y  G  N  A  E  E  A  I  Q  Q  G  M  D  A  M  S  A  A  F  Q  A  A  K  K  T  I  S  G  E  Q  H  G  E  V  G  G  E  I  Y  L  P  E  N  Y  I  N  S  L  K  S  Q  R :   N  V  *  R  S  K  T  G  S  Q  I  S  E  V  I  T  T  P  S  A  S  Q  G  G  G  S  R  S  L  I  I  K  C  *  :  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T </second_frame>
            <third_frame>   S  I  L  V  C  L  I  A  M  T  *  R  Q  V  *  Y  H  I  R  *  L  L  M  Q  L  I  L  Q  K  V  T  R  Y  L  K  P  G  M  M  H  L  A  R  Q  D  L  S  S  D  G  W  T  N  S  L  Y  H  W  T  P  L  L  Q  C  P  F  T  T  K  L  Y  Q  P  M  G  L  K  W  H  I  S  A  L  C  A  G  L  S  F  A  P  *  K  *  P  K  I  *  E  S  M  L  K  I  M  V  M  E  M  Q  R  K  P  F  S  R  A  W  M  L  *  V  Q  R  F  K  L  Q  K  K  P  L  V  G  N  N  T  V  R  L  A  V  R  S  T  C  Q  R  I  T  S  T  L  *  R  A  K   : G  M  C  K  D  R  K  L  A  H  R  F  L  K  *  S  Q  L  H  R  P  V  K  E  A  V  V  G  A  S  L  S  S  V  S :   F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100843" stop="101315"/>
                    <exon start="101422" stop="101431"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHLGLPNRDDVKTGVISYKIAAHAADLAKGHPLSQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAENHGYGNAEEAIQQGMDAMSAAFQAAKKTISGEQHGEVGGEIYLPENYINSLKSQRNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101678" e_stop="102171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="101678" e_stop="102171" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101678" stop="102171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTGTCAGCTTCAAATGCTGACTGATCAGGCTGAGAAAGTCCCTTTGAACCTGAACGGGATAATTCCTGCGTAGGGAGCGTGCAATTTCTTTTTTCTTGCTTGCACAGGGATGGCGATTCTCCAAAATGGTTGAAAATTCAAAATTAATCTGATCCTGCTCTTTGCCAGGACCAGTTTATTCACTGTCTATTCAAGACACCATCTTGTATTGTTTGTTTTTTTGGTGTCCTGTACCGCATTGAGGCCTGACTAAATACAGATTCCCGCACTCTGTACATAACAGAGCTCGAATTCGACACCTTTGATTGGTAGTAAAGGGGTATTTATCACTCCATCACGACCCTTGTTGGTAAGGCATATTCGTGTATGCCTCTGAGACGCGATTGGTTACTTACAATTGACCAATTTTCTCATGGTTAGTCTAGCTTTGGTTGGACTATTGAAACATTCAGTAATATGAATGACTCAATTGCATATATACCTTCATATTT</gDNA_template>
            <first_frame> S  V  S  A  S  N  A  D  *  S  G  *  E  S  P  F  E  P  E  R  D  N  S  C  V  G  S  V  Q  F  L  F  S  C  L  H  R  D  G  D  S  P  K  W  L  K  I  Q  N  *  S  D  P  A  L  C  Q  D  Q  F  I  H  C  L  F  K  T  P  S  C  I  V  C  F  F  G  V  L  Y  R  I  E  A  *  L  N  T  D  S  R  T  L  Y  I  T  E  L  E  F  D  T  F  D  W  *  *  R  G  I  Y  H  S  I  T  T  L  V  G  K  A  Y  S  C  M  P  L  R  R  D  W  L  L  T  I  D  Q  F  S  H  G  *  S  S  F  G  W  T  I  E  T  F  S  N  M  N  D  S  I  A  Y  I  P  S  Y   </first_frame>
            <second_frame>  L  C  Q  L  Q  M  L  T  D  Q  A  E  K  V  P  L  N  L  N  G  I  I  P  A  *  G  A  C  N  F  F  F  L  A  C  T  G  M  A  I  L  Q  N  G  *  K  F  K  I  N  L  I  L  L  F  A  R  T  S  L  F  T  V  Y  S  R  H  H  L  V  L  F  V  F  L  V  S  C  T  A  L  R  P  D  *  I  Q  I  P  A  L  C  T  *  Q  S  S  N  S  T  P  L  I  G  S  K  G  V  F  I  T  P  S  R  P  L  L  V  R  H  I  R  V  C  L  *  D  A  I  G  Y  L  Q  L  T  N  F  L  M  V  S  L  A  L  V  G  L  L  K  H  S  V  I  *  M  T  Q  L  H  I  Y  L  H  I  </second_frame>
            <third_frame>   C  V  S  F  K  C  *  L  I  R  L  R  K  S  L  *  T  *  T  G  *  F  L  R  R  E  R  A  I  S  F  F  L  L  A  Q  G  W  R  F  S  K  M  V  E  N  S  K  L  I  *  S  C  S  L  P  G  P  V  Y  S  L  S  I  Q  D  T  I  L  Y  C  L  F  F  W  C  P  V  P  H  *  G  L  T  K  Y  R  F  P  H  S  V  H  N  R  A  R  I  R  H  L  *  L  V  V  K  G  Y  L  S  L  H  H  D  P  C  W  *  G  I  F  V  Y  A  S  E  T  R  L  V  T  Y  N  *  P  I  F  S  W  L  V  *  L  W  L  D  Y  *  N  I  Q  *  Y  E  *  L  N  C  I  Y  T  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0107A05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="113266" PGL_stop="113914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113266" e_stop="113914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="113266" e_stop="113914" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113266" stop="113914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113267" stop="113651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  C  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  Y  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  C  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  A  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  I  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  V  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  M  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  *  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113267" stop="113914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRCGFEDMVGYALQVAEEVDASEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYIARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="113925" PGL_stop="114732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113925" e_stop="114732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="113925" e_stop="114732" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113925" stop="114732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATAACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGTAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  R  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  R  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  I  S  *  R  V  Y  L  V  R  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  T  L  V  L  P  I  S  T  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  S  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  *  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  V  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  *  A  E  G  F  T  *  C  G  V  *  D  E  G  S  G  S  C  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  *  P  *  C  C  Q  Y  P  P  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  A  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  H  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  N  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  V  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113927" stop="114730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMAKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIHKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDNPSAANIHLTAMFAPQSEEEKEYMSRVPYASVVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="119638" PGL_stop="120096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119638" e_stop="120096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="119638" e_stop="120096" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119638" stop="120096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAGTAAAAAAATAGTTTAATTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATGAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAACTATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  S  K  K  I  V  *  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  *  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  F  L  K  K  I  K  S  N  K  Y  K  F  K  I  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  N  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  V  Y  E  L  Q  M  T  K  L  R  G  I  S  D  L  F  P  F  Y  I  *  L  * </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  V  K  K  *  F  N  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  N  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  H  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  F  *  K  K  L  K  V  I  N  I  N  L  K  *  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  Q  Q  G  *  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  M  S  S  K  *  Q  S  *  G  V  Y  Q  T  F  F  P  F  I  Y  N  Y   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  *  K  N  S  L  I  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  M  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  I  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  K  F  F  N  F  R  *  M  K  G  I  C  E  S  F  Y  N  S  R  G  K  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  L  Y  I  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0107A05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="127051" PGL_stop="126435"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127051" e_stop="126435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="127051" e_stop="126435" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127051" stop="126435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGACAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGCCTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAACTGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGTCGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAGAACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTACAGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCTTAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGATTACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATTTGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGTCAAATAATTATTTTTCT</gDNA_template>
            <first_frame> S  T  C  G  G  I  I  L  S  A  I  Q  H  *  A  S  L  N  H  *  Q  T  V  G  I  *  E  Y  S  R  L  V  V  I  R  W  M  V  F  C  L  H  L  L  V  I  S  Q  T  P  C  K  F  L  K  H  L  N  V  N  *  R  V  S  F  Q  N  K  L  L  I  L  L  D  *  Q  G  *  V  C  R  T  I  S  *  *  V  I  F  Q  K  Q  C  K  E  C  *  T  F  K  N  F  T  *  E  A  T  S  *  K  E  P  Y  Q  M  L  S  A  V  Y  S  I  L  V  H  *  N  C  Q  K  I  N  F  L  V  P  F  H  H  A  *  G  M  L  L  V  *  G  H  S  I  *  I  T  T  S  W  I  L  D  Y  L  Q  D  W  G  D  F  K  T  S  *  S  S  I  F  H  P  I  I  *  V  E  K  F  R  *  R  A  E  T  *  R  V  Q  H  *  L  I  C  Q  I  I  I  F   </first_frame>
            <second_frame>  Q  L  V  G  E  *  F  C  Q  R  F  N  I  E  L  P  *  I  I  D  K  L  *  E  S  K  S  T  H  A  W  W  *  S  V  G  W  C  F  A  C  I  C  W  *  F  L  K  L  L  A  N  F  *  S  I  *  M  *  T  E  G  C  H  F  K  T  N  Y  *  S  Y  W  I  D  K  D  E  S  V  E  Q  S  V  D  R  S  Y  S  K  N  S  A  R  N  A  E  P  S  R  T  L  P  R  K  Q  Q  V  R  R  S  H  T  R  C  Y  L  Q  F  T  V  S  W  C  I  R  I  V  R  K  S  I  F  *  F  R  S  T  M  L  R  E  C  Y  *  F  E  D  T  L  S  R  *  Q  Q  A  G  F  *  I  T  C  K  I  G  G  T  S  K  H  H  R  V  Q  Y  F  I  Q  L  F  E  W  R  N  S  A  R  E  R  K  L  E  G  C  N  T  D  *  S  V  K  *  L  F  F  </second_frame>
            <third_frame>   N  L  W  G  N  N  F  V  S  D  S  T  L  S  F  L  E  S  L  T  N  C  R  N  L  R  V  L  T  L  G  G  N  P  L  D  G  V  L  P  A  S  V  G  N  F  S  N  S  L  Q  I  F  E  A  S  K  C  K  L  K  G  V  I  S  K  Q  I  T  N  L  T  G  L  T  R  M  S  L  S  N  N  Q  L  I  G  H  I  P  K  T  V  Q  G  M  L  N  L  Q  E  L  Y  L  G  S  N  K  L  E  G  A  I  P  D  V  I  C  S  L  Q  Y  L  G  A  L  E  L  S  E  N  Q  F  S  S  S  V  P  P  C  L  G  N  V  T  S  L  R  T  L  Y  L  D  N  N  K  L  D  S  R  L  P  A  R  L  G  G  L  Q  N  I  I  E  F  N  I  S  S  N  Y  L  S  G  E  I  P  L  E  S  G  N  L  K  G  A  T  L  I  D  L  S  N  N  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127049" stop="126435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLWGNNFVSDSTLSFLESLTNCRNLRVLTLGGNPLDGVLPASVGNFSNSLQIFEASKCKLKGVISKQITNLTGLTRMSLSNNQLIGHIPKTVQGMLNLQELYLGSNKLEGAIPDVICSLQYLGALELSENQFSSSVPPCLGNVTSLRTLYLDNNKLDSRLPARLGGLQNIIEFNISSNYLSGEIPLESGNLKGATLIDLSNNYFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="156886" PGL_stop="156399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="156886" e_stop="156399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="156886" e_stop="156399" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156886" stop="156399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTGAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAATATCTGGAGCTTTTCGTCTAATTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  A  N  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  N  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  Q  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  L  F  S  S  F  C  N  L  I  N  T  F  Q  E  L  L  Q  R  L  I  Q  S  K  G  R  I  I  P  R  T  T  A  I  S  G  A  F  R  L  I  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  F  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  C  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  E  H  F  S  L  V  F  A  T  *  *  T  L  F  K  N  S  C  K  G  *  Y  K  A  K  A  E  S  F  L  G  Q  Q  Q  Y  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  S  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0107A05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="159609" PGL_stop="159962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159609" e_stop="159962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="159609" e_stop="159962" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159609" stop="159962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTCATTATCAAAATGGTATGAAAGGACATTGGACTTGTGAATGTTGTCGACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAAAACAAATAAATAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATGGTGGATGCTCGACCATTCTATATGAGAATGGGTCCAGATATGATAAAATCATTATGGGTTGGATATATGTTACAACTCACCTCTATGGAAG</gDNA_template>
            <first_frame> I  F  H  Y  Q  N  G  M  K  G  H  W  T  C  E  C  C  R  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  D  G  T  L  N  L  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  K  Q  I  N  N  *  S  I  P  *  R  E  C  D  L  *  *  V  W  W  M  L  D  H  S  I  *  E  W  V  Q  I  *  *  N  H  Y  G  L  D  I  C  Y  N  S  P  L  W  K </first_frame>
            <second_frame>  F  F  I  I  K  M  V  *  K  D  I  G  L  V  N  V  V  D  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  H  G  N  M  M  N  F  K  V  M  T  M  C  L  *  C  K  F  M  K  N  K  *  I  I  S  P  F  L  E  E  N  V  T  C  D  E  Y  G  G  C  S  T  I  L  Y  E  N  G  S  R  Y  D  K  I  I  M  G  W  I  Y  V  T  T  H  L  Y  G   </second_frame>
            <third_frame>   F  S  L  S  K  W  Y  E  R  T  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  S  *  Q  C  A  Y  N  A  N  L  *  K  T  N  K  *  L  V  H  S  L  K  R  M  *  L  V  M  S  M  V  D  A  R  P  F  Y  M  R  M  G  P  D  M  I  K  S  L  W  V  G  Y  M  L  Q  L  T  S  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0107A05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="162097" PGL_stop="161422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="162097" e_stop="161422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="162097" e_stop="161422" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162097" stop="161422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162097" stop="161695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTCTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATATCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACAGTCGACGGTTATTTGATATTGATTCCAACAAGACATAACTTATCGAGATCTATTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGAACATATTGATCATTTGCTCTTTCCTTCTTCAAGGAATTTTATATTTGGAATCAATTTGTCTATTATGCTTTCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  L  *  L  D  I  T  I  I  H  Y  M  H  S  S  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  I  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  F  T  L  Y  D  R  F  E  F  K  I  L  I  T  I  Y  I  I  E  R  Y  L  I  S  K  I  Q  S  T  V  I  *  Y  *  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  L  Y  S  T  C  L  I  I  M  N  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  S  I  C  L  L  C  F  R  R  I  I  D  S  </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  F  S  S  *  T  L  Q  L  F  I  T  C  I  Q  V  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  Y  Q  D  F  C  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  S  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  S  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  Y  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  T  Y  *  S  F  A  L  S  F  F  K  E  F  Y  I  W  N  Q  F  V  Y  Y  A  F  G  V  S  *  T  L </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  S  L  A  R  H  Y  N  Y  S  L  H  A  F  K  F  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  I  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  H  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  G  Y  L  I  L  I  P  T  R  H  N  L  S  R  S  I  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  P  L  *  H  L  P  H  Y  H  E  H  I  D  H  L  L  F  P  S  S  R  N  F  I  F  G  I  N  L  S  I  M  L  S  A  Y  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="162095" stop="161865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHSLARHYNYSLHAFKFFICCQIKTNLISSTKGENISTNIRIFAINLYAPRHKPYLISYGYTIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161638" stop="161423"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQQDITYRDLFIFHYFRYLNLFQDFMKCYVNVLLYSTCLIIMNILIICSFLLQGILYLESICLLCFRRIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="161703" PGL_stop="162518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161703" e_stop="162518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="161703" e_stop="162518" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161703" stop="162380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161704" stop="162258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161708" stop="162161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161752" stop="162334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162110" stop="162518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGATACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTATCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</gDNA_template>
            <first_frame> M  R  I  L  N  S  N  L  S  Y  S  V  N  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  M  *  *  I  I  V  M  S  S  *  R  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  G  Q  G  R  K  R  I  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  F  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  N  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  Y  S  R  Y  L  F  C  S  K  F  T </first_frame>
            <second_frame>  *  G  S  *  I  Q  I  C  H  I  V  *  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  I  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  A  C  N  E  *  L  *  C  L  A  R  E  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  F  N  K  A  S  R  I  L  I  W  I  E  M  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  F  G  K  T  K  F  Y  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  L  I  W  I  N  H  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  I  P  D  I  C  F  A  V  N  L   </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  E  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  Y  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  T  *  M  H  V  M  N  N  C  N  V  *  L  E  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  S  I  K  L  Q  E  S  L  Y  G  L  K  W  S  R  K  K  K  D  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  I  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  F  N  S  A  H  T  L  K  S  F  D  A  I  *  Y  G  *  I  T  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  L  F  Q  I  F  V  L  Q  *  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0107A05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="166444" PGL_stop="164691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="166444" e_stop="166053"/>
            <exon e_start="164867" e_stop="164691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="166444" e_stop="166053" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="166052" i_stop="164868" i_length="1185"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="164867" e_stop="164691" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="166444" stop="166053"/>
              <exon start="164867" stop="164782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="166332" stop="166053"/>
              <exon start="164867" stop="164691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATATTATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAATCCAATTACAGTCGAACCTCTCTATGACGACATCGTTT</gDNA_template>
            <first_frame> E  K  I  S  T  P  K  D  I  *  L  L  Y  N  I  C  S  T  *  Y  Y  Y  I  D  E  P  L  Q  L  T  S  N  K  *  Y  Y  P  L  F  F  S  R  F  F  T  R  R  R  R  R  K  W  K  *  M  E  I  L  D  Q  I  E  V  M  F  I  Y  Q  K  R  K  K  Q  R  *  K  R  K  Q  E  S  I  L  M  A  L  H  Q  K  D  T  L  N  L  K  E  V  I  I  L  Q  L  M  L  I  T  S  I  S  T  L  L  L  M  T  Q  F  P  K  I  S  N  S  N  V  S  K  M  I  L  R :   N  W  F  T  M  A  A  K  *  Q  R  N  L  L  K  Q  N  I  T  K  I  L  I  A  L  T  S  S  I  T  R  L  L  L  S  L  T  L  I  T  L  L  L  P  K  K  S  N  Y  S  R  T  S  L  *  R  H  R   </first_frame>
            <second_frame>  K  K  Y  L  P  Q  K  I  S  N  Y  F  T  T  F  V  A  H  D  I  I  T  L  M  N  P  F  N  *  H  Q  T  N  N  I  T  L  F  F  F  Q  D  F  L  Q  E  E  E  E  E  N  G  S  E  W  K  Y  *  T  K  *  K  *  C  S  F  I  K  R  G  R  N  K  D  R  R  G  N  K  R  V  F  *  W  H  C  T  K  K  T  H  *  T  S  K  K  *  L  F  F  N  L  C  *  S  H  Q  S  L  P  F  F  S  *  H  N  S  R  K  S  R  I  P  T  S  R  K  *  S  S   : E  I  G  L  Q  W  Q  P  S  D  R  G  I  Y  *  N  R  I  L  Q  R  S  *  L  H  *  Q  A  A  S  H  G  Y  Y  S  H  S  L  L  *  H  S  Y  Y  L  K  N  P  I  T  V  E  P  L  Y  D  D  I  V  </second_frame>
            <third_frame>   K  N  I  Y  P  K  R  Y  L  T  T  L  Q  H  L  *  H  M  I  L  L  H  *  *  T  P  S  T  N  I  K  Q  I  I  L  P  S  F  F  F  K  I  F  Y  K  K  K  K  K  K  M  E  V  N  G  N  I  R  P  N  R  S  D  V  H  L  S  K  E  E  E  T  K  I  E  E  E  T  R  E  Y  F  D  G  I  A  P  K  R  H  T  K  P  Q  R  S  D  Y  S  S  T  Y  V  D  H  I  N  L  Y  P  S  S  H  D  T  I  P  E  N  L  E  F  Q  R  L  E  N  D  P  Q  :  K  L  V  Y  N  G  S  Q  V  T  E  E  F  I  E  T  E  Y  Y  K  D  L  N  C  I  D  K  Q  H  H  T  V  T  T  L  T  H  S  Y  N  T  L  I  T  *  K  I  Q  L  Q  S  N  L  S  M  T  T  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0107A05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="166370" stop="166053"/>
                    <exon start="164867" stop="164733"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSTNIKQIILPSFFFKIFYKKKKKKMEVNGNIRPNRSDVHLSKEEETKIEEETREYFDGIAPKRHTKPQRSDYSSTYVDHINLYPSSHDTIPENLEFQRLENDPQKLVYNGSQVTEEFIETEYYKDLNCIDKQHHTVTTLTHSYNTLIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 148 chains have been computed
$ 
$ memory statistics:
$ 1934168 bytes spliced alignments in total
$ 61 spliced alignments have been stored
$ 31707 bytes was the average size of a spliced alignment
$ 25536 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1502 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 178 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:47:13
-->
