<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:32:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332480" ref_strand="+" ref_description="SGN-U332480        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:8562836-8564677 REVERSE | Aliases: MYM9.10(evalue: 2e-52, score=201) genbank/nr: gi|18403878|ref|NP_566739.1| expressed protein [Arabidopsis thaliana] gi|21593856|gb|AAM65823.1| unknown [Arabidopsis thaliana](evalue: 2e-50, score=201)">
      <seq>ggtttcaggaaagtggatctctggtacgattggcctaacaaaaggtacttgcacataaaccaataccaattggggaaaaaattgtacgacgttgaatggcagaacggcacttcattttacttcactttggattctacccaggaatgcacggtcaagcatttccctgtggggattttgagacctaattggcttgaaggtgcgaattatttgggccagaggtataaggatggatttctctgtaatgtttgggagaagattgatttcctacactattatgaagatgttgctacccagatacctgtttattggcagttttatgatggattgatcgaacatattataacttttgaggtggggaaagtgctggaggattctaagtggcaagcccccgcttactgcttcaaggagatggagaaaggaaagttaacattgcaagatcgaaaagttgaagaccactctcttctcgctttgtttcatgacagaagatttaaaagtgacaaatgaacatagatgtatgacaaaaatatacctagtgccacttgaatatgcccatgttttgagtttgtagtgctaaatagtttgggacaaatacacacacattcctttgaacttgcacttttatatggcatgacattttagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1342" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1042" g_stop="721" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="720" i_stop="371" i_length="350">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="370" g_stop="55" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="638" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="652"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U332480" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1042" e_stop="721"/>
          <exon e_start="370" e_stop="55"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCAGGAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATGGTATGTATGCTTTTATTATATGATTTTGAGCAATTCCTGTTAATATTCTAATTGAGTTAGACTGCTGATTCATTTAATTATATACATCAAAATTCCATATTCTTAAAAAAAAAAAAATCAGCATTTTTGCATACTCGTGTTCCGAATTTGGTTTTGGGTTTTGCAGGTTGTTAGAACACATTAATGAAGGATTTAAAATGTTATATAGTTTCTGTGTACATGAACAATAATCGTCTCGTGAGCTAGCGTTTTGTGTTAAGTTTAAACTTTAAAAGCTGTTTCTTTTTTCAGCCTCTCTAGATCTGCGCATGGTAATTTTTTGCTGGATATATATTTGTGAAATAATGCAGGATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTGAGTTTGTAGTGCTAAATAGTTTGGGACAAATACACACACATTCCTTTGAACTTGCACTTTTATATGGCATGACATTTTA</genome_strand>
        <mrna_strand>GGTTTCAGGAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATG..............................................................................................................................................................................................................................................................................................................................................................GATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTGAGTTTGTAGTGCTAAATAGTTTGGGACAAATACACACACATTCCTTTGAACTTGCACTTTTATATGGCATGACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321576" ref_strand="+" ref_description="SGN-U321576        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 short chain dehydrogenase/reductase SDR family | chr5:20765088-20766578 REVERSE | Aliases: K3K7.21, K3K7_21(evalue: 2e-112, score=403) genbank/nr: Short-chain(evalue: 1e-112, score=410)">
      <seq>cttgctctaaaactctgaaaccaaaacaaaatctggaaatgagtagtgaaacaaggtgaagaagaatagctcgagcttaaaaccctactagtcgaagaattaatgggtaaaaaggagagggcgcaagagagaagagagcagagacgccaagagatctctcttctccgtactattccttattctgatcaacaaagatggtggtcaaatgaaactatcgctgtcgtgactggttcaaacagaggaattggttttgaaattgctcaccaactggcctcacatggcttaacagtagttcttacatcacgagagactcgtgttggtgaagaagcaacgaaaatcatgcaagaaaaaggtttgaatgtggtatttcatcaattggatattgtagaccctgtatcagttgaaacattttctgactggataaaggaaaactatggtggcttagatatactgatcaataatgcaggagtcaatttcaatttcggcacagataattcagtggaatatgcagaaactgttattcagaccaactactttggcaccaaaagtatgactaaagctatgattccattaatgaggccgtctccttttggcgctcgaattgttaatgtgacctcacgactggggagacttaacggcagaaggaatagaattgcaaatgtcagcttgagacaacaactggaggatgtggattctctatcagaggaactgattgatagtactgtgaactcatttttggaacaagtaaaaaatggaacttgggaatctgggggatggccacaagtattcacagactactcattgtcgaagcttgctgctaatgcttacaccaggctaatggcaagaatactttctgaccagccagagggccataagatatatatgaattgctattgcccaggttgggtgaagactgccatgactgattgggctgggcatacatctcctgaagtagctgctgatactgcagtctggcttgctcttacctcagatcagattgtgagtggtaagttttttgctgagaggcgtgaaataaacttctaaagtgggaattgaagacaaattcaggaatcagcccagtttcttttgcttttgaacgaaaatgtgatacgagtacttataaaaactagagtactcatgttacaagatgctagcaagagcctactgaaaattgatattgttaatgggaaacaatatgtattggtacaagttgttacctagtcgtcaaactctagaggatgtgttaactttggggagagctgaagcctgaaagggtggtctggttttctaataatcacatcgacacatcctagataagatcatttgcctgtaccatttgtaacttttagtacagattagcaatacatactacagcatattggatagctaaactacttaaaatatgtcttctttaattataagcattaacctgttttaaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5155" stop="1317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4855" g_stop="4662" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4661" i_stop="3689" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="3430" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="453" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3429" i_stop="2859" i_length="571">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2858" g_stop="2664" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="648" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2663" i_stop="2412" i_length="252">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2411" g_stop="1608" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="1453" r_length="805" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U321576" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1452</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4855" e_stop="4662"/>
          <exon e_start="3688" e_stop="3430"/>
          <exon e_start="2858" e_stop="2664"/>
          <exon e_start="2411" e_stop="1608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAGGTGAGAGTTCTTTGATCCATAAAAAAAAACTTTCTTGATATGTTTTGCATTTTGTTCTCAATTGAGTCGAAAATATCCGTGTCTGAATTGAGGGTTTCTGCATTTGATTCAGAGGAAAAATGACAAGTCAAAGGGTCTAACTGTTAAGTGTATAATTTTGCCCTGTAGCTTTAGCATTGGGTTTTAGTTAAATCAACAAGAGTGGAAACTGTGTGTAGATAATGGAACGGTCTCTAGTGTATTCAATTTTGACATACTTGAATATGATAGTTAAGATGACAAACTCAAAAAGCATGTAGTTAGTATGTAAGGAAATGTTTTTAGGTTGAAGATTGTTTATGTGTTCTTATGCTTATTGGACAAACAACTCTGCAGTTCAAAATTCAAATGTTGCAGTTTGGATTCTAATAGTGTGACCATATTGTTCTCTTAGAAGTATGTTTTTGCTACAACGAAATTAGAAAGATGTGAGGTGTTTTAAGAACCCCATTCAGAGAACAGAAACCTAAAACGGAAATGCTTGGTGCATAATTTCTGCATGTTTACTCTAGTATTGTTAGATGGGAAACAATGAATGGGAAACAATGACATCGTTGATTGTCTAATCAGCTTAATAGCAGATTTAGAGAAGAAATATGAGATTATTGATTTGGTGTACAGTTGGTTTACTTCCATTCTTCCAAGCTGCCTCTGTACTTCATCTATGGTCTATGCAACATATCATAAGAGTTCCTATGAATCATAACCTAAAATGACTGTATCATTGGAAAATTGTTGGTTCTTTGATTACTTGGCAATCAGTTTCGGTAATTAACTAAGATGACGCTCCAAAGTGTTTTGATAATCTTTTGGCTTATTGTTCCTATTAGTTATCGGAAGATCTGGATAATTACGCTCCAAAGTGTTTTGATTATGGTTTACTTTACGGTGTTGATTCTGAGCATTACACTTATAGACGGAAGATGATTTTCAGATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTGGTAATCCATCTACTCTATTTTCTCTATATAATCTAGCATTGGTCCATCTACTCCATGATATCTTTATGATGATGATACAATATGAGCTTAAATGATGAAATGGGGATTCATATAGCCGACCCCAACTTATTTGGGACTGAGACGTGTTGTTTGTAATCTAGCATTGATCCAGTCGCATATACATCCAGTTGCAGAGCCACCTTGTACAAAGGGATGTCAATAGACCCGCCTTTACTGCAAAATACATTGCTTAGATAGAAATTTTTTAATGCTTATACTATATGTTGAATCCCTTTAATTCCTCGTGTGGTTACTTCTTTATATGTTGACTCCAGTTAGTGAAATCCTTGCTTCATTACTGTGTAAAACCGTACTGGTTACAAAAGCTTACTACCAGGTGCTAATTTTTCTTGTACTTCACAGTTTATGTTCTTAGTTATTATTTTTTCATTTTCCTTTTATTTTGTTTGGGGTGGGGGGGTGTTATTTTACTTTCATGCGGTTATCAATTTTGTCTGTTAACTGTTTTGGCAAATCTGGCCCTTTCAGCTAATGATATGGAAGTATTTAGATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAATGTAAGTGCCTTACTCTTCCTTTTCATTCTTATTCTTCTTCTCACTCTTATTGCCCTTGTTCATCTTGTCTGAAGAGTATTTCTTTTTTTCTTTTACTTCATAGTCAAGTTTTTTTCAGTACTGCACCCTTGTAATGCTTCATAGGAGATATTTGTTATTTGTCAAAAGCAACAACTTCTTGAGTTCTCTAATATGCAAATAGCTTTTATTTTCACATCTCAAAATGATCTACTTCTGTTTGATGCCCACCAGAGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGACTACTCATTGTCGAAGCTTGCTGCTAATGCTTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCT-AACTACTTAAAATATGTCTTCTTTAATTATAAGCATT-AGCTGTTTTAAAAGATCACTTAATCGA</genome_strand>
        <mrna_strand>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAAT............................................................................................................................................................................................................................................................AGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGACTACTCATTGTCGAAGCTTGCTGCTAATGCTTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCTAAACTACTTAAAATATGTCTTCTTTAATTATAAGCATTAACCTGTTTTAAAA-ATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327730" ref_strand="+" ref_description="SGN-U327730        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G51050.1 | Symbol: None | mitochondrial substrate carrier family protein, similar to peroxisomal Ca-dependent solute carrier (Oryctolagus cuniculus) GI:2352427; contains INTERPRO:IPR001993 Mitochondrial substrate carrier family, INTERPRO:IPR002048 calcium-binding EF-hand domain | chr5:20770607-20772940 FORWARD | Aliases: K3K7.23, K3K7_23 (evalue: 1e-109, score=393) genbank/nr: gi|51090928|dbj|BAD35532.1| putative small calcium-binding mitochondrial carrier 2 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-110, score=402)">
      <seq>acagtcataccggaaggcatcagtaagcatgttcatgcatccaaatacctgattgcagggggagttgcaggagctgcttcgcgtactgccacagcacctcttgatcgcgttaaggtcattttacaagtgcaaacaactcatgcttcaattggtcctgcagtcaaaagcatatggaaggaaggtggtctattggggtttttccgtggcaatgggctaaatgtgttgaaggttgcaccagaaagtgcaattaaattttacgcatatgaaaccttgaaaaatgctattggtcgtgccaggggtgttgaagatcagagagacataggaacttctgggcgtcttgtggctggtggaatggcaggtgcaatagcacaaactgctatatatcccatggatcttgttaaaactcggttacagactcattcatgtgagagtggaagcgttcctagtctgcgaaaactatcaaaagatatttttatacaagagggacctcgggcattttatagaggattggtaccatctctgcttggaatcatcccttatgcaggcattgatttagctgcatatgaaactttaaaggatttgtcaaaggtttacattcttcatgatagtgaagccggccctcttgtgcaactgggatgtgggactatttcaggagccctgggagcaacatgtgtttatcctttgcaggttattcggaccagaatgcaagctgattctgcataccaaggtatggctgatgtgttccgaaaaacagttcagcgtgaaggcttcaggggattctacaaaggactttttccaaatcttttaaaagttgtgccagcagcaagcataacctatcttgtgtacgaatcaatgaaaaagagtctagatcttgattagctgacatagagtcagcagcagatttcaggttcaaactgctgatgaagatgatgatgataatgtgacattaaataagataaatttagctcattggtgatatgattatcaaaatcatacacctgatttttgactccccattggttatcgatatcggcggggttatagttatagagttttgtttgtagattcaactgacaaaatgactacgttggcaattgagaatagtcctcttttacaatgtatgtctgagttataggaatatcaattctacactttttggcaactacatgttaaatgaaaaaagtgatgtgctgactttttaaggtttttgctatatggattatatgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15118" stop="17158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15418" g_stop="16027" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16028" i_stop="16120" i_length="93">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16121" g_stop="16211" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="701" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16212" i_stop="16330" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16331" g_stop="16858" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="1229" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1230" polyA_stop="1239"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U327730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1229</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15418" e_stop="16027"/>
          <exon e_start="16121" e_stop="16211"/>
          <exon e_start="16331" e_stop="16858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCATACCGGAAGGCATCAGTAAGCATGTTCATGCATCCAAATACCTGATTGCAGGGGGAGTTGCAGGAGCTGCTTCGCGTACTGCCACAGCACCTCTTGATCGCGTTAAGGTCATTTTACAAGTGCAAACAACTCATGCTTCAATTGGTCCTGCAGTCAAAAGCATATGGAAGGAAGGTGGTCTATTGGGGTTTTTCCGTGGCAATGGGCTAAATGTGTTGAAGGTTGCACCAGAAAGTGCAATTAAATTTTACGCATATGAAACCTTGAAAAATGCTATTGGTCGTGCCAGGGGTGTTGAAGATCAGAGAGACATAGGAACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCTTCATGATAGTGGTACAGCTTTAACTTGTGCCTTCTCAACTGTTACTACCTATTTTCTCCAAGAAAATGAAAACTAATTTCCTACGAATTGTGCATGTAATGCAGAAGCCGGCCCTCTTGTGCAACTGGGATGTGGGACTATTTCAGGAGCCCTGGGAGCAACATGTGTTTATCCTTTGCAGGTTATTCGGACCAGGTAAACTCTGCAGTTTGATTCTAGTTGCCAACAACTGCCAATTTTTCTATTTGGAAGGTGTAGCTTTCTGGTTTATCATGTGACGTGTCGTTTTTTAACTCAAATTATACTCTTTCTAGAATGCAAGCTGATTCTGCATACCAAGGTATGGCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACTCCCCATTGGTTATCGATATCGGCGGGGTTATAGTTATAGAGTTTTGTTTGTAGATTCAACTGACAAAATGACTACGTTGGCAATTGAGAATAGTCCTCTTTTACAATGTATGTCTGAGTTATAGGAATATCAATTCTACACTTTTTGGCAACTACATGTTAAATGAAAAAAGTGATGTGCTGACTTTTTAAGGTTTTTGCTATATGGATTATATGCAA</genome_strand>
        <mrna_strand>ACAGTCATACCGGAAGGCATCAGTAAGCATGTTCATGCATCCAAATACCTGATTGCAGGGGGAGTTGCAGGAGCTGCTTCGCGTACTGCCACAGCACCTCTTGATCGCGTTAAGGTCATTTTACAAGTGCAAACAACTCATGCTTCAATTGGTCCTGCAGTCAAAAGCATATGGAAGGAAGGTGGTCTATTGGGGTTTTTCCGTGGCAATGGGCTAAATGTGTTGAAGGTTGCACCAGAAAGTGCAATTAAATTTTACGCATATGAAACCTTGAAAAATGCTATTGGTCGTGCCAGGGGTGTTGAAGATCAGAGAGACATAGGAACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCTTCATGATAGTG.............................................................................................AAGCCGGCCCTCTTGTGCAACTGGGATGTGGGACTATTTCAGGAGCCCTGGGAGCAACATGTGTTTATCCTTTGCAGGTTATTCGGACCAG.......................................................................................................................AATGCAAGCTGATTCTGCATACCAAGGTATGGCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACTCCCCATTGGTTATCGATATCGGCGGGGTTATAGTTATAGAGTTTTGTTTGTAGATTCAACTGACAAAATGACTACGTTGGCAATTGAGAATAGTCCTCTTTTACAATGTATGTCTGAGTTATAGGAATATCAATTCTACACTTTTTGGCAACTACATGTTAAATGAAAAAAGTGATGTGCTGACTTTTTAAGGTTTTTGCTATATGGATTATATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342465" ref_strand="+" ref_description="SGN-U342465        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G07360.1 | Symbol: None | amidase family protein, low similarity to  enantiomerase-selective amidase (Rhodococcus sp.) GI:152052; contains Pfam profile PF01425: Amidase | chr5:2326709-2330137 REVERSE | Aliases: T2I1.70, T2I1_70 (evalue: 1e-87, score=320) genbank/nr: gi|27529830|dbj|BAC53930.1| amidase-like protein [Nicotiana tabacum](evalue: 8e-104, score=380)">
      <seq>cgaggatccagatgatctttcgtccagggacatcatgttaggtgatccattttcagttgatattacaaaactcactgttgggtatctcgaagacgctgacaaggaagttgttggtgtacttagatcaaagggagtgaatatggttccatttaatctggattacactgttgatagtgctcaaggtattgttagcttcactatggatgttgacatgctagctcattttgacgagtggcagcgctcaaaccaggatgatgaatttgaagctcaagaccaatggcctcttgaacttcgtcgtgcccgtgttatatctgctgtagactatattcaggcacagagaagtcgaagcaaattgattcaggaagtgaaagagaacttcacagttgatgcatttattggagattcaggtgactgggagaaagtttgtgtgggcaatcttgtgggtatgccagtagtggtggttccaacaggttttaagaagatatccaatgcatcgtctgatgatactcgcaggaagacaacaataactactggcatttatgctcctcctgaccacgatcatgttgctttagcattggcaatggcgtatcagtcactaaccaaccatcacaagcagcgccctccaattgacgacattgggccaaatgattcaattccaaacccacccacttccactgtacccgcaagacaactacgtgattactaatctctcaagggtattcaatgtcactctgtgttgtccttttaacttgctattatagatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25817" stop="24025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25519" g_stop="25414" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25413" i_stop="25310" i_length="104">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25309" g_stop="25085" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="331" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25084" i_stop="24971" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.252" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24970" g_stop="24737" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="565" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24736" i_stop="24526" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24525" g_stop="24325" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="766" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U342465" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25519" e_stop="25414"/>
          <exon e_start="25309" e_stop="25085"/>
          <exon e_start="24970" e_stop="24737"/>
          <exon e_start="24525" e_stop="24325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATCCAGATGATCTTTCGTCCAGGGACATCATGTTAGGTGATCCATTTTCAGTTGATATTACAAAACTCACTGTTGGGTATCTCGAAGACGCTGACAAGGAAGTAAGTGATTGTACAACATTACCAGAAATTCACTATGCAAATTAGATTCTTTATCCTCTTTGAAAGCCCGAATTAACTAGACTGTTTAATTATGTCAATTACAGGTTGTTGGTGTACTTAGATCAAAGGGAGTGAATATGGTTCCATTTAATCTGGATTACACTGTTGATAGTGCTCAAGGTATTGTTAGCTTCACTATGGATGTTGACATGCTAGCTCATTTTGACGAGTGGCAGCGCTCAAACCAGGATGATGAATTTGAAGCTCAAGACCAATGGCCTCTTGAACTTCGTCGTGCCCGTGTTATATCTGCTGTAGACTATATTCAGGTATATGTCACAATCTAGAATATATCGCTCTCTAGATGTTAAAACACATTGCCTCGGATAGAGCCCGATACACTTTACCGATCAAATAGCATTAAAGGTGGATGTACTTGACAGGCACAGAGAAGTCGAAGCAAATTGATTCAGGAAGTGAAAGAGAACTTCACAGTTGATGCATTTATTGGAGATTCAGGTGACTGGGAGAAAGTTTGTGTGGGCAATCTTGTGGGTATGCCAGTAGTGGTGGTTCCAACAGGTTTTAAGAAGATATCCAATGCATCGTCTGATGATACTCGCAGGAAGACAACAATAACTACTGGCATTTATGCTCCTCCTGACCACGATCATGTTGTAAGGCTCTAATCCTCTTATCTTGTATGTTTTGGATATAGGAAAATTTAGAATCCTAGAGTCTAGCTTGGTTTAATTTTCTCATATGTATATATGTGAACACTCACACATGGTTCGAGGGGAAAGTAATGTGTTCAGCTCAGAACCTGACTCCGTCCTCGTTGCTAGACTGATGACCTTGATTTTGTGTGTTCCTTCCTTTTATGCGCAGGCTTTAGCATTGGCAATGGCGTATCAGTCACTAACCAACCATCACAAGCAGCGCCCTCCAATTGACGACATTGGGCCAAATGATTCAATTCCAAACCCACCCACTTCCACTGTACCCGCAAGACAACTACGTGATTACTAATCTCTCAAGGGTATTCAATGTCACTCTGTGTTGTCCTTTTAACTTGTTATTATAGATGTA</genome_strand>
        <mrna_strand>CGAGGATCCAGATGATCTTTCGTCCAGGGACATCATGTTAGGTGATCCATTTTCAGTTGATATTACAAAACTCACTGTTGGGTATCTCGAAGACGCTGACAAGGAA........................................................................................................GTTGTTGGTGTACTTAGATCAAAGGGAGTGAATATGGTTCCATTTAATCTGGATTACACTGTTGATAGTGCTCAAGGTATTGTTAGCTTCACTATGGATGTTGACATGCTAGCTCATTTTGACGAGTGGCAGCGCTCAAACCAGGATGATGAATTTGAAGCTCAAGACCAATGGCCTCTTGAACTTCGTCGTGCCCGTGTTATATCTGCTGTAGACTATATTCAG..................................................................................................................GCACAGAGAAGTCGAAGCAAATTGATTCAGGAAGTGAAAGAGAACTTCACAGTTGATGCATTTATTGGAGATTCAGGTGACTGGGAGAAAGTTTGTGTGGGCAATCTTGTGGGTATGCCAGTAGTGGTGGTTCCAACAGGTTTTAAGAAGATATCCAATGCATCGTCTGATGATACTCGCAGGAAGACAACAATAACTACTGGCATTTATGCTCCTCCTGACCACGATCATGTT...................................................................................................................................................................................................................GCTTTAGCATTGGCAATGGCGTATCAGTCACTAACCAACCATCACAAGCAGCGCCCTCCAATTGACGACATTGGGCCAAATGATTCAATTCCAAACCCACCCACTTCCACTGTACCCGCAAGACAACTACGTGATTACTAATCTCTCAAGGGTATTCAATGTCACTCTGTGTTGTCCTTTTAACTTGCTATTATAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344560" ref_strand="+" ref_description="SGN-U344560        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G07360.1 | Symbol: None | amidase family protein, low similarity to  enantiomerase-selective amidase (Rhodococcus sp.) GI:152052; contains Pfam profile PF01425: Amidase | chr5:2326709-2330137 REVERSE | Aliases: T2I1.70, T2I1_70 (evalue: 2e-99, score=358) genbank/nr: gi|27529830|dbj|BAC53930.1| amidase-like protein [Nicotiana tabacum](evalue: 2e-118, score=428)">
      <seq>ggtttattcccgggacttcacctcaagtgggaaattagggcctaaaaactgtggcgaacacttggaacaagccaaaaatgagtttccggtatgtaaatgtggattcgacatgttggatgctggctttttcaatgactgtaagaagcttgaaatacagaagggcgcaaaagattttaacattcctataataagatcgaaccggaagttagttgctactgagaatggaggtttgcgtgacccgtctcctttagttttcaattctgcatggaaatcccaggaagcaaagcgagtaacggacaagttcaattattctgaatgctctggcattcaaaggccgaaaaatgatgaggatattgctttcatgagtgttcttgaactcgggcaacttttcaaggaaaaattgattacatccgaggaactcactcgaatttttctgaacagattaaaaaggtacggccctgtccttgaatctgttatcacaattactgaagaattagcatttcagcaagcaaaagaggctgatcaagtgcttgcaaaaggaaaatatttgggtcctcttcatgggatcccatatggtctaaaggacattattgcagtaccagattatcccacaacatggggttccaagtctttcaaagatcaagttattgatgtcgaagcttgggtttataagaggctgaaatctgctggtgcaattcttgttgcaaagttggtctctggttctttagcttatgacgatatctggttcggtggtagaacaagaaacccctggaatatcaaagaattttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28111" stop="25920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27811" g_stop="27785" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27784" i_stop="27687" i_length="98">
            <donor d_prob="0.766" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27686" g_stop="27572" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="142" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27571" i_stop="27382" i_length="190">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27381" g_stop="27157" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="367" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27156" i_stop="27069" i_length="88">
            <donor d_prob="0.451" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27068" g_stop="26986" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="450" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26985" i_stop="26892" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26891" g_stop="26791" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="551" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26790" i_stop="26623" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26622" g_stop="26499" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="675" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26498" i_stop="26338" i_length="161">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26337" g_stop="26220" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="793" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U344560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27811" e_stop="27785"/>
          <exon e_start="27686" e_stop="27572"/>
          <exon e_start="27381" e_stop="27157"/>
          <exon e_start="27068" e_stop="26986"/>
          <exon e_start="26891" e_stop="26791"/>
          <exon e_start="26622" e_stop="26499"/>
          <exon e_start="26337" e_stop="26220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTCCCGGGACTTCACCTCAAGGTAGTACATTCGAATTCGTAATCCAGGACAAAGATAGTATTCTTTGTTATTTGTTTGCTACTTTCTGTTTGATAATCTGTAGTCATTGCTCAGGACAGTGGGAAATTAGGGCCTAAAAACTGTGGCGAACACTTGGAACAAGCCAAAAATGAGTTTCCGGTATGTAAATGTGGATTCGACATGTTGGATGCTGGCTTTTTCAATGACTGTAAGGTACTGTGATGGAGTTAAATTCACTAAACAATTGTTAGCTGTGTTGCACGGATTATTCATAATTGTCGAGTGTTGTGTTTTGGATCCTCCAAAAGTAGCACATTTTTTTGGAGGATCTGACATCGAGTGCTCCCAATTGGAAAACTGAGTAAGGCTATTTTTGTGTCTGGTGCTGATTCTTTCTTTTCAGAAGCTTGAAATACAGAAGGGCGCAAAAGATTTTAACATTCCTATAATAAGATCGAACCGGAAGTTAGTTGCTACTGAGAATGGAGGTTTGCGTGACCCGTCTCCTTTAGTTTTCAATTCTGCATGGAAATCCCAGGAAGCAAAGCGAGTAACGGACAAGTTCAATTATTCTGAATGCTCTGGCATTCAAAGGCCGAAAAATGATGAGGATATTGCTTTCATGAGTGTACGTGCACCCTAAATAGCCATGCTAACGTAACCGTGTTGCACCACTGATTCCTAGTTTAATTTTATTATTTGAAATTGTTTATCAGGTTCTTGAACTCGGGCAACTTTTCAAGGAAAAATTGATTACATCCGAGGAACTCACTCGAATTTTTCTGAACAGATTAAAAAGGTATGGTGAATGAATGATTTGCTTTTGTTTATCTCATTTGCATGCTATTGAATAATTTTATTCTGAAAATGATGTGTTATGCCGGAGCTCGCAGGTACGGCCCTGTCCTTGAATCTGTTATCACAATTACTGAAGAATTAGCATTTCAGCAAGCAAAAGAGGCTGATCAAGTGCTTGCAAAAGGAAAATATTTGGGTAGAAGTCCACCTTCCTCTCTTCCCCTTAGTCCCCTTCCGCGTCCTCTCCACATTTTAGTTTTTGGATGTCACAGAAAATCTTCTAACATTTGTTTATATGGAGTGAAGTGTCTGGAGAGAGATGATATTGAAATTTCAGTTTGAATGACCATTCTGTTCTTTATAGGTCCTCTTCATGGGATCCCATATGGTCTAAAGGACATTATTGCAGTACCAGATTATCCCACAACATGGGGTTCCAAGTCTTTCAAAGATCAAGTTATTGATGTCGAAGCTTGGGTTTATAAGAGGTACTTACAAATCACTACAACTAGAAGGCATGCCGATCTTGCCACCAACAAACCTTTGACTTTGGCTGTGAAAAGCAATCAATAAATGTCGAGGCCACTCCCGAAGCCAGCCTATATTGTACATATGTTTGTATAATAATTTGTAGATACGGTTGATGCAGGCTGAAATCTGCTGGTGCAATTCTTGTTGCAAAGTTGGTCTCTGGTTCTTTAGCTTATGACGATATCTGGTTCGGTGGTAGAACAAGAAACCCCTGGAATATCGAAGAATTTTCTACT</genome_strand>
        <mrna_strand>GGTTTATTCCCGGGACTTCACCTCAAG..................................................................................................TGGGAAATTAGGGCCTAAAAACTGTGGCGAACACTTGGAACAAGCCAAAAATGAGTTTCCGGTATGTAAATGTGGATTCGACATGTTGGATGCTGGCTTTTTCAATGACTGTAAG..............................................................................................................................................................................................AAGCTTGAAATACAGAAGGGCGCAAAAGATTTTAACATTCCTATAATAAGATCGAACCGGAAGTTAGTTGCTACTGAGAATGGAGGTTTGCGTGACCCGTCTCCTTTAGTTTTCAATTCTGCATGGAAATCCCAGGAAGCAAAGCGAGTAACGGACAAGTTCAATTATTCTGAATGCTCTGGCATTCAAAGGCCGAAAAATGATGAGGATATTGCTTTCATGAGT........................................................................................GTTCTTGAACTCGGGCAACTTTTCAAGGAAAAATTGATTACATCCGAGGAACTCACTCGAATTTTTCTGAACAGATTAAAAAG..............................................................................................GTACGGCCCTGTCCTTGAATCTGTTATCACAATTACTGAAGAATTAGCATTTCAGCAAGCAAAAGAGGCTGATCAAGTGCTTGCAAAAGGAAAATATTTGG........................................................................................................................................................................GTCCTCTTCATGGGATCCCATATGGTCTAAAGGACATTATTGCAGTACCAGATTATCCCACAACATGGGGTTCCAAGTCTTTCAAAGATCAAGTTATTGATGTCGAAGCTTGGGTTTATAAGAG.................................................................................................................................................................GCTGAAATCTGCTGGTGCAATTCTTGTTGCAAAGTTGGTCTCTGGTTCTTTAGCTTATGACGATATCTGGTTCGGTGGTAGAACAAGAAACCCCTGGAATATCAAAGAATTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332066" ref_strand="+" ref_description="SGN-U332066        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | respiratory burst oxidase protein C (RbohC) / NADPH oxidase, nearly identical to respiratory burst oxidase protein C from Arabidopsis thaliana (gi:3242785) | chr5:20774510-20779657 REVERSE | Aliases: K3K7.25, K3K7_25(evalue: 1e-38, score=156) genbank/nr: NADPH(evalue: 6e-43, score=176)">
      <seq>attattgtacaagtgtttatgaaaaaggtgatgctcgatttgctttcatcgcgatgcttcaatccatcaatcatgctaaaaatggggtagacattgtatttggaacaaaagttaaaactcattttgctagacctaattggaaaaatgtttacaaacgcattgtttttaatcataatgatgcaaaagttggagttttttactgtggggcaccagcactgacgaaacagcttggacaactggccttaaattttttccccaaaacatcaacaaagtttgatttccataaaaaaaacttttgaccaatcatgggctagcaaaggatcaaaccaaacaaataacaaccatttttttttataaaaaagcaaataaatcccctacttttttttttttttttttttataaaaaattttgttgattttgttaatagttgggttttgtattgttatacgaaaaacaattatttttgtgcagctcccccccccagtactggattggattaccaattcaaataatccttttattttaatttgttccttttgtaaaggatatatttatgttgatttatgttaaacgatattaaatgtcccccgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31174" stop="29521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30874" g_stop="30686" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30685" i_stop="30227" i_length="459">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30226" g_stop="29828" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="589" r_length="400" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="626"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U332066" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30874" e_stop="30686"/>
          <exon e_start="30226" e_stop="29828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGATCTGCTCTCATCGCGATGCTTCAATCCATCAATCATGCTAAAAATGGTGTAGACATTGTATCTGGAACAAGAGTTAAGACTCATTTTGCTAGACCTAATTGGAGAGATGTCTACAAACGCATTGCTCTTAATCATACTGATGCAAGAGTTGGTATGTACCTGAGACTTCCTATAATTTTAAGAATTTCAATTATATGCATAATAGTAAACACACACACGTTCTTTAATTTGGCCTCAGCTGATATAGACATAACACATAAATATGACTCTTAACTTGGCGTCACTTGACAATTACGATCTTGAACTTTACATATATATGAGCAGACACTTAGACTTGTATATAATTAAACAAATTGACATATTTATCTTACATGGCACTCTACATGGAAGATTTGTGTCCTACGTGTATCATGCCATGTAGGAAATGTATGTGTATTTGTTCAATTTTATATAAATTTAAGTGTATACTTGTGTACATCAAAGTTAAGGGTCATAGTTATCAACTGATATCAAAATTAAAAGTCATATTTATGTCATTTCAAATTTAAATCGTATAAATAAACACTTGAACTTATATAAAATTAAATGGTCGCTCTTTTAAAATTTGAAGGAGTTTTCTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAGATTTTTCCCACAAGACATCAACAAAGTTTGATTTCCATAAAGAAAACTTTTGACCAATCATGGACTAGCAAAGGATCAAACCAAACAGATAACAACCATTTTTTTTTATAAAGAAGCATATATATCCACTAC-TTTCTTTTTTTTTTTTTTTATAGAAAATCTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAGCAATTATTTTTGTGCAGCTCCACCCACCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATCTATGTTGATTTATGTTAAACGATATTAAATGTCCACA</genome_strand>
        <mrna_strand>ATTATTGTACAAGTGTTTATGAAAAAGGTGATGCTCGATTTGCTTTCATCGCGATGCTTCAATCCATCAATCATGCTAAAAATGGGGTAGACATTGTATTTGGAACAAAAGTTAAAACTCATTTTGCTAGACCTAATTGGAAAAATGTTTACAAACGCATTGTTTTTAATCATAATGATGCAAAAGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTTTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAAATTTTTTCCCCAAAACATCAACAAAGTTTGATTTCCATAAAAAAAACTTTTGACCAATCATGGGCTAGCAAAGGATCAAACCAAACAAATAACAACCATTTTTTTTTATAAAAAAGCAAATAAATCCCCTACTTTTTTTTTTTTTTTTTTTTATAAAAAATTTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAACAATTATTTTTGTGCAGCTCCCCCCCCCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATTTATGTTGATTTATGTTAAACGATATTAAATGTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325428" ref_strand="+" ref_description="SGN-U325428        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | respiratory burst oxidase protein D (RbohD) / NADPH oxidase, identical to respiratory burst oxidase protein D from Arabidopsis thaliana (gi:3242789) | chr5:19414669-19419287 FORWARD | Aliases: MCA23.25, MCA23_25(evalue: 1e-101, score=366) genbank/nr: NADPH(evalue: 2e-155, score=462)">
      <seq>gatttagaaggaacaaaattcgtttaccaagaccattgagcaagctcacaggtttcaatgccttctggtactcccatcacctctttgtcattgtctattctctcctcatagtccatggtatcgagctttacttaaccaaagaatggtacaagaagacggtcagtctatacatttgtggaatcaacaataatttcttaatgagtttaacttttatacactcacaactattaaatcaacttacaatgcgagcgtatactggcagacatggatgtacttggctataccaatcatactttattctggtgaaagattactaagggcattcaggtcaagcgtcaaggatgttaaaatattaaaagtggctatgtatcctggaaatgtgttgacacttcaaatgtcaaagccacagggcttcaattataaaagtgggcaatacatgtttgtcaactgtgctgcagtttcaccatttgaatggcacccattttctataacttcagcgcctggagatgagtatctaagtgtacatattcgaactgttggtgattggactacaaaactcagagatgttttctcagagccatcacaaacaggaagaagtggactcgttaaagccgcctacatgcaagacaatataaattattacccaaaagtgttaattgatggaccatatggagcaccagcacaagactataaggaatatgaggtgcttttgttggtaggtttaggaattggagccacccctatgataagtattgttaaagacatagtgaacaacatgaaggaagaagagtatgatcatgatttggagagcacagaacaaaagaaaaaatcaggatcaggatcaaacttcaagagagtatatttttattgggttactagagaacaaggttcatttgattggttcaagggtttaatgaatgagttagctgaaatggattgtgctgaaataatcgagatgcataattattgtacaagtgtttatgaagaaggtgatgctcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33712" stop="30535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33412" g_stop="33055" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33054" i_stop="32955" i_length="100">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32954" g_stop="32839" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="474" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32838" i_stop="32447" i_length="392">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32446" g_stop="32344" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="577" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32343" i_stop="32239" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32238" g_stop="32180" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="636" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32179" i_stop="31201" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31200" g_stop="30835" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="1002" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U325428" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1002</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33412" e_stop="33055"/>
          <exon e_start="32954" e_stop="32839"/>
          <exon e_start="32446" e_stop="32344"/>
          <exon e_start="32238" e_stop="32180"/>
          <exon e_start="31200" e_stop="30835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGAAGGAACAAAATTCGTTTACCAAGACCATTGAACAAGCTCACAGGTTTCAATGCCTTCTGGTACTCCCATCACCTCTTTGTCATTGTCTATTCTCTCCTCATAGTCCATGGTATCGAGCTTTACTTAACCAAAGAATGGTACAAGAAGACGGTCAGTCTATACATTTGTGGAATCAACAATAATTTCTTAATGAGTTTAACTTTTATACACTCACAACTATTAAATCAACTTACAATGCGAGCGTATACTGGCAGACATGGATGTACTTGGCTATACCAATCATACTTTATTCTGGTGAAAGATTACTAAGGGCATTCAGGTCAAGCGTCAAGGATGTTAAAATATTAAAAGTAAGTTGAGTCCAAATCTATACATATAATTTAGTTATAATTCTTGATAATATCAAGGTTGTTGAGACAAATGATAGATTTGCACTTAATATGGAGCTAGGTGGCTATGTATCCTGGAAATGTGTTGACACTTCAAATGTCAAAGCCACAGGGCTTCAATTATAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCAGTTTCACCATTTGAATGGTAGGTGATGCTTAATAAATAAATTACTACTAATTAAGTGTCACATGTGTTTCTTAATTGTGTTATTAATTGTTCTTTTTTCTTTTTCTTGAATAAATTTTCTTAAAATATGAATTTCAAATCTTGAAAATAAGATATGTTATCTATTACAACAGATAAAAATTGTCTGATGGTGTAAAAATATGTTAACTGAATTACATTGATTGTGCAAAAGACACGATATGAATCTCATTCACTCTCAATCACTAATTAGATGACGAGGCGTTTGACTATCGTAAAAGAGTCCAAGTACATTTAGTCTCATGTTTACCTGTATTTGGTTGGATTTCTTTGTTTTTAACTCGATACACGTACTGTTCTTGTGACTTGGCAAATATTATATATATTACCAGGCACCCATTTTCTATAACTTCAGCGCCTGGAGATGAGTATCTAAGTGTACATATTCGAACTGTTGGTGATTGGACTACAAAACTCAGAGATGTTTTCTCAGAGGTAAGCATTATTAAAGAAATGTTTCCACTATTTTTAATACTCAATTATTGAACTTTTTCTTAATCATATCCATACATTTTTTACATTATTATATATGCGTGCCAGCCATCACAAACAGGAAGAAGTGGACTCGTTAAAGCCGCCTACATGCAAGACAATATAAAGTGAGTCTTTATTCCATTATTATAATACAGTGCCCCCCAATGACACTTAAAAAAAAATGATTCACTTTAACAGCGCATTAGGTAGTTTAACCTTCATTTTCATATAATTTGGGTGAGGAATAAAAGTAAATAATGATACCATAAATTTTTTATATTTTGTTTGATTATTGTGTTTGAAATAATTTATTTTATCATTTATATCATACGTGTATGATATGACAGAAATTTTTTTTCTTTTTTACCATAAAAATTGGAAAACCTTTTCCATTACTTATAAATGGAAATAATTTTTCTTTACAAATATTCCAACTCTAAACAATGTCATTTGCTCTAATTAACATTTTAATACTTAAATTTTTCATCAAACCATTGTTTAATTTTTCTAAATTATTTCAAATTTTTTTCCATGTACTGGAAAATTAGTTATTCCCTTCGTCCTTTTTACATTTCATTTTTAGGTCCTCTAGAAAAGAATGTCACGTTATTATAGTAAGAAAAAAGATTATTTTAAAATTTTTCTTTTACCTTTAATGAAATAATTAGCGATCACACAAATATTTAAGAATTATTTCGACAACAAGTTTCATTTTTTTTTAAAAAAAATACCATTACCAATGAGTTAAAAGAATAAACGAGTACATTAGTAATGCTAGCATATATTGCATAAAAAAATTTATTTATAAAGATACGCTCCACAATAATGATATTATGAAAAAAGATGTAAAAAAAGGTTTTGAGGGGCAATAAGTACTTATGCATGCATTCAAAATGATTGCATTATTAATACTATGAGTTTTCATGTATTAGTAATATACGGCTCAATATACAATAGATATACATAGGTTAAAAAAGTGCACTAAACAAGGTGCTATTAATACACAGAGTTAATACATGCATTATTTTTTCTAATACACTCTATCAGACGATCGTAAAACTACTAACAAAGCTGATTATATATGATGACGTTTAATTATTTCAGTTATTACCCAAAAGTGTTAATTGATGGACCATATGGAGCACCAGCACAAGACTATAAGGAATATGAGGTGCTTTTGTTGGTAGGTTTAGGAATTGGAGCCACCCCTATGATAAGTATTGTTAAAGACATAGTGAACAACATGAAGGAAGAAGAGTATGATCATGATTTGGAGAGCACAGAACAAAAGAAAAAATCAGGATCAGGATCAAACTTCAAGAGAGTATATTTTTATTGGGTTACTAGAGAACAAGGTTCATTTGATTGGTTCAAGGGTTTAATGAATGAGTTAGCTGAAATGGATTGTGCTGAAATAATCGAGATGCATAATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGATC</genome_strand>
        <mrna_strand>GATTTAGAAGGAACAAAATTCGTTTACCAAGACCATTGAGCAAGCTCACAGGTTTCAATGCCTTCTGGTACTCCCATCACCTCTTTGTCATTGTCTATTCTCTCCTCATAGTCCATGGTATCGAGCTTTACTTAACCAAAGAATGGTACAAGAAGACGGTCAGTCTATACATTTGTGGAATCAACAATAATTTCTTAATGAGTTTAACTTTTATACACTCACAACTATTAAATCAACTTACAATGCGAGCGTATACTGGCAGACATGGATGTACTTGGCTATACCAATCATACTTTATTCTGGTGAAAGATTACTAAGGGCATTCAGGTCAAGCGTCAAGGATGTTAAAATATTAAAA....................................................................................................GTGGCTATGTATCCTGGAAATGTGTTGACACTTCAAATGTCAAAGCCACAGGGCTTCAATTATAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCAGTTTCACCATTTGAATG........................................................................................................................................................................................................................................................................................................................................................................................................GCACCCATTTTCTATAACTTCAGCGCCTGGAGATGAGTATCTAAGTGTACATATTCGAACTGTTGGTGATTGGACTACAAAACTCAGAGATGTTTTCTCAGAG.........................................................................................................CCATCACAAACAGGAAGAAGTGGACTCGTTAAAGCCGCCTACATGCAAGACAATATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTACCCAAAAGTGTTAATTGATGGACCATATGGAGCACCAGCACAAGACTATAAGGAATATGAGGTGCTTTTGTTGGTAGGTTTAGGAATTGGAGCCACCCCTATGATAAGTATTGTTAAAGACATAGTGAACAACATGAAGGAAGAAGAGTATGATCATGATTTGGAGAGCACAGAACAAAAGAAAAAATCAGGATCAGGATCAAACTTCAAGAGAGTATATTTTTATTGGGTTACTAGAGAACAAGGTTCATTTGATTGGTTCAAGGGTTTAATGAATGAGTTAGCTGAAATGGATTGTGCTGAAATAATCGAGATGCATAATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314182" ref_strand="+" ref_description="SGN-U314182        Tomato 200607 #1 [50 ESTs aligned] arabidopsis/peptide: AT1G16880.1 | Symbol: None | uridylyltransferase-related, similar to (Protein-PII) uridylyltransferase (PII uridylyl- transferase) (Uridylyl removing enzyme) (UTase)(SP:Q9AC53) (Caulobacter crescentus) | chr1:5773657-5776301 FORWARD | Aliases: F17F16.13 (evalue: 1e-96, score=350) genbank/nr: gi|18394414|ref|NP_564010.1| expressed protein [Arabidopsis thaliana] gi|25344189|pir||B86304 hypothetical protein F6I1.12 [imported] - Arabidopsis thaliana gi|9802776|gb|AAF99845.1| Unknown protein [Arabidopsis thaliana] gi|14423502|gb|AAK62433.1| Unknown protein [Arabidopsis thaliana] gi|30023784|gb|AAP13425.1| At1g16880 [Arabidopsis thaliana](evalue: 1e-94, score=350)">
      <seq>gttgttgatttataaatacttattataaagtcaataatggggggcttttcattttaatggcggatattactagaacaaacaatctgattcattttctagcccctatagcttcatcttcttaaatatcttttgctctactatatatcttaagataagaataggaataaagtttctactttttattgcatcttcttctttcttgatattattgaactgaaaatggctgtggctatggtttcttgtggaatccccactagtttaaaacttatagagaagcaacccgtttcaattccaggcttctttaatgggtctttagctttgaatccagtccaaaaactgcacgttacacccaagagattagctttatctgggagtacaattgttctgaaagcatcggctacagctgtggaggatggaagttcacaagagactgctgcagttccaacacccaaagttgtaattgatttggattcagatccagaagcaacgattgtagaggttacctttggggatcgccttggggcacttctcgacacgatgaatgcattaaaaaaccttgggctgaatgttgtcaaggctaatgtctgtcttgattcatctgggaagcataacacattcgccatcacaaaagcttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggttcttgcaaatagcctgcgttatttcttgaggagaccaacaacagaggatgcaagtttttaatacaatgctgaaaagtgggaaattgtcaacaggattaaccaagtactttcaattttcaagataatgaagcttgctggttttagcagcaccgatccattccaaggtgtaaacagcgaaaatatgcttgaaactcagaatcatagcttcaatactgctgtaacaatgtagattggtactatttatatattaatgatataagttttcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41541" stop="44999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41841" g_stop="42196" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42197" i_stop="42665" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42666" g_stop="42720" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="411" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42721" i_stop="42826" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42827" g_stop="42952" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="537" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42953" i_stop="43034" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43035" g_stop="43129" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="632" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43130" i_stop="43317" i_length="188">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43318" g_stop="43402" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="717" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43403" i_stop="43503" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43504" g_stop="43563" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="777" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43564" i_stop="43839" i_length="276">
            <donor d_prob="0.084" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43840" g_stop="43895" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="833" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43896" i_stop="44014" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44015" g_stop="44120" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="939" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44121" i_stop="44244" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44245" g_stop="44313" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1008" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="44314" i_stop="44411" i_length="98">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="44412" g_stop="44698" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1009" r_stop="1295" r_length="287" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1296" polyA_stop="1308"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U314182" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1295</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41841" e_stop="42196"/>
          <exon e_start="42666" e_stop="42720"/>
          <exon e_start="42827" e_stop="42952"/>
          <exon e_start="43035" e_stop="43129"/>
          <exon e_start="43318" e_stop="43402"/>
          <exon e_start="43504" e_stop="43563"/>
          <exon e_start="43840" e_stop="43895"/>
          <exon e_start="44015" e_stop="44120"/>
          <exon e_start="44245" e_stop="44313"/>
          <exon e_start="44412" e_stop="44698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGATATATAAATACTTATTATAAAGTCAATAATAAGTGGCTTCTCATTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAGGTACGCTACATTTTTCTCTGAATTTGGTTTAATTCATCTTTAGCTAATTTGCTTTCTATTGATTGTGGAACCTTATTTTCTCCCAATTTTTATAAATATTTTAGTTGTCGGCAACTAACATCATTTAACCTAATCACAAAATTTGAAATGCAGCTAAATAAATTATGTACTCTTTGATTGAGATTATCTGTAGTTGGTACTTTCTCAAGGACTGGTTAAATTTGTGAGATAAATTGGTCAATTAGGAAAGGGCAATTTTTTATGATTTGAATTGCGGGTAGAGAAAAGGGAAATCAGGAGGGGATTACAAGATGGGGAATCGAGCTATGTATAGTCAACCAACTGAGATACTTAGATAATATTTGAAATAGATCTATGGACTTCCTAAAGTTCAGTAATTATATGGACTTGGAATTACTGTAGTATTAGAGTGGGCAACAATTGAAATCAATATACTTTGTTTTTCCAGATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAGGTATCTTAAGCATATTAGCTGGTTTAAGTAATTGTTCCTTGCTATTTAGTTTTTGATCTGAGATTGAGATGTTTGTTTTCGATTCATGTAATAACTGGTCAAGCAGGATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACGGTAAGAATCTGTTACTCTTATGATTCAAGTGTTGAGTGCTATTTGCTGTCAGTTCTGATCTTGATTTGCAAATGTATTCCAGATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGCGTAAGTTCATGTTGTTGGTTCCTTTGTGCTGCTAGGTGATTTTTCTGTTTCTCTTATACTTGAGCTTTGTATGTTATCAGTCACCAGATATATGAAAACACTTACGAATGAATCTTTTGTTATGCGTCTAACAACATTAGTTCCCTGATTGAAATTCTGATTGTTTCGCTATTGGGACTTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAGGTAACCGATGCTAAGTTACAAGCAATATACAATTTCTTTCATTAGACCTTGGTAGCTTGAAGAAAGTTATTGACAATTTTCAGTCTTGAACCTTGTAGGTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACA</genome_strand>
        <mrna_strand>GTTGTTGATTTATAAATACTTATTATAAAGTCAATAATGGGGGGCTTTTCATTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG..........................................................................................................GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG..................................................................................ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC............................................................................................................................................................................................TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG.....................................................................................................GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG....................................................................................................................................................................................................................................................................................ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG..................................................................................................GTTCTTGCAAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGGGAAATTGTCAACAGGATTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACTATTTATATATTAATGATATAAGTTTTCAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314183" ref_strand="+" ref_description="SGN-U314183        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G16880.1 | Symbol: None | uridylyltransferase-related, similar to (Protein-PII) uridylyltransferase (PII uridylyl- transferase) (Uridylyl removing enzyme) (UTase)(SP:Q9AC53) (Caulobacter crescentus) | chr1:5773657-5776301 FORWARD | Aliases: F17F16.13 (evalue: 4e-28, score=121) genbank/nr: gi|18394414|ref|NP_564010.1| expressed protein [Arabidopsis thaliana] gi|25344189|pir||B86304 hypothetical protein F6I1.12 [imported] - Arabidopsis thaliana gi|9802776|gb|AAF99845.1| Unknown protein [Arabidopsis thaliana] gi|14423502|gb|AAK62433.1| Unknown protein [Arabidopsis thaliana] gi|30023784|gb|AAP13425.1| At1g16880 [Arabidopsis thaliana](evalue: 3e-26, score=121)">
      <seq>ttgtttctagttctacgggtaggaaggtcgatgatccagagctgcttgaagcaattcgtttgacgatcatcaataatatgatggaataccacccggtagaacttcaataagttattgagcatcagttgcttgatctggtacctcctgagggattcttatatagctgcttcttcttactgcataatttctgatgcaggaatctagctccagattagctatgggagaagctttcggtgtttttcaaccatatcagaaggttgttaatagcctatatatgctgtcctcgcctccagtgtgtgtatacaccgttaagtagattatgcacatctgtattggttattttgaacatgtgggagtggggggttgttttctgaatgtgcgaggttcctgctagtccttgcatcatagtaacgactaatagctttctttctagtacaaatttgatacagaaactaaggcttgatgtacataaactttcatatcaatcatttaacttaaatcttactttgttgtttatgctgaaaattttcagattgacgtggacatagcgacccatatccatgtttatgacgatgctcctgaaagaagtttactctgtgtagagacagcagacagacctggactgatagttgatcttgtcaagaccattactgacataaatgttgatgttgaatcaggagagttcgatactgagggtttgcttgctaaggcgaaatttcatgtcaactacaagggcaaagcgttgatcaagccccttcaacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43008" stop="44615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43308" g_stop="43895" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43896" i_stop="44014" i_length="119">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44015" g_stop="44120" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="694" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44121" i_stop="44244" i_length="124">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44245" g_stop="44313" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="763" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U314183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43308" e_stop="43895"/>
          <exon e_start="44015" e_stop="44120"/>
          <exon e_start="44245" e_stop="44313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAGGTAAGATCATATTCCCATTGCTTGGTTTTGATCAGTAAATACTGATACTGATCAACCTCATTAAGTGATCCATTTAGTGCACAACTATAAGAGAATAATAAAATGCCTCTATTTTGCAGTTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAGGTGAGATTTTTTCAGTCGGTTTTCCAAATCATTGCACCAAACTGTTTAGGTAGTGGCTGTGCCGTCTAATAAGTATCAACCTGCAGTAGTTAGTATTGAGTTAAAAAGTTTCATTTTGGTGTAGGGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG</genome_strand>
        <mrna_strand>TTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG.......................................................................................................................TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG............................................................................................................................GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323038" ref_strand="+" ref_description="SGN-U323038        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, hypothetical protein F27D4.1 - Arabidopsis thaliana,PID:g4115371 | chr4:14990368-14993075 FORWARD | Aliases: T10C21.130, T10C21_130(evalue: 2e-84, score=310) genbank/nr: gi|15234853|ref|NP_194807.1| expressed protein [Arabidopsis thaliana] gi|25407680|pir||C85360 hypothetical protein AT4g30780 [imported] - Arabidopsis thaliana gi|5725442|emb|CAB52451.1| putative protein [Arabidopsis thaliana] gi|7269979|emb|CAB79796.1| putative protein [Arabidopsis thaliana] gi|28393759|gb|AAO42289.1| unknown protein [Arabidopsis thaliana] gi|28973227|gb|AAO63938.1| unknown protein [Arabidopsis thaliana](evalue: 1e-82, score=310)">
      <seq>ccaaaacacaaattgctttctctttcatctcataagcgtgactttcactggaattttccaactctactcagcacggctctgatatttttggtatttgtcttactcactcaatctgaaactcttttttgtcgttttctcatgcatccctcgaggaattacaccggcgaagcgccgtcggagttgcggtggcagagggggaaaatgttgccggtgaagagggaggtagaccttgaaaacttttccgatgaagaacgctgcaaactcgacaagcgattcaagctttcctcttctctgcaacagcaactgggtgaaggagcttgtaattttactgtttcatcatcgttcatgtcggtagatgaacccagtccattaggtttgcggctaagaaagaccccatcactgttggatatgttccaaacgatgcttgggggcacctccatggtggaaagtcttggaaagaaggagcagaaaagaagcactgcaatgatagaaaagctcaaggcctcgaattttcctggttcagttctgagaattggaacctgggagtataagtcgagatatgaaggagatttggttgcaaaatgttactttgccaagcataaacttgtatgggaagtccttgatggtggtctcaagaataagatagagatccagtggtctgatattatagggttgaaggcaaattacccagatgatgcaccaggaaccttggatatagtgctggcaaggcaacctcttttctttagggagacagatccacaacccagaaagcacacactttggcaagctacttcagattttactgacggacaggctagtatacacaggcgacattacttagagtgtccgcatggattgttgggaaagcatattgaaaagcttgtgcaatgtgatcctcgtctcaactttctgagtcaacaagcagagatgactctagattctccttattttgaatcccagatgtcaggttttgaagacacacatgaaagggaccgtgaatttgatctgaataatgaagggagtccgaattttattgactatacttcaccttctggagctcagtgttcctccaaaagtaagcaagatcctagacctttggaatgtattcaccaagaaaagccatccccaagatcaggtaattatgtattttatctgagaagtgcatttaagttttcttgaattgagttgtatggtgagtatgtctttgaagatgtcgatgatcatcccttatcccccacctttttgaaaaaaagacaaattgatcgtcattttcttttcaaagagtggagaggaagttcgctacccattcccttgattttattgtagtcatgtcttggtgttacagttgtgtgtttcttgaacatgatccacattgagggggttgtctctgttcaaaaagaggaatatgaccgtaatgcagaattgggttatggacatgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54410" stop="58893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54710" g_stop="55006" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55007" i_stop="55542" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.036" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55543" g_stop="55791" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="546" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55792" i_stop="55877" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55878" g_stop="56051" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="720" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56052" i_stop="56188" i_length="137">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56189" g_stop="56295" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="827" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56296" i_stop="57977" i_length="1682">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57978" g_stop="58593" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="1443" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U323038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54710" e_stop="55006"/>
          <exon e_start="55543" e_stop="55791"/>
          <exon e_start="55878" e_stop="56051"/>
          <exon e_start="56189" e_stop="56295"/>
          <exon e_start="57978" e_stop="58593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAAGTAGGTTTTTCTCTCTCTTTGTTGTTCTAATTTAAAAGCGATGTTTCTCTATTTGATTTGTGCAATTTTTCTTCTTCCAACACTTTTGTCTGTGTGCATCTTGTTATCTATTACCTTATGCTCTGAATTTGACTACACATAGAGTTTATGGTGTTAGTTTGACTTACTATTGAATTACATCAAACATTTAGGGACTTACCAAATTGAGAAGTGCTTGGTAATAAATGAAGTAAAGGAATATAAATAACCATTTTAGAAATGTTTGTAGGAGAATTATCAATTACCAAATTGGGAATAAGAACTTGGCTTATCAGTATTGATGCCTTGATATTGATTAAGGAGATTCCAGTGAATTTTACGTCTATTGTTATCTTCTGAGGTATTTCTTTCTAACTGTTCTGGAAAACGATTATCGGAAAAACCTCTCTACAGCGCGAAGGTAGGGGTAAGGTCTGCGTGTACACCCTATCGTAGGACTATACCGAGTATGCAATTGTATTATCTTCTCTGAGATCTAAATCAAGGATATTTTGCAGCAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAGGTATACACAGTTCTTTTTTTGATGATTTGTAAATAATGTTCAGTCTAAATGTTCCACAAGTGAATGTAATTCTATTGTCTCTACAGTATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTGGTAAGGGGTAAAACAATTTTGTTTTTGCTATTGTCTTTGTGAAGTTATTTCCTTAACTGCATTAGCAGAATAGGCTCCAGTGTTGCTTTCCTTATCAACCTTAGTTGATGAGGGTGCTATGTATCCTTGTATTGCAGCTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAGGTCTTACTATTATCCCTGCAGTTCTTTTCTTCCTCAAGTAATAATTACGCCATTGTTACTTGTTAGTCGTTAGCCAATTTTATCTTATATTCTTGACATCTCCTCGGACATCTACTCTAGCCTTTTAACCCTTCCTTTTTCCCCCACTTTGGTGAGTACTTTAAATTACTTGTTTGATCAACGTAGTTAGTGAATTAAAATAATGAGAGAAAACTAAATCCAGAAAGAGGTTTGCCCAGCATGACTCAACTCTATTGACAGATGGATTTATATGATAAGTAGTGGTCTTATTAGATTTGGAATTTCATCTAGCAAGCAGTAATTGTTGATATGGAGAAGGCCAAGAAACACCATTTTCTTAATTTGAACTTTTTAAAATGTCTTGCGGTGGGGGTTTGGGAAGGATGAGAAGACTGTAGAATACATTATTCATGCAGAAACTCTCTCTTTCCTATCTAGTTTATTTTACGTTAGAAGAGGCGAGACAGAAACTTTAGATCGAGGCTTAGTGATTTTTGACGAGAAGAGAGGCAATACTAGAAAGATAAGGTAGAGTGGGGCACTCATTTAGTGCCTAATGGTTAATGCTTGTTGGGATGGCAACATGGTGGGGCAGGTTAAGGTTATGCGGGATGTATGGGTTTAAACTTATGGGTAGTGGGTGGGTTCAAGCGTGTTTTTTAAAACTTCAAAGCCGTTGAGGGTTAGCACTTTGGACCAATTACAAATTAGCTAAATTTCTGCAACTTCAATCAATCACTTATTGCAGATGTCTGGACTTGCAAAATGTTAGCATAAAAATGATGATTTTCAAACACTTTTTATGACTCTGCCAAGGAACAGAGTAATTCATTTTTATATGTTAATTGAAAACATGAAGAAGGTAGCAATTTTTAGGAGGCACTGAGGCAGTACTGGTCAGGGAGGTGGGGGCAAAACTGGAGAACAGAAGTGAGAAAATATAAATGAAATGAATGCATTATTCTTCATCGAATTTATTCATCCAAGTTTTGAATGGAAGAGCTTGACATTTCTTATGATTTTTTTTGCTTATCGTCGGGTTTATTATCTTAGTTCCAAACCAATCTTTAAGATGTAATAACAGTTCATTTATCACATTCTTGTGTGATAAACAAATCATGGGACAAATGTTTTGAACTATCCCATGCTTTGAATTAAGTAGCTATGTGGCAGGGCAGATTTATGTGGGTTTGGGGGGGGGGGTATGGGGAGGGACAGGTTTGAAATAGAAGGTTTTCTGTGCGGAGCGGTGCGCATGGGTTAAAGTCTTTCGGGTGAATGCTGAACCTGCGTGGCAAACTCCCTGCCTTTCCCCGTTGCTATTCTACTTAATGATTCTCCGTGTGGCCTACTGCAGTTCTGAAAGAGCATTTTAGTGTTGCAACCGAATGGAATATTTCAGTAGATGCAGCTTTGAATCTAAAATGCCCAACTAAATTTCCCAATTTCAGTTTAATCTGTTGTAAAAAGCTAATTTTTGAAGCATGTTGCACCTATAGTAGCTTTTATATTGTATCATAGTGATTGCAAGTATGTTGGGTTTTTAAGTTCTGCTGGTTGTAGGGTGTGTTTGGTCTGTTTACAATTTCTAGGATTTCCTTGCTTGTCTTCATGTGGTTCAGTTTTGATGTAAAAACTCTTCAAATTTTCTTTGGTTGTAGGCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</genome_strand>
        <mrna_strand>CCAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG......................................................................................TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG.........................................................................................................................................CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330953" ref_strand="+" ref_description="SGN-U330953        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At4g30780.1); similar to hypothetical protein [Pinus pinaster] (GB:CAC84497.1) | chr2:10251966-10253999 FORWARD | Aliases: F27D4.1, F27D4_1(evalue: 4e-06, score=47) genbank/nr: gi|55773863|dbj|BAD72448.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 9e-05, score=48.5)">
      <seq>aggatcctgcaacagttcaagcgagtgagaactgtggtgatgtgtcggataaaagaagagttaatgaaataaatttcattcccaccgcaccgcttggaagaaaagatgaagaagattcttctatgccagaggatgaatcagctgatctctctagttgcaagccgacttcaacaatgtcaaggaaggactctgttggtgatctgttgctgaatcttcctaggatagcatcactgccccactttttgttcttatgcgatgattctacaggtaaccaggctagatagtcttagctcaagtctacatcaggtaaccatcgcaaaggatggctgtagttctcttgtatatattgaaaagctatgttagcaacagtactgtccagtttaggacttgaaactttgatgcatcattatagaactgttcaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58766" stop="59800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59066" g_stop="59485" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U330953" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59066" e_stop="59485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCCTGCAACAGTTCAAGCGAGTGAGAACTGTGGTGATGTGTCGGATGAAAGAAGAGTTAATGAAATAAATTTCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTC</genome_strand>
        <mrna_strand>AGGATCCTGCAACAGTTCAAGCGAGTGAGAACTGTGGTGATGTGTCGGATAAAAGAAGAGTTAATGAAATAAATTTCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319490" ref_strand="+" ref_description="SGN-U319490        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT1G51680.2 | Symbol: None | 4-coumarate--CoA ligase 1 / 4-coumaroyl-CoA synthase 1 (4CL1), identical to SP:Q42524 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana} | chr1:19163097-19165220 REVERSE | Aliases: None (evalue: 3e-99, score=358) genbank/nr: gi|1237183|dbj|BAA07828.1| 4-coumarate:coenzyme A ligase [Nicotiana tabacum] (evalue: 3e-138, score=494)">
      <seq>aaaagtcttcaacactttttctttattgctcttagcgagcccaaaatttcaaactatagtactacattttttttttattcttcttctcgtcaagtctcaaaagctaaatcaaaatgacaaatgcaacgatggagaacgaaacaaaacaagacgatataatttttcgatcgaagctccctgatatttacatccctaatcatcttccgttacactcgtattgtttcgaaaatatttcggaattcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaggcttctaatgctaagatcattgtcactcaatcgtgtcatgtgaacaaggtgaaggattatgcattggagaatggtgtgaagatcgtgtgtatcgatccggcccctgacggttgtgttcacttttctgagttgattcaggccgatgagcatgatatccctgaggtgaaaatccaacccgatgatgtggtggcgttgccgtattcctccggaacaacgggtttacctaaaggtgtcatgttgacacacaagggactagtcacaagtgtggcacaacaagttgatggtgaaaatccaaacttgtacatccatagtgaggatgtattgctttgtgtgttgcctttgtttcatatatattccctcaattccgttttgctatgtggattaagagttggagcagcaattttgattatgcaaaaatttgacattgttccattcttggaattaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68671" stop="70664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68971" g_stop="69626" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69627" i_stop="70077" i_length="451">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70078" g_stop="70364" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="943" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U319490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68971" e_stop="69626"/>
          <exon e_start="70078" e_stop="70364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAGGTAATACTGCGTGATCATCATATCTAAAAGTTTAAGTTAACGGAGAAAACGTATTTCTTTTAGTTATGTAATTATGTTATGTTGAGACTTTTTACTCTCCTTAGATGCAAACTTGGCTTTTTTTCACTGGTCAAACACGTGAAGATGTTTTTTTTTGCTTTTTTGGGTGATGATCATGGTGAATAAACCGAGGATTGTGCAGATTTGGTATATATCATGTTAAAATTGTATGACCAAGCTAGTATTAATTAGAGTGAACACATATAGATTATTAATTGCTTAATTATATAGTACTAAGTGGACAACATGCCTTATTTTGGGGGTTGATTCTTTTTTACTAGTCAAACTATGTGTGAATATTCTCTACTTTTTAGGTTCTATTGAGATTTTAAATCTATTTTAATACTATTTTGAGTTGTACGATCATTTTAACGGAGAGATGTCTGAACAGGTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAATCCAAACTTGTACATCCATAGTGAGGATGTATTGCTTTGTGTGTTGCCTTTGTTTCATATATATTCCCTCAATTCCGTTTTGCTATGTGGATTAAGAGTTGGAGCAGCAATTTTGATTATGCAAAAATTTGACATTGTTCCATTCTTGGAATTAATACA</genome_strand>
        <mrna_strand>AAAAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAATCCAAACTTGTACATCCATAGTGAGGATGTATTGCTTTGTGTGTTGCCTTTGTTTCATATATATTCCCTCAATTCCGTTTTGCTATGTGGATTAAGAGTTGGAGCAGCAATTTTGATTATGCAAAAATTTGACATTGTTCCATTCTTGGAATTAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336836" ref_strand="+" ref_description="SGN-U336836        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G21240.1 | Symbol: None | 4-coumarate--CoA ligase 2 / 4-coumaroyl-CoA synthase 2 (4CL2), identical to SP:Q9S725 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2) (4-coumaroyl-CoA synthase 2) {Arabidopsis thaliana} | chr3:7454282-7457385 REVERSE | Aliases: MXL8.10 (evalue: 6e-43, score=165) genbank/nr: gi|1237183|dbj|BAA07828.1| 4-coumarate:coenzyme A ligase [Nicotiana tabacum] (evalue: 2e-64, score=244)">
      <seq>attcaaatcgcgcccgtgtttaatcgacggggcgaataatcaaatttatacatacgctgatgttgagctcaattcgagaaaagttgctgctggtcttcataaacaatttgggatccaacaaaaggatactattatgatcttattgccaaattcaccagaatttgtgtatgtcttccttggtgcgtcgtacctcggcgcgatatcgacgatggctaatcctttgtttacgtctgctgaagttgtgaagcaagctaaaggttctaatggtaagaacattggcactccatcctggcatgggaaccaagggaaagaatatgcattggaaaatggtgggaagaacctggggatccattccggccctgaacggtggggtcacctttctgaagtgaatccaggccaagaacatgatattcctgaagggaaaatcccacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68909" stop="69936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69209" g_stop="69626" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U336836" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69209" e_stop="69626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG</genome_strand>
        <mrna_strand>ATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAAGGTTCTAATGGTAAGAACATTGGCACTCCATCCTGGCATGGGAACCAAGGGAAAGAATATGCATTGGAAAATGGTGGGAAGAACCTGGGGATCCATTCCGGCCCTGAACGGTGGGGTCACCTTTCTGAAGTGAATCCAGGCCAAGAACATGATATTCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320067" ref_strand="+" ref_description="SGN-U320067        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT3G21240.1 | Symbol: None | 4-coumarate--CoA ligase 2 / 4-coumaroyl-CoA synthase 2 (4CL2), identical to SP:Q9S725 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2) (4-coumaroyl-CoA synthase 2) {Arabidopsis thaliana} | chr3:7454282-7457385 REVERSE | Aliases: MXL8.10 (evalue: 3e-122, score=434) genbank/nr: 4-coumarate:coenzyme(evalue: 1e-144, score=515)">
      <seq>ttggaattaatacaaaattacaaggtgaccatagggccatttgtgccacctattgttttggctattgctaagagtcctatggttgataattatgatttatcatcggtaagaaccgttatgtctggggctgcaccattaggaaaagaacttgaagacactgttcgagccaaatttcctaatgctaaacttggtcaaggttacggaatgacagaagccggaccagtgttggctatgtgcttggcatttgctaaagaacccttcgaaattaaatctggagcatgtgggactgttgttagaaatgctcagatgaaaattgtggatcctgatactggcaaatctctccctaggaaccaatctggagagatttgtataagaggcgatcaaattatgaaaggttacctaaatgatccagaggccactacgggaacaatagacaaagaaaggtggttacatacgggcgatattggttatattgacatcgatgatgagcttttcattgtggatcgtttaaaggaattgataaaatacaaaggatttcaagtggctcctgctgaacttgaagcccttctcctcaatcatcccaatatttcagatgctgctgttgtttcaatgaaagacgagcaagcaggagaagttcctgtggcttttgttgtcagatcaaatggctccacaattactgaagatgaagtcaaagaattcataacaaagcaggtgatattctataaaaggataaagagggtattttttgtggatgttgttcctaaatctccatcgggcaaaatccttagaaaggacttgagagctaaattagctgctggatatccaaattaaatactacttcatactttaatggcgatcgaataactataaccaatatttttttttttgttattgaaagttacatatttttgttctttgaattgtatttgtacgttaaaccacctgcctctatacggttaaaattaattaaccaatttggcaaaaggagaaaaatgtatgtatatttgactgtaagggacttatttttttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70051" stop="73262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70351" g_stop="70545" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70546" i_stop="71340" i_length="795">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71341" g_stop="71539" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="394" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71540" i_stop="71950" i_length="411">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71951" g_stop="72164" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="608" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72165" i_stop="72259" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72260" g_stop="72362" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="711" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72363" i_stop="72637" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72638" g_stop="72969" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="1043" r_length="332" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U320067" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1043</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70351" e_stop="70545"/>
          <exon e_start="71341" e_stop="71539"/>
          <exon e_start="71951" e_stop="72164"/>
          <exon e_start="72260" e_stop="72362"/>
          <exon e_start="72638" e_stop="72969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAAGTAAGATTCTTATATCGTAGCAACTTCTTAATTAATATATTTTTATTTAAGTATACATTAATTTAGGTTATATATATGATTAGTTAATTGTTGATTTTGATTTGACTTGATCTAAGTTCAGATCTCCACGCACATTGGTGCTTAATTAATTGCTGATTATTTTACACTAATTATAGGGATTAATTAAGCTTGATTTCACATGTTAAGGCTTTTGTTTGAAATTTTCTATTTTTTCCCCCTAGAAATTAGTTGGTAAACGTCTAATCTCAAGTTGCTGAAAAGATCCAATCAATTAAAAAATATTGCAATGAAGCAACCCCACTTATTTTATTTATATATGACATAAAGAATATCTAAACCATCAAATGATTTATAATTTAATAGTTAATAAAATGTAATTATTTATTAAAAAAAAAAAAAACAGTCGTTAAAGCTTAAATTGAGTATCATATTTTTCTGTTCAGTTTGAAAAATCAAGAAATAATTTATCATTTAATTTTTAATTTACCCTTTCATTTACTTTAAACATTTTCAAACATATTTCATTTATTATATTTAGTAAGCCATTCTTTTTGTTACGTTTAAGGCTGTAACAAGTTCGTACAAGATAAGTAATATGTGAAATCACATTTTTGATATTGATATCCCAAGTCATATCTACCAATGAACAATTTTGTCAATTCAATTAAGACACAAATGATATTGATTTTCCTAGTCATATTTTACAACAAAGTAAGGTGACTTGCTTAATATGAGTAATTATTTTGATTGTGATTGTTTTTATTATATGTATAGGGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAGGTACGTTATCAAATGAACTATTAGCTGAGTAATTTTTCTATAATGTCGAATCATTATTTGCACAATAGTTTCCCAAATAAAACTTACATTCTTCCACTTTAGCACTTTAATGGGACTCAATATCTTAAATTGGAGCCAAAATATTATAAATGTGCATTTTTATATTTTTAAAATTATTTCCACTATTGATTATATATATTTGGTACAACTAATCCATAAAGTGTATGTCACAACTCACGACAATCACCTCGAGTGATATTGTTGGGCCACTAACCAAAAAATATATATTTAAATCTTTATGTCGTGATGGAACATAACTAATGAGTTTATATGATTTTTTTTTTCTAGATATTGAATTGATATGTAGTTGACTTTGAACTTGAATCAAATTAATATGAATATTGTATACAGGTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTCGTAAGTCAATAATTATAATAAAATCGCGCTATTGGCACGATTATGTTAATGCATCGAATTTTCGTAATTCTAATAATTGTTTAAAATTTGTGCAGAATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAGGTTAGTTTAATTCATTTATTTTCATTAGACGAATTTCATTAAATCAACATTATTTTTTTATTTAGTCGATTGACTATCTAAATTTTATTTTATTGGCGTTGTTCGTTTTTCTAACTTAGTTCCTTCACTTGCCCCGATGTGATAAAATATATTTTGAAAAAAGATTAATAAATTTTGGTCCTTCACTTGATATAATTACTATGTACTTTTAGTAACATTTGTATCATAAAAAAATGGGCTTTTCTAATTTTTGTTATTTTAAATTGATTTTTCAGGTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACTGTAAGGGACTTATTTTTTTTTTTAAATGTCTCA</genome_strand>
        <mrna_strand>TTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC...............................................................................................AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG...................................................................................................................................................................................................................................................................................GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACTGTAAGGGACTTATTTTTTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329695" ref_strand="+" ref_description="SGN-U329695        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | ovule development protein, putative, similar to ovule development protein AINTEGUMENTA (GI:1209099)(Arabidopsis thaliana) | chr1:5508501-5511729 FORWARD | Aliases: T24D18.16, T24D18_16(evalue: 2e-56, score=214) genbank/nr: gi|18394319|ref|NP_563990.1| ovule development protein, putative [Arabidopsis thaliana] gi|15028185|gb|AAK76589.1| unknown protein [Arabidopsis thaliana] gi|22136940|gb|AAM91814.1| unknown protein [Arabidopsis thaliana](evalue: 1e-54, score=214)">
      <seq>atttacttcactatatttgggcaaactttcaaataatatatatggcgaaaacctcaaaattgagtaaacaaaacacttgtttaagcaacaaggatactgataatagcatttctaaagtgaagacgaagcgaaaacccagagactcgccgcctcaacgacgtagttcaatatacagaggtgtcaccaggcacagatggacgggtcgatatgaagctcatttatgggataaaaattgttggaacgaatcgcagactaaaaaaggaagacaagtatacttgggggcctacaatgaggaagaagcagctgcacatgcatatgacttggcagcattaaagtattggggtcaacacacaatccttaatttctctgtgtctacttatgaaaaagagataaaagaaatggaaactcaatcaagagaagaatatattggttctttgagaaggagaagtagtggattttcaagaggagtctcgagatatagaggagtagcaagacaccatcacaatggacgatgggaggctcgcattggcagggtgtttggaaataagtatctctaccttggaacatatgctagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97497" stop="99303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97797" g_stop="97983" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97984" i_stop="98062" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98063" g_stop="98145" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="270" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98146" i_stop="98389" i_length="244">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98390" g_stop="98398" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="279" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98399" i_stop="98579" i_length="181">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98580" g_stop="98668" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="368" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98669" i_stop="98807" i_length="139">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98808" g_stop="98881" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="442" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98882" i_stop="98953" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98954" g_stop="99088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="577" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U329695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97797" e_stop="97983"/>
          <exon e_start="98063" e_stop="98145"/>
          <exon e_start="98390" e_stop="98398"/>
          <exon e_start="98580" e_stop="98668"/>
          <exon e_start="98808" e_stop="98881"/>
          <exon e_start="98954" e_stop="99088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACTTCACTATATTTGGGCAAACTTTCAAATAATATATATGGCGAAAACCTCAAAATTGAGTAAACAAAACACTTGTTTAAGCAACAAGGATACTGATAATAGCATTTCTAAAGTGAAGACGAAGCGAAAACCCAGAGACTCGCCGCCTCAACGACGTAGTTCAATATACAGAGGTGTCACCAGGTATGTATATATATATACATACTTATACATATATTCGTTTACGACGATGATAAGTTTGCTGTATTTTTTTTCCTATTAGGCACAGATGGACGGGTCGATATGAAGCTCATTTATGGGATAAAAATTGTTGGAACGAATCGCAGACTAAAAAAGGAAGACAAGGTTCGTGTTTTTTTTTTTTTTTGTATAATATCGAAAATAAGAAAGTTTACCTGCTATAATCGATATTTTATTGATAATTTGATATGATGTATTTAGTTTAACTATTTGTTAATTTGTAATTAATTTCCTATTTAGTGATCATTATTTTATTACGATATTGTTCAACACATCTGATCGGAGTTTTTTTTCCTTTTTGTTGCTCTTGATTAAATGGTGGTCGTGATGACATCCAATTAAAATTCAGTATACTTGGGTAAGTTTTCTATCATTATCATTCAAATAAAAAATTAATTTCTGTTTTGGAATTATTAAGCAATATTTTAATGAAATATTACAATTTTTAAAAAGGAAGGTTTAATTAAATTTGTTTAAGGAAATTTAGTTTTGCTAGCAGCTTGCCAAAATTGAATGAAATCTTATCTTATTTTTTAAAGGGGCCTACAATGAGGAAGAAGCAGCTGCACATGCATATGACTTGGCAGCATTAAAGTATTGGGGTCAACACACAATCCTTAATTTCTCTGTAATTTATATAATCTTTCATCTTCTATTTAATTATATACTCAATATATTAATCTTTGTTAGTGCAAATTTATGTTCTATGATCACTAATTACATTCCTGATTTGTATTTTCTTTTGCTACGAATTATAATTAATGTAGGTGTCTACTTATGAAAAAGAGATAAAAGAAATGGAAACTCAATCAAGAGAAGAATATATTGGTTCTTTGAGAAGGTATGTATAGAAAAATAAAGGTTCCAATTATATTTTTGTACTAATTTAAGTAATGAGTGTTTTATTTTGAAGGAGAAGTAGTGGATTTTCAAGAGGAGTCTCGAGATATAGAGGAGTAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATTTACTTCACTATATTTGGGCAAACTTTCAAATAATATATATGGCGAAAACCTCAAAATTGAGTAAACAAAACACTTGTTTAAGCAACAAGGATACTGATAATAGCATTTCTAAAGTGAAGACGAAGCGAAAACCCAGAGACTCGCCGCCTCAACGACGTAGTTCAATATACAGAGGTGTCACCAG...............................................................................GCACAGATGGACGGGTCGATATGAAGCTCATTTATGGGATAAAAATTGTTGGAACGAATCGCAGACTAAAAAAGGAAGACAAG....................................................................................................................................................................................................................................................TATACTTGG.....................................................................................................................................................................................GGGCCTACAATGAGGAAGAAGCAGCTGCACATGCATATGACTTGGCAGCATTAAAGTATTGGGGTCAACACACAATCCTTAATTTCTCT...........................................................................................................................................GTGTCTACTTATGAAAAAGAGATAAAAGAAATGGAAACTCAATCAAGAGAAGAATATATTGGTTCTTTGAGAAG........................................................................GAGAAGTAGTGGATTTTCAAGAGGAGTCTCGAGATATAGAGGAGTAGCAAGACACCATCACAATGGACGATGGGAGGCTCGCATTGGCAGGGTGTTTGGAAATAAGTATCTCTACCTTGGAACATATGCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U347046" ref_strand="+" ref_description="SGN-U347046        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:29971806-29975983 REVERSE | Aliases: F20B17.7, F20B17_7(evalue: 4e-110, score=394) genbank/nr: Protein(evalue: 3e-112, score=408)">
      <seq>tctacgtgaagtgctaaagggtttagaataccttcatgatcatggctacattcatcgggatgtcaaagctggaaatattctcattgattcacgtggtggaataaagttgggagatttcggtgtatcggcctacatgtttgattcaggtgacaggcagcatatgcggaatacatttgctggaactccttgttggatggcaccggaggtcatggagcaagtgcatggttacgatttcaaagctgatatttggtcttttggcataactgctttagagcttgctcatggacatgctcctttctcaaaataccctccaatgaaggtgttgctaatgacattgaaaaatgaacctccacgccttgattctgagagggacaggaagttctcgaagtcctttaggcaaatgattgctagttgcttggtaaaagatccttcaaaaaggcctacagccaaaaagttgttgaagcatcctttctttaaaaaagctaggtccaatgattatgtagcaagaacattgttggaaggcttgccatctcttggtgatcgcatgcaagaattgaagaggaaagaagaagaattgctagcacaaaagaagatgccagatgggcagaaagaagaaatgtcacagaatgaatataaacgtgggattagctgctggagctttgatgttgaagatttgaaggcacaggcttccttgattccagatgaggaaattattggtgagaatgaccacggggggagttcagatgcgctcgcaggagttgacaccaaggaaaccggcttcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123463" stop="127030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123763" g_stop="123829" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123830" i_stop="124202" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124203" g_stop="124327" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="192" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124328" i_stop="124555" i_length="228">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124556" g_stop="124600" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="237" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124601" i_stop="124704" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124705" g_stop="124786" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="319" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124787" i_stop="124869" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124870" g_stop="124938" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="388" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124939" i_stop="125012" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125013" g_stop="125183" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="559" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125184" i_stop="125306" i_length="123">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125307" g_stop="125372" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="625" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125373" i_stop="126281" i_length="909">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="126282" g_stop="126350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="694" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="126351" i_stop="126638" i_length="288">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="126639" g_stop="126730" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="785" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U347046" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U347046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123763" e_stop="123829"/>
          <exon e_start="124203" e_stop="124327"/>
          <exon e_start="124556" e_stop="124600"/>
          <exon e_start="124705" e_stop="124786"/>
          <exon e_start="124870" e_stop="124938"/>
          <exon e_start="125013" e_stop="125183"/>
          <exon e_start="125307" e_stop="125372"/>
          <exon e_start="126282" e_stop="126350"/>
          <exon e_start="126639" e_stop="126730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGTGAAGTGCTAAAGGGTTTAGAATACCTTCATGATCATGGCTACATTCATCGGGATGTCAAAGTATGTCCATCTGTTACATAAGTTTCTTTTCATTAGCCTTTATTAAAGAAATTGATGAGATACATCTTCAAGCATGAGGTTTCTGTAAAAAGTCTTCTGCCCTATTACATAGGGTGTCTATTGGACTTCTATTGCAACTTGCTAATTAATTTCATTTGAGGATCTCTTTGGAGTTTGGACATGGAACCAACAAAGAATATTTAGGATATGTTTGGTGTTTAACATCGCATGTGAATATAACAAAGGACAAATTCTTTACTTCTAGTGGTAATTTTAACCACATGGGCAGTTGAACATCATTAAGCTGTTCAGGACAATTACTTTTCTGGAACATTTGGAACTTGAGGTCACCATACTTGTATGGTTATTGTAGGCTGGAAATATTCTCATTGATTCACGTGGTGGAATAAAGTTGGGAGATTTCGGTGTATCGGCCTACATGTTTGATTCAGGTGACAGGCAGCATATGCGGAATACATTTGCTGGAACTCCTTGTTGGTATGCTTTAATTCAGAGATTGCTTCTGTCTTTTTCCCTATTCAGCTTATGTAATGCATATAATAGTTGATTAAGTGTTGAAGAACATTGGCATGTGTATACATAACACTGAGAATATTTTGCAATAGATGTGTGTACATTCAGTAAACTTGGACATTAAAAATACTGATAAGTTCAGATTCAAAGTACAAGTTGTTGTTTCTCCATAGTTTTATATTTCTTTTACAGGATGGCACCGGAGGTCATGGAGCAAGTGCATGGTTACGATTTCAAGTATCATTTCTGTGCATTTGAATATTCTGATTTTCTTGTACTTTTAAATTATATATTGGAAGTATTTTGTTTTTAAAATATATATTTTGAATGGTTCCCCACAGAGCTGATATTTGGTCTTTTGGCATAACTGCTTTAGAGCTTGCTCATGGACATGCTCCTTTCTCAAAATACCCTCCAATGAAGGTACCGACAGTCACATCCTACATATCCTTTCCTTGTGGATCCTTTCTGACCACAAATGCATTGCTTTTTTTTTCATTTTGCAGGTGTTGCTAATGACATTGAAAAATGAACCTCCACGCCTTGATTCTGAGAGGGACAGGAAGTTCTCGAAGGTATTTATCATACTATCAATGTTTATCCTTCAATGATGTTGTTAACATCTGTGCTATTCTTTTTTCCTTCTCAGTCCTTTAGGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAAAGGCCTACAGCCAAAAAGTTGTTGAAGCATCCTTTCTTTAAAAAAGCTAGGTCCAATGATTATGTAGCAAGAACATTGTTGGAAGGCTTGCCATCTCTTGGTGATCGCATGCAAGAATTGAAGGTCTGTTGCCATTCCATAATAAGATTCAAAATTCCCTCGTTTTTGAGGTCATATATGTTTCCATCTAAATGACAGCATAGCCTCAGTATTTCTATGGATACAACCACCTTTTCTTAATTGTAGAGGAAAGAAGAAGAATTGCTAGCACAAAAGAAGATGCCAGATGGGCAGAAAGAAGAAATGTCACAGGTTGGTGCGTCATAACCATAGCAATATCACTAGTTGACGACTCTGATGGTTTGATATATGTATACTATGATATTATATATTACAAGTGGCATTTGTGATTCTATAATCATAAGGATTTTTAGACCTGCATGAGCAATAATATATGATTGCTATACACACTGTTTCTAGAGTATGCATTCAGTATCCTGCTTGTTTTTATTCACACCCACATACATGTATATATATGCTAGGCTTGCATTTGACAATTAGATGGTTCCTTTTCTATTAAAAGTTCTTATTTCTCGTAAATATGTAACAGAAACAGAAAAGGAGAAAATCAGAAGTACAAGTGGCAACTCATACAACTCACTGGGTTAAATTGATATAGCAGATGAACTTATGTAATACTACTTTTTAGTGATTTAGACTTAAAACAGGATACTGGCAGTTTGCTGGGAAAAGAGATTGAGGGATTTTATTTAGTTTGGCATGCATAGTATTTTGCTATACTTTGTGCCTAATATAACATCATTTTCCACACAGTTCCAATAGATCTACTTCTAGGAATTTAAACAATACCACACCTATGTTTTCCCAGAAAAAGCTTCACTAGAATTTTAGGATTGCCACTTTATGGGAAAAGCCTTTTCTTAACTTGGAGGTTACTATTTGATAATTCAACCCAGACAGAGATCTATAGTACTAAGATACAACTTCTAGCTGACAGTAAAACAGAAAAGAACTTAACTACGTCTGATACAATAAATATGAAGAATTACGCTTAAAGCAAAGAAAAGAAACAAACTTAAAATCGTAATTGTTCCCAGCCATTTTTCTTTTTTTTTTCTGGCCTATAGTTAAGGTACATGTTTTGAAAGTCCCTTTTAACATCATAATTTGAACCTTACTCTGCTTCAACATCATGTGCAGAATGAATATAAACGTGGGATTAGCTGCTGGAGCTTTGATGTTGAAGATTTGAAGGCACAGGCTTCCTTGGTATTTGAACCTATATTTTATTGCACTTGTTCTAATAAAATATTCATACAAGTGTGCTTTAGCCTTTGATTTTCGATAAGAAATGCATGTGATGTGAAGAGGGCATAGTGGCGCTCTGGTTTTCTCAAACACAAATTTGTCAAGTCTTTTAAATATTAATGATTCACCTTCGCAACTGCTATAAGACGACTTCACATCTGGATTATCCTTTGTGGATTTTTTTCCCCCTAAAAGCAAGGGATATGCAAGTTTGCAACCAATATCATTTTTTCCTCTTTTTACTTTTAGATTCCAGATGAGGAAATTATTGGTGAGAATGACCACGGGGGGAGTTCAGATGCGCTCGCAGGAGTTGACAACCAAGGAAACCGGCTTCAATA</genome_strand>
        <mrna_strand>TCTACGTGAAGTGCTAAAGGGTTTAGAATACCTTCATGATCATGGCTACATTCATCGGGATGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................GCTGGAAATATTCTCATTGATTCACGTGGTGGAATAAAGTTGGGAGATTTCGGTGTATCGGCCTACATGTTTGATTCAGGTGACAGGCAGCATATGCGGAATACATTTGCTGGAACTCCTTGTTG....................................................................................................................................................................................................................................GATGGCACCGGAGGTCATGGAGCAAGTGCATGGTTACGATTTCAA........................................................................................................AGCTGATATTTGGTCTTTTGGCATAACTGCTTTAGAGCTTGCTCATGGACATGCTCCTTTCTCAAAATACCCTCCAATGAAG...................................................................................GTGTTGCTAATGACATTGAAAAATGAACCTCCACGCCTTGATTCTGAGAGGGACAGGAAGTTCTCGAAG..........................................................................TCCTTTAGGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAAAGGCCTACAGCCAAAAAGTTGTTGAAGCATCCTTTCTTTAAAAAAGCTAGGTCCAATGATTATGTAGCAAGAACATTGTTGGAAGGCTTGCCATCTCTTGGTGATCGCATGCAAGAATTGAAG...........................................................................................................................AGGAAAGAAGAAGAATTGCTAGCACAAAAGAAGATGCCAGATGGGCAGAAAGAAGAAATGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAATATAAACGTGGGATTAGCTGCTGGAGCTTTGATGTTGAAGATTTGAAGGCACAGGCTTCCTTG................................................................................................................................................................................................................................................................................................ATTCCAGATGAGGAAATTATTGGTGAGAATGACCACGGGGGGAGTTCAGATGCGCTCGCAGGAGTTGAC-ACCAAGGAAACCGGCTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329748" ref_strand="+" ref_description="SGN-U329748        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>agaaacaagtataaaaaaaaggggggaaaaggcaaccctagtgctggagttgaactcagttggaaagcagcccataccttcaccctaaaagtgggatgaaatttaaatctgttaactctggtatctcatttacaaagtcagttatctcctacactttgatgtagacttcacacaaatttttgtcactttgggcttttgttttctgttttatatttttgaagctcttcctgggaacgctcgagcctacacatcaagtaaacagacgcttcaagactactatttatgatatccaaaattaacaggcaagattaatgtataatcataatgataatacctccatcgtaaatcagcaacttcacgatgtaaatccctctccctgtcaagagctgcctccaactacagagaaagagagaagggtgttatatagtatgttggatcctccaagaaataaagaaacgagagaaattataggatagtaattcctggttatggttgaatttgcggaggatgtcgcaacaagattagtacaaatccataccagtgatttctctactccagctgaatttgatggattacatcctgcatccatggcaaggttagctgaacagatgaagttagacctttcatatagataagatacacaaaaattcaagaggcattagttgctgcacctgtggagtcggccacttgcctcattgcactaagaatactctcctgttaaaataaaaacagttttacaacgtttttaagcagaacaaaaaaacttagcaagtcataattttagatccattcttactcttccaataatagttgcctgtaaagcattctgcaacactgggaatatggactgggaagaatgattagctggtgtaggatcactcggcaatggttgagtagcagtcagattttctggagtcgcctgcataatccataacttcttttcataaaaacaataaagaaaacggaaaagaagctgagataagatcagtggtttaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="130371" stop="128772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130071" g_stop="129082" g_length="990"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="990" r_length="990" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="995" polyA_stop="1014"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U329748" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>990</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130071" e_stop="129082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTCTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</genome_strand>
        <mrna_strand>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTTTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340129" ref_strand="+" ref_description="SGN-U340129        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABC transporter family protein, similar to ABC transporters: GB:BAA77876 (Escherichia coli), GB:P07655 (Escherichia coli); contains Pfam profile: PF00005 ABC transporter | chr1:25481333-25482949 FORWARD | Aliases: T23K23.21, T23K23_21(evalue: 7e-54, score=207) genbank/nr: gi|15220604|ref|NP_176961.1| ABC transporter family protein [Arabidopsis thaliana] gi|25404687|pir||C96702 probable ABC transporter T23K23.21 [imported] - Arabidopsis thaliana gi|12324076|gb|AAG52004.1| putative ABC transporter; 66585-65723 [Arabidopsis thaliana] gi|21554406|gb|AAM63511.1| putative ABC transporter [Arabidopsis thaliana] gi|26450485|dbj|BAC42356.1| putative ABC transporter [Arabidopsis thaliana] gi|28827588|gb|AAO50638.1| putative ABC transporter protein [Arabidopsis thaliana](evalue: 5e-52, score=207)">
      <seq>cgagtttttttttttttttttttttagagaatatcattcttggtgatattaattcatatttctatttaaaacctttacaagaatttgccccgtttttcttggttgcgccatcggaaagattgtcgtgggaggtaaaataccttttttattaaagtgtatttttctacacgtagtttcagtagctaaattaacctcagttaagattggctcactcgaatgggttgagattcttccatattttggtgacttgaatctctcttgctaaccattatcatgcttctccgctagttcgtgccttgatgtactttccttgtccctggttctacttttcgcctaaaatacactaggagctgagttgaagaaatcttagtgccatgggatgcttaccttcagagagttgatcaggctttataatttccacaatgtccccatcaaccagcaggcacactatatcagctattctctgtatttgcttgatgctatgagaaactatcacaattgtcatcttctgatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="+" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97849" stop="130911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130093" g_stop="130611" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="+" ref_id="SGN-U340129" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130093" e_stop="130611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGAGTACATGTTGAAGTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTAGCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATCTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</genome_strand>
        <mrna_strand>CGAGTTT-TTTTTTTTTTTTTTTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTACCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATGTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330898" ref_strand="+" ref_description="SGN-U330898        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABC transporter family protein, similar to ABC transporters: GB:BAA77876 (Escherichia coli), GB:P07655 (Escherichia coli); contains Pfam profile: PF00005 ABC transporter | chr1:25481333-25482949 FORWARD | Aliases: T23K23.21, T23K23_21(evalue: 1e-28, score=83.6) genbank/nr: gi|15220604|ref|NP_176961.1| ABC transporter family protein [Arabidopsis thaliana] gi|25404687|pir||C96702 probable ABC transporter T23K23.21 [imported] - Arabidopsis thaliana gi|12324076|gb|AAG52004.1| putative ABC transporter; 66585-65723 [Arabidopsis thaliana] gi|21554406|gb|AAM63511.1| putative ABC transporter [Arabidopsis thaliana] gi|26450485|dbj|BAC42356.1| putative ABC transporter [Arabidopsis thaliana] gi|28827588|gb|AAO50638.1| putative ABC transporter protein [Arabidopsis thaliana](evalue: 7e-27, score=83.6)">
      <seq>aaagacttgtcttcttcatttggcacttctgtgtgcagataattaagtaactacactgaatctcagtttggtaactcacataccatggagatatcacaaagttggagcaaaattagtcctcagctccatagctcacactccttggagatttcattaggagaaagagggcatctactagcagtggaaatgaatgatattaaaggtgcaacagaaactaagattgaggttagggaactgaacaaggtatcagataagggtgattctatactgaagagtgttagagttgacataacaagaggagtaatcatggggattattggccccagtggtagcggaaaatcaacaattttacgagcgctaaatcgattatgggaacccctaagggcactgtttttcttgatggtactgatatttgtgatctggatgtgctctgtcttcgtcgtaaggttggcatgttgttccagcttccagttctctttgaaggtatggttgttaaattgctaagatcaaactaaaaacgctaacctattagtaaattagacagacttgaacttgaccaatttgaaagttcactgtgtctgatacnatcacagtaactactgatgcttgattcatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132229" stop="130662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131929" g_stop="131773" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131772" i_stop="131426" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131425" g_stop="130962" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="621" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U330898" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131929" e_stop="131773"/>
          <exon e_start="131425" e_stop="130962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAGGTATGTTGAAGCAAAACTCATCATCTATATGATTCTAGTGTACGTTATAATTAAAAAAAGGATCTAGTTAATCCATTTCAAGACTTCTTTTGGGGGGCCTTAGATAAATTCAGATTCACCATGAAAATTCTCACTTTTGATGGAATAGTTTGGGTGTGCCTCAACTAATTTTACGAATATGTGCTACCTCTAACCTTTCTTTTAATGTTTCATCAAAATGCTTTAACATAGATTATTTTCCTGCTAAGTAAAATAAAATGTTTTGTTGATGAATGATGAAATGTAATTGGACTTTAGAATTGTATAGTCATTTTTTCTTTCTTGAAATCTGTGACAATGGTGAGCAGGAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACAATCACAGTAACTACTGATGCTTGATTCATGAATAT</genome_strand>
        <mrna_strand>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG...........................................................................................................................................................................................................................................................................................................................................................GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACNATCACAGTAACTACTGATGCTTGATTCATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331528" ref_strand="+" ref_description="SGN-U331528        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ovule development protein, putative, similar to ovule development protein AINTEGUMENTA (GI:1209099)(Arabidopsis thaliana) | chr1:5508501-5511729 FORWARD | Aliases: T24D18.16, T24D18_16(evalue: 1e-09, score=59.7) genbank/nr: Similar(evalue: 7e-08, score=59.7)">
      <seq>aaattttgccatcagccgttacaacaattctttaggtgcaaaccctaatgacatgaatattcccatgcctaacacaaacaaagaagaaaagacatcgtcgtccgtcgtagactgcccggagacaccaccggaggtggagaaatgtaggaggattactacattcccagatgacatacaaacgtactttgactgccaagattccagtagtagctttgtggaggatagtcatattatttttggagatttagagtcatttgtgttgcctatgatgtttgaatcatgtcatcaacttgaggaatttttatctttttctccctactcagaatttgaactcgagacctctgattaaagttggagcaacctcacctcaccattgcaccacaattggttacgtgaagggtatatcaattgtttcttagttttgatattttgaagaattaattattgagtactttatttcaagagaggtgagaaattaagggtatagagtagtattatttatgtttcttagtaataaggtggttgtttaaactttaatgtttagatgaatgaggatcgtagagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0109C03-rdmSe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0109C03.1" temp_strand="-" temp_description="C06HBa0109C03.1  AC211045.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0109C03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="138740" stop="137574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138440" g_stop="137875" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C06HBa0109C03.1" gen_strand="-" ref_id="SGN-U331528" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0109C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138440" e_stop="137875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGACATCAGCCGTTACAACAATTCTTTAGGTGCAAACCCTAATGACATGAATATTCCCATGCCTAACACAAACAAAGAAGAAAAGACATCGTCGTCCGTCGTAGACTGCCCGGAGACACCACCGGAGGTGGAGAAATGTAGGAGGATTACTACATTCCCAGATGACATACAAACGTACTTTGACTGCCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGTAATTATGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGCTCGTAGAGTTT</genome_strand>
        <mrna_strand>AAATTTTGCCATCAGCCGTTACAACAATTCTTTAGGTGCAAACCCTAATGACATGAATATTCCCATGCCTAACACAAACAAAGAAGAAAAGACATCGTCGTCCGTCGTAGACTGCCCGGAGACACCACCGGAGGTGGAGAAATGTAGGAGGATTACTACATTCCCAGATGACATACAAACGTACTTTGACTGCCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGTAATAAGGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGATCGTAGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1042" PGL_stop="55"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1042" e_stop="721"/>
            <exon e_start="370" e_stop="55"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.994" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="1042" e_stop="721" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.994">
            <gDNA_intron_boundary i_start="720" i_stop="371" i_length="350"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="370" e_stop="55" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1042" stop="721"/>
              <exon start="370" stop="55"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTCAGGAAAGTGGATCTCTGGTACGATTGGCCTAACAAAAGGTACTTGCACATAAACCAATACCAATTGGGGAAAAAATTGTACGACGTTGAATGGCAGAACGGCACTTCATTTTACTTCACTTTGGATTCTACCCAGGAATGCACGGTCAAGCATTTCCCTGTGGGGATTTTGAGACCTAATTGGCTTGAAGGTGCGAATTATTTGGGCCAGAGGTATAAGGATGGATTTCTCTGTAATGTTTGGGAGAAGATTGATTTCCTACACTATTATGAAGATGTTGCTACCCAGATACCTGTTTATTGGCAGTTTTATGATG : GATTGATCGAACATATTATAACTTTTGAGGTGGGGAAAGTGCTGGAGGATTCTAAGTGGCAAGCCCCCGCTTACTGCTTCAAGGAGATGGAGAAAGGAAAGTTAACATTGCAAGATCGAAAAGTTGAAGACCACTCTCTTCTCGCTTTGTTTCATGACAGAAGATTTAAAAGTGACAAATGAACATAGATGTATGACAAAAATATACCTAGTGCCACTTGAATATGCCCATGTTTTGAGTTTGTAGTGCTAAATAGTTTGGGACAAATACACACACATTCCTTTGAACTTGCACTTTTATATGGCATGACATTTTA</gDNA_template>
            <first_frame> G  L  R  K  V  D  L  W  Y  D  W  P  N  K  R  Y  L  H  I  N  Q  Y  Q  L  G  K  K  L  Y  D  V  E  W  Q  N  G  T  S  F  Y  F  T  L  D  S  T  Q  E  C  T  V  K  H  F  P  V  G  I  L  R  P  N  W  L  E  G  A  N  Y  L  G  Q  R  Y  K  D  G  F  L  C  N  V  W  E  K  I  D  F  L  H  Y  Y  E  D  V  A  T  Q  I  P  V  Y  W  Q  F  Y  D   : G  L  I  E  H  I  I  T  F  E  V  G  K  V  L  E  D  S  K  W  Q  A  P  A  Y  C  F  K  E  M  E  K  G  K  L  T  L  Q  D  R  K  V  E  D  H  S  L  L  A  L  F  H  D  R  R  F  K  S  D  K  *  T  *  M  Y  D  K  N  I  P  S  A  T  *  I  C  P  C  F  E  F  V  V  L  N  S  L  G  Q  I  H  T  H  S  F  E  L  A  L  L  Y  G  M  T  F   </first_frame>
            <second_frame>  V  S  G  K  W  I  S  G  T  I  G  L  T  K  G  T  C  T  *  T  N  T  N  W  G  K  N  C  T  T  L  N  G  R  T  A  L  H  F  T  S  L  W  I  L  P  R  N  A  R  S  S  I  S  L  W  G  F  *  D  L  I  G  L  K  V  R  I  I  W  A  R  G  I  R  M  D  F  S  V  M  F  G  R  R  L  I  S  Y  T  I  M  K  M  L  L  P  R  Y  L  F  I  G  S  F  M  M  :  D  *  S  N  I  L  *  L  L  R  W  G  K  C  W  R  I  L  S  G  K  P  P  L  T  A  S  R  R  W  R  K  E  S  *  H  C  K  I  E  K  L  K  T  T  L  F  S  L  C  F  M  T  E  D  L  K  V  T  N  E  H  R  C  M  T  K  I  Y  L  V  P  L  E  Y  A  H  V  L  S  L  *  C  *  I  V  W  D  K  Y  T  H  I  P  L  N  L  H  F  Y  M  A  *  H  F  </second_frame>
            <third_frame>   S  Q  E  S  G  S  L  V  R  L  A  *  Q  K  V  L  A  H  K  P  I  P  I  G  E  K  I  V  R  R  *  M  A  E  R  H  F  I  L  L  H  F  G  F  Y  P  G  M  H  G  Q  A  F  P  C  G  D  F  E  T  *  L  A  *  R  C  E  L  F  G  P  E  V  *  G  W  I  S  L  *  C  L  G  E  D  *  F  P  T  L  L  *  R  C  C  Y  P  D  T  C  L  L  A  V  L  *  W :   I  D  R  T  Y  Y  N  F  *  G  G  E  S  A  G  G  F  *  V  A  S  P  R  L  L  L  Q  G  D  G  E  R  K  V  N  I  A  R  S  K  S  *  R  P  L  S  S  R  F  V  S  *  Q  K  I  *  K  *  Q  M  N  I  D  V  *  Q  K  Y  T  *  C  H  L  N  M  P  M  F  *  V  C  S  A  K  *  F  G  T  N  T  H  T  F  L  *  T  C  T  F  I  W  H  D  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1042" stop="721"/>
                    <exon start="370" stop="189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRKVDLWYDWPNKRYLHINQYQLGKKLYDVEWQNGTSFYFTLDSTQECTVKHFPVGILRPNWLEGANYLGQRYKDGFLCNVWEKIDFLHYYEDVATQIPVYWQFYDGLIEHIITFEVGKVLEDSKWQAPAYCFKEMEKGKLTLQDRKVEDHSLLALFHDRRFKSDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4855" PGL_stop="1608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4855" e_stop="4662"/>
            <exon e_start="3688" e_stop="3430"/>
            <exon e_start="2858" e_stop="2664"/>
            <exon e_start="2411" e_stop="1608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.865" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4855" e_stop="4662" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4661" i_stop="3689" i_length="973"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3688" e_stop="3430" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3429" i_stop="2859" i_length="571"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2858" e_stop="2664" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.865">
            <gDNA_intron_boundary i_start="2663" i_stop="2412" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="2411" e_stop="1608" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4855" stop="4662"/>
              <exon start="3688" stop="3430"/>
              <exon start="2858" stop="2664"/>
              <exon start="2411" stop="1608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGCTCTAAAACTCTGAAACCAAAACAAAATCTGGAAATGAGTAGTGAAACAAGGTGAAGAAGAATAGCTCGAGCTTAAAACCCTACTAGTCGAAGAATTAATGGGTAAAAAGGAGAGGGCGCAAGAGAGAAGAGAGCAGAGACGCCAAGAGATCTCTCTTCTCCGTACTATTCCTTATTCTGATCAACAAAG : ATGGTGGTCAAATGAAACTATCGCTGTCGTGACTGGTTCAAACAGAGGAATTGGTTTTGAAATTGCTCACCAACTGGCCTCACATGGCTTAACAGTAGTTCTTACATCACGAGAGACTCGTGTTGGTGAAGAAGCAACGAAAATCATGCAAGAAAAAGGTTTGAATGTGGTATTTCATCAATTGGATATTGTAGACCCTGTATCAGTTGAAACATTTTCTGACTGGATAAAGGAAAACTATGGTGGCTTAGATATACTG : ATCAATAATGCAGGAGTCAATTTCAATTTCGGCACAGATAATTCAGTGGAATATGCAGAAACTGTTATTCAGACCAACTACTTTGGCACCAAAAGTATGACTAAAGCTATGATTCCATTAATGAGGCCGTCTCCTTTTGGCGCTCGAATTGTTAATGTGACCTCACGACTGGGGAGACTTAACGGCAGAAGGAAT : AGAATTGCAAATGTCAGCTTGAGACAACAACTGGAGGATGTGGATTCTCTATCAGAGGAACTGATTGATAGTACTGTGAACTCATTTTTGGAACAAGTAAAAAATGGAACTTGGGAATCTGGGGGATGGCCACAAGTATTCACAGACTACTCATTGTCGAAGCTTGCTGCTAATGCTTACACCAGGCTAATGGCAAGAATACTTTCTGACCAGCCAGAGGGCCATAAGATATATATGAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGATTGGGCTGGGCATACATCTCCTGAAGTAGCTGCTGATACTGCAGTCTGGCTTGCTCTTACCTCAGATCAGATTGTGAGTGGTAAGTTTTTTGCTGAGAGGCGTGAAATAAACTTCTAAAGTGGGAATTGAAGACAAATTCAGGAATCAGCCCAGTTTCTTTTGCTTTTGAACGAAAATGTGATACGAGTACTTATAAAAACTAGAGTACTCATGTTACAAGATGCTAGCAAGAGCCTACTGAAAATTGATATTGTTAATGGGAAACAATATGTATTGGTACAAGTTGTTACCTAGTCGTCAAACTCTAGAGGATGTGTTAACTTTGGGGAGAGCTGAAGCCTGAAAGGGTGGTCTGGTTTTCTAATAATCACATCGACACATCCTAGATAAGATCATTTGCCTGTACCATTTGTAACTTTTAGTACAGATTAGCAATACATACTACAGCATATTGGATAGCTAACTACTTAAAATATGTCTTCTTTAATTATAAGCATTAGCTGTTTTAAAAGATCACTTAATCGA</gDNA_template>
            <first_frame> L  A  L  K  L  *  N  Q  N  K  I  W  K  *  V  V  K  Q  G  E  E  E  *  L  E  L  K  T  L  L  V  E  E  L  M  G  K  K  E  R  A  Q  E  R  R  E  Q  R  R  Q  E  I  S  L  L  R  T  I  P  Y  S  D  Q  Q  R :   W  W  S  N  E  T  I  A  V  V  T  G  S  N  R  G  I  G  F  E  I  A  H  Q  L  A  S  H  G  L  T  V  V  L  T  S  R  E  T  R  V  G  E  E  A  T  K  I  M  Q  E  K  G  L  N  V  V  F  H  Q  L  D  I  V  D  P  V  S  V  E  T  F  S  D  W  I  K  E  N  Y  G  G  L  D  I  L  :  I  N  N  A  G  V  N  F  N  F  G  T  D  N  S  V  E  Y  A  E  T  V  I  Q  T  N  Y  F  G  T  K  S  M  T  K  A  M  I  P  L  M  R  P  S  P  F  G  A  R  I  V  N  V  T  S  R  L  G  R  L  N  G  R  R  N  :  R  I  A  N  V  S  L  R  Q  Q  L  E  D  V  D  S  L  S  E  E  L  I  D  S  T  V  N  S  F  L  E  Q  V  K  N  G  T  W  E  S  G  G  W  P  Q  V  F  T  D  Y  S  L  S  K  L  A  A  N  A  Y  T  R  L  M  A  R  I  L  S  D  Q  P  E  G  H  K  I  Y  M  N  C  Y  C  P  G  W  V  K  T  A  M  T  D  W  A  G  H  T  S  P  E  V  A  A  D  T  A  V  W  L  A  L  T  S  D  Q  I  V  S  G  K  F  F  A  E  R  R  E  I  N  F  *  S  G  N  *  R  Q  I  Q  E  S  A  Q  F  L  L  L  L  N  E  N  V  I  R  V  L  I  K  T  R  V  L  M  L  Q  D  A  S  K  S  L  L  K  I  D  I  V  N  G  K  Q  Y  V  L  V  Q  V  V  T  *  S  S  N  S  R  G  C  V  N  F  G  E  S  *  S  L  K  G  W  S  G  F  L  I  I  T  S  T  H  P  R  *  D  H  L  P  V  P  F  V  T  F  S  T  D  *  Q  Y  I  L  Q  H  I  G  *  L  T  T  *  N  M  S  S  L  I  I  S  I  S  C  F  K  R  S  L  N  R </first_frame>
            <second_frame>  L  L  *  N  S  E  T  K  T  K  S  G  N  E  *  *  N  K  V  K  K  N  S  S  S  L  K  P  Y  *  S  K  N  *  W  V  K  R  R  G  R  K  R  E  E  S  R  D  A  K  R  S  L  F  S  V  L  F  L  I  L  I  N  K   : D  G  G  Q  M  K  L  S  L  S  *  L  V  Q  T  E  E  L  V  L  K  L  L  T  N  W  P  H  M  A  *  Q  *  F  L  H  H  E  R  L  V  L  V  K  K  Q  R  K  S  C  K  K  K  V  *  M  W  Y  F  I  N  W  I  L  *  T  L  Y  Q  L  K  H  F  L  T  G  *  R  K  T  M  V  A  *  I  Y  * :   S  I  M  Q  E  S  I  S  I  S  A  Q  I  I  Q  W  N  M  Q  K  L  L  F  R  P  T  T  L  A  P  K  V  *  L  K  L  *  F  H  *  *  G  R  L  L  L  A  L  E  L  L  M  *  P  H  D  W  G  D  L  T  A  E  G  I :   E  L  Q  M  S  A  *  D  N  N  W  R  M  W  I  L  Y  Q  R  N  *  L  I  V  L  *  T  H  F  W  N  K  *  K  M  E  L  G  N  L  G  D  G  H  K  Y  S  Q  T  T  H  C  R  S  L  L  L  M  L  T  P  G  *  W  Q  E  Y  F  L  T  S  Q  R  A  I  R  Y  I  *  I  A  I  A  Q  V  G  *  R  L  P  *  L  I  G  L  G  I  H  L  L  K  *  L  L  I  L  Q  S  G  L  L  L  P  Q  I  R  L  *  V  V  S  F  L  L  R  G  V  K  *  T  S  K  V  G  I  E  D  K  F  R  N  Q  P  S  F  F  C  F  *  T  K  M  *  Y  E  Y  L  *  K  L  E  Y  S  C  Y  K  M  L  A  R  A  Y  *  K  L  I  L  L  M  G  N  N  M  Y  W  Y  K  L  L  P  S  R  Q  T  L  E  D  V  L  T  L  G  R  A  E  A  *  K  G  G  L  V  F  *  *  S  H  R  H  I  L  D  K  I  I  C  L  Y  H  L  *  L  L  V  Q  I  S  N  T  Y  Y  S  I  L  D  S  *  L  L  K  I  C  L  L  *  L  *  A  L  A  V  L  K  D  H  L  I   </second_frame>
            <third_frame>   C  S  K  T  L  K  P  K  Q  N  L  E  M  S  S  E  T  R  *  R  R  I  A  R  A  *  N  P  T  S  R  R  I  N  G  *  K  G  E  G  A  R  E  K  R  A  E  T  P  R  D  L  S  S  P  Y  Y  S  L  F  *  S  T  K  :  M  V  V  K  *  N  Y  R  C  R  D  W  F  K  Q  R  N  W  F  *  N  C  S  P  T  G  L  T  W  L  N  S  S  S  Y  I  T  R  D  S  C  W  *  R  S  N  E  N  H  A  R  K  R  F  E  C  G  I  S  S  I  G  Y  C  R  P  C  I  S  *  N  I  F  *  L  D  K  G  K  L  W  W  L  R  Y  T   : D  Q  *  C  R  S  Q  F  Q  F  R  H  R  *  F  S  G  I  C  R  N  C  Y  S  D  Q  L  L  W  H  Q  K  Y  D  *  S  Y  D  S  I  N  E  A  V  S  F  W  R  S  N  C  *  C  D  L  T  T  G  E  T  *  R  Q  K  E   : *  N  C  K  C  Q  L  E  T  T  T  G  G  C  G  F  S  I  R  G  T  D  *  *  Y  C  E  L  I  F  G  T  S  K  K  W  N  L  G  I  W  G  M  A  T  S  I  H  R  L  L  I  V  E  A  C  C  *  C  L  H  Q  A  N  G  K  N  T  F  *  P  A  R  G  P  *  D  I  Y  E  L  L  L  P  R  L  G  E  D  C  H  D  *  L  G  W  A  Y  I  S  *  S  S  C  *  Y  C  S  L  A  C  S  Y  L  R  S  D  C  E  W  *  V  F  C  *  E  A  *  N  K  L  L  K  W  E  L  K  T  N  S  G  I  S  P  V  S  F  A  F  E  R  K  C  D  T  S  T  Y  K  N  *  S  T  H  V  T  R  C  *  Q  E  P  T  E  N  *  Y  C  *  W  E  T  I  C  I  G  T  S  C  Y  L  V  V  K  L  *  R  M  C  *  L  W  G  E  L  K  P  E  R  V  V  W  F  S  N  N  H  I  D  T  S  *  I  R  S  F  A  C  T  I  C  N  F  *  Y  R  L  A  I  H  T  T  A  Y  W  I  A  N  Y  L  K  Y  V  F  F  N  Y  K  H  *  L  F  *  K  I  T  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4786" stop="4662"/>
                    <exon start="3688" stop="3430"/>
                    <exon start="2858" stop="2664"/>
                    <exon start="2411" stop="2016"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LELKTLLVEELMGKKERAQERREQRRQEISLLRTIPYSDQQRWWSNETIAVVTGSNRGIGFEIAHQLASHGLTVVLTSRETRVGEEATKIMQEKGLNVVFHQLDIVDPVSVETFSDWIKENYGGLDILINNAGVNFNFGTDNSVEYAETVIQTNYFGTKSMTKAMIPLMRPSPFGARIVNVTSRLGRLNGRRNRIANVSLRQQLEDVDSLSEELIDSTVNSFLEQVKNGTWESGGWPQVFTDYSLSKLAANAYTRLMARILSDQPEGHKIYMNCYCPGWVKTAMTDWAGHTSPEVAADTAVWLALTSDQIVSGKFFAERREINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15418" PGL_stop="16858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15418" e_stop="16027"/>
            <exon e_start="16121" e_stop="16211"/>
            <exon e_start="16331" e_stop="16858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.165" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15418" e_stop="16027" e_length="610"/>
          </exon>
          <intron i_serial="1" don_prob="0.165" acc_prob="0.925">
            <gDNA_intron_boundary i_start="16028" i_stop="16120" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16121" e_stop="16211" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.879">
            <gDNA_intron_boundary i_start="16212" i_stop="16330" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16331" e_stop="16858" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15418" stop="16027"/>
              <exon start="16121" stop="16211"/>
              <exon start="16331" stop="16858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTCATACCGGAAGGCATCAGTAAGCATGTTCATGCATCCAAATACCTGATTGCAGGGGGAGTTGCAGGAGCTGCTTCGCGTACTGCCACAGCACCTCTTGATCGCGTTAAGGTCATTTTACAAGTGCAAACAACTCATGCTTCAATTGGTCCTGCAGTCAAAAGCATATGGAAGGAAGGTGGTCTATTGGGGTTTTTCCGTGGCAATGGGCTAAATGTGTTGAAGGTTGCACCAGAAAGTGCAATTAAATTTTACGCATATGAAACCTTGAAAAATGCTATTGGTCGTGCCAGGGGTGTTGAAGATCAGAGAGACATAGGAACTTCTGGGCGTCTTGTGGCTGGTGGAATGGCAGGTGCAATAGCACAAACTGCTATATATCCCATGGATCTTGTTAAAACTCGGTTACAGACTCATTCATGTGAGAGTGGAAGCGTTCCTAGTCTGCGAAAACTATCAAAAGATATTTTTATACAAGAGGGACCTCGGGCATTTTATAGAGGATTGGTACCATCTCTGCTTGGAATCATCCCTTATGCAGGCATTGATTTAGCTGCATATGAAACTTTAAAGGATTTGTCAAAGGTTTACATTCTTCATGATAGTG : AAGCCGGCCCTCTTGTGCAACTGGGATGTGGGACTATTTCAGGAGCCCTGGGAGCAACATGTGTTTATCCTTTGCAGGTTATTCGGACCAG : AATGCAAGCTGATTCTGCATACCAAGGTATGGCTGATGTGTTCCGAAAAACAGTTCAGCGTGAAGGCTTCAGGGGATTCTACAAAGGACTTTTTCCAAATCTTTTAAAAGTTGTGCCAGCAGCAAGCATAACCTATCTTGTGTACGAATCAATGAAAAAGAGTCTAGATCTTGATTAGCTGACATAGAGTCAGCAGCAGATTTCAGGTTCAAACTGCTGATGAAGATGATGATGATAATGTGACATTAAATAAGATAAATTTAGCTCATTGGTGATATGATTATCAAAATCATACACCTGATTTTTGACTCCCCATTGGTTATCGATATCGGCGGGGTTATAGTTATAGAGTTTTGTTTGTAGATTCAACTGACAAAATGACTACGTTGGCAATTGAGAATAGTCCTCTTTTACAATGTATGTCTGAGTTATAGGAATATCAATTCTACACTTTTTGGCAACTACATGTTAAATGAAAAAAGTGATGTGCTGACTTTTTAAGGTTTTTGCTATATGGATTATATGCAA</gDNA_template>
            <first_frame> T  V  I  P  E  G  I  S  K  H  V  H  A  S  K  Y  L  I  A  G  G  V  A  G  A  A  S  R  T  A  T  A  P  L  D  R  V  K  V  I  L  Q  V  Q  T  T  H  A  S  I  G  P  A  V  K  S  I  W  K  E  G  G  L  L  G  F  F  R  G  N  G  L  N  V  L  K  V  A  P  E  S  A  I  K  F  Y  A  Y  E  T  L  K  N  A  I  G  R  A  R  G  V  E  D  Q  R  D  I  G  T  S  G  R  L  V  A  G  G  M  A  G  A  I  A  Q  T  A  I  Y  P  M  D  L  V  K  T  R  L  Q  T  H  S  C  E  S  G  S  V  P  S  L  R  K  L  S  K  D  I  F  I  Q  E  G  P  R  A  F  Y  R  G  L  V  P  S  L  L  G  I  I  P  Y  A  G  I  D  L  A  A  Y  E  T  L  K  D  L  S  K  V  Y  I  L  H  D  S   : E  A  G  P  L  V  Q  L  G  C  G  T  I  S  G  A  L  G  A  T  C  V  Y  P  L  Q  V  I  R  T  R :   M  Q  A  D  S  A  Y  Q  G  M  A  D  V  F  R  K  T  V  Q  R  E  G  F  R  G  F  Y  K  G  L  F  P  N  L  L  K  V  V  P  A  A  S  I  T  Y  L  V  Y  E  S  M  K  K  S  L  D  L  D  *  L  T  *  S  Q  Q  Q  I  S  G  S  N  C  *  *  R  *  *  *  *  C  D  I  K  *  D  K  F  S  S  L  V  I  *  L  S  K  S  Y  T  *  F  L  T  P  H  W  L  S  I  S  A  G  L  *  L  *  S  F  V  C  R  F  N  *  Q  N  D  Y  V  G  N  *  E  *  S  S  F  T  M  Y  V  *  V  I  G  I  S  I  L  H  F  L  A  T  T  C  *  M  K  K  V  M  C  *  L  F  K  V  F  A  I  W  I  I  C   </first_frame>
            <second_frame>  Q  S  Y  R  K  A  S  V  S  M  F  M  H  P  N  T  *  L  Q  G  E  L  Q  E  L  L  R  V  L  P  Q  H  L  L  I  A  L  R  S  F  Y  K  C  K  Q  L  M  L  Q  L  V  L  Q  S  K  A  Y  G  R  K  V  V  Y  W  G  F  S  V  A  M  G  *  M  C  *  R  L  H  Q  K  V  Q  L  N  F  T  H  M  K  P  *  K  M  L  L  V  V  P  G  V  L  K  I  R  E  T  *  E  L  L  G  V  L  W  L  V  E  W  Q  V  Q  *  H  K  L  L  Y  I  P  W  I  L  L  K  L  G  Y  R  L  I  H  V  R  V  E  A  F  L  V  C  E  N  Y  Q  K  I  F  L  Y  K  R  D  L  G  H  F  I  E  D  W  Y  H  L  C  L  E  S  S  L  M  Q  A  L  I  *  L  H  M  K  L  *  R  I  C  Q  R  F  T  F  F  M  I  V  :  K  P  A  L  L  C  N  W  D  V  G  L  F  Q  E  P  W  E  Q  H  V  F  I  L  C  R  L  F  G  P   : E  C  K  L  I  L  H  T  K  V  W  L  M  C  S  E  K  Q  F  S  V  K  A  S  G  D  S  T  K  D  F  F  Q  I  F  *  K  L  C  Q  Q  Q  A  *  P  I  L  C  T  N  Q  *  K  R  V  *  I  L  I  S  *  H  R  V  S  S  R  F  Q  V  Q  T  A  D  E  D  D  D  D  N  V  T  L  N  K  I  N  L  A  H  W  *  Y  D  Y  Q  N  H  T  P  D  F  *  L  P  I  G  Y  R  Y  R  R  G  Y  S  Y  R  V  L  F  V  D  S  T  D  K  M  T  T  L  A  I  E  N  S  P  L  L  Q  C  M  S  E  L  *  E  Y  Q  F  Y  T  F  W  Q  L  H  V  K  *  K  K  *  C  A  D  F  L  R  F  L  L  Y  G  L  Y  A  </second_frame>
            <third_frame>   S  H  T  G  R  H  Q  *  A  C  S  C  I  Q  I  P  D  C  R  G  S  C  R  S  C  F  A  Y  C  H  S  T  S  *  S  R  *  G  H  F  T  S  A  N  N  S  C  F  N  W  S  C  S  Q  K  H  M  E  G  R  W  S  I  G  V  F  P  W  Q  W  A  K  C  V  E  G  C  T  R  K  C  N  *  I  L  R  I  *  N  L  E  K  C  Y  W  S  C  Q  G  C  *  R  S  E  R  H  R  N  F  W  A  S  C  G  W  W  N  G  R  C  N  S  T  N  C  Y  I  S  H  G  S  C  *  N  S  V  T  D  S  F  M  *  E  W  K  R  S  *  S  A  K  T  I  K  R  Y  F  Y  T  R  G  T  S  G  I  L  *  R  I  G  T  I  S  A  W  N  H  P  L  C  R  H  *  F  S  C  I  *  N  F  K  G  F  V  K  G  L  H  S  S  *  *  * :   S  R  P  S  C  A  T  G  M  W  D  Y  F  R  S  P  G  S  N  M  C  L  S  F  A  G  Y  S  D  Q  :  N  A  S  *  F  C  I  P  R  Y  G  *  C  V  P  K  N  S  S  A  *  R  L  Q  G  I  L  Q  R  T  F  S  K  S  F  K  S  C  A  S  S  K  H  N  L  S  C  V  R  I  N  E  K  E  S  R  S  *  L  A  D  I  E  S  A  A  D  F  R  F  K  L  L  M  K  M  M  M  I  M  *  H  *  I  R  *  I  *  L  I  G  D  M  I  I  K  I  I  H  L  I  F  D  S  P  L  V  I  D  I  G  G  V  I  V  I  E  F  C  L  *  I  Q  L  T  K  *  L  R  W  Q  L  R  I  V  L  F  Y  N  V  C  L  S  Y  R  N  I  N  S  T  L  F  G  N  Y  M  L  N  E  K  S  D  V  L  T  F  *  G  F  C  Y  M  D  Y  M  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15418" stop="16027"/>
                    <exon start="16121" stop="16211"/>
                    <exon start="16331" stop="16508"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVIPEGISKHVHASKYLIAGGVAGAASRTATAPLDRVKVILQVQTTHASIGPAVKSIWKEGGLLGFFRGNGLNVLKVAPESAIKFYAYETLKNAIGRARGVEDQRDIGTSGRLVAGGMAGAIAQTAIYPMDLVKTRLQTHSCESGSVPSLRKLSKDIFIQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDLSKVYILHDSEAGPLVQLGCGTISGALGATCVYPLQVIRTRMQADSAYQGMADVFRKTVQREGFRGFYKGLFPNLLKVVPAASITYLVYESMKKSLDLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25519" PGL_stop="24325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25519" e_stop="25414"/>
            <exon e_start="25309" e_stop="25085"/>
            <exon e_start="24970" e_stop="24737"/>
            <exon e_start="24525" e_stop="24325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.252" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="25519" e_stop="25414" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25413" i_stop="25310" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25309" e_stop="25085" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.252">
            <gDNA_intron_boundary i_start="25084" i_stop="24971" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24970" e_stop="24737" e_length="234"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24736" i_stop="24526" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="24525" e_stop="24325" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25519" stop="25414"/>
              <exon start="25309" stop="25085"/>
              <exon start="24970" stop="24737"/>
              <exon start="24525" stop="24325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGATCCAGATGATCTTTCGTCCAGGGACATCATGTTAGGTGATCCATTTTCAGTTGATATTACAAAACTCACTGTTGGGTATCTCGAAGACGCTGACAAGGAA : GTTGTTGGTGTACTTAGATCAAAGGGAGTGAATATGGTTCCATTTAATCTGGATTACACTGTTGATAGTGCTCAAGGTATTGTTAGCTTCACTATGGATGTTGACATGCTAGCTCATTTTGACGAGTGGCAGCGCTCAAACCAGGATGATGAATTTGAAGCTCAAGACCAATGGCCTCTTGAACTTCGTCGTGCCCGTGTTATATCTGCTGTAGACTATATTCAG : GCACAGAGAAGTCGAAGCAAATTGATTCAGGAAGTGAAAGAGAACTTCACAGTTGATGCATTTATTGGAGATTCAGGTGACTGGGAGAAAGTTTGTGTGGGCAATCTTGTGGGTATGCCAGTAGTGGTGGTTCCAACAGGTTTTAAGAAGATATCCAATGCATCGTCTGATGATACTCGCAGGAAGACAACAATAACTACTGGCATTTATGCTCCTCCTGACCACGATCATGTT : GCTTTAGCATTGGCAATGGCGTATCAGTCACTAACCAACCATCACAAGCAGCGCCCTCCAATTGACGACATTGGGCCAAATGATTCAATTCCAAACCCACCCACTTCCACTGTACCCGCAAGACAACTACGTGATTACTAATCTCTCAAGGGTATTCAATGTCACTCTGTGTTGTCCTTTTAACTTGTTATTATAGATGTA</gDNA_template>
            <first_frame> K  G  S  R  *  S  F  V  Q  G  H  H  V  R  *  S  I  F  S  *  Y  Y  K  T  H  C  W  V  S  R  R  R  *  Q  G   : S  C  W  C  T  *  I  K  G  S  E  Y  G  S  I  *  S  G  L  H  C  *  *  C  S  R  Y  C  *  L  H  Y  G  C  *  H  A  S  S  F  *  R  V  A  A  L  K  P  G  *  *  I  *  S  S  R  P  M  A  S  *  T  S  S  C  P  C  Y  I  C  C  R  L  Y  S   : G  T  E  K  S  K  Q  I  D  S  G  S  E  R  E  L  H  S  *  C  I  Y  W  R  F  R  *  L  G  E  S  L  C  G  Q  S  C  G  Y  A  S  S  G  G  S  N  R  F  *  E  D  I  Q  C  I  V  *  *  Y  S  Q  E  D  N  N  N  Y  W  H  L  C  S  S  *  P  R  S  C   : C  F  S  I  G  N  G  V  S  V  T  N  Q  P  S  Q  A  A  P  S  N  *  R  H  W  A  K  *  F  N  S  K  P  T  H  F  H  C  T  R  K  T  T  T  *  L  L  I  S  Q  G  Y  S  M  S  L  C  V  V  L  L  T  C  Y  Y  R  C  </first_frame>
            <second_frame>  K  D  P  D  D  L  S  S  R  D  I  M  L  G  D  P  F  S  V  D  I  T  K  L  T  V  G  Y  L  E  D  A  D  K  E  :  V  V  G  V  L  R  S  K  G  V  N  M  V  P  F  N  L  D  Y  T  V  D  S  A  Q  G  I  V  S  F  T  M  D  V  D  M  L  A  H  F  D  E  W  Q  R  S  N  Q  D  D  E  F  E  A  Q  D  Q  W  P  L  E  L  R  R  A  R  V  I  S  A  V  D  Y  I  Q  :  A  Q  R  S  R  S  K  L  I  Q  E  V  K  E  N  F  T  V  D  A  F  I  G  D  S  G  D  W  E  K  V  C  V  G  N  L  V  G  M  P  V  V  V  V  P  T  G  F  K  K  I  S  N  A  S  S  D  D  T  R  R  K  T  T  I  T  T  G  I  Y  A  P  P  D  H  D  H  V  :  A  L  A  L  A  M  A  Y  Q  S  L  T  N  H  H  K  Q  R  P  P  I  D  D  I  G  P  N  D  S  I  P  N  P  P  T  S  T  V  P  A  R  Q  L  R  D  Y  *  S  L  K  G  I  Q  C  H  S  V  L  S  F  *  L  V  I  I  D  V </second_frame>
            <third_frame>   R  I  Q  M  I  F  R  P  G  T  S  C  *  V  I  H  F  Q  L  I  L  Q  N  S  L  L  G  I  S  K  T  L  T  R  K :   L  L  V  Y  L  D  Q  R  E  *  I  W  F  H  L  I  W  I  T  L  L  I  V  L  K  V  L  L  A  S  L  W  M  L  T  C  *  L  I  L  T  S  G  S  A  Q  T  R  M  M  N  L  K  L  K  T  N  G  L  L  N  F  V  V  P  V  L  Y  L  L  *  T  I  F  R :   H  R  E  V  E  A  N  *  F  R  K  *  K  R  T  S  Q  L  M  H  L  L  E  I  Q  V  T  G  R  K  F  V  W  A  I  L  W  V  C  Q  *  W  W  F  Q  Q  V  L  R  R  Y  P  M  H  R  L  M  I  L  A  G  R  Q  Q  *  L  L  A  F  M  L  L  L  T  T  I  M  L :   L  *  H  W  Q  W  R  I  S  H  *  P  T  I  T  S  S  A  L  Q  L  T  T  L  G  Q  M  I  Q  F  Q  T  H  P  L  P  L  Y  P  Q  D  N  Y  V  I  T  N  L  S  R  V  F  N  V  T  L  C  C  P  F  N  L  L  L  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25518" stop="25414"/>
                    <exon start="25309" stop="25085"/>
                    <exon start="24970" stop="24737"/>
                    <exon start="24525" stop="24385"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDPDDLSSRDIMLGDPFSVDITKLTVGYLEDADKEVVGVLRSKGVNMVPFNLDYTVDSAQGIVSFTMDVDMLAHFDEWQRSNQDDEFEAQDQWPLELRRARVISAVDYIQAQRSRSKLIQEVKENFTVDAFIGDSGDWEKVCVGNLVGMPVVVVPTGFKKISNASSDDTRRKTTITTGIYAPPDHDHVALALAMAYQSLTNHHKQRPPIDDIGPNDSIPNPPTSTVPARQLRDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27811" PGL_stop="26220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27811" e_stop="27785"/>
            <exon e_start="27686" e_stop="27572"/>
            <exon e_start="27381" e_stop="27157"/>
            <exon e_start="27068" e_stop="26986"/>
            <exon e_start="26891" e_stop="26791"/>
            <exon e_start="26622" e_stop="26499"/>
            <exon e_start="26337" e_stop="26220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.766" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.549" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.451" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.438" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27811" e_stop="27785" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.766" acc_prob="0.920">
            <gDNA_intron_boundary i_start="27784" i_stop="27687" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27686" e_stop="27572" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.549" acc_prob="0.769">
            <gDNA_intron_boundary i_start="27571" i_stop="27382" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27381" e_stop="27157" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.451" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27156" i_stop="27069" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27068" e_stop="26986" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.689">
            <gDNA_intron_boundary i_start="26985" i_stop="26892" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26891" e_stop="26791" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="26790" i_stop="26623" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26622" e_stop="26499" e_length="124"/>
          </exon>
          <intron i_serial="6" don_prob="0.438" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26498" i_stop="26338" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="26337" e_stop="26220" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27811" stop="27785"/>
              <exon start="27686" stop="27572"/>
              <exon start="27381" stop="27157"/>
              <exon start="27068" stop="26986"/>
              <exon start="26891" stop="26791"/>
              <exon start="26622" stop="26499"/>
              <exon start="26337" stop="26220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTATTCCCGGGACTTCACCTCAAG : TGGGAAATTAGGGCCTAAAAACTGTGGCGAACACTTGGAACAAGCCAAAAATGAGTTTCCGGTATGTAAATGTGGATTCGACATGTTGGATGCTGGCTTTTTCAATGACTGTAAG : AAGCTTGAAATACAGAAGGGCGCAAAAGATTTTAACATTCCTATAATAAGATCGAACCGGAAGTTAGTTGCTACTGAGAATGGAGGTTTGCGTGACCCGTCTCCTTTAGTTTTCAATTCTGCATGGAAATCCCAGGAAGCAAAGCGAGTAACGGACAAGTTCAATTATTCTGAATGCTCTGGCATTCAAAGGCCGAAAAATGATGAGGATATTGCTTTCATGAGT : GTTCTTGAACTCGGGCAACTTTTCAAGGAAAAATTGATTACATCCGAGGAACTCACTCGAATTTTTCTGAACAGATTAAAAAG : GTACGGCCCTGTCCTTGAATCTGTTATCACAATTACTGAAGAATTAGCATTTCAGCAAGCAAAAGAGGCTGATCAAGTGCTTGCAAAAGGAAAATATTTGG : GTCCTCTTCATGGGATCCCATATGGTCTAAAGGACATTATTGCAGTACCAGATTATCCCACAACATGGGGTTCCAAGTCTTTCAAAGATCAAGTTATTGATGTCGAAGCTTGGGTTTATAAGAG : GCTGAAATCTGCTGGTGCAATTCTTGTTGCAAAGTTGGTCTCTGGTTCTTTAGCTTATGACGATATCTGGTTCGGTGGTAGAACAAGAAACCCCTGGAATATCGAAGAATTTTCTACT</gDNA_template>
            <first_frame> G  L  F  P  G  L  H  L  K  :  W  E  I  R  A  *  K  L  W  R  T  L  G  T  S  Q  K  *  V  S  G  M  *  M  W  I  R  H  V  G  C  W  L  F  Q  *  L  *   : E  A  *  N  T  E  G  R  K  R  F  *  H  S  Y  N  K  I  E  P  E  V  S  C  Y  *  E  W  R  F  A  *  P  V  S  F  S  F  Q  F  C  M  E  I  P  G  S  K  A  S  N  G  Q  V  Q  L  F  *  M  L  W  H  S  K  A  E  K  *  *  G  Y  C  F  H  E   : C  S  *  T  R  A  T  F  Q  G  K  I  D  Y  I  R  G  T  H  S  N  F  S  E  Q  I  K  K  :  V  R  P  C  P  *  I  C  Y  H  N  Y  *  R  I  S  I  S  A  S  K  R  G  *  S  S  A  C  K  R  K  I  F  G :   S  S  S  W  D  P  I  W  S  K  G  H  Y  C  S  T  R  L  S  H  N  M  G  F  Q  V  F  Q  R  S  S  Y  *  C  R  S  L  G  L  *  E  :  A  E  I  C  W  C  N  S  C  C  K  V  G  L  W  F  F  S  L  *  R  Y  L  V  R  W  *  N  K  K  P  L  E  Y  R  R  I  F  Y  </first_frame>
            <second_frame>  V  Y  S  R  D  F  T  S  S :   G  K  L  G  P  K  N  C  G  E  H  L  E  Q  A  K  N  E  F  P  V  C  K  C  G  F  D  M  L  D  A  G  F  F  N  D  C  K  :  K  L  E  I  Q  K  G  A  K  D  F  N  I  P  I  I  R  S  N  R  K  L  V  A  T  E  N  G  G  L  R  D  P  S  P  L  V  F  N  S  A  W  K  S  Q  E  A  K  R  V  T  D  K  F  N  Y  S  E  C  S  G  I  Q  R  P  K  N  D  E  D  I  A  F  M  S  :  V  L  E  L  G  Q  L  F  K  E  K  L  I  T  S  E  E  L  T  R  I  F  L  N  R  L  K  R :   Y  G  P  V  L  E  S  V  I  T  I  T  E  E  L  A  F  Q  Q  A  K  E  A  D  Q  V  L  A  K  G  K  Y  L   : G  P  L  H  G  I  P  Y  G  L  K  D  I  I  A  V  P  D  Y  P  T  T  W  G  S  K  S  F  K  D  Q  V  I  D  V  E  A  W  V  Y  K  R :   L  K  S  A  G  A  I  L  V  A  K  L  V  S  G  S  L  A  Y  D  D  I  W  F  G  G  R  T  R  N  P  W  N  I  E  E  F  S  T </second_frame>
            <third_frame>   F  I  P  G  T  S  P  Q   : V  G  N  *  G  L  K  T  V  A  N  T  W  N  K  P  K  M  S  F  R  Y  V  N  V  D  S  T  C  W  M  L  A  F  S  M  T  V  R :   S  L  K  Y  R  R  A  Q  K  I  L  T  F  L  *  *  D  R  T  G  S  *  L  L  L  R  M  E  V  C  V  T  R  L  L  *  F  S  I  L  H  G  N  P  R  K  Q  S  E  *  R  T  S  S  I  I  L  N  A  L  A  F  K  G  R  K  M  M  R  I  L  L  S  *  V :   F  L  N  S  G  N  F  S  R  K  N  *  L  H  P  R  N  S  L  E  F  F  *  T  D  *  K   : G  T  A  L  S  L  N  L  L  S  Q  L  L  K  N  *  H  F  S  K  Q  K  R  L  I  K  C  L  Q  K  E  N  I  W  :  V  L  F  M  G  S  H  M  V  *  R  T  L  L  Q  Y  Q  I  I  P  Q  H  G  V  P  S  L  S  K  I  K  L  L  M  S  K  L  G  F  I  R   : G  *  N  L  L  V  Q  F  L  L  Q  S  W  S  L  V  L  *  L  M  T  I  S  G  S  V  V  E  Q  E  T  P  G  I  S  K  N  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27810" stop="27785"/>
                    <exon start="27686" stop="27572"/>
                    <exon start="27381" stop="27157"/>
                    <exon start="27068" stop="26986"/>
                    <exon start="26891" stop="26791"/>
                    <exon start="26622" stop="26499"/>
                    <exon start="26337" stop="26220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYSRDFTSSGKLGPKNCGEHLEQAKNEFPVCKCGFDMLDAGFFNDCKKLEIQKGAKDFNIPIIRSNRKLVATENGGLRDPSPLVFNSAWKSQEAKRVTDKFNYSECSGIQRPKNDEDIAFMSVLELGQLFKEKLITSEELTRIFLNRLKRYGPVLESVITITEELAFQQAKEADQVLAKGKYLGPLHGIPYGLKDIIAVPDYPTTWGSKSFKDQVIDVEAWVYKRLKSAGAILVAKLVSGSLAYDDIWFGGRTRNPWNIEEFST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33412" PGL_stop="29828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33412" e_stop="33055"/>
            <exon e_start="32954" e_stop="32839"/>
            <exon e_start="32446" e_stop="32344"/>
            <exon e_start="32238" e_stop="32180"/>
            <exon e_start="31200" e_stop="30686"/>
            <exon e_start="30226" e_stop="29828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.940" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33412" e_stop="33055" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33054" i_stop="32955" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32954" e_stop="32839" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32838" i_stop="32447" i_length="392"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32446" e_stop="32344" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="32343" i_stop="32239" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32238" e_stop="32180" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="32179" i_stop="31201" i_length="979"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31200" e_stop="30686" e_length="515"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30685" i_stop="30227" i_length="459"/>
          </intron>
          <exon e_serial="6" e_score="0.942">
            <gDNA_exon_boundary e_start="30226" e_stop="29828" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33412" stop="33055"/>
              <exon start="32954" stop="32839"/>
              <exon start="32446" stop="32344"/>
              <exon start="32238" stop="32180"/>
              <exon start="31200" stop="30835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30874" stop="30686"/>
              <exon start="30226" stop="29828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTAGAAGGAACAAAATTCGTTTACCAAGACCATTGAACAAGCTCACAGGTTTCAATGCCTTCTGGTACTCCCATCACCTCTTTGTCATTGTCTATTCTCTCCTCATAGTCCATGGTATCGAGCTTTACTTAACCAAAGAATGGTACAAGAAGACGGTCAGTCTATACATTTGTGGAATCAACAATAATTTCTTAATGAGTTTAACTTTTATACACTCACAACTATTAAATCAACTTACAATGCGAGCGTATACTGGCAGACATGGATGTACTTGGCTATACCAATCATACTTTATTCTGGTGAAAGATTACTAAGGGCATTCAGGTCAAGCGTCAAGGATGTTAAAATATTAAAA : GTGGCTATGTATCCTGGAAATGTGTTGACACTTCAAATGTCAAAGCCACAGGGCTTCAATTATAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCAGTTTCACCATTTGAATG : GCACCCATTTTCTATAACTTCAGCGCCTGGAGATGAGTATCTAAGTGTACATATTCGAACTGTTGGTGATTGGACTACAAAACTCAGAGATGTTTTCTCAGAG : CCATCACAAACAGGAAGAAGTGGACTCGTTAAAGCCGCCTACATGCAAGACAATATAAA : TTATTACCCAAAAGTGTTAATTGATGGACCATATGGAGCACCAGCACAAGACTATAAGGAATATGAGGTGCTTTTGTTGGTAGGTTTAGGAATTGGAGCCACCCCTATGATAAGTATTGTTAAAGACATAGTGAACAACATGAAGGAAGAAGAGTATGATCATGATTTGGAGAGCACAGAACAAAAGAAAAAATCAGGATCAGGATCAAACTTCAAGAGAGTATATTTTTATTGGGTTACTAGAGAACAAGGTTCATTTGATTGGTTCAAGGGTTTAATGAATGAGTTAGCTGAAATGGATTGTGCTGAAATAATCGAGATGCATAATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGATCTGCTCTCATCGCGATGCTTCAATCCATCAATCATGCTAAAAATGGTGTAGACATTGTATCTGGAACAAGAGTTAAGACTCATTTTGCTAGACCTAATTGGAGAGATGTCTACAAACGCATTGCTCTTAATCATACTGATGCAAGAGTTG : GAGTTTTCTACTGTGGGGCACCAGCACTGACGAAACAGCTTGGACAACTGGCCTTAGATTTTTCCCACAAGACATCAACAAAGTTTGATTTCCATAAAGAAAACTTTTGACCAATCATGGACTAGCAAAGGATCAAACCAAACAGATAACAACCATTTTTTTTTATAAAGAAGCATATATATCCACTACTTTCTTTTTTTTTTTTTTTATAGAAAATCTTGTTGATTTTGTTAATAGTTGGGTTTTGTATTGTTATACGAAAAGCAATTATTTTTGTGCAGCTCCACCCACCAGTACTGGATTGGATTACCAATTCAAATAATCCTTTTATTTTAATTTGTTCCTTTTGTAAAGGATATATCTATGTTGATTTATGTTAAACGATATTAAATGTCCACA</gDNA_template>
            <first_frame> D  L  E  G  T  K  F  V  Y  Q  D  H  *  T  S  S  Q  V  S  M  P  S  G  T  P  I  T  S  L  S  L  S  I  L  S  S  *  S  M  V  S  S  F  T  *  P  K  N  G  T  R  R  R  S  V  Y  T  F  V  E  S  T  I  I  S  *  *  V  *  L  L  Y  T  H  N  Y  *  I  N  L  Q  C  E  R  I  L  A  D  M  D  V  L  G  Y  T  N  H  T  L  F  W  *  K  I  T  K  G  I  Q  V  K  R  Q  G  C  *  N  I  K   : S  G  Y  V  S  W  K  C  V  D  T  S  N  V  K  A  T  G  L  Q  L  *  K  W  A  I  H  V  C  Q  L  C  C  S  F  T  I  *  M  :  A  P  I  F  Y  N  F  S  A  W  R  *  V  S  K  C  T  Y  S  N  C  W  *  L  D  Y  K  T  Q  R  C  F  L  R   : A  I  T  N  R  K  K  W  T  R  *  S  R  L  H  A  R  Q  Y  K  :  L  L  P  K  S  V  N  *  W  T  I  W  S  T  S  T  R  L  *  G  I  *  G  A  F  V  G  R  F  R  N  W  S  H  P  Y  D  K  Y  C  *  R  H  S  E  Q  H  E  G  R  R  V  *  S  *  F  G  E  H  R  T  K  E  K  I  R  I  R  I  K  L  Q  E  S  I  F  L  L  G  Y  *  R  T  R  F  I  *  L  V  Q  G  F  N  E  *  V  S  *  N  G  L  C  *  N  N  R  D  A  *  L  L  Y  K  C  L  *  R  R  *  C  S  I  C  S  H  R  D  A  S  I  H  Q  S  C  *  K  W  C  R  H  C  I  W  N  K  S  *  D  S  F  C  *  T  *  L  E  R  C  L  Q  T  H  C  S  *  S  Y  *  C  K  S  W :   S  F  L  L  W  G  T  S  T  D  E  T  A  W  T  T  G  L  R  F  F  P  Q  D  I  N  K  V  *  F  P  *  R  K  L  L  T  N  H  G  L  A  K  D  Q  T  K  Q  I  T  T  I  F  F  Y  K  E  A  Y  I  S  T  T  F  F  F  F  F  F  I  E  N  L  V  D  F  V  N  S  W  V  L  Y  C  Y  T  K  S  N  Y  F  C  A  A  P  P  T  S  T  G  L  D  Y  Q  F  K  *  S  F  Y  F  N  L  F  L  L  *  R  I  Y  L  C  *  F  M  L  N  D  I  K  C  P   </first_frame>
            <second_frame>  I  *  K  E  Q  N  S  F  T  K  T  I  E  Q  A  H  R  F  Q  C  L  L  V  L  P  S  P  L  C  H  C  L  F  S  P  H  S  P  W  Y  R  A  L  L  N  Q  R  M  V  Q  E  D  G  Q  S  I  H  L  W  N  Q  Q  *  F  L  N  E  F  N  F  Y  T  L  T  T  I  K  S  T  Y  N  A  S  V  Y  W  Q  T  W  M  Y  L  A  I  P  I  I  L  Y  S  G  E  R  L  L  R  A  F  R  S  S  V  K  D  V  K  I  L  K  :  V  A  M  Y  P  G  N  V  L  T  L  Q  M  S  K  P  Q  G  F  N  Y  K  S  G  Q  Y  M  F  V  N  C  A  A  V  S  P  F  E  W :   H  P  F  S  I  T  S  A  P  G  D  E  Y  L  S  V  H  I  R  T  V  G  D  W  T  T  K  L  R  D  V  F  S  E  :  P  S  Q  T  G  R  S  G  L  V  K  A  A  Y  M  Q  D  N  I  N :   Y  Y  P  K  V  L  I  D  G  P  Y  G  A  P  A  Q  D  Y  K  E  Y  E  V  L  L  L  V  G  L  G  I  G  A  T  P  M  I  S  I  V  K  D  I  V  N  N  M  K  E  E  E  Y  D  H  D  L  E  S  T  E  Q  K  K  K  S  G  S  G  S  N  F  K  R  V  Y  F  Y  W  V  T  R  E  Q  G  S  F  D  W  F  K  G  L  M  N  E  L  A  E  M  D  C  A  E  I  I  E  M  H  N  Y  C  T  S  V  Y  E  E  G  D  A  R  S  A  L  I  A  M  L  Q  S  I  N  H  A  K  N  G  V  D  I  V  S  G  T  R  V  K  T  H  F  A  R  P  N  W  R  D  V  Y  K  R  I  A  L  N  H  T  D  A  R  V   : G  V  F  Y  C  G  A  P  A  L  T  K  Q  L  G  Q  L  A  L  D  F  S  H  K  T  S  T  K  F  D  F  H  K  E  N  F  *  P  I  M  D  *  Q  R  I  K  P  N  R  *  Q  P  F  F  F  I  K  K  H  I  Y  P  L  L  S  F  F  F  F  L  *  K  I  L  L  I  L  L  I  V  G  F  C  I  V  I  R  K  A  I  I  F  V  Q  L  H  P  P  V  L  D  W  I  T  N  S  N  N  P  F  I  L  I  C  S  F  C  K  G  Y  I  Y  V  D  L  C  *  T  I  L  N  V  H  </second_frame>
            <third_frame>   F  R  R  N  K  I  R  L  P  R  P  L  N  K  L  T  G  F  N  A  F  W  Y  S  H  H  L  F  V  I  V  Y  S  L  L  I  V  H  G  I  E  L  Y  L  T  K  E  W  Y  K  K  T  V  S  L  Y  I  C  G  I  N  N  N  F  L  M  S  L  T  F  I  H  S  Q  L  L  N  Q  L  T  M  R  A  Y  T  G  R  H  G  C  T  W  L  Y  Q  S  Y  F  I  L  V  K  D  Y  *  G  H  S  G  Q  A  S  R  M  L  K  Y  *  K :   W  L  C  I  L  E  M  C  *  H  F  K  C  Q  S  H  R  A  S  I  I  K  V  G  N  T  C  L  S  T  V  L  Q  F  H  H  L  N   : G  T  H  F  L  *  L  Q  R  L  E  M  S  I  *  V  Y  I  F  E  L  L  V  I  G  L  Q  N  S  E  M  F  S  Q  S :   H  H  K  Q  E  E  V  D  S  L  K  P  P  T  C  K  T  I  *   : I  I  T  Q  K  C  *  L  M  D  H  M  E  H  Q  H  K  T  I  R  N  M  R  C  F  C  W  *  V  *  E  L  E  P  P  L  *  *  V  L  L  K  T  *  *  T  T  *  R  K  K  S  M  I  M  I  W  R  A  Q  N  K  R  K  N  Q  D  Q  D  Q  T  S  R  E  Y  I  F  I  G  L  L  E  N  K  V  H  L  I  G  S  R  V  *  *  M  S  *  L  K  W  I  V  L  K  *  S  R  C  I  I  I  V  Q  V  F  M  K  K  V  M  L  D  L  L  S  S  R  C  F  N  P  S  I  M  L  K  M  V  *  T  L  Y  L  E  Q  E  L  R  L  I  L  L  D  L  I  G  E  M  S  T  N  A  L  L  L  I  I  L  M  Q  E  L  :  E  F  S  T  V  G  H  Q  H  *  R  N  S  L  D  N  W  P  *  I  F  P  T  R  H  Q  Q  S  L  I  S  I  K  K  T  F  D  Q  S  W  T  S  K  G  S  N  Q  T  D  N  N  H  F  F  L  *  R  S  I  Y  I  H  Y  F  L  F  F  F  F  Y  R  K  S  C  *  F  C  *  *  L  G  F  V  L  L  Y  E  K  Q  L  F  L  C  S  S  T  H  Q  Y  W  I  G  L  P  I  Q  I  I  L  L  F  *  F  V  P  F  V  K  D  I  S  M  L  I  Y  V  K  R  Y  *  M  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33222" stop="33055"/>
                    <exon start="32954" stop="32839"/>
                    <exon start="32446" stop="32344"/>
                    <exon start="32238" stop="32180"/>
                    <exon start="31200" stop="30686"/>
                    <exon start="30226" stop="30117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNEFNFYTLTTIKSTYNASVYWQTWMYLAIPIILYSGERLLRAFRSSVKDVKILKVAMYPGNVLTLQMSKPQGFNYKSGQYMFVNCAAVSPFEWHPFSITSAPGDEYLSVHIRTVGDWTTKLRDVFSEPSQTGRSGLVKAAYMQDNINYYPKVLIDGPYGAPAQDYKEYEVLLLVGLGIGATPMISIVKDIVNNMKEEEYDHDLESTEQKKKSGSGSNFKRVYFYWVTREQGSFDWFKGLMNELAEMDCAEIIEMHNYCTSVYEEGDARSALIAMLQSINHAKNGVDIVSGTRVKTHFARPNWRDVYKRIALNHTDARVGVFYCGAPALTKQLGQLALDFSHKTSTKFDFHKENF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30129" stop="29905"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLLTNHGLAKDQTKQITTIFFYKEAYISTTFFFFFFIENLVDFVNSWVLYCYTKSNYFCAAPPTSTGLDYQFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41841" PGL_stop="44698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41841" e_stop="42196"/>
            <exon e_start="42666" e_stop="42720"/>
            <exon e_start="42827" e_stop="42952"/>
            <exon e_start="43035" e_stop="43129"/>
            <exon e_start="43318" e_stop="43402"/>
            <exon e_start="43504" e_stop="43563"/>
            <exon e_start="43840" e_stop="43895"/>
            <exon e_start="44015" e_stop="44120"/>
            <exon e_start="44245" e_stop="44313"/>
            <exon e_start="44412" e_stop="44698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.084" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="41841" e_stop="42196" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42197" i_stop="42665" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42666" e_stop="42720" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.978">
            <gDNA_intron_boundary i_start="42721" i_stop="42826" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42827" e_stop="42952" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="42953" i_stop="43034" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43035" e_stop="43129" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.729">
            <gDNA_intron_boundary i_start="43130" i_stop="43317" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43318" e_stop="43402" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43403" i_stop="43503" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43504" e_stop="43563" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.084" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43564" i_stop="43839" i_length="276"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43840" e_stop="43895" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="43896" i_stop="44014" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44015" e_stop="44120" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44121" i_stop="44244" i_length="124"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44245" e_stop="44313" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.947" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44314" i_stop="44411" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="0.965">
            <gDNA_exon_boundary e_start="44412" e_stop="44698" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41841" stop="42196"/>
              <exon start="42666" stop="42720"/>
              <exon start="42827" stop="42952"/>
              <exon start="43035" stop="43129"/>
              <exon start="43318" stop="43402"/>
              <exon start="43504" stop="43563"/>
              <exon start="43840" stop="43895"/>
              <exon start="44015" stop="44120"/>
              <exon start="44245" stop="44313"/>
              <exon start="44412" stop="44698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGTTGATATATAAATACTTATTATAAAGTCAATAATAAGTGGCTTCTCATTTTAATGGCGGATATTACTAGAACAAACAATCTGATTCATTTTCTAGCCCCTATAGCTTCATCTTCTTAAATATCTTTTGCTCTACTATATATCTTAAGATAAGAATAGGAATAAAGTTTCTACTTTTTATTGCATCTTCTTCTTTCTTGATATTATTGAACTGAAAATGGCTGTGGCTATGGTTTCTTGTGGAATCCCCACTAGTTTAAAACTTATAGAGAAGCAACCCGTTTCAATTCCAGGCTTCTTTAATGGGTCTTTAGCTTTGAATCCAGTCCAAAAACTGCACGTTACACCCAAGAG : ATTAGCTTTATCTGGGAGTACAATTGTTCTGAAAGCATCGGCTACAGCTGTGGAG : GATGGAAGTTCACAAGAGACTGCTGCAGTTCCAACACCCAAAGTTGTAATTGATTTGGATTCAGATCCAGAAGCAACGATTGTAGAGGTTACCTTTGGGGATCGCCTTGGGGCACTTCTCGACACG : ATGAATGCATTAAAAAACCTTGGGCTGAATGTTGTCAAGGCTAATGTCTGTCTTGATTCATCTGGGAAGCATAACACATTCGCCATCACAAAAGC : TTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCG : GAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAG : ATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG : TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG : GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG : GTTCTTGCGAATAGCCTGCGTTATTTCTTGAGGAGACCAACAACAGAGGATGCAAGTTTTTAATACAATGCTGAAAAGTGAGAAATTGTCAACAGGGTTAACCAAGTACTTTCAATTTTCAAGATAATGAAGCTTGCTGGTTTTAGCAGCACCGATCCATTCCAAGGTGTAAACAGCGAAAATATGCTTGAAACTCAGAATCATAGCTTCAATACTGCTGTAACAATGTAGATTGGTACCATTTATACATTAATGATATAAGTTTTCAGAACAGGAAAACAAAAACA</gDNA_template>
            <first_frame> V  V  D  I  *  I  L  I  I  K  S  I  I  S  G  F  S  F  *  W  R  I  L  L  E  Q  T  I  *  F  I  F  *  P  L  *  L  H  L  L  K  Y  L  L  L  Y  Y  I  S  *  D  K  N  R  N  K  V  S  T  F  Y  C  I  F  F  F  L  D  I  I  E  L  K  M  A  V  A  M  V  S  C  G  I  P  T  S  L  K  L  I  E  K  Q  P  V  S  I  P  G  F  F  N  G  S  L  A  L  N  P  V  Q  K  L  H  V  T  P  K  R :   L  A  L  S  G  S  T  I  V  L  K  A  S  A  T  A  V  E  :  D  G  S  S  Q  E  T  A  A  V  P  T  P  K  V  V  I  D  L  D  S  D  P  E  A  T  I  V  E  V  T  F  G  D  R  L  G  A  L  L  D  T  :  M  N  A  L  K  N  L  G  L  N  V  V  K  A  N  V  C  L  D  S  S  G  K  H  N  T  F  A  I  T  K  A :   S  T  G  R  K  V  D  D  P  E  L  L  E  A  I  R  L  T  I  I  N  N  M  M  E  Y  H  P  :  E  S  S  S  R  L  A  M  G  E  A  F  G  V  F  Q  P  Y  Q  K  :  I  D  V  D  I  A  T  H  I  H  V  Y  D  D  A  P  E  R  S :   L  L  C  V  E  T  A  D  R  P  G  L  I  V  D  L  V  K  T  I  T  D  I  N  V  D  V  E  S  G  E  F  D  T  E  :  G  L  L  A  K  A  K  F  H  V  N  Y  K  G  K  A  L  I  K  P  L  Q  Q  :  V  L  A  N  S  L  R  Y  F  L  R  R  P  T  T  E  D  A  S  F  *  Y  N  A  E  K  *  E  I  V  N  R  V  N  Q  V  L  S  I  F  K  I  M  K  L  A  G  F  S  S  T  D  P  F  Q  G  V  N  S  E  N  M  L  E  T  Q  N  H  S  F  N  T  A  V  T  M  *  I  G  T  I  Y  T  L  M  I  *  V  F  R  T  G  K  Q  K   </first_frame>
            <second_frame>  L  L  I  Y  K  Y  L  L  *  S  Q  *  *  V  A  S  H  F  N  G  G  Y  Y  *  N  K  Q  S  D  S  F  S  S  P  Y  S  F  I  F  L  N  I  F  C  S  T  I  Y  L  K  I  R  I  G  I  K  F  L  L  F  I  A  S  S  S  F  L  I  L  L  N  *  K  W  L  W  L  W  F  L  V  E  S  P  L  V  *  N  L  *  R  S  N  P  F  Q  F  Q  A  S  L  M  G  L  *  L  *  I  Q  S  K  N  C  T  L  H  P  R   : D  *  L  Y  L  G  V  Q  L  F  *  K  H  R  L  Q  L  W  R :   M  E  V  H  K  R  L  L  Q  F  Q  H  P  K  L  *  L  I  W  I  Q  I  Q  K  Q  R  L  *  R  L  P  L  G  I  A  L  G  H  F  S  T  R :   *  M  H  *  K  T  L  G  *  M  L  S  R  L  M  S  V  L  I  H  L  G  S  I  T  H  S  P  S  Q  K   : L  L  R  V  G  R  S  M  I  Q  S  C  L  K  Q  F  V  *  R  S  S  I  I  *  W  N  T  T  R :   N  L  A  P  D  *  L  W  E  K  L  S  V  F  F  N  H  I  R  R :   L  T  W  T  *  R  P  I  S  M  F  M  T  M  L  L  K  E   : V  Y  S  V  *  R  Q  Q  T  D  L  D  *  *  L  I  L  S  R  P  L  L  T  *  M  L  M  L  N  Q  E  S  S  I  L  R :   V  C  L  L  R  R  N  F  M  S  T  T  R  A  K  R  *  S  S  P  F  N  R :   F  L  R  I  A  C  V  I  S  *  G  D  Q  Q  Q  R  M  Q  V  F  N  T  M  L  K  S  E  K  L  S  T  G  L  T  K  Y  F  Q  F  S  R  *  *  S  L  L  V  L  A  A  P  I  H  S  K  V  *  T  A  K  I  C  L  K  L  R  I  I  A  S  I  L  L  *  Q  C  R  L  V  P  F  I  H  *  *  Y  K  F  S  E  Q  E  N  K  N  </second_frame>
            <third_frame>   C  *  Y  I  N  T  Y  Y  K  V  N  N  K  W  L  L  I  L  M  A  D  I  T  R  T  N  N  L  I  H  F  L  A  P  I  A  S  S  S  *  I  S  F  A  L  L  Y  I  L  R  *  E  *  E  *  S  F  Y  F  L  L  H  L  L  L  S  *  Y  Y  *  T  E  N  G  C  G  Y  G  F  L  W  N  P  H  *  F  K  T  Y  R  E  A  T  R  F  N  S  R  L  L  *  W  V  F  S  F  E  S  S  P  K  T  A  R  Y  T  Q  E  :  I  S  F  I  W  E  Y  N  C  S  E  S  I  G  Y  S  C  G   : G  W  K  F  T  R  D  C  C  S  S  N  T  Q  S  C  N  *  F  G  F  R  S  R  S  N  D  C  R  G  Y  L  W  G  S  P  W  G  T  S  R  H   : D  E  C  I  K  K  P  W  A  E  C  C  Q  G  *  C  L  S  *  F  I  W  E  A  *  H  I  R  H  H  K  S  :  F  Y  G  *  E  G  R  *  S  R  A  A  *  S  N  S  F  D  D  H  Q  *  Y  D  G  I  P  P   : G  I  *  L  Q  I  S  Y  G  R  S  F  R  C  F  S  T  I  S  E   : D  *  R  G  H  S  D  P  Y  P  C  L  *  R  C  S  *  K  K  :  F  T  L  C  R  D  S  R  Q  T  W  T  D  S  *  S  C  Q  D  H  Y  *  H  K  C  *  C  *  I  R  R  V  R  Y  *   : G  F  A  C  *  G  E  I  S  C  Q  L  Q  G  Q  S  V  D  Q  A  P  S  T   : G  S  C  E  *  P  A  L  F  L  E  E  T  N  N  R  G  C  K  F  L  I  Q  C  *  K  V  R  N  C  Q  Q  G  *  P  S  T  F  N  F  Q  D  N  E  A  C  W  F  *  Q  H  R  S  I  P  R  C  K  Q  R  K  Y  A  *  N  S  E  S  *  L  Q  Y  C  C  N  N  V  D  W  Y  H  L  Y  I  N  D  I  S  F  Q  N  R  K  T  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41991" stop="42196"/>
                    <exon start="42666" stop="42720"/>
                    <exon start="42827" stop="42952"/>
                    <exon start="43035" stop="43129"/>
                    <exon start="43318" stop="43402"/>
                    <exon start="43504" stop="43563"/>
                    <exon start="43840" stop="43895"/>
                    <exon start="44015" stop="44120"/>
                    <exon start="44245" stop="44313"/>
                    <exon start="44412" stop="44474"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKNRNKVSTFYCIFFFLDIIELKMAVAMVSCGIPTSLKLIEKQPVSIPGFFNGSLALNPVQKLHVTPKRLALSGSTIVLKASATAVEDGSSQETAAVPTPKVVIDLDSDPEATIVEVTFGDRLGALLDTMNALKNLGLNVVKANVCLDSSGKHNTFAITKASTGRKVDDPELLEAIRLTIINNMMEYHPESSSRLAMGEAFGVFQPYQKIDVDIATHIHVYDDAPERSLLCVETADRPGLIVDLVKTITDINVDVESGEFDTEGLLAKAKFHVNYKGKALIKPLQQVLANSLRYFLRRPTTEDASF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43308" e_stop="43895"/>
            <exon e_start="44015" e_stop="44120"/>
            <exon e_start="44245" e_stop="44313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43308" e_stop="43895" e_length="588"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="43896" i_stop="44014" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44015" e_stop="44120" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44121" i_stop="44244" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44245" e_stop="44313" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43308" stop="43895"/>
              <exon start="44015" stop="44120"/>
              <exon start="44245" stop="44313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTCTAGTTCTACGGGTAGGAAGGTCGATGATCCAGAGCTGCTTGAAGCAATTCGTTTGACGATCATCAATAATATGATGGAATACCACCCGGTAGAACTTCAATAAGTTATTGAGCATCAGTTGCTTGATCTGGTACCTCCTGAGGGATTCTTATATAGCTGCTTCTTCTTACTGCATAATTTCTGATGCAGGAATCTAGCTCCAGATTAGCTATGGGAGAAGCTTTCGGTGTTTTTCAACCATATCAGAAGGTTGTTAATAGCCTATATATGCTGTCCTCGCCTCCAGTGTGTGTATACACCGTTAAGTAGATTATGCACATCTGTATTGGTTATTTTGAACATGTGGGAGTGGGGGGTTGTTTTCTGAATGTGCGAGGTTCCTGCTAGTCCTTGCATCATAGTAACGACTAATAGCTTTCTTTCTAGTACAAATTTGATACAGAAACTAAGGCTTGATGTACATAAACTTTCATATCAATCATTTAACTTAAATCTTACTTTGTTGTTTATGCTGAAAATTTTCAGATTGACGTGGACATAGCGACCCATATCCATGTTTATGACGATGCTCCTGAAAGAAG : TTTACTCTGTGTAGAGACAGCAGACAGACCTGGACTGATAGTTGATCTTGTCAAGACCATTACTGACATAAATGTTGATGTTGAATCAGGAGAGTTCGATACTGAG : GGTTTGCTTGCTAAGGCGAAATTTCATGTCAACTACAAGGGCAAAGCGTTGATCAAGCCCCTTCAACAG</gDNA_template>
            <first_frame> L  F  L  V  L  R  V  G  R  S  M  I  Q  S  C  L  K  Q  F  V  *  R  S  S  I  I  *  W  N  T  T  R  *  N  F  N  K  L  L  S  I  S  C  L  I  W  Y  L  L  R  D  S  Y  I  A  A  S  S  Y  C  I  I  S  D  A  G  I  *  L  Q  I  S  Y  G  R  S  F  R  C  F  S  T  I  S  E  G  C  *  *  P  I  Y  A  V  L  A  S  S  V  C  I  H  R  *  V  D  Y  A  H  L  Y  W  L  F  *  T  C  G  S  G  G  L  F  S  E  C  A  R  F  L  L  V  L  A  S  *  *  R  L  I  A  F  F  L  V  Q  I  *  Y  R  N  *  G  L  M  Y  I  N  F  H  I  N  H  L  T  *  I  L  L  C  C  L  C  *  K  F  S  D  *  R  G  H  S  D  P  Y  P  C  L  *  R  C  S  *  K  K  :  F  T  L  C  R  D  S  R  Q  T  W  T  D  S  *  S  C  Q  D  H  Y  *  H  K  C  *  C  *  I  R  R  V  R  Y  *   : G  F  A  C  *  G  E  I  S  C  Q  L  Q  G  Q  S  V  D  Q  A  P  S  T  </first_frame>
            <second_frame>  C  F  *  F  Y  G  *  E  G  R  *  S  R  A  A  *  S  N  S  F  D  D  H  Q  *  Y  D  G  I  P  P  G  R  T  S  I  S  Y  *  A  S  V  A  *  S  G  T  S  *  G  I  L  I  *  L  L  L  L  T  A  *  F  L  M  Q  E  S  S  S  R  L  A  M  G  E  A  F  G  V  F  Q  P  Y  Q  K  V  V  N  S  L  Y  M  L  S  S  P  P  V  C  V  Y  T  V  K  *  I  M  H  I  C  I  G  Y  F  E  H  V  G  V  G  G  C  F  L  N  V  R  G  S  C  *  S  L  H  H  S  N  D  *  *  L  S  F  *  Y  K  F  D  T  E  T  K  A  *  C  T  *  T  F  I  S  I  I  *  L  K  S  Y  F  V  V  Y  A  E  N  F  Q  I  D  V  D  I  A  T  H  I  H  V  Y  D  D  A  P  E  R  S :   L  L  C  V  E  T  A  D  R  P  G  L  I  V  D  L  V  K  T  I  T  D  I  N  V  D  V  E  S  G  E  F  D  T  E  :  G  L  L  A  K  A  K  F  H  V  N  Y  K  G  K  A  L  I  K  P  L  Q  Q </second_frame>
            <third_frame>   V  S  S  S  T  G  R  K  V  D  D  P  E  L  L  E  A  I  R  L  T  I  I  N  N  M  M  E  Y  H  P  V  E  L  Q  *  V  I  E  H  Q  L  L  D  L  V  P  P  E  G  F  L  Y  S  C  F  F  L  L  H  N  F  *  C  R  N  L  A  P  D  *  L  W  E  K  L  S  V  F  F  N  H  I  R  R  L  L  I  A  Y  I  C  C  P  R  L  Q  C  V  Y  T  P  L  S  R  L  C  T  S  V  L  V  I  L  N  M  W  E  W  G  V  V  F  *  M  C  E  V  P  A  S  P  C  I  I  V  T  T  N  S  F  L  S  S  T  N  L  I  Q  K  L  R  L  D  V  H  K  L  S  Y  Q  S  F  N  L  N  L  T  L  L  F  M  L  K  I  F  R  L  T  W  T  *  R  P  I  S  M  F  M  T  M  L  L  K  E   : V  Y  S  V  *  R  Q  Q  T  D  L  D  *  *  L  I  L  S  R  P  L  L  T  *  M  L  M  L  N  Q  E  S  S  I  L  R :   V  C  L  L  R  R  N  F  M  S  T  T  R  A  K  R  *  S  S  P  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43801" stop="43895"/>
                    <exon start="44015" stop="44120"/>
                    <exon start="44245" stop="44313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSYFVVYAENFQIDVDIATHIHVYDDAPERSLLCVETADRPGLIVDLVKTITDINVDVESGEFDTEGLLAKAKFHVNYKGKALIKPLQQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54710" PGL_stop="58593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54710" e_stop="55006"/>
            <exon e_start="55543" e_stop="55791"/>
            <exon e_start="55878" e_stop="56051"/>
            <exon e_start="56189" e_stop="56295"/>
            <exon e_start="57978" e_stop="58593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.036" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54710" e_stop="55006" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.036">
            <gDNA_intron_boundary i_start="55007" i_stop="55542" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55543" e_stop="55791" e_length="249"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.917">
            <gDNA_intron_boundary i_start="55792" i_stop="55877" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55878" e_stop="56051" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.979">
            <gDNA_intron_boundary i_start="56052" i_stop="56188" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56189" e_stop="56295" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56296" i_stop="57977" i_length="1682"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57978" e_stop="58593" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54710" stop="55006"/>
              <exon start="55543" stop="55791"/>
              <exon start="55878" stop="56051"/>
              <exon start="56189" stop="56295"/>
              <exon start="57978" stop="58593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAACACAAATTGCTTTCTCTTTCATCTCATAAGCGTGACTTTCACTGGAATTTTCCAACTCTACTCAGCACGGCTCTGATATTTTTGGTATTTGTCTTACTCACTCAATCTGAAACTCTTTTTTGTCGTTTTCTCATGCATCCCTCGAGGAATTACACCGGCGAAGCGCCGTCGGAGTTGCGGTGGCAGAGGGGGAAAATGTTGCCGGTGAAGAGGGAGGTAGACCTTGAAAACTTTTCCGATGAAGAACGCTGCAAACTCGACAAGCGATTCAAGCTTTCCTCTTCTCTGCAA : CAGCAACTGGGTGAAGGAGCTTGTAATTTTACTGTTTCATCATCGTTCATGTCGGTAGATGAACCCAGTCCATTAGGTTTGCGGCTAAGAAAGACCCCATCACTGTTGGATATGTTCCAAACGATGCTTGGGGGCACCTCCATGGTGGAAAGTCTTGGAAAGAAGGAGCAGAAAAGAAGCACTGCAATGATAGAAAAGCTCAAGGCCTCGAATTTTCCTGGTTCAGTTCTGAGAATTGGAACCTGGGAG : TATAAGTCGAGATATGAAGGAGATTTGGTTGCAAAATGTTACTTTGCCAAGCATAAACTTGTATGGGAAGTCCTTGATGGTGGTCTCAAGAATAAGATAGAGATCCAGTGGTCTGATATTATAGGGTTGAAGGCAAATTACCCAGATGATGCACCAGGAACCTTGGATATAGTG : CTGGCAAGGCAACCTCTTTTCTTTAGGGAGACAGATCCACAACCCAGAAAGCACACACTTTGGCAAGCTACTTCAGATTTTACTGACGGACAGGCTAGTATACACAG : GCGACATTACTTAGAGTGTCCGCATGGATTGTTGGGAAAGCATATTGAAAAGCTTGTGCAATGTGATCCTCGTCTCAACTTTCTGAGTCAACAAGCAGAGATGACTCTAGATTCTCCTTATTTTGAATCCCAGATGTCAGGTTTTGAAGACACACATGAAAGGGACCGTGAATTTGATCTGAATAATGAAGGGAGTCCGAATTTTATTGACTATACTTCACCTTCTGGAGCTCAGTGTTCCTCCAAAAGTAAGCAAGATCCTAGACCTTTGGAATGTATTCACCAAGAAAAGCCATCCCCAAGATCAGGTAATTATGTATTTTATCTGAGAAGTGCATTTAAGTTTTCTTGAATTGAGTTGTATGGTGAGTATGTCTTTGAAGATGTCGATGATCATCCCTTATCCCCCACCTTTTTGAAAAAAAGACAAATTGATCGTCATTTTCTTTTCAAAGAGTGGAGAGGAAGTTCGCTACCCATTCCCTTGATTTTATTGTAGTCATGTCTTGGTGTTACAGTTGTGTGTTTCTTGAACATGATCCACATTGAGGGGGTTGTCTCTGTTCAAAAAGAGGAATATGACCGTAATGCAGAATTGGGTTATGGACATGTTATC</gDNA_template>
            <first_frame> P  K  H  K  L  L  S  L  S  S  H  K  R  D  F  H  W  N  F  P  T  L  L  S  T  A  L  I  F  L  V  F  V  L  L  T  Q  S  E  T  L  F  C  R  F  L  M  H  P  S  R  N  Y  T  G  E  A  P  S  E  L  R  W  Q  R  G  K  M  L  P  V  K  R  E  V  D  L  E  N  F  S  D  E  E  R  C  K  L  D  K  R  F  K  L  S  S  S  L  Q  :  Q  Q  L  G  E  G  A  C  N  F  T  V  S  S  S  F  M  S  V  D  E  P  S  P  L  G  L  R  L  R  K  T  P  S  L  L  D  M  F  Q  T  M  L  G  G  T  S  M  V  E  S  L  G  K  K  E  Q  K  R  S  T  A  M  I  E  K  L  K  A  S  N  F  P  G  S  V  L  R  I  G  T  W  E  :  Y  K  S  R  Y  E  G  D  L  V  A  K  C  Y  F  A  K  H  K  L  V  W  E  V  L  D  G  G  L  K  N  K  I  E  I  Q  W  S  D  I  I  G  L  K  A  N  Y  P  D  D  A  P  G  T  L  D  I  V  :  L  A  R  Q  P  L  F  F  R  E  T  D  P  Q  P  R  K  H  T  L  W  Q  A  T  S  D  F  T  D  G  Q  A  S  I  H  R :   R  H  Y  L  E  C  P  H  G  L  L  G  K  H  I  E  K  L  V  Q  C  D  P  R  L  N  F  L  S  Q  Q  A  E  M  T  L  D  S  P  Y  F  E  S  Q  M  S  G  F  E  D  T  H  E  R  D  R  E  F  D  L  N  N  E  G  S  P  N  F  I  D  Y  T  S  P  S  G  A  Q  C  S  S  K  S  K  Q  D  P  R  P  L  E  C  I  H  Q  E  K  P  S  P  R  S  G  N  Y  V  F  Y  L  R  S  A  F  K  F  S  *  I  E  L  Y  G  E  Y  V  F  E  D  V  D  D  H  P  L  S  P  T  F  L  K  K  R  Q  I  D  R  H  F  L  F  K  E  W  R  G  S  S  L  P  I  P  L  I  L  L  *  S  C  L  G  V  T  V  V  C  F  L  N  M  I  H  I  E  G  V  V  S  V  Q  K  E  E  Y  D  R  N  A  E  L  G  Y  G  H  V  I </first_frame>
            <second_frame>  Q  N  T  N  C  F  L  F  H  L  I  S  V  T  F  T  G  I  F  Q  L  Y  S  A  R  L  *  Y  F  W  Y  L  S  Y  S  L  N  L  K  L  F  F  V  V  F  S  C  I  P  R  G  I  T  P  A  K  R  R  R  S  C  G  G  R  G  G  K  C  C  R  *  R  G  R  *  T  L  K  T  F  P  M  K  N  A  A  N  S  T  S  D  S  S  F  P  L  L  C  N :   S  N  W  V  K  E  L  V  I  L  L  F  H  H  R  S  C  R  *  M  N  P  V  H  *  V  C  G  *  E  R  P  H  H  C  W  I  C  S  K  R  C  L  G  A  P  P  W  W  K  V  L  E  R  R  S  R  K  E  A  L  Q  *  *  K  S  S  R  P  R  I  F  L  V  Q  F  *  E  L  E  P  G  S :   I  S  R  D  M  K  E  I  W  L  Q  N  V  T  L  P  S  I  N  L  Y  G  K  S  L  M  V  V  S  R  I  R  *  R  S  S  G  L  I  L  *  G  *  R  Q  I  T  Q  M  M  H  Q  E  P  W  I  *  C :   W  Q  G  N  L  F  S  L  G  R  Q  I  H  N  P  E  S  T  H  F  G  K  L  L  Q  I  L  L  T  D  R  L  V  Y  T   : G  D  I  T  *  S  V  R  M  D  C  W  E  S  I  L  K  S  L  C  N  V  I  L  V  S  T  F  *  V  N  K  Q  R  *  L  *  I  L  L  I  L  N  P  R  C  Q  V  L  K  T  H  M  K  G  T  V  N  L  I  *  I  M  K  G  V  R  I  L  L  T  I  L  H  L  L  E  L  S  V  P  P  K  V  S  K  I  L  D  L  W  N  V  F  T  K  K  S  H  P  Q  D  Q  V  I  M  Y  F  I  *  E  V  H  L  S  F  L  E  L  S  C  M  V  S  M  S  L  K  M  S  M  I  I  P  Y  P  P  P  F  *  K  K  D  K  L  I  V  I  F  F  S  K  S  G  E  E  V  R  Y  P  F  P  *  F  Y  C  S  H  V  L  V  L  Q  L  C  V  S  *  T  *  S  T  L  R  G  L  S  L  F  K  K  R  N  M  T  V  M  Q  N  W  V  M  D  M  L   </second_frame>
            <third_frame>   K  T  Q  I  A  F  S  F  I  S  *  A  *  L  S  L  E  F  S  N  S  T  Q  H  G  S  D  I  F  G  I  C  L  T  H  S  I  *  N  S  F  L  S  F  S  H  A  S  L  E  E  L  H  R  R  S  A  V  G  V  A  V  A  E  G  E  N  V  A  G  E  E  G  G  R  P  *  K  L  F  R  *  R  T  L  Q  T  R  Q  A  I  Q  A  F  L  F  S  A   : T  A  T  G  *  R  S  L  *  F  Y  C  F  I  I  V  H  V  G  R  *  T  Q  S  I  R  F  A  A  K  K  D  P  I  T  V  G  Y  V  P  N  D  A  W  G  H  L  H  G  G  K  S  W  K  E  G  A  E  K  K  H  C  N  D  R  K  A  Q  G  L  E  F  S  W  F  S  S  E  N  W  N  L  G   : V  *  V  E  I  *  R  R  F  G  C  K  M  L  L  C  Q  A  *  T  C  M  G  S  P  *  W  W  S  Q  E  *  D  R  D  P  V  V  *  Y  Y  R  V  E  G  K  L  P  R  *  C  T  R  N  L  G  Y  S   : A  G  K  A  T  S  F  L  *  G  D  R  S  T  T  Q  K  A  H  T  L  A  S  Y  F  R  F  Y  *  R  T  G  *  Y  T  Q  :  A  T  L  L  R  V  S  A  W  I  V  G  K  A  Y  *  K  A  C  A  M  *  S  S  S  Q  L  S  E  S  T  S  R  D  D  S  R  F  S  L  F  *  I  P  D  V  R  F  *  R  H  T  *  K  G  P  *  I  *  S  E  *  *  R  E  S  E  F  Y  *  L  Y  F  T  F  W  S  S  V  F  L  Q  K  *  A  R  S  *  T  F  G  M  Y  S  P  R  K  A  I  P  K  I  R  *  L  C  I  L  S  E  K  C  I  *  V  F  L  N  *  V  V  W  *  V  C  L  *  R  C  R  *  S  S  L  I  P  H  L  F  E  K  K  T  N  *  S  S  F  S  F  Q  R  V  E  R  K  F  A  T  H  S  L  D  F  I  V  V  M  S  W  C  Y  S  C  V  F  L  E  H  D  P  H  *  G  G  C  L  C  S  K  R  G  I  *  P  *  C  R  I  G  L  W  T  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54710" stop="55006"/>
                    <exon start="55543" stop="55791"/>
                    <exon start="55878" stop="56051"/>
                    <exon start="56189" stop="56295"/>
                    <exon start="57978" stop="58329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKHKLLSLSSHKRDFHWNFPTLLSTALIFLVFVLLTQSETLFCRFLMHPSRNYTGEAPSELRWQRGKMLPVKREVDLENFSDEERCKLDKRFKLSSSLQQQLGEGACNFTVSSSFMSVDEPSPLGLRLRKTPSLLDMFQTMLGGTSMVESLGKKEQKRSTAMIEKLKASNFPGSVLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIIGLKANYPDDAPGTLDIVLARQPLFFRETDPQPRKHTLWQATSDFTDGQASIHRRHYLECPHGLLGKHIEKLVQCDPRLNFLSQQAEMTLDSPYFESQMSGFEDTHERDREFDLNNEGSPNFIDYTSPSGAQCSSKSKQDPRPLECIHQEKPSPRSGNYVFYLRSAFKFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59066" PGL_stop="59485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59066" e_stop="59485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="59066" e_stop="59485" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59066" stop="59485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATCCTGCAACAGTTCAAGCGAGTGAGAACTGTGGTGATGTGTCGGATGAAAGAAGAGTTAATGAAATAAATTTCATTCCCACCGCACCGCTTGGAAGAAAAGATGAAGAAGATTCTTCTATGCCAGAGGATGAATCAGCTGATCTCTCTAGTTGCAAGCCGACTTCAACAATGTCAAGGAAGGACTCTGTTGGTGATCTGTTGCTGAATCTTCCTAGGATAGCATCACTGCCCCACTTTTTGTTCTTATGCGATGATTCTACAGGTAACCAGGCTAGATAGTCTTAGCTCAAGTCTACATCAGGTAACCATCGCAAAGGATGGCTGTAGTTCTCTTGTATATATTGAAAAGCTATGTTAGCAACAGTACTGTCCAGTTTAGGACTTGAAACTTTGATGCATCATTATAGAACTGTTC</gDNA_template>
            <first_frame> R  I  L  Q  Q  F  K  R  V  R  T  V  V  M  C  R  M  K  E  E  L  M  K  *  I  S  F  P  P  H  R  L  E  E  K  M  K  K  I  L  L  C  Q  R  M  N  Q  L  I  S  L  V  A  S  R  L  Q  Q  C  Q  G  R  T  L  L  V  I  C  C  *  I  F  L  G  *  H  H  C  P  T  F  C  S  Y  A  M  I  L  Q  V  T  R  L  D  S  L  S  S  S  L  H  Q  V  T  I  A  K  D  G  C  S  S  L  V  Y  I  E  K  L  C  *  Q  Q  Y  C  P  V  *  D  L  K  L  *  C  I  I  I  E  L  F </first_frame>
            <second_frame>  G  S  C  N  S  S  S  E  *  E  L  W  *  C  V  G  *  K  K  S  *  *  N  K  F  H  S  H  R  T  A  W  K  K  R  *  R  R  F  F  Y  A  R  G  *  I  S  *  S  L  *  L  Q  A  D  F  N  N  V  K  E  G  L  C  W  *  S  V  A  E  S  S  *  D  S  I  T  A  P  L  F  V  L  M  R  *  F  Y  R  *  P  G  *  I  V  L  A  Q  V  Y  I  R  *  P  S  Q  R  M  A  V  V  L  L  Y  I  L  K  S  Y  V  S  N  S  T  V  Q  F  R  T  *  N  F  D  A  S  L  *  N  C   </second_frame>
            <third_frame>   D  P  A  T  V  Q  A  S  E  N  C  G  D  V  S  D  E  R  R  V  N  E  I  N  F  I  P  T  A  P  L  G  R  K  D  E  E  D  S  S  M  P  E  D  E  S  A  D  L  S  S  C  K  P  T  S  T  M  S  R  K  D  S  V  G  D  L  L  L  N  L  P  R  I  A  S  L  P  H  F  L  F  L  C  D  D  S  T  G  N  Q  A  R  *  S  *  L  K  S  T  S  G  N  H  R  K  G  W  L  *  F  S  C  I  Y  *  K  A  M  L  A  T  V  L  S  S  L  G  L  E  T  L  M  H  H  Y  R  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59068" stop="59349"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPATVQASENCGDVSDERRVNEINFIPTAPLGRKDEEDSSMPEDESADLSSCKPTSTMSRKDSVGDLLLNLPRIASLPHFLFLCDDSTGNQAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="68971" PGL_stop="72969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68971" e_stop="69626"/>
            <exon e_start="70078" e_stop="70545"/>
            <exon e_start="71341" e_stop="71539"/>
            <exon e_start="71951" e_stop="72164"/>
            <exon e_start="72260" e_stop="72362"/>
            <exon e_start="72638" e_stop="72969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68971" e_stop="69626" e_length="656"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69627" i_stop="70077" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70078" e_stop="70545" e_length="468"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70546" i_stop="71340" i_length="795"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71341" e_stop="71539" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71540" i_stop="71950" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71951" e_stop="72164" e_length="214"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72165" i_stop="72259" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72260" e_stop="72362" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="72363" i_stop="72637" i_length="275"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="72638" e_stop="72969" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68971" stop="69626"/>
              <exon start="70078" stop="70364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69209" stop="69626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70351" stop="70545"/>
              <exon start="71341" stop="71539"/>
              <exon start="71951" stop="72164"/>
              <exon start="72260" stop="72362"/>
              <exon start="72638" stop="72969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTCTTCAACACTTTTTCTTTATTGCTCTTAGCGAGCCCAAAATTTCAAACTATAGTACTACATTTTTTTTTTATTCTTCTTCTCGTCAAGTCTCAAAAGCTAAATCAAAATGACAAATGCAACGATGGAGAACGAAACAAAACAAGACGATATAATTTTTCGATCGAAGCTCCCTGATATTTACATCCCTAATCATCTTCCGTTACACTCGTATTGTTTCGAAAATATTTCGGAATTCAAATCGCGCCCGTGTTTAATCGACGGGGCGAATAATCAAATTTATACATACGCTGATGTTGAGCTCAATTCGAGAAAAGTTGCTGCTGGTCTTCATAAACAATTTGGGATCCAACAAAAGGATACTATTATGATCTTATTGCCAAATTCACCAGAATTTGTGTATGTCTTCCTTGGTGCGTCGTACCTCGGCGCGATATCGACGATGGCTAATCCTTTGTTTACGTCTGCTGAAGTTGTGAAGCAAGCTAAGGCTTCTAATGCTAAGATCATTGTCACTCAATCGTGTCATGTGAACAAGGTGAAGGATTATGCATTGGAGAATGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCCGATGAGCATGATATCCCTGAG : GTGAAAATCCAACCCGATGATGTGGTGGCGTTGCCGTATTCCTCCGGAACAACGGGTTTACCTAAAGGTGTCATGTTGACACACAAGGGACTAGTCACAAGTGTGGCACAACAAGTTGATGGTGAAAATCCAAACTTGTACATCCATAGTGAGGATGTATTGCTTTGTGTGTTGCCTTTGTTTCATATATATTCCCTCAATTCCGTTTTGCTATGTGGATTAAGAGTTGGAGCAGCAATTTTGATTATGCAAAAATTTGACATTGTTCCATTCTTGGAATTAATACAAAATTACAAGGTGACCATAGGGCCATTTGTGCCACCTATTGTTTTGGCTATTGCTAAGAGTCCTATGGTTGATAATTATGATTTATCATCGGTAAGAACCGTTATGTCTGGGGCTGCACCATTAGGAAAAGAACTTGAAGACACTGTTCGAGCCAAATTTCCTAATGCTAAACTTGGTCAA : GGTTACGGAATGACAGAAGCCGGACCAGTGTTGGCTATGTGCTTGGCATTTGCTAAAGAACCCTTCGAAATTAAATCTGGAGCATGTGGGACTGTTGTTAGAAATGCTCAGATGAAAATTGTGGATCCTGATACTGGCAAATCTCTCCCTAGGAACCAATCTGGAGAGATTTGTATAAGAGGCGATCAAATTATGAAAG : GTTACCTAAATGATCCAGAGGCCACTACGGGAACAATAGACAAAGAAAGGTGGTTACATACGGGCGATATTGGTTATATTGACATCGATGATGAGCTTTTCATTGTGGATCGTTTAAAGGAATTGATAAAATACAAAGGATTTCAAGTGGCTCCTGCTGAACTTGAAGCCCTTCTCCTCAATCATCCCAATATTTCAGATGCTGCTGTTGTTTC : AATGAAAGACGAGCAAGCAGGAGAAGTTCCTGTGGCTTTTGTTGTCAGATCAAATGGCTCCACAATTACTGAAGATGAAGTCAAAGAATTCATAACAAAGCAG : GTGATATTCTATAAAAGGATAAAGAGGGTATTTTTTGTGGATGTTGTTCCTAAATCTCCATCGGGCAAAATCCTTAGAAAGGACTTGAGAGCTAAATTAGCTGCTGGATATCCAAATTAAATACTACTTCATACTTTAATGGCGATCGAATAACTATAACCAATATTTTTTTTTTTGTTATTGAAAGTTACATATTTTTGTTCTTTGAATTGTATTTGTACGTTAAACCACCTGCCTCTATACGGTTAAAATTAATTAACCAATTTGGCAAAAGGAGAAAAATGTATGTATATTTGACTGTAAGGGACTTATTTTTTTTTTTAAATGTCTCA</gDNA_template>
            <first_frame> K  S  L  Q  H  F  F  F  I  A  L  S  E  P  K  I  S  N  Y  S  T  T  F  F  F  Y  S  S  S  R  Q  V  S  K  A  K  S  K  *  Q  M  Q  R  W  R  T  K  Q  N  K  T  I  *  F  F  D  R  S  S  L  I  F  T  S  L  I  I  F  R  Y  T  R  I  V  S  K  I  F  R  N  S  N  R  A  R  V  *  S  T  G  R  I  I  K  F  I  H  T  L  M  L  S  S  I  R  E  K  L  L  L  V  F  I  N  N  L  G  S  N  K  R  I  L  L  *  S  Y  C  Q  I  H  Q  N  L  C  M  S  S  L  V  R  R  T  S  A  R  Y  R  R  W  L  I  L  C  L  R  L  L  K  L  *  S  K  L  R  L  L  M  L  R  S  L  S  L  N  R  V  M  *  T  R  *  R  I  M  H  W  R  M  V  *  R  S  C  V  S  I  R  P  L  T  V  V  F  T  F  L  S  *  F  R  P  M  S  M  I  S  L  R :   *  K  S  N  P  M  M  W  W  R  C  R  I  P  P  E  Q  R  V  Y  L  K  V  S  C  *  H  T  R  D  *  S  Q  V  W  H  N  K  L  M  V  K  I  Q  T  C  T  S  I  V  R  M  Y  C  F  V  C  C  L  C  F  I  Y  I  P  S  I  P  F  C  Y  V  D  *  E  L  E  Q  Q  F  *  L  C  K  N  L  T  L  F  H  S  W  N  *  Y  K  I  T  R  *  P  *  G  H  L  C  H  L  L  F  W  L  L  L  R  V  L  W  L  I  I  M  I  Y  H  R  *  E  P  L  C  L  G  L  H  H  *  E  K  N  L  K  T  L  F  E  P  N  F  L  M  L  N  L  V  K :   V  T  E  *  Q  K  P  D  Q  C  W  L  C  A  W  H  L  L  K  N  P  S  K  L  N  L  E  H  V  G  L  L  L  E  M  L  R  *  K  L  W  I  L  I  L  A  N  L  S  L  G  T  N  L  E  R  F  V  *  E  A  I  K  L  *  K  :  V  T  *  M  I  Q  R  P  L  R  E  Q  *  T  K  K  G  G  Y  I  R  A  I  L  V  I  L  T  S  M  M  S  F  S  L  W  I  V  *  R  N  *  *  N  T  K  D  F  K  W  L  L  L  N  L  K  P  F  S  S  I  I  P  I  F  Q  M  L  L  L  F   : Q  *  K  T  S  K  Q  E  K  F  L  W  L  L  L  S  D  Q  M  A  P  Q  L  L  K  M  K  S  K  N  S  *  Q  S  R :   *  Y  S  I  K  G  *  R  G  Y  F  L  W  M  L  F  L  N  L  H  R  A  K  S  L  E  R  T  *  E  L  N  *  L  L  D  I  Q  I  K  Y  Y  F  I  L  *  W  R  S  N  N  Y  N  Q  Y  F  F  F  C  Y  *  K  L  H  I  F  V  L  *  I  V  F  V  R  *  T  T  C  L  Y  T  V  K  I  N  *  P  I  W  Q  K  E  K  N  V  C  I  F  D  C  K  G  L  I  F  F  F  K  C  L  </first_frame>
            <second_frame>  K  V  F  N  T  F  S  L  L  L  L  A  S  P  K  F  Q  T  I  V  L  H  F  F  F  I  L  L  L  V  K  S  Q  K  L  N  Q  N  D  K  C  N  D  G  E  R  N  K  T  R  R  Y  N  F  S  I  E  A  P  *  Y  L  H  P  *  S  S  S  V  T  L  V  L  F  R  K  Y  F  G  I  Q  I  A  P  V  F  N  R  R  G  E  *  S  N  L  Y  I  R  *  C  *  A  Q  F  E  K  S  C  C  W  S  S  *  T  I  W  D  P  T  K  G  Y  Y  Y  D  L  I  A  K  F  T  R  I  C  V  C  L  P  W  C  V  V  P  R  R  D  I  D  D  G  *  S  F  V  Y  V  C  *  S  C  E  A  S  *  G  F  *  C  *  D  H  C  H  S  I  V  S  C  E  Q  G  E  G  L  C  I  G  E  W  C  E  D  R  V  Y  R  S  G  P  *  R  L  C  S  L  F  *  V  D  S  G  R  *  A  *  Y  P  *   : G  E  N  P  T  R  *  C  G  G  V  A  V  F  L  R  N  N  G  F  T  *  R  C  H  V  D  T  Q  G  T  S  H  K  C  G  T  T  S  *  W  *  K  S  K  L  V  H  P  *  *  G  C  I  A  L  C  V  A  F  V  S  Y  I  F  P  Q  F  R  F  A  M  W  I  K  S  W  S  S  N  F  D  Y  A  K  I  *  H  C  S  I  L  G  I  N  T  K  L  Q  G  D  H  R  A  I  C  A  T  Y  C  F  G  Y  C  *  E  S  Y  G  *  *  L  *  F  I  I  G  K  N  R  Y  V  W  G  C  T  I  R  K  R  T  *  R  H  C  S  S  Q  I  S  *  C  *  T  W  S   : R  L  R  N  D  R  S  R  T  S  V  G  Y  V  L  G  I  C  *  R  T  L  R  N  *  I  W  S  M  W  D  C  C  *  K  C  S  D  E  N  C  G  S  *  Y  W  Q  I  S  P  *  E  P  I  W  R  D  L  Y  K  R  R  S  N  Y  E  R :   L  P  K  *  S  R  G  H  Y  G  N  N  R  Q  R  K  V  V  T  Y  G  R  Y  W  L  Y  *  H  R  *  *  A  F  H  C  G  S  F  K  G  I  D  K  I  Q  R  I  S  S  G  S  C  *  T  *  S  P  S  P  Q  S  S  Q  Y  F  R  C  C  C  C  F  :  N  E  R  R  A  S  R  R  S  S  C  G  F  C  C  Q  I  K  W  L  H  N  Y  *  R  *  S  Q  R  I  H  N  K  A   : G  D  I  L  *  K  D  K  E  G  I  F  C  G  C  C  S  *  I  S  I  G  Q  N  P  *  K  G  L  E  S  *  I  S  C  W  I  S  K  L  N  T  T  S  Y  F  N  G  D  R  I  T  I  T  N  I  F  F  F  V  I  E  S  Y  I  F  L  F  F  E  L  Y  L  Y  V  K  P  P  A  S  I  R  L  K  L  I  N  Q  F  G  K  R  R  K  M  Y  V  Y  L  T  V  R  D  L  F  F  F  L  N  V  S </second_frame>
            <third_frame>   K  S  S  T  L  F  L  Y  C  S  *  R  A  Q  N  F  K  L  *  Y  Y  I  F  F  L  F  F  F  S  S  S  L  K  S  *  I  K  M  T  N  A  T  M  E  N  E  T  K  Q  D  D  I  I  F  R  S  K  L  P  D  I  Y  I  P  N  H  L  P  L  H  S  Y  C  F  E  N  I  S  E  F  K  S  R  P  C  L  I  D  G  A  N  N  Q  I  Y  T  Y  A  D  V  E  L  N  S  R  K  V  A  A  G  L  H  K  Q  F  G  I  Q  Q  K  D  T  I  M  I  L  L  P  N  S  P  E  F  V  Y  V  F  L  G  A  S  Y  L  G  A  I  S  T  M  A  N  P  L  F  T  S  A  E  V  V  K  Q  A  K  A  S  N  A  K  I  I  V  T  Q  S  C  H  V  N  K  V  K  D  Y  A  L  E  N  G  V  K  I  V  C  I  D  P  A  P  D  G  C  V  H  F  S  E  L  I  Q  A  D  E  H  D  I  P  E  :  V  K  I  Q  P  D  D  V  V  A  L  P  Y  S  S  G  T  T  G  L  P  K  G  V  M  L  T  H  K  G  L  V  T  S  V  A  Q  Q  V  D  G  E  N  P  N  L  Y  I  H  S  E  D  V  L  L  C  V  L  P  L  F  H  I  Y  S  L  N  S  V  L  L  C  G  L  R  V  G  A  A  I  L  I  M  Q  K  F  D  I  V  P  F  L  E  L  I  Q  N  Y  K  V  T  I  G  P  F  V  P  P  I  V  L  A  I  A  K  S  P  M  V  D  N  Y  D  L  S  S  V  R  T  V  M  S  G  A  A  P  L  G  K  E  L  E  D  T  V  R  A  K  F  P  N  A  K  L  G  Q  :  G  Y  G  M  T  E  A  G  P  V  L  A  M  C  L  A  F  A  K  E  P  F  E  I  K  S  G  A  C  G  T  V  V  R  N  A  Q  M  K  I  V  D  P  D  T  G  K  S  L  P  R  N  Q  S  G  E  I  C  I  R  G  D  Q  I  M  K   : G  Y  L  N  D  P  E  A  T  T  G  T  I  D  K  E  R  W  L  H  T  G  D  I  G  Y  I  D  I  D  D  E  L  F  I  V  D  R  L  K  E  L  I  K  Y  K  G  F  Q  V  A  P  A  E  L  E  A  L  L  L  N  H  P  N  I  S  D  A  A  V  V  S :   M  K  D  E  Q  A  G  E  V  P  V  A  F  V  V  R  S  N  G  S  T  I  T  E  D  E  V  K  E  F  I  T  K  Q  :  V  I  F  Y  K  R  I  K  R  V  F  F  V  D  V  V  P  K  S  P  S  G  K  I  L  R  K  D  L  R  A  K  L  A  A  G  Y  P  N  *  I  L  L  H  T  L  M  A  I  E  *  L  *  P  I  F  F  F  L  L  L  K  V  T  Y  F  C  S  L  N  C  I  C  T  L  N  H  L  P  L  Y  G  *  N  *  L  T  N  L  A  K  G  E  K  C  M  Y  I  *  L  *  G  T  Y  F  F  F  *  M  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69078" stop="69626"/>
                    <exon start="70078" stop="70545"/>
                    <exon start="71341" stop="71539"/>
                    <exon start="71951" stop="72164"/>
                    <exon start="72260" stop="72362"/>
                    <exon start="72638" stop="72757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKMTNATMENETKQDDIIFRSKLPDIYIPNHLPLHSYCFENISEFKSRPCLIDGANNQIYTYADVELNSRKVAAGLHKQFGIQQKDTIMILLPNSPEFVYVFLGASYLGAISTMANPLFTSAEVVKQAKASNAKIIVTQSCHVNKVKDYALENGVKIVCIDPAPDGCVHFSELIQADEHDIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIHSEDVLLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVPFLELIQNYKVTIGPFVPPIVLAIAKSPMVDNYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEIKSGACGTVVRNAQMKIVDPDTGKSLPRNQSGEICIRGDQIMKGYLNDPEATTGTIDKERWLHTGDIGYIDIDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVSMKDEQAGEVPVAFVVRSNGSTITEDEVKEFITKQVIFYKRIKRVFFVDVVPKSPSGKILRKDLRAKLAAGYPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72733" stop="72969"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISCWISKLNTTSYFNGDRITITNIFFFVIESYIFLFFELYLYVKPPASIRLKLINQFGKRRKMYVYLTVRDLFFFLNVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="97797" PGL_stop="99088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97797" e_stop="97983"/>
            <exon e_start="98063" e_stop="98145"/>
            <exon e_start="98390" e_stop="98398"/>
            <exon e_start="98580" e_stop="98668"/>
            <exon e_start="98808" e_stop="98881"/>
            <exon e_start="98954" e_stop="99088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97797" e_stop="97983" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="97984" i_stop="98062" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98063" e_stop="98145" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98146" i_stop="98389" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98390" e_stop="98398" e_length="9"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98399" i_stop="98579" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98580" e_stop="98668" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.993">
            <gDNA_intron_boundary i_start="98669" i_stop="98807" i_length="139"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98808" e_stop="98881" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="98882" i_stop="98953" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98954" e_stop="99088" e_length="135"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97797" stop="97983"/>
              <exon start="98063" stop="98145"/>
              <exon start="98390" stop="98398"/>
              <exon start="98580" stop="98668"/>
              <exon start="98808" stop="98881"/>
              <exon start="98954" stop="99088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTACTTCACTATATTTGGGCAAACTTTCAAATAATATATATGGCGAAAACCTCAAAATTGAGTAAACAAAACACTTGTTTAAGCAACAAGGATACTGATAATAGCATTTCTAAAGTGAAGACGAAGCGAAAACCCAGAGACTCGCCGCCTCAACGACGTAGTTCAATATACAGAGGTGTCACCAG : GCACAGATGGACGGGTCGATATGAAGCTCATTTATGGGATAAAAATTGTTGGAACGAATCGCAGACTAAAAAAGGAAGACAAG : TATACTTGG : GGGCCTACAATGAGGAAGAAGCAGCTGCACATGCATATGACTTGGCAGCATTAAAGTATTGGGGTCAACACACAATCCTTAATTTCTCT : GTGTCTACTTATGAAAAAGAGATAAAAGAAATGGAAACTCAATCAAGAGAAGAATATATTGGTTCTTTGAGAAG : GAGAAGTAGTGGATTTTCAAGAGGAGTCTCGAGATATAGAGGAGTAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> I  Y  F  T  I  F  G  Q  T  F  K  *  Y  I  W  R  K  P  Q  N  *  V  N  K  T  L  V  *  A  T  R  I  L  I  I  A  F  L  K  *  R  R  S  E  N  P  E  T  R  R  L  N  D  V  V  Q  Y  T  E  V  S  P   : G  T  D  G  R  V  D  M  K  L  I  Y  G  I  K  I  V  G  T  N  R  R  L  K  K  E  D  K  :  Y  T  W  :  G  P  T  M  R  K  K  Q  L  H  M  H  M  T  W  Q  H  *  S  I  G  V  N  T  Q  S  L  I  S  L :   C  L  L  M  K  K  R  *  K  K  W  K  L  N  Q  E  K  N  I  L  V  L  *  E   : G  E  V  V  D  F  Q  E  E  S  R  D  I  E  E  *  Q  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  F  T  S  L  Y  L  G  K  L  S  N  N  I  Y  G  E  N  L  K  I  E  *  T  K  H  L  F  K  Q  Q  G  Y  *  *  *  H  F  *  S  E  D  E  A  K  T  Q  R  L  A  A  S  T  T  *  F  N  I  Q  R  C  H  Q  :  A  Q  M  D  G  S  I  *  S  S  F  M  G  *  K  L  L  E  R  I  A  D  *  K  R  K  T  S :   I  L  G :   G  L  Q  *  G  R  S  S  C  T  C  I  *  L  G  S  I  K  V  L  G  S  T  H  N  P  *  F  L   : C  V  Y  L  *  K  R  D  K  R  N  G  N  S  I  K  R  R  I  Y  W  F  F  E  K  :  E  K  *  W  I  F  K  R  S  L  E  I  *  R  S  S  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   L  L  H  Y  I  W  A  N  F  Q  I  I  Y  M  A  K  T  S  K  L  S  K  Q  N  T  C  L  S  N  K  D  T  D  N  S  I  S  K  V  K  T  K  R  K  P  R  D  S  P  P  Q  R  R  S  S  I  Y  R  G  V  T  R :   H  R  W  T  G  R  Y  E  A  H  L  W  D  K  N  C  W  N  E  S  Q  T  K  K  G  R  Q   : V  Y  L   : G  A  Y  N  E  E  E  A  A  A  H  A  Y  D  L  A  A  L  K  Y  W  G  Q  H  T  I  L  N  F  S  :  V  S  T  Y  E  K  E  I  K  E  M  E  T  Q  S  R  E  E  Y  I  G  S  L  R  R :   R  S  S  G  F  S  R  G  V  S  R  Y  R  G  V  A  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97799" stop="97983"/>
                    <exon start="98063" stop="98145"/>
                    <exon start="98390" stop="98398"/>
                    <exon start="98580" stop="98668"/>
                    <exon start="98808" stop="98881"/>
                    <exon start="98954" stop="99086"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHYIWANFQIIYMAKTSKLSKQNTCLSNKDTDNSISKVKTKRKPRDSPPQRRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQTKKGRQVYLGAYNEEEAAAHAYDLAALKYWGQHTILNFSVSTYEKEIKEMETQSREEYIGSLRRRSSGFSRGVSRYRGVAIFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="123763" PGL_stop="126730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123763" e_stop="123829"/>
            <exon e_start="124203" e_stop="124327"/>
            <exon e_start="124556" e_stop="124600"/>
            <exon e_start="124705" e_stop="124786"/>
            <exon e_start="124870" e_stop="124938"/>
            <exon e_start="125013" e_stop="125183"/>
            <exon e_start="125307" e_stop="125372"/>
            <exon e_start="126282" e_stop="126350"/>
            <exon e_start="126639" e_stop="126730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123763" e_stop="123829" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="123830" i_stop="124202" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124203" e_stop="124327" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124328" i_stop="124555" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124556" e_stop="124600" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.974">
            <gDNA_intron_boundary i_start="124601" i_stop="124704" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124705" e_stop="124786" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124787" i_stop="124869" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124870" e_stop="124938" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.913">
            <gDNA_intron_boundary i_start="124939" i_stop="125012" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125013" e_stop="125183" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125184" i_stop="125306" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="125307" e_stop="125372" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.854" acc_prob="0.974">
            <gDNA_intron_boundary i_start="125373" i_stop="126281" i_length="909"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="126282" e_stop="126350" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.873" acc_prob="0.999">
            <gDNA_intron_boundary i_start="126351" i_stop="126638" i_length="288"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="126639" e_stop="126730" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123763" stop="123829"/>
              <exon start="124203" stop="124327"/>
              <exon start="124556" stop="124600"/>
              <exon start="124705" stop="124786"/>
              <exon start="124870" stop="124938"/>
              <exon start="125013" stop="125183"/>
              <exon start="125307" stop="125372"/>
              <exon start="126282" stop="126350"/>
              <exon start="126639" stop="126730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTACGTGAAGTGCTAAAGGGTTTAGAATACCTTCATGATCATGGCTACATTCATCGGGATGTCAAA : GCTGGAAATATTCTCATTGATTCACGTGGTGGAATAAAGTTGGGAGATTTCGGTGTATCGGCCTACATGTTTGATTCAGGTGACAGGCAGCATATGCGGAATACATTTGCTGGAACTCCTTGTTG : GATGGCACCGGAGGTCATGGAGCAAGTGCATGGTTACGATTTCAA : AGCTGATATTTGGTCTTTTGGCATAACTGCTTTAGAGCTTGCTCATGGACATGCTCCTTTCTCAAAATACCCTCCAATGAAG : GTGTTGCTAATGACATTGAAAAATGAACCTCCACGCCTTGATTCTGAGAGGGACAGGAAGTTCTCGAAG : TCCTTTAGGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAAAGGCCTACAGCCAAAAAGTTGTTGAAGCATCCTTTCTTTAAAAAAGCTAGGTCCAATGATTATGTAGCAAGAACATTGTTGGAAGGCTTGCCATCTCTTGGTGATCGCATGCAAGAATTGAAG : AGGAAAGAAGAAGAATTGCTAGCACAAAAGAAGATGCCAGATGGGCAGAAAGAAGAAATGTCACAG : AATGAATATAAACGTGGGATTAGCTGCTGGAGCTTTGATGTTGAAGATTTGAAGGCACAGGCTTCCTTG : ATTCCAGATGAGGAAATTATTGGTGAGAATGACCACGGGGGGAGTTCAGATGCGCTCGCAGGAGTTGACAACCAAGGAAACCGGCTTCAATA</gDNA_template>
            <first_frame> S  T  *  S  A  K  G  F  R  I  P  S  *  S  W  L  H  S  S  G  C  Q   : S  W  K  Y  S  H  *  F  T  W  W  N  K  V  G  R  F  R  C  I  G  L  H  V  *  F  R  *  Q  A  A  Y  A  E  Y  I  C  W  N  S  L  L  :  D  G  T  G  G  H  G  A  S  A  W  L  R  F  Q  :  S  *  Y  L  V  F  W  H  N  C  F  R  A  C  S  W  T  C  S  F  L  K  I  P  S  N  E   : G  V  A  N  D  I  E  K  *  T  S  T  P  *  F  *  E  G  Q  E  V  L  E   : V  L  *  A  N  D  C  *  L  L  G  K  R  S  F  K  K  A  Y  S  Q  K  V  V  E  A  S  F  L  *  K  S  *  V  Q  *  L  C  S  K  N  I  V  G  R  L  A  I  S  W  *  S  H  A  R  I  E   : E  E  R  R  R  I  A  S  T  K  E  D  A  R  W  A  E  R  R  N  V  T   : E  *  I  *  T  W  D  *  L  L  E  L  *  C  *  R  F  E  G  T  G  F  L   : D  S  R  *  G  N  Y  W  *  E  *  P  R  G  E  F  R  C  A  R  R  S  *  Q  P  R  K  P  A  S  I </first_frame>
            <second_frame>  L  R  E  V  L  K  G  L  E  Y  L  H  D  H  G  Y  I  H  R  D  V  K  :  A  G  N  I  L  I  D  S  R  G  G  I  K  L  G  D  F  G  V  S  A  Y  M  F  D  S  G  D  R  Q  H  M  R  N  T  F  A  G  T  P  C  W :   M  A  P  E  V  M  E  Q  V  H  G  Y  D  F  K :   A  D  I  W  S  F  G  I  T  A  L  E  L  A  H  G  H  A  P  F  S  K  Y  P  P  M  K  :  V  L  L  M  T  L  K  N  E  P  P  R  L  D  S  E  R  D  R  K  F  S  K  :  S  F  R  Q  M  I  A  S  C  L  V  K  D  P  S  K  R  P  T  A  K  K  L  L  K  H  P  F  F  K  K  A  R  S  N  D  Y  V  A  R  T  L  L  E  G  L  P  S  L  G  D  R  M  Q  E  L  K  :  R  K  E  E  E  L  L  A  Q  K  K  M  P  D  G  Q  K  E  E  M  S  Q  :  N  E  Y  K  R  G  I  S  C  W  S  F  D  V  E  D  L  K  A  Q  A  S  L  :  I  P  D  E  E  I  I  G  E  N  D  H  G  G  S  S  D  A  L  A  G  V  D  N  Q  G  N  R  L  Q   </second_frame>
            <third_frame>   Y  V  K  C  *  R  V  *  N  T  F  M  I  M  A  T  F  I  G  M  S  K :   L  E  I  F  S  L  I  H  V  V  E  *  S  W  E  I  S  V  Y  R  P  T  C  L  I  Q  V  T  G  S  I  C  G  I  H  L  L  E  L  L  V   : G  W  H  R  R  S  W  S  K  C  M  V  T  I  S   : K  L  I  F  G  L  L  A  *  L  L  *  S  L  L  M  D  M  L  L  S  Q  N  T  L  Q  *  R :   C  C  *  *  H  *  K  M  N  L  H  A  L  I  L  R  G  T  G  S  S  R  S :   P  L  G  K  *  L  L  V  A  W  *  K  I  L  Q  K  G  L  Q  P  K  S  C  *  S  I  L  S  L  K  K  L  G  P  M  I  M  *  Q  E  H  C  W  K  A  C  H  L  L  V  I  A  C  K  N  *  R :   G  K  K  K  N  C  *  H  K  R  R  C  Q  M  G  R  K  K  K  C  H  R :   M  N  I  N  V  G  L  A  A  G  A  L  M  L  K  I  *  R  H  R  L  P  * :   F  Q  M  R  K  L  L  V  R  M  T  T  G  G  V  Q  M  R  S  Q  E  L  T  T  K  E  T  G  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123764" stop="123829"/>
                    <exon start="124203" stop="124327"/>
                    <exon start="124556" stop="124600"/>
                    <exon start="124705" stop="124786"/>
                    <exon start="124870" stop="124938"/>
                    <exon start="125013" stop="125183"/>
                    <exon start="125307" stop="125372"/>
                    <exon start="126282" stop="126350"/>
                    <exon start="126639" stop="126728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LREVLKGLEYLHDHGYIHRDVKAGNILIDSRGGIKLGDFGVSAYMFDSGDRQHMRNTFAGTPCWMAPEVMEQVHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLKNEPPRLDSERDRKFSKSFRQMIASCLVKDPSKRPTAKKLLKHPFFKKARSNDYVARTLLEGLPSLGDRMQELKRKEEELLAQKKMPDGQKEEMSQNEYKRGISCWSFDVEDLKAQASLIPDEEIIGENDHGGSSDALAGVDNQGNRLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="130071" PGL_stop="129082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130071" e_stop="129082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="130071" e_stop="129082" e_length="990"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130071" stop="129082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACAAGTATAAAAAAAAGGGGGGAAAAGGCAACCCTAGTGCTGGAGTTGAACTCAGTTGGAAAGCAGCCCATACCTTCACCCTAAAAGTGGGATGAAATTTAAATCTGTTAACTCTGGTATCTCATTTACAAAGTCAGTTATCTCCTACACTTTGATGTAGACTTCACACAAATTTTTGTCACTTTGGGCTTTTGTTTTCTGTTTTATATTTTTGAAGCTCTTCCTGGGAACGCTCGAGCCTACACATCAAGTAAACAGACGCTTCAAGACTACTATTTATGATATCCAAAATTAACAGGCAAGATTAATGTATAATCATAATGATAATACCTCCATCGTAAATCAGCAACTTCACGATGTAAATCCCTCTCCCTGTCAAGAGCTGCCTCCAACTACAGAGAAAGAGAGAAGGGTGTTATATAGTATGTTGGATCCTCCAAGAAATAAAGAAACGAGAGAAATTATAGGATAGTAATTCCTGGTTATGGTTGAATTTGCGGAGGATGTCGCAACAAGATTAGTACAAATCCATACCAGTGATTTCTCTACTCCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTTCATATAGATAAGATACACAAAAATTCAAGAGGCATTAGTTGCTGCACCTGTGGAGTCGGCCACTTGCCTCATTGCACTAAGAATACTCTCCTGTTAAAATAAAAACAGTTTTACAACGTTTCTAAGCAGAACAAAAAAACTTAGCAAGTCATAATTTTAGATCCATTCTTACTCTTCCAATAATAGTTGCCTGTAAAGCATTCTGCAACACTGGGAATATGGACTGGGAAGAATGATTAGCTGGTGTAGGATCACTCGGCAATGGTTGAGTAGCAGTCAGATTTTCTGGAGTCGCCTGCATAATCCATAACTTCTTTTCATAAAAACAATAAAGAAAACGGAAAAGAAGCTGAGATAAGATCAGTG</gDNA_template>
            <first_frame> R  N  K  Y  K  K  K  G  G  K  G  N  P  S  A  G  V  E  L  S  W  K  A  A  H  T  F  T  L  K  V  G  *  N  L  N  L  L  T  L  V  S  H  L  Q  S  Q  L  S  P  T  L  *  C  R  L  H  T  N  F  C  H  F  G  L  L  F  S  V  L  Y  F  *  S  S  S  W  E  R  S  S  L  H  I  K  *  T  D  A  S  R  L  L  F  M  I  S  K  I  N  R  Q  D  *  C  I  I  I  M  I  I  P  P  S  *  I  S  N  F  T  M  *  I  P  L  P  V  K  S  C  L  Q  L  Q  R  K  R  E  G  C  Y  I  V  C  W  I  L  Q  E  I  K  K  R  E  K  L  *  D  S  N  S  W  L  W  L  N  L  R  R  M  S  Q  Q  D  *  Y  K  S  I  P  V  I  S  L  L  Q  L  N  L  M  D  Y  I  L  H  P  W  Q  G  *  L  N  R  *  S  *  T  F  H  I  D  K  I  H  K  N  S  R  G  I  S  C  C  T  C  G  V  G  H  L  P  H  C  T  K  N  T  L  L  L  K  *  K  Q  F  Y  N  V  S  K  Q  N  K  K  T  *  Q  V  I  I  L  D  P  F  L  L  F  Q  *  *  L  P  V  K  H  S  A  T  L  G  I  W  T  G  K  N  D  *  L  V  *  D  H  S  A  M  V  E  *  Q  S  D  F  L  E  S  P  A  *  S  I  T  S  F  H  K  N  N  K  E  N  G  K  E  A  E  I  R  S  V </first_frame>
            <second_frame>  E  T  S  I  K  K  R  G  E  K  A  T  L  V  L  E  L  N  S  V  G  K  Q  P  I  P  S  P  *  K  W  D  E  I  *  I  C  *  L  W  Y  L  I  Y  K  V  S  Y  L  L  H  F  D  V  D  F  T  Q  I  F  V  T  L  G  F  C  F  L  F  Y  I  F  E  A  L  P  G  N  A  R  A  Y  T  S  S  K  Q  T  L  Q  D  Y  Y  L  *  Y  P  K  L  T  G  K  I  N  V  *  S  *  *  *  Y  L  H  R  K  S  A  T  S  R  C  K  S  L  S  L  S  R  A  A  S  N  Y  R  E  R  E  K  G  V  I  *  Y  V  G  S  S  K  K  *  R  N  E  R  N  Y  R  I  V  I  P  G  Y  G  *  I  C  G  G  C  R  N  K  I  S  T  N  P  Y  Q  *  F  L  Y  S  S  *  I  *  W  I  T  S  C  I  H  G  K  V  S  *  T  D  E  V  R  P  F  I  *  I  R  Y  T  K  I  Q  E  A  L  V  A  A  P  V  E  S  A  T  C  L  I  A  L  R  I  L  S  C  *  N  K  N  S  F  T  T  F  L  S  R  T  K  K  L  S  K  S  *  F  *  I  H  S  Y  S  S  N  N  S  C  L  *  S  I  L  Q  H  W  E  Y  G  L  G  R  M  I  S  W  C  R  I  T  R  Q  W  L  S  S  S  Q  I  F  W  S  R  L  H  N  P  *  L  L  F  I  K  T  I  K  K  T  E  K  K  L  R  *  D  Q   </second_frame>
            <third_frame>   K  Q  V  *  K  K  G  G  K  R  Q  P  *  C  W  S  *  T  Q  L  E  S  S  P  Y  L  H  P  K  S  G  M  K  F  K  S  V  N  S  G  I  S  F  T  K  S  V  I  S  Y  T  L  M  *  T  S  H  K  F  L  S  L  W  A  F  V  F  C  F  I  F  L  K  L  F  L  G  T  L  E  P  T  H  Q  V  N  R  R  F  K  T  T  I  Y  D  I  Q  N  *  Q  A  R  L  M  Y  N  H  N  D  N  T  S  I  V  N  Q  Q  L  H  D  V  N  P  S  P  C  Q  E  L  P  P  T  T  E  K  E  R  R  V  L  Y  S  M  L  D  P  P  R  N  K  E  T  R  E  I  I  G  *  *  F  L  V  M  V  E  F  A  E  D  V  A  T  R  L  V  Q  I  H  T  S  D  F  S  T  P  A  E  F  D  G  L  H  P  A  S  M  A  R  L  A  E  Q  M  K  L  D  L  S  Y  R  *  D  T  Q  K  F  K  R  H  *  L  L  H  L  W  S  R  P  L  A  S  L  H  *  E  Y  S  P  V  K  I  K  T  V  L  Q  R  F  *  A  E  Q  K  N  L  A  S  H  N  F  R  S  I  L  T  L  P  I  I  V  A  C  K  A  F  C  N  T  G  N  M  D  W  E  E  *  L  A  G  V  G  S  L  G  N  G  *  V  A  V  R  F  S  G  V  A  C  I  I  H  N  F  F  S  *  K  Q  *  R  K  R  K  R  S  *  D  K  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0109C03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="130093" PGL_stop="130611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130093" e_stop="130611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="130093" e_stop="130611" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130093" stop="130611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAATTTGAGTACATGTTGAAGTTTTAGAGAATATCATTCTTGGTGATATTAATTCATATTTCTATTTAAAACCTTTACAAGAATTTGCCCCGTTTTTCTTGGTTGCGCCATCGGAAAGATTGTCGTGGGAGGTAAAATACCTTTTTTATTAAAGTGTATTTTTCTACACGTAGTTTCAGTAGCTAAATTAACCTCAGTTAAGATTGGCTCACTCGAATGGGTTGAGATTCTTCCATATTTTGGTGACTTGAATCTCTCTTGCTAACCATTATCATGCTTCTCCGCTAGTTCGTGCCTTGATGTACTTTCCTTGTCCCTGGTTCTACTTTTCGCCTAAAATACACTAGGAGCTGAGTTGAAGAAATCTTAGTGCCATGGGATGCTTAGCTTCAGAGAGTTGATCAGGCTTTATAATTTCCACAATCTCCCCATCAACCAGCAGGCACACTATATCAGCTATTCTCTGTATTTGCTTGATGCTATGAGAAACTATCACAATTGTCATCTTCTGATCCTTC</gDNA_template>
            <first_frame> L  I  *  V  H  V  E  V  L  E  N  I  I  L  G  D  I  N  S  Y  F  Y  L  K  P  L  Q  E  F  A  P  F  F  L  V  A  P  S  E  R  L  S  W  E  V  K  Y  L  F  Y  *  S  V  F  F  Y  T  *  F  Q  *  L  N  *  P  Q  L  R  L  A  H  S  N  G  L  R  F  F  H  I  L  V  T  *  I  S  L  A  N  H  Y  H  A  S  P  L  V  R  A  L  M  Y  F  P  C  P  W  F  Y  F  S  P  K  I  H  *  E  L  S  *  R  N  L  S  A  M  G  C  L  A  S  E  S  *  S  G  F  I  I  S  T  I  S  P  S  T  S  R  H  T  I  S  A  I  L  C  I  C  L  M  L  *  E  T  I  T  I  V  I  F  *  S  F </first_frame>
            <second_frame>  *  F  E  Y  M  L  K  F  *  R  I  S  F  L  V  I  L  I  H  I  S  I  *  N  L  Y  K  N  L  P  R  F  S  W  L  R  H  R  K  D  C  R  G  R  *  N  T  F  F  I  K  V  Y  F  S  T  R  S  F  S  S  *  I  N  L  S  *  D  W  L  T  R  M  G  *  D  S  S  I  F  W  *  L  E  S  L  L  L  T  I  I  M  L  L  R  *  F  V  P  *  C  T  F  L  V  P  G  S  T  F  R  L  K  Y  T  R  S  *  V  E  E  I  L  V  P  W  D  A  *  L  Q  R  V  D  Q  A  L  *  F  P  Q  S  P  H  Q  P  A  G  T  L  Y  Q  L  F  S  V  F  A  *  C  Y  E  K  L  S  Q  L  S  S  S  D  P   </second_frame>
            <third_frame>   N  L  S  T  C  *  S  F  R  E  Y  H  S  W  *  Y  *  F  I  F  L  F  K  T  F  T  R  I  C  P  V  F  L  G  C  A  I  G  K  I  V  V  G  G  K  I  P  F  L  L  K  C  I  F  L  H  V  V  S  V  A  K  L  T  S  V  K  I  G  S  L  E  W  V  E  I  L  P  Y  F  G  D  L  N  L  S  C  *  P  L  S  C  F  S  A  S  S  C  L  D  V  L  S  L  S  L  V  L  L  F  A  *  N  T  L  G  A  E  L  K  K  S  *  C  H  G  M  L  S  F  R  E  L  I  R  L  Y  N  F  H  N  L  P  I  N  Q  Q  A  H  Y  I  S  Y  S  L  Y  L  L  D  A  M  R  N  Y  H  N  C  H  L  L  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130146" stop="130358"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIFLFKTFTRICPVFLGCAIGKIVVGGKIPFLLKCIFLHVVSVAKLTSVKIGSLEWVEILPYFGDLNLSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="131929" PGL_stop="130962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131929" e_stop="131773"/>
            <exon e_start="131425" e_stop="130962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131929" e_stop="131773" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="131772" i_stop="131426" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="131425" e_stop="130962" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131929" stop="131773"/>
              <exon start="131425" stop="130962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330898" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGACTTGTCTTCTTCATTTGGCACTTCTGTGTGCAGATAATTAAGTAACTACACTGAATCTCAGTTTGGTAACTCACATACCATGGAGATATCACAAAGTTGGAGCAAAATTAGTCCTCAGCTCCATAGCTCACACTCCTTGGAGATTTCATTAG : GAGAAAGAGGGCATCTACTAGCAGTGGAAATGAATGATATTAAAGGTGCAACAGAAACTAAGATTGAGGTTAGGGAACTGAACAAGGTATCAGATAAGGGTGATTCTATACTGAAGAGTGTTAGAGTTGACATAACAAGAGGAGTAATCATGGGGATTATTGGCCCCAGTGGTAGCGGAAAATCAACAATTTTACGAGCGCTAAATCGATTATGGGAACCCCTAAGGGCACTGTTTTTCTTGATGGTACTGATATTTGTGATCTGGATGTGCTCTGTCTTCGTCGTAAGGTTGGCATGTTGTTCCAGCTTCCAGTTCTCTTTGAAGGTATGGTTGTTAAATTGCTAAGATCAAACTAAAAACGCTAACCTATTAGTAAATTAGACAGACTTGAACTTGACCAATTTGAAAGTTCACTGTGTCTGATACAATCACAGTAACTACTGATGCTTGATTCATGAATAT</gDNA_template>
            <first_frame> K  D  L  S  S  S  F  G  T  S  V  C  R  *  L  S  N  Y  T  E  S  Q  F  G  N  S  H  T  M  E  I  S  Q  S  W  S  K  I  S  P  Q  L  H  S  S  H  S  L  E  I  S  L   : G  E  R  G  H  L  L  A  V  E  M  N  D  I  K  G  A  T  E  T  K  I  E  V  R  E  L  N  K  V  S  D  K  G  D  S  I  L  K  S  V  R  V  D  I  T  R  G  V  I  M  G  I  I  G  P  S  G  S  G  K  S  T  I  L  R  A  L  N  R  L  W  E  P  L  R  A  L  F  F  L  M  V  L  I  F  V  I  W  M  C  S  V  F  V  V  R  L  A  C  C  S  S  F  Q  F  S  L  K  V  W  L  L  N  C  *  D  Q  T  K  N  A  N  L  L  V  N  *  T  D  L  N  L  T  N  L  K  V  H  C  V  *  Y  N  H  S  N  Y  *  C  L  I  H  E  Y </first_frame>
            <second_frame>  K  T  C  L  L  H  L  A  L  L  C  A  D  N  *  V  T  T  L  N  L  S  L  V  T  H  I  P  W  R  Y  H  K  V  G  A  K  L  V  L  S  S  I  A  H  T  P  W  R  F  H  *  :  E  K  E  G  I  Y  *  Q  W  K  *  M  I  L  K  V  Q  Q  K  L  R  L  R  L  G  N  *  T  R  Y  Q  I  R  V  I  L  Y  *  R  V  L  E  L  T  *  Q  E  E  *  S  W  G  L  L  A  P  V  V  A  E  N  Q  Q  F  Y  E  R  *  I  D  Y  G  N  P  *  G  H  C  F  S  *  W  Y  *  Y  L  *  S  G  C  A  L  S  S  S  *  G  W  H  V  V  P  A  S  S  S  L  *  R  Y  G  C  *  I  A  K  I  K  L  K  T  L  T  Y  *  *  I  R  Q  T  *  T  *  P  I  *  K  F  T  V  S  D  T  I  T  V  T  T  D  A  *  F  M  N   </second_frame>
            <third_frame>   R  L  V  F  F  I  W  H  F  C  V  Q  I  I  K  *  L  H  *  I  S  V  W  *  L  T  Y  H  G  D  I  T  K  L  E  Q  N  *  S  S  A  P  *  L  T  L  L  G  D  F  I  R :   R  K  R  A  S  T  S  S  G  N  E  *  Y  *  R  C  N  R  N  *  D  *  G  *  G  T  E  Q  G  I  R  *  G  *  F  Y  T  E  E  C  *  S  *  H  N  K  R  S  N  H  G  D  Y  W  P  Q  W  *  R  K  I  N  N  F  T  S  A  K  S  I  M  G  T  P  K  G  T  V  F  L  D  G  T  D  I  C  D  L  D  V  L  C  L  R  R  K  V  G  M  L  F  Q  L  P  V  L  F  E  G  M  V  V  K  L  L  R  S  N  *  K  R  *  P  I  S  K  L  D  R  L  E  L  D  Q  F  E  S  S  L  C  L  I  Q  S  Q  *  L  L  M  L  D  S  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131887" stop="131773"/>
                    <exon start="131425" stop="131079"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNYTESQFGNSHTMEISQSWSKISPQLHSSHSLEISLGERGHLLAVEMNDIKGATETKIEVRELNKVSDKGDSILKSVRVDITRGVIMGIIGPSGSGKSTILRALNRLWEPLRALFFLMVLIFVIWMCSVFVVRLACCSSFQFSLKVWLLNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="138440" PGL_stop="137875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138440" e_stop="137875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="138440" e_stop="137875" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138440" stop="137875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTGACATCAGCCGTTACAACAATTCTTTAGGTGCAAACCCTAATGACATGAATATTCCCATGCCTAACACAAACAAAGAAGAAAAGACATCGTCGTCCGTCGTAGACTGCCCGGAGACACCACCGGAGGTGGAGAAATGTAGGAGGATTACTACATTCCCAGATGACATACAAACGTACTTTGACTGCCAAGATTCCAGTAGTAGCTTTGTGGAGGATAGTCATATTATTTTTGGAGATTTAGAGTCATTTGTGTTGCCTATGATGTTTGAATCATGTCATCAACTTGAGGAATTTTTATCTTTTTCTCCCTACTCAGAATTTGAACTCGAGACCTCTGATTAAAGTTGGAGCAACCTCACCTCACCATTGCACCACAATTGGTTACGTGAAGGGTATATCAATTGTTTCTTAGTTTTGATATTTTGAAGAATTAATTATTGAGTACTTTATTTCAAGAGAGGTGAGAAATTAAGGGTATAGAGTAGTATTATTTATGTTTCTTAGTAATTATGTGGTTGTTTAAACTTTAATGTTTAGATGAATGAGGCTCGTAGAGTTT</gDNA_template>
            <first_frame> K  F  *  H  Q  P  L  Q  Q  F  F  R  C  K  P  *  *  H  E  Y  S  H  A  *  H  K  Q  R  R  K  D  I  V  V  R  R  R  L  P  G  D  T  T  G  G  G  E  M  *  E  D  Y  Y  I  P  R  *  H  T  N  V  L  *  L  P  R  F  Q  *  *  L  C  G  G  *  S  Y  Y  F  W  R  F  R  V  I  C  V  A  Y  D  V  *  I  M  S  S  T  *  G  I  F  I  F  F  S  L  L  R  I  *  T  R  D  L  *  L  K  L  E  Q  P  H  L  T  I  A  P  Q  L  V  T  *  R  V  Y  Q  L  F  L  S  F  D  I  L  K  N  *  L  L  S  T  L  F  Q  E  R  *  E  I  K  G  I  E  *  Y  Y  L  C  F  L  V  I  M  W  L  F  K  L  *  C  L  D  E  *  G  S  *  S   </first_frame>
            <second_frame>  N  F  D  I  S  R  Y  N  N  S  L  G  A  N  P  N  D  M  N  I  P  M  P  N  T  N  K  E  E  K  T  S  S  S  V  V  D  C  P  E  T  P  P  E  V  E  K  C  R  R  I  T  T  F  P  D  D  I  Q  T  Y  F  D  C  Q  D  S  S  S  S  F  V  E  D  S  H  I  I  F  G  D  L  E  S  F  V  L  P  M  M  F  E  S  C  H  Q  L  E  E  F  L  S  F  S  P  Y  S  E  F  E  L  E  T  S  D  *  S  W  S  N  L  T  S  P  L  H  H  N  W  L  R  E  G  Y  I  N  C  F  L  V  L  I  F  *  R  I  N  Y  *  V  L  Y  F  K  R  G  E  K  L  R  V  *  S  S  I  I  Y  V  S  *  *  L  C  G  C  L  N  F  N  V  *  M  N  E  A  R  R  V  </second_frame>
            <third_frame>   I  L  T  S  A  V  T  T  I  L  *  V  Q  T  L  M  T  *  I  F  P  C  L  T  Q  T  K  K  K  R  H  R  R  P  S  *  T  A  R  R  H  H  R  R  W  R  N  V  G  G  L  L  H  S  Q  M  T  Y  K  R  T  L  T  A  K  I  P  V  V  A  L  W  R  I  V  I  L  F  L  E  I  *  S  H  L  C  C  L  *  C  L  N  H  V  I  N  L  R  N  F  Y  L  F  L  P  T  Q  N  L  N  S  R  P  L  I  K  V  G  A  T  S  P  H  H  C  T  T  I  G  Y  V  K  G  I  S  I  V  S  *  F  *  Y  F  E  E  L  I  I  E  Y  F  I  S  R  E  V  R  N  *  G  Y  R  V  V  L  F  M  F  L  S  N  Y  V  V  V  *  T  L  M  F  R  *  M  R  L  V  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0109C03.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138439" stop="138092"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFDISRYNNSLGANPNDMNIPMPNTNKEEKTSSSVVDCPETPPEVEKCRRITTFPDDIQTYFDCQDSSSSFVEDSHIIFGDLESFVLPMMFESCHQLEEFLSFSPYSEFELETSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 38 chains have been computed
$ 
$ memory statistics:
$ 104560 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 5228 bytes was the average size of a spliced alignment
$ 24984 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1561 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:33:00
-->
