<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:27:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342831" ref_strand="+" ref_description="SGN-U342831        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-50, score=160)">
      <seq>ggaaaaatttcatgaatatgctatcagatggagggaacaagctgctaggtttaaaccaccgatgaaggagtcagagatgattgacgtttttctccaggcgcaagaacctgattactttctctatctgctttctgccgtagggaagacattcgctgaagttattaaggtaggggaaatggtggaaaatggtatcaagtctggaaagattgtaagtcaggctgccttaaaatccacaacacaagtgcttcaaaatggttctggaaatattgagggaagaagagaagggaggatgtggccactattgtatcagcgcctaggactcatgttctaggtaattccccacaacactattttccttcccaagctccacaatattctatgccatacactccatatcatggttttaatgcacaaccaattgcacccccttcttatccaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="-" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11684" stop="10641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11384" g_stop="10941" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="-" ref_id="SGN-U342831" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11384" e_stop="10941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTTTCTTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCATCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGAAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAAGCCACAACACAAGTACTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGAATGTGTCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACAATG</genome_strand>
        <mrna_strand>GGAAAAATTTCATGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGTTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCTCTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGTATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAATCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATT-GAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGGTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346766" ref_strand="+" ref_description="SGN-U346766        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057665|gb|AAT39964.1| putative gag polyprotein [Solanum demissum] (evalue: 1e-36, score=156)">
      <seq>tatgataagtaatccactctttgtgtcaactgccccgactaacaacatcctgtagacaatgatggtgcccaaatccaacagcgatcctctgcccaaagttcggcttgatcacagttacactcttgaagaggccattaaaattccaagctctcatcccaacattcatcaatatggttaccctgtcaaaattgagaagatggtcaagaatgaggaacatgaagaaatgactaagaaaatgaagagttctgaacagagtataagagatatgaaaggaccaagaggccacaaaggcatctcgttcagtgacttgtgtatgtttccctcacgtccatttgcctgctggttttaaaattccaaagtttgaaaaatacgatggtcacggagacctcatagctcatctaaagatatattgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="-" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12311" stop="11297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12011" g_stop="11597" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="-" ref_id="SGN-U346766" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12011" e_stop="11597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAGCATCCCGCAGCCAACGATGGTGCCTAAATCCAACAGAGATCCTCCGTCCAAAGTTCGGCGTGATCAGAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCCACATTCATCAATATAGTTCCCCTGCCGAAATTGAGAGAATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTT-CCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATTGCTCATCTAAAGAGATATTGCAAC</genome_strand>
        <mrna_strand>TATGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAACATCCTGTAGACAATGATGGTGCCCAAATCCAACAGCGATCCTCTGCCCAAAGTTCGGCTTGATCACAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCAACATTCATCAATATGGTTACCCTGTCAAAATTGAGAAGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTCTGAACAGAGTATAAGAGATATGAAAGGACCAAGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCCTCACGTCCATTTGCCTGCTGGTTTTAAAATTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCTCATAGCTCATCTAAAGATATATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="+" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18794" stop="19765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19103" g_stop="19548" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="460" r_length="448" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19103" e_stop="19548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACAC--AAAAAAATTGTTT-AAATTTTTTTCTTTAAACTAAGTAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAGCGAAGTCAAAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-ATTTTTT-AAAAAAAATTACAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGAATAACGGTAAGGGCATATATAAACCACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG--AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="+" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22784" stop="24032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23084" g_stop="23732" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23084" e_stop="23732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGATCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTTTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="+" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23443" stop="24850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23743" g_stop="24550" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23743" e_stop="24550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATTTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAATGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325151" ref_strand="+" ref_description="SGN-U325151        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G46730.1 | Symbol: None | disease resistance protein (CC-NBS class), putative, domain signature CC-NBS exists, suggestive of a disease resistance protein. | chr3:17224054-17226597 REVERSE | Aliases: T6H20.240 (evalue: 1e-51, score=202) genbank/nr: gi|4050014|gb|AAC97933.1| disease resistance protein [Lycopersicon esculentum](evalue: 0, score=2183)">
      <seq>caatagcttcaacattatttctcaaacaaaggcttctctagctaaacttcagccactgtaaaggtcttgagaaaaagtagaatcatggaaaaacgaaaagataatgaagaagcaaacaactcattggtgctattttctgctcttagcaaggacattgccaatgttctaattttcctagagaatgaggaaaatcaaaaagctcttgacaaagatcaagttgaaaagataaaattgaaaatggcatttatttgtacatatgttcagctttcttattccgattttgagcagtttgaagatataatgactagaaaaagacaagaggttgagaatctgcttcaaccacttttggatgatgatgtccttactagcctcaccagtaatatggatgactgtatcagcttgtatcatcgttcttataaatcagatgccatcatgatggatgagcaattggacttcctcctcttgaatctctatcatctatccaagcatcacgctgaaaagatatttcctggagtgactcaatatgaagttcttcagaatatatgtggcaacataagagatttccatgggttgatactgaatggttgcattaagcatgagatggttgagaatgtcttacctctgtttcaactcatggctgaaagagtaggacacttcctttgggaggatcagactgatgaagactctcgactctccgagctagatgaggatgaacaaaatgatagagactctcgactcttcaagctaacacatctactcttgaagatcgttccaactgaactggaggttatacacatatgttatacaaacttgaaagcttcaacttcagcagaagttggacgcttcattaagaagctcctagaaacctcaccagatattctcagagaatatataattcaactacaagagcacatggtaactgttattacccctagcacttcaggggctcgaaacattcatgtcatgatggaattcctattacttattctttctgatatgcccaaggactttattcatcatgacaaactttttgatctcttggatcatgtcggaacacttaccagggaggtatcaactcttgtacgtgacttggaagagaaaccaaggaataaagagggtaataaccaaacaaattgtgcaaccctagacttgctggaaaatattgaactcctcaagaaagatctcaaacatgtttatctgaaagccccaaattcatctcaatgttgcttccccatgagtgatggaccactcttcatgcatcttctacacatacacttaaatgatttgctagattctaatgcttattcaattgctttgataaaggaagaaatcgagctggtgaagcaagaactgaaattcataagatcattctttggggatgctgctgagcaaggattgtataaagatatctgggcacgtgttctagatgtggcttatgaggcaaaagatgtcatagattcaattattgttcgagataatggtctcttacatcttattttctcacttcccattaccataaagaagatcaaacttatcaaagaagagatctctgctttagatgagaacattcccaaggacagaggtctaatcgttgtgaactctcccaagaaaccagttgagagaaagtcattgacaactgataaaataactgtaggttttgaggaggaaacaaacttgatacttagaaagctcaccagtggacccgcagatctagatgtcatttcgatcaccggtatgccgggttcaggtaaaactactttggcatacaaagtatacaatgataagtcagtttctagacatttcgaccttcgtgcatggtgcacggtcgaccaaggatatgacgacaagaagttgttgaatacaattttcagtcaagttagtgactcagattcaaaattgagtgagaatattgatgttgctgataaattacggaaacaactgtttggaaagaggtatcttattgtcttagatgacgtgtgggatactactacatgggatgagttaacaagaccttttcctgaagctaagaaaggaagtaggattattttgacaactcgagaaaaggaagtggctttgcatggaaagctgaacactgatcctcttgaccttcgattgctaagaccagatgaaagttgggaactattagagaaaaggacatttgggaatgagagttgccctgatgaactattagatgtcggtaaagaaatagccgaaaattgtaaagggcttcctttggtggctgatctgattgctggagtcattgctgggagggaaaagaaaaggagtgtgtggcttgaagttcaaagtagtttgagttcttttattttgaacagtgaagtggaagtgatgaaagttatagaattaagttatgaccatttaccacatcacctcaagccatgcttgctgcactttgcaagttggccgaaggacactccattgacaatctatgagttgaatgtttatttcggtgctgaaggatttgtggaaaagacggagatgaacagtatagaagaagtggtgaagatttatatggatgatttaatttacagtagcttggtaatttgtttcaatgagataggtgatacactgaatttccaaattcatgatcttgtgcatgacttttgtttgataaaagcaagaaaggaaaatttgtttgatcagataagatcaagtgctccatcagatttgttgcctcgtcaaattaccattgattatgatgaggaggaggagcactttgggcttaattttgtcatgttcgattcaaataagaaaaggcattctggtaaacacctctattctttgaggataaatggagaccagctggatgacagtgtttctgatgcatttcacctaagacacttgaggcttattagagtgttggacctgcaaacctctttaatcatggtgaaagattctttgctgaatgaaatatgcatgttgaatcatttgaggtacttaacaattcacacacaagttaaatatctgcctttctctttctcaaacctctggaatctagaaagcctgtttgtgtctaacaaaagatcaatcttggtactattaccgagaattttggatcttgtaaagttgcgagtgctgtccgtggatgcttgttctttctttgatatggatgcagatgaatcaatattgatagcaaaggacacaaagttagagaacttgagaatattaacggaactgttgatttcctattcgaaagatacaaagaatattttcaaaaggtttcccaatcttcaggtgcttcaatttgaactcaaggagtcatgggattattcaacagagcaacattggttcccgaaattggattgcctaactgaactagaaacactctctgtaggttttaaaagttcaaacacaaaccacagtgggtcctctgtagcgacaaatcggccgtgggattttcacttcccttcaaatttgaaaaaactgtggttgcatgaatttccgctgacatccgattcactatcaacaatagcgagactgcccaaccttgaaaagttgtccctttatcatacaatcatccagggagaagaatggaacatgggggaggaagacacctttgagaatctcaaatttttgaacttcaatcaactgactatttccaagtgggaggttggagaggaatccttccccaatcttgagaaattaaaactgcaggaatgtcataagctagaggagattccacctagttttggagatatttattcattgaaatctatcaaaattgtaaagagtcctcaacttgaagattctgctctcaaaattaagaaatacgctgaagatatgagaggagggaacgagcttcagatccttggccaaaagaatatccccttatttaagtagcattatggttgaaaagtagattgtactttgctgggtagattgtatatgattaagaaaattttgttgcagttatgaaatatttttgtggatttctcaaagtttctgcaacaaaaattataatttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="-" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75666" stop="44689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55370" g_stop="55369" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55368" i_stop="54724" i_length="645">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54723" g_stop="54662" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="63" r_length="61" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54661" i_stop="54102" i_length="560">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54101" g_stop="54039" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54038" i_stop="53964" i_length="75">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53963" g_stop="53319" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="786" r_length="660" r_score="0.921"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53318" i_stop="48095" i_length="5224">
            <donor d_prob="0.717" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48094" g_stop="45009" g_length="3086"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="3866" r_length="3080" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3984" polyA_stop="4003"/>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="-" ref_id="SGN-U325151" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>3858</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55370" e_stop="55369"/>
          <exon e_start="54723" e_stop="54662"/>
          <exon e_start="54101" e_stop="54039"/>
          <exon e_start="53963" e_stop="53319"/>
          <exon e_start="48094" e_stop="45009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAGTCATTCAACAGTAGCAAAGTACATAAATATTTAATTTTGCAGAAATAAAAGAAAAAGATCATAATTGTTTTTTGTTTTAAAATGAGGGTGTGTTTAGTATGAAGGAAAACATTTTTCGAAAAATATTTTCCAATTTTCTCATATTTGGTTGGGTCAAATATTTTCCAAATCAAATCATTTTCCTCAAATTTATGGAAAATGACCTCCATTCCAAACTTAAGGAAAACATTTTCCAAAACTCTTTTCTAACCTCCCCCTACCCACGCCATTCTACCAGTCCCCAACCCACCCCCTTCCAGCCCTCTACCCACCCACCCATACCCCTAAAAAGTTTAAGTTTAGTTTTTTAAAAATATTTTTAACATCACAATTTCATTTTTTTTTTCACCCCTACCCTCGACCCCCTACCACCCCCATCCCCAAAAAATAATTTAAGTTTGTTTTTAAAAAAATATTTGTAACTTCAAAAATTCAGTTTTTCTATTATTCTTCAGTTTTTCTATTAATTCTTCTATTCCGGTTGTATCTATATTTTTACTTTCTAATTTTTCTTTAAAGTTTTTATCTATCTTATTATTTAGTTGTAATAAAAGTGATATTATATTATTTTGTTGTATAATAATTTGATCTGATTTTGAAGATGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTACCTTTACCTTATAGACTTTTTGGCAGAAAAAAGTTAGACAGATACATTTGATGATGTTTACCATTCTCATTCTCTCTTTATTTTATTTTCTTTACATTCACACGCACAATAATTTTCTTGTAGGCTCCTTATATGCCATATACACATAGACGAATCTAGGATTTGATATTTACTAGTTTCTATGTCGACGTCATATTAATATCAATAATAATTAGATTGACAATCACATATTTATAATTATTAAGTCGATAACTTTCTTCTTTGTATAGGTTGGAAAAGTAATGGTAAACGAGCAGGACTCCTTTTTCTTTTTTTGTAAATAATTAACAGTTGTGAGATTTTATGTTTGTGACTTCATGTCATAAACATTTTTATGTGTGATTAAGATTGACATTTCCAATTGTGCGAGTCTAAAATTACTATATGTGAAAATAGTGATATTATTGATTATTCGTATCTTTTCATCTTCTTTCTCCTGTTAAAGTTTTAGCTACTTTTTATTCATCAGGTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAGCAAACAACTCATTGGTATGTTATTTTATAGAGTAAACTGTAAAGTATTGAATTATAGATATGTGGCTTTAAAATGTATTATTTTGGCAGGTGTTATTTTCTGCTCTTAGCAAGGACATTGCCGATGTTCTGGTTTTCCTAGAGAATGAGGAAAATCAAAAATCTCTTGACAAAGATGAAGTTGAAAATCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACGAGAAAAAGACAACAGGTTGAGAATCTGCTTCAATCACTTTTGGATGATGATGTCCTTACTAGCCTCACCAGTAATATGGATGACTGTATCAGCTTGTATCATCGTTCTTATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTCTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACCTAAGAGATTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGATGGTTGAGAATGTCTTACCTCTGTTTCAACTGATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATAAGACTGATG-A-A-----GA--CT-C--G---GATGAGGATGATCAGAATGATAGAGACTCTCGACTCTTCCAGCTAACACATCTACTCTTGAAGATTGTTCCAACTGAACTGGAGGTTATGCACATATGTTATACAAATTTGAAAGCTTCAACTTCAGCAGAAGTTGGACGCTTCATTAAGAAGCTCCTGGAAACCTCACCGGATATTCTCAGAGAATATATCATTCAACTACAAGAGCATATGATAACTGTTATTCGCCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGATGGAATTCCTATTACTTATTCTTTCTGATATGCCCAAGGACTTTATTCATCATGACAAACTTTTTGATCTCTTGGCTCATGTCGGAGTACTTACCAGGGAGGTATCAACTCTTGTACGTGACTTGGAAGAGAAATTAAGGAATAAAGAGGGTAATAACCAAACAAATTGTGCAACCCTAGACTTGCTGGAAAATATTGAACTCCTCAAGAAAGATCTCAAACATGTTTATCTGAAAGCCCCGGATTCATCTCAATGTTGCTTCCCCATGAGTGATGGACCACTCTTCATGCATCTTTTACACATGCACTTAAATGATTTGCTAGATTCTAATGCTTATTCAATTTCTTTGATAAAGGAAGAAATCGAGTTGGTGAAACAAGACCTGGAATTCATAAGATCATTCTTTGTGGATGCTGAGCAAGGATTGTATAAAGATATCTGGGCACGTGTCCTAGATGTGGCTTATGAGGCAAAAGATGTCATAGATTCAATTATTGTTCGAGATAATGGTCTCTTACATCTTATTTTCTCACTTCCCATTACCATAAAGAAGATCAAACTTATCAAAGAAGAGATCTCTGCTTTAGATGAGAGCATTCCCAAGGACAGAGGTCTAATCGCTGTGAACTCTCCCAAGAAACCAGTTGAGAGAAAGTCATTGACAACTAATAAAATAATTGTAGGTTTTGAGGAGGAGACGAACTTGATACTTAGAAAGCTCACCAGTGGACCGGCAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAGTCAGTTTCTAGCCATTTCGACCTTCGTGCATGGTGCACGGTCGACCAAGGATGTGATGAGAAGAAGTTGTTGAATAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATCTTGCTCAAATCTAGATTTAAATCGACTTTATAGTATCTAGATAGCCACCAAACAAGATTACAAAAATTAATTTTGAAGCATCAAATAATTTAAATATTATATATTCGCATCGGTTTTTGATGTTATCGGTTCGGTTTCGGTTAACCCAATAAGAAAATGTCGATCAAATAATATATAATAGTACGTATGTTATAATTACATGTTACCAACTTACCGCCAAAACATAATAGAAAACTTTGAATGTTGATTAAATTACTAACATTCACAAACTTGCAAAAGCTATCGCCTACAATTACGAACTAGAATTAAAACTAAAATAAAATATTTCAATGAGACAATCTTGAACAGTTGCTTGATCCACCGGATAATCAACAAAGTTCTCACTAATTCCCTAACAAAAAAATCATATAGCCTAAAAAGCTAATATTGAATCTATTTATGTATTAAATTATGTATATTTAATATTGAGGAAGGGTAAAGTAGTAAATAACTATCGTCTTATTGGGTTATCGGTGTACCCAATAATCCAATAGGAAAAACCGAAAACGACCCAATAACCCAATAATTATTTTTTCTAAACCCATTAAAAACCCAATAACCCAATAACAATAACCCGATAACAATTTATCGGTTCGATTTACTGGTCGATTTGGTTTTTGCACACCCCTACGCAGACGCGTTTTTCGACTTAACAATATCGCACTTACTATCATGGTTGTTGTTGAACTTAAAAGATATATTTATTTGACATATCCAACACCAAACCTTCAATGAAGAAGATATAGCTACAAGGGAAGCAGTAAGTTCAACGTCAAATTACAATAATTTTTCATTATGTTACATCCTTTTGAACAATTTTTGCTTCCCAGGAGTCAATTTGTGGAATAGATTGGAATGGTAAAGAGTTACTATCTAAAGGTTAAAAGAAATTTGATGAATGAGAAAAGATTTTTTGCTCTTGGGTTCATTATGCAGCTCACATTAACATACAAATTGGTAGTAAAATTGAGAATATACCCGGGGGCGGACTCACATGGTGTCCGCCGGGTGCTCGAGCACCCATTAACTTCGTTACGAAATATATATATATATCTATGTAAAAATTGATAGGTATTTATATAAAATTAACATAGAACACCCAATGAATAAATTATATAGTTGGCCCAATGGTTCTAGGATGGGTACTTAAGACTCTTTTAATGTTGTTGTACCAAGGTTTGAATCTCATTGTTAACACATATTTTTTATAGTTTCACTTCAGAGCACCCACAACCTTAAAATCTTAGATCCGCCACTGAATATACCCAGTTTGAGCGTATTTTGAATTGGAAGTTTTATTTAGAAAAATAATGGTAAAGAGTTACTATCTACATTGTTTGGCAGACCTCTCCAATTCGTTATATTTATTCGGCTACAATCAAGATAGATGAAGCTCAAATGACACTTCTAAGAACAGAACAATCTCTGCTAGATCGAGAATTTCTTTTTGGGAATCATTATATTATTAATCAAGAATTAATATAGGTTTTGTATTCTTCTCAAAAAACAATGTTGATAAAGCTCAGATTCCTTCTTTTAGAGTCACAACAACTTATATCACAATTTAGCACACAAAATAATAGGGCATCAAAATTATGCATTTTGAAACAATCTTCTTTATTAAATTTATTGACTTAAAAATAAATAGTAATAGATGAGATAATCAAAAAAACTTATATCAACCCCCTTAAGTACAAAAAGACTTGTACAATTACCAAATGAAGCTTGAGTAGTACAGTTGATTTAGCTCATAATCCATAAGCTTTGCACCATCATCAAGAGAAGAGTAGATTTGAAGAAGATGAATGAGAACTTTGTTGGGTTTAGCAAGCGTGAACGGGAAAAGAAAAGAAAGAATATGAAAAGAGAGAATATGAAAAGTGAGGGAACTATTTTGGAGGAAAAATGAAAAGTTAGTTGCAAAGTGCAAAGGAAAAGTCATTTCTCCCATATCAGCAAAAGATATGGAAATTGGTGTCCTTAGATAAGGAAACACTTCCTTTACTTCTTAAAGAGCTAAGAAGAAGGTACCCCCTCGCGCCGTCACCGTCGCTCGACCTTGACCTCGTTTTTGGATTTGGATTTGGCAAATGATGTGATTGATTGATAAATTTTTAGGATAAAATTTATTCAATCAATTTTTGTAATCAAATAAATCCTATTAATATTATCTCTTATAAATTAATGTAGAACGTTAGTTAATTAACAGAATTAATTTGTGGGTAACGGTAACATTTCAAAAAGTTTTTAATCTTTTCGAAAAGTCGTTACTTTCGGAAAAACCGTTATTTTTCTTACAGATACATTTTCCAAAAAGTTGTTATTTTTTCCAAAAGACACAACTTTCTGGATAAAACGGGTTTGAACAAATTTTTCTGAACAGACACGTTTCTTGCTGAAAATGGCTATAAAAGGAAGTCATTTTTTATTTTTTCAAACACTGAAATTTTCCTTCTCTGCATATATTTTTCTCTCAAAATCAAAGTGTCGATCGACTAAGTCTGTGTGACTTGTTATTCATAAGTTTGCTGAAGTTAAAGAAGCTTGAGGTACCACTATTTCTTTAACAGGATTAATCCGTTTTATCTTGGAGAAAATTAATTGGGAATTAAATTTCTGTTTATTGGCTAACTATATTTATAAATACAGGTTGTAACACTTTGTCTTTTAGGCCTTAGCAATTGTAAATTATATATGTAAGTAGAGGAAAGAGATCTAGAAGGATCTAGAACGGAAAGCAAAAGAAAGCTTGATTTGGTAAAATATCAATCATGCATAATTACCATTTTACCCTTGCATAATAATATACTTGCTAATTTGCCATTGGTCGTCCCTCACATGGCTCTTCTATATAGTATATCACATATTATTATAAGTGGGAAGCTCCAAAGTAAAAAGTTGAATGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTAGAGAGATTATTAATTTAATGACATTTTAGTTAACAGTTGTGAGATTTTATGTTTGTGATTTTATGTCATAAACATTTTGATGTGTGATTAAGATTGACATTTCCAATTGTGCGAGTCTAAAATTACTATGTGTGAAAATAGTGATATTATTGATTATTCTTATCTTTTCATCTTCTTTCTCCTGTTAAAGTTTTATCTACTTTTTATTCATCAGGTCTAGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAGCAAACAACTCATTGGTATGTTATTTTATAGAGTAAACCGTAAAGTATTGAATTATAGATATGTGGCTTTAAAATGTATTATTTTGGCAGGTGTTATTCTCTGCTCTTAACAAGGACATTGCCGATGTTCTGGTTTTCCTAGAGAATGAGGAAAATCAAAAATCTCTTGACAAAGATGAAGTTGAAAATCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAACTTTCTTATTCCAATTTTGAGCAGTTTGAAGATATAATGACGAGAAAAAGACAAGAGGTTGAGAATCTGCTTCAACCACTTTTGGATGATGATGTCCTTACTAGCCTCACTAGTAATATGGATGATTGTATCAGCTTGTATCATCGTTCTTATAAATCAGATGCCACCATGATGGATGAGCAATTGGACTTCCTCCTCTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGAAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACATAAGAGACTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGACGGTTGAGAATGTCTTACCTCTGTTTCAACTGATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATCAGATTGATGAAGACTCAGATGAGGATGATCAGAATGATAGAGACTCTCGACTCTTCCAGCTACTCTTGAAGATTGTTCCGACTGAAATGGAGGTTATGCACATATGTTATACAAACTTGAAAGCTTCAACTTCAGCAGAAGTTGGACGCTTCATTAAGAAGCTCCTGGAAACCTCACCGGATATTCTCAGAGAATATATCATTCAACTACAAGAGCATATGATAACTGTTATTCACCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGATGGAGTTCCTATTACTTATTCTTTCTGATATGCCCAAGGACTTTATTCATCATGACAAACTTTTTGATCTCTTGGCTCATGTCGGAGTACTTACCAGGGAGGTATCAACTCTTGTACGTGACTTGGAAGAGAAATTAAGGAATAAAGAGGGTAATAACCAAACAAATTGCGCAACCCTAGACTTGCTGGAAAATATTGAACTCCTCAAGAAAGATCTCAAACATGTTTATCTGAAAGCCCCAGATTCATCTCAATGTTGCTTCCCCATGAGTGATGGACCACTCTTCATGCATCTTCTACACATGCACTTAAATGATTTGCTAGATTCTAATGCTTATTCAATTGCTTTGATAAAGGAACAAATCGAGCTGGTGAAGCAAGACCTGGAATTCATAAGATCATTCTTTGTGGA---TGCTGAGCAAGGATTGTATAAAGATATCTGGGCACGTGTTCTAGATGTGGCTTATGAGGCAAAAGATGTCATAGATTCAATTATTGTTCGAGATAATGGTCTCTTACATCTTATTTTCTCACTTCCCATTACCATAAAGAAGATTAAACTTATCAAAGAAGAGATCTCTGCTTTAGATGAGAACATTCCCAAGGACAGAGGTCTAATCGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGAAAGTCATTGACAACTGATAAGATAATTGTAGGTTTTGAGGAGGAGACAAACTTGATACTTAGAAAGCTCACCAGTGGACCGGCAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAGTCAGTTTCTAGCCATTTCGACCTTCGTGCATGGTGCACGGTCGATCAAGGATGTGACGACAAGAAGTTGTTGGATACAATTTTCAGTCAAGTTAGTGACTCAGATTCAAAATTGAGTGAGAATATTGATGTTCCTGATAAGCTACGGAAACAACTGTATGGAAAGAGGTATCTTATTGTCTTAGATGACGTGTGGGATACTACTACATGGGATGAGTTGACAAGACCTTTTCCTGAAGCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGAGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGATCAGATGAAAGTTGGGAACTATTAGAGAAAAGGGCATTTGGGGACGAGAGTTGCCCTGATGAACTATTAGATGTCGGTAAAGAAATAGCCGAAAATTGTAAAGGGCTTCCTTTGGTGGCTGATCTGATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTCAAAGTAGTTTGAGTTCTTTTATTTTGAACAGTGAAGTGGAAGTGATGAAAGTTATAGAATTAAGTTATGACCATTTACTACATCACCTCAAGCCATGCTTGCTGTATTTTGCAAGTTTTCCGAAGGACACTTCATTGACAATCTATGAGTTGAGTATTTATTTGGGTGCTGAAGGATTTGTGGGAAATACGGAGATGAAGAGTATGGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTCCAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTGATGCACTGAATTTCCAAATTCATGATCTTGTGCATGACTTTTGTTTGATAAAAGCAAGAAAGGAAAAGTTGTTTGATCGGATACAATCAAGTACTCCATCAGATTTATTGCCACGTCAAATTAATTTTGTCTTTGATAAAAGCCAGAATGATCAGGAGCACTTTGGGCTTAATTTTGACCTGTTTAGTTCAAATAAGGAAAGACATTTTGGTAAACACATCTATTCTTTGAAAATAAATGAAGACCAGCTGGATGACAGTCTTTTTGATACATTTCACCTAAGACACTTGAGGCTTCTTAGAGTGTTGTTCCTGACTCTCTCTTTTATCATGGTGAACGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTAAGAATTGGGACACAAGTTAAATATCTGCCTTTGTCTTTGTCAAACCTCTGGAATCTAGAATTCTTGTGGCTTGAAAACAAAGAATCAACCTTGATACTATTACCGAGAATTTGGGATCTTGTAAAGCTGCGAGTGCTGTCCGTGGATGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATAGCAGAGGACACAAAGTTAGAGAACTTGAGAATGTTAGGGGAACTGTTTATTTTCTATTCGGAAGATACAGAGGATGTTTTCACAAGGTTTCCCAATCTTCAAGTGCTTTCATTTGAAATCGAGGAGTCATGGGATTATTCAACAGAGCAATATTGGTTCCCGAAATTGGATTGCCTAATTGAACTAGAAAAACTCAGTGTAAGTTTTGGAAGTTCAAACACAAACCACAGTGGGTCCTCTGTAGCGACAAATCAGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAACAACTGTTGTTGTGTGACTTTCCTCTGACATCCGATTCACTATCAACAATAGCTAGACTGCCCAACCTTGAAGAGTTGTCCCTTTATGATGTAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGG</genome_strand>
        <mrna_strand>CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAG-CTTCAACATTATTTCTCAAACAAAGGCTTCTCTAGCTAAACTTCAGCCACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAGCAAACAACTCATTG...........................................................................GTGCTATTTTCTGCTCTTAGCAAGGACATTGCCAATGTTCTAATTTTCCTAGAGAATGAGGAAAATCAAAAAGCTCTTGACAAAGATCAAGTTGAAAAGATAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACTAGAAAAAGACAAGAGGTTGAGAATCTGCTTCAACCACTTTTGGATGATGATGTCCTTACTAGCCTCACCAGTAATATGGATGACTGTATCAGCTTGTATCATCGTTCTTATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTCTTGAATCTCTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATATATGTGGCAACATAAGAGATTTCCATGGGTTGATACTGAATGGTTGCATTAAGCATGAGATGGTTGAGAATGTCTTACCTCTGTTTCAACTCATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATCAGACTGATGAAGACTCTCGACTCTCCGAGCTAGATGAGGATGAACAAAATGATAGAGACTCTCGACTCTTCAAGCTAACACATCTACTCTTGAAGATCGTTCCAACTGAACTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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TTCACTATCAACAATAGCGAGACTGCCCAACCTTGAAAAGTTGTCCCTTTATCATACAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTCAATCAACTGACTATTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGAATGTCATAAGCTAGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATCTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAAATTAAGAAATACGCTGAAGATATGAGAGGAGGGAACGAGCTTCAGATCCTTGGCCAAAAGAATATCCCCTTATTTAAGTAGCATTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325150" ref_strand="+" ref_description="SGN-U325150        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|4050014|gb|AAC97933.1| disease resistance protein [Lycopersicon esculentum](evalue: 5e-53, score=208)">
      <seq>atcatccagggagaagaatggaacatgggggaggaagacacctttgagaatctcaaatttttgaacttgcgtctaccgactctttccaagtgggaggttggagaggaatccttccccaatcttgagaaactaaaactgcaggaatgtggtaagcttgaggagattccacctagttttggagatatttattcattgaaatttatcgaaattgtaaatagtcctcaacttgaagattctgctctcaagattaaggaatacgctgaagagatgagaggagggagcgagcttcagatccttggccagaagaatatccccttatttaagtagcattatggttgaaaagtagattgtactttgcagggtacattgtatatgattaagaaaactttgttgcagttatgaaatatttttgtggatttctcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0112G05-yN2x9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0112G05.2" temp_strand="-" temp_description="C06HBa0112G05.2  AC211046.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0112G05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89633" stop="88609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89333" g_stop="88909" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="449"/>
      <MATCH_line gen_id="C06HBa0112G05.2" gen_strand="-" ref_id="SGN-U325150" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0112G05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89333" e_stop="88909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCATGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGAATGTGGTAAGTTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAAATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTAGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</genome_strand>
        <mrna_strand>ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAACTAAAACTGCAGGAATGTGGTAAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCGAAATTGTAAATAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTAGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11384" PGL_stop="10941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11384" e_stop="10941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="11384" e_stop="10941" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11384" stop="10941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATTTTCTTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCATCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGAAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAAGCCACAACACAAGTACTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGAATGTGTCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACAATG</gDNA_template>
            <first_frame> G  K  F  S  *  I  C  Y  Q  M  E  G  T  S  C  *  G  *  T  I  D  E  G  V  R  D  D  *  R  F  S  P  G  A  R  T  *  L  L  S  L  S  A  F  C  R  R  K  D  I  R  *  S  Y  *  G  R  G  N  G  G  K  W  H  Q  V  W  K  D  C  K  S  G  C  L  K  S  H  N  T  S  T  S  K  W  F  W  K  Y  W  R  E  E  E  K  G  E  C  V  H  Y  C  I  S  A  *  D  S  C  S  R  *  F  P  T  T  L  F  S  F  P  S  S  T  I  F  Y  A  I  H  S  I  S  C  F  *  C  T  T  N  C  T  P  F  L  S  T  M </first_frame>
            <second_frame>  E  N  F  L  E  Y  A  I  R  W  R  E  Q  A  A  R  V  K  P  S  M  K  E  S  E  M  I  D  V  F  L  Q  A  Q  E  P  D  Y  F  H  Y  L  L  S  A  V  G  K  T  F  A  E  V  I  K  V  G  E  M  V  E  N  G  I  K  S  G  K  I  V  S  Q  A  A  L  K  A  T  T  Q  V  L  Q  N  G  S  G  N  I  G  G  K  K  R  R  E  N  V  S  T  I  V  S  A  P  R  T  H  V  L  G  N  S  P  Q  H  Y  F  P  S  Q  A  P  Q  Y  S  M  P  Y  T  P  Y  H  V  F  N  A  Q  P  I  A  P  P  S  Y  P  Q   </second_frame>
            <third_frame>   K  I  F  L  N  M  L  S  D  G  G  N  K  L  L  G  L  N  H  R  *  R  S  Q  R  *  L  T  F  F  S  R  R  K  N  L  I  T  F  T  I  C  F  L  P  *  E  R  H  S  L  K  L  L  R  *  G  K  W  W  K  M  A  S  S  L  E  R  L  *  V  R  L  P  *  K  P  Q  H  K  Y  F  K  M  V  L  E  I  L  E  G  R  R  E  G  R  M  C  P  L  L  Y  Q  R  L  G  L  M  F  *  V  I  P  H  N  T  I  F  L  P  K  L  H  N  I  L  C  H  T  L  H  I  M  F  L  M  H  N  Q  L  H  P  L  L  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0112G05.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11383" stop="10943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFLEYAIRWREQAARVKPSMKESEMIDVFLQAQEPDYFHYLLSAVGKTFAEVIKVGEMVENGIKSGKIVSQAALKATTQVLQNGSGNIGGKKRRENVSTIVSAPRTHVLGNSPQHYFPSQAPQYSMPYTPYHVFNAQPIAPPSYPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12011" PGL_stop="11597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12011" e_stop="11597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="12011" e_stop="11597" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12011" stop="11597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAGCATCCCGCAGCCAACGATGGTGCCTAAATCCAACAGAGATCCTCCGTCCAAAGTTCGGCGTGATCAGAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCCACATTCATCAATATAGTTCCCCTGCCGAAATTGAGAGAATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATTGCTCATCTAAAGAGATATTGCAAC</gDNA_template>
            <first_frame> C  D  K  *  S  T  L  C  V  N  C  P  D  *  Q  H  P  A  A  N  D  G  A  *  I  Q  Q  R  S  S  V  Q  S  S  A  *  S  E  L  H  S  *  R  G  H  *  N  S  K  L  S  S  P  H  S  S  I  *  F  P  C  R  N  *  E  N  G  Q  E  *  G  T  *  R  N  D  *  E  N  E  E  F  G  T  E  Y  K  R  Y  A  R  T  R  R  P  Q  R  H  L  V  Q  *  L  V  Y  V  S  S  R  P  F  A  C  W  F  *  N  S  K  V  *  K  I  R  W  S  R  R  P  H  C  S  S  K  E  I  L  Q  </first_frame>
            <second_frame>  V  I  S  N  P  L  F  V  S  T  A  P  T  N  S  I  P  Q  P  T  M  V  P  K  S  N  R  D  P  P  S  K  V  R  R  D  Q  S  Y  T  L  E  E  A  I  K  I  P  S  S  H  P  H  I  H  Q  Y  S  S  P  A  E  I  E  R  M  V  K  N  E  E  H  E  E  M  T  K  K  M  K  S  L  E  Q  S  I  R  D  M  Q  G  L  G  G  H  K  G  I  S  F  S  D  L  C  M  F  P  H  V  H  L  P  A  G  F  K  T  P  K  F  E  K  Y  D  G  H  G  D  P  I  A  H  L  K  R  Y  C  N </second_frame>
            <third_frame>   *  *  V  I  H  S  L  C  Q  L  P  R  L  T  A  S  R  S  Q  R  W  C  L  N  P  T  E  I  L  R  P  K  F  G  V  I  R  V  T  L  L  K  R  P  L  K  F  Q  A  L  I  P  T  F  I  N  I  V  P  L  P  K  L  R  E  W  S  R  M  R  N  M  K  K  *  L  R  K  *  R  V  W  N  R  V  *  E  I  C  K  D  *  E  A  T  K  A  S  R  S  V  T  C  V  C  F  L  T  S  I  C  L  L  V  L  K  L  Q  S  L  K  N  T  M  V  T  E  T  P  L  L  I  *  R  D  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0112G05.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12010" stop="11597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISNPLFVSTAPTNSIPQPTMVPKSNRDPPSKVRRDQSYTLEEAIKIPSSHPHIHQYSSPAEIERMVKNEEHEEMTKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVHLPAGFKTPKFEKYDGHGDPIAHLKRYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19103" PGL_stop="19548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19103" e_stop="19548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="19103" e_stop="19548" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19103" stop="19548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAAAAAAATTGTTTAAATTTTTTTCTTTAAACTAAGTAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAGCGAAGTCAAAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTAAAAAAAATTACAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGAATAACGGTAAGGGCATATATAAACCACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> T  K  F  F  L  R  I  R  N  *  I  T  I  H  K  K  I  V  *  I  F  F  F  K  L  S  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  A  K  S  K  N  N  L  C  M  K  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  K  K  I  T  S  N  K  Y  K  F  K  T  N  F  L  T  F  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  N  N  G  K  G  I  Y  K  P  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  K  K  L  F  K  F  F  S  L  N  *  V  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  K  K  L  Q  V  I  N  I  N  L  K  L  I  F  *  L  S  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  *  I  T  V  R  A  Y  I  N  H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  K  N  C  L  N  F  F  L  *  T  K  *  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  S  E  V  K  K  *  F  M  Y  E  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  K  K  N  Y  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  E  *  R  *  G  H  I  *  T  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0112G05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23084" PGL_stop="23732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23084" e_stop="23732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="23084" e_stop="23732" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23084" stop="23732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGATCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTTTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  R  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  F  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  D  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  I  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0112G05.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23085" stop="23732"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIDQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23743" PGL_stop="24550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23743" e_stop="24550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="23743" e_stop="24550" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23743" stop="24550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATTTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAATGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  N  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  F  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  N  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  M  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0112G05.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23745" stop="24548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55370" PGL_stop="45009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55370" e_stop="55369"/>
            <exon e_start="54723" e_stop="54662"/>
            <exon e_start="54101" e_stop="54039"/>
            <exon e_start="53963" e_stop="53319"/>
            <exon e_start="48094" e_stop="45009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.714"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.000" e_score="0.921"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55370" e_stop="55369" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.948">
            <gDNA_intron_boundary i_start="55368" i_stop="54724" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="54723" e_stop="54662" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54661" i_stop="54102" i_length="560"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54101" e_stop="54039" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54038" i_stop="53964" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.921">
            <gDNA_exon_boundary e_start="53963" e_stop="53319" e_length="645"/>
          </exon>
          <intron i_serial="4" don_prob="0.717" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53318" i_stop="48095" i_length="5224"/>
          </intron>
          <exon e_serial="5" e_score="0.939">
            <gDNA_exon_boundary e_start="48094" e_stop="45009" e_length="3086"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55370" stop="55369"/>
              <exon start="54723" stop="54662"/>
              <exon start="54101" stop="54039"/>
              <exon start="53963" stop="53319"/>
              <exon start="48094" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CA : ATGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : GTCTTGAGAAAAAGTAGAATCATGGAAAAACGAAAAGATAATGAAGAAGCAAACAACTCATTG : GTGTTATTTTCTGCTCTTAGCAAGGACATTGCCGATGTTCTGGTTTTCCTAGAGAATGAGGAAAATCAAAAATCTCTTGACAAAGATGAAGTTGAAAATCTAAAATTGAAAATGGCATTTATTTGTACATATGTTCAGCTTTCTTATTCCGATTTTGAGCAGTTTGAAGATATAATGACGAGAAAAAGACAACAGGTTGAGAATCTGCTTCAATCACTTTTGGATGATGATGTCCTTACTAGCCTCACCAGTAATATGGATGACTGTATCAGCTTGTATCATCGTTCTTATAAATCAGATGCCATCATGATGGATGAGCAATTGGACTTCCTCCTCTTGAATCTGTATCATCTATCCAAGCATCACGCTGAAAAGATATTTCCTGGAGTGACTCAATATGAAGTTCTTCAGAATGTATGTGGCAACCTAAGAGATTTCCATGGGTTGATAGTGAATGGTTGCATTAAGCATGAGATGGTTGAGAATGTCTTACCTCTGTTTCAACTGATGGCTGAAAGAGTAGGACACTTCCTTTGGGAGGATAAGACTGATGAAGACTCGGATGAGGATGATCAGAATGATAGAGACTCTCGACTCTTCCAGCTAACACATCTACTCTTGAAGATTGTTCCAACTGAACTGGAG : GTTATGCACATATGTTATACAAACTTGAAAGCTTCAACTTCAGCAGAAGTTGGACGCTTCATTAAGAAGCTCCTGGAAACCTCACCGGATATTCTCAGAGAATATATCATTCAACTACAAGAGCATATGATAACTGTTATTCACCCTAGCACTTCAGGGGCTCGAAACATTCATGTCATGATGGAGTTCCTATTACTTATTCTTTCTGATATGCCCAAGGACTTTATTCATCATGACAAACTTTTTGATCTCTTGGCTCATGTCGGAGTACTTACCAGGGAGGTATCAACTCTTGTACGTGACTTGGAAGAGAAATTAAGGAATAAAGAGGGTAATAACCAAACAAATTGCGCAACCCTAGACTTGCTGGAAAATATTGAACTCCTCAAGAAAGATCTCAAACATGTTTATCTGAAAGCCCCAGATTCATCTCAATGTTGCTTCCCCATGAGTGATGGACCACTCTTCATGCATCTTCTACACATGCACTTAAATGATTTGCTAGATTCTAATGCTTATTCAATTGCTTTGATAAAGGAACAAATCGAGCTGGTGAAGCAAGACCTGGAATTCATAAGATCATTCTTTGTGGATGCTGAGCAAGGATTGTATAAAGATATCTGGGCACGTGTTCTAGATGTGGCTTATGAGGCAAAAGATGTCATAGATTCAATTATTGTTCGAGATAATGGTCTCTTACATCTTATTTTCTCACTTCCCATTACCATAAAGAAGATTAAACTTATCAAAGAAGAGATCTCTGCTTTAGATGAGAACATTCCCAAGGACAGAGGTCTAATCGTTGTGAACTCTCCCAAGAAACCAGTTGAGAGAAAGTCATTGACAACTGATAAGATAATTGTAGGTTTTGAGGAGGAGACAAACTTGATACTTAGAAAGCTCACCAGTGGACCGGCAGATCTAGATGTCATTTCGATCACTGGTATGCCGGGTTCAGGTAAAACTACTTTGGCATACAAAGTATACAATGATAAGTCAGTTTCTAGCCATTTCGACCTTCGTGCATGGTGCACGGTCGATCAAGGATGTGACGACAAGAAGTTGTTGGATACAATTTTCAGTCAAGTTAGTGACTCAGATTCAAAATTGAGTGAGAATATTGATGTTCCTGATAAGCTACGGAAACAACTGTATGGAAAGAGGTATCTTATTGTCTTAGATGACGTGTGGGATACTACTACATGGGATGAGTTGACAAGACCTTTTCCTGAAGCTAAGAAAGGAAGTAGGATTATTTTGACAACTCGAGAAAAGGAAGTGGCTTTGCATGGAAAGCTGAACACTGATCCTCTTGACCTTCGATTGCTAAGATCAGATGAAAGTTGGGAACTATTAGAGAAAAGGGCATTTGGGGACGAGAGTTGCCCTGATGAACTATTAGATGTCGGTAAAGAAATAGCCGAAAATTGTAAAGGGCTTCCTTTGGTGGCTGATCTGATTGCTGGAGTCATTGCTGGGAGGGAAAAGAAAAGGAGTGTGTGGCTTGAAGTTCAAAGTAGTTTGAGTTCTTTTATTTTGAACAGTGAAGTGGAAGTGATGAAAGTTATAGAATTAAGTTATGACCATTTACTACATCACCTCAAGCCATGCTTGCTGTATTTTGCAAGTTTTCCGAAGGACACTTCATTGACAATCTATGAGTTGAGTATTTATTTGGGTGCTGAAGGATTTGTGGGAAATACGGAGATGAAGAGTATGGAAGAAGTGGTGAAGATTTATATGGATGATTTAATTTCCAGTAGCTTGGTAATTTGTTTCAATGAGATAGGTGATGCACTGAATTTCCAAATTCATGATCTTGTGCATGACTTTTGTTTGATAAAAGCAAGAAAGGAAAAGTTGTTTGATCGGATACAATCAAGTACTCCATCAGATTTATTGCCACGTCAAATTAATTTTGTCTTTGATAAAAGCCAGAATGATCAGGAGCACTTTGGGCTTAATTTTGACCTGTTTAGTTCAAATAAGGAAAGACATTTTGGTAAACACATCTATTCTTTGAAAATAAATGAAGACCAGCTGGATGACAGTCTTTTTGATACATTTCACCTAAGACACTTGAGGCTTCTTAGAGTGTTGTTCCTGACTCTCTCTTTTATCATGGTGAACGATTCTTTGCTGAATGAAATATGCATGTTGAATCATTTGAGGTACTTAAGAATTGGGACACAAGTTAAATATCTGCCTTTGTCTTTGTCAAACCTCTGGAATCTAGAATTCTTGTGGCTTGAAAACAAAGAATCAACCTTGATACTATTACCGAGAATTTGGGATCTTGTAAAGCTGCGAGTGCTGTCCGTGGATGCTTGTTCTTTCTTTGATATGGATGCAGATGAATCAATATTGATAGCAGAGGACACAAAGTTAGAGAACTTGAGAATGTTAGGGGAACTGTTTATTTTCTATTCGGAAGATACAGAGGATGTTTTCACAAGGTTTCCCAATCTTCAAGTGCTTTCATTTGAAATCGAGGAGTCATGGGATTATTCAACAGAGCAATATTGGTTCCCGAAATTGGATTGCCTAATTGAACTAGAAAAACTCAGTGTAAGTTTTGGAAGTTCAAACACAAACCACAGTGGGTCCTCTGTAGCGACAAATCAGCCGTGGGATTTTCACTTCCCTTCAAATTTGAAACAACTGTTGTTGTGTGACTTTCCTCTGACATCCGATTCACTATCAACAATAGCTAGACTGCCCAACCTTGAAGAGTTGTCCCTTTATGATGTAATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGG</gDNA_template>
            <first_frame> Q :   W  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : C  L  E  K  K  *  N  H  G  K  T  K  R  *  *  R  S  K  Q  L  I   : G  V  I  F  C  S  *  Q  G  H  C  R  C  S  G  F  P  R  E  *  G  K  S  K  I  S  *  Q  R  *  S  *  K  S  K  I  E  N  G  I  Y  L  Y  I  C  S  A  F  L  F  R  F  *  A  V  *  R  Y  N  D  E  K  K  T  T  G  *  E  S  A  S  I  T  F  G  *  *  C  P  Y  *  P  H  Q  *  Y  G  *  L  Y  Q  L  V  S  S  F  L  *  I  R  C  H  H  D  G  *  A  I  G  L  P  P  L  E  S  V  S  S  I  Q  A  S  R  *  K  D  I  S  W  S  D  S  I  *  S  S  S  E  C  M  W  Q  P  K  R  F  P  W  V  D  S  E  W  L  H  *  A  *  D  G  *  E  C  L  T  S  V  S  T  D  G  *  K  S  R  T  L  P  L  G  G  *  D  *  *  R  L  G  *  G  *  S  E  *  *  R  L  S  T  L  P  A  N  T  S  T  L  E  D  C  S  N  *  T  G   : G  Y  A  H  M  L  Y  K  L  E  S  F  N  F  S  R  S  W  T  L  H  *  E  A  P  G  N  L  T  G  Y  S  Q  R  I  Y  H  S  T  T  R  A  Y  D  N  C  Y  S  P  *  H  F  R  G  S  K  H  S  C  H  D  G  V  P  I  T  Y  S  F  *  Y  A  Q  G  L  Y  S  S  *  Q  T  F  *  S  L  G  S  C  R  S  T  Y  Q  G  G  I  N  S  C  T  *  L  G  R  E  I  K  E  *  R  G  *  *  P  N  K  L  R  N  P  R  L  A  G  K  Y  *  T  P  Q  E  R  S  Q  T  C  L  S  E  S  P  R  F  I  S  M  L  L  P  H  E  *  W  T  T  L  H  A  S  S  T  H  A  L  K  *  F  A  R  F  *  C  L  F  N  C  F  D  K  G  T  N  R  A  G  E  A  R  P  G  I  H  K  I  I  L  C  G  C  *  A  R  I  V  *  R  Y  L  G  T  C  S  R  C  G  L  *  G  K  R  C  H  R  F  N  Y  C  S  R  *  W  S  L  T  S  Y  F  L  T  S  H  Y  H  K  E  D  *  T  Y  Q  R  R  D  L  C  F  R  *  E  H  S  Q  G  Q  R  S  N  R  C  E  L  S  Q  E  T  S  *  E  K  V  I  D  N  *  *  D  N  C  R  F  *  G  G  D  K  L  D  T  *  K  A  H  Q  W  T  G  R  S  R  C  H  F  D  H  W  Y  A  G  F  R  *  N  Y  F  G  I  Q  S  I  Q  *  *  V  S  F  *  P  F  R  P  S  C  M  V  H  G  R  S  R  M  *  R  Q  E  V  V  G  Y  N  F  Q  S  S  *  *  L  R  F  K  I  E  *  E  Y  *  C  S  *  *  A  T  E  T  T  V  W  K  E  V  S  Y  C  L  R  *  R  V  G  Y  Y  Y  M  G  *  V  D  K  T  F  S  *  S  *  E  R  K  *  D  Y  F  D  N  S  R  K  G  S  G  F  A  W  K  A  E  H  *  S  S  *  P  S  I  A  K  I  R  *  K  L  G  T  I  R  E  K  G  I  W  G  R  E  L  P  *  *  T  I  R  C  R  *  R  N  S  R  K  L  *  R  A  S  F  G  G  *  S  D  C  W  S  H  C  W  E  G  K  E  K  E  C  V  A  *  S  S  K  *  F  E  F  F  Y  F  E  Q  *  S  G  S  D  E  S  Y  R  I  K  L  *  P  F  T  T  S  P  Q  A  M  L  A  V  F  C  K  F  S  E  G  H  F  I  D  N  L  *  V  E  Y  L  F  G  C  *  R  I  C  G  K  Y  G  D  E  E  Y  G  R  S  G  E  D  L  Y  G  *  F  N  F  Q  *  L  G  N  L  F  Q  *  D  R  *  C  T  E  F  P  N  S  *  S  C  A  *  L  L  F  D  K  S  K  K  G  K  V  V  *  S  D  T  I  K  Y  S  I  R  F  I  A  T  S  N  *  F  C  L  *  *  K  P  E  *  S  G  A  L  W  A  *  F  *  P  V  *  F  K  *  G  K  T  F  W  *  T  H  L  F  F  E  N  K  *  R  P  A  G  *  Q  S  F  *  Y  I  S  P  K  T  L  E  A  S  *  S  V  V  P  D  S  L  F  Y  H  G  E  R  F  F  A  E  *  N  M  H  V  E  S  F  E  V  L  K  N  W  D  T  S  *  I  S  A  F  V  F  V  K  P  L  E  S  R  I  L  V  A  *  K  Q  R  I  N  L  D  T  I  T  E  N  L  G  S  C  K  A  A  S  A  V  R  G  C  L  F  F  L  *  Y  G  C  R  *  I  N  I  D  S  R  G  H  K  V  R  E  L  E  N  V  R  G  T  V  Y  F  L  F  G  R  Y  R  G  C  F  H  K  V  S  Q  S  S  S  A  F  I  *  N  R  G  V  M  G  L  F  N  R  A  I  L  V  P  E  I  G  L  P  N  *  T  R  K  T  Q  C  K  F  W  K  F  K  H  K  P  Q  W  V  L  C  S  D  K  S  A  V  G  F  S  L  P  F  K  F  E  T  T  V  V  V  *  L  S  S  D  I  R  F  T  I  N  N  S  *  T  A  Q  P  *  R  V  V  P  L  *  C  N  H  P  G  R  R  M  E  H  G  G  G  R  H  L  *  E  S  Q  I  F  E  L  A  S  T  D  S  F  Q  V  G  G  W  R  G  I  L  P  Q  S  *  E  I  K  T  A  G  M  W  *  A  *  G  D  S  T  *  F  W  R  Y  L  F  I  E  I  Y  Q  N  C  K  E  S  S  T  *  R  F  C  S  Q  D  *  G  I  R  *  R  D  E  R  R  G  R  A  S  D  P  W  P  E  E  Y  P  L  I  *  V  A  L  W </first_frame>
            <second_frame>   : N  G  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  V  L  R  K  S  R  I  M  E  K  R  K  D  N  E  E  A  N  N  S  L  :  V  L  F  S  A  L  S  K  D  I  A  D  V  L  V  F  L  E  N  E  E  N  Q  K  S  L  D  K  D  E  V  E  N  L  K  L  K  M  A  F  I  C  T  Y  V  Q  L  S  Y  S  D  F  E  Q  F  E  D  I  M  T  R  K  R  Q  Q  V  E  N  L  L  Q  S  L  L  D  D  D  V  L  T  S  L  T  S  N  M  D  D  C  I  S  L  Y  H  R  S  Y  K  S  D  A  I  M  M  D  E  Q  L  D  F  L  L  L  N  L  Y  H  L  S  K  H  H  A  E  K  I  F  P  G  V  T  Q  Y  E  V  L  Q  N  V  C  G  N  L  R  D  F  H  G  L  I  V  N  G  C  I  K  H  E  M  V  E  N  V  L  P  L  F  Q  L  M  A  E  R  V  G  H  F  L  W  E  D  K  T  D  E  D  S  D  E  D  D  Q  N  D  R  D  S  R  L  F  Q  L  T  H  L  L  L  K  I  V  P  T  E  L  E  :  V  M  H  I  C  Y  T  N  L  K  A  S  T  S  A  E  V  G  R  F  I  K  K  L  L  E  T  S  P  D  I  L  R  E  Y  I  I  Q  L  Q  E  H  M  I  T  V  I  H  P  S  T  S  G  A  R  N  I  H  V  M  M  E  F  L  L  L  I  L  S  D  M  P  K  D  F  I  H  H  D  K  L  F  D  L  L  A  H  V  G  V  L  T  R  E  V  S  T  L  V  R  D  L  E  E  K  L  R  N  K  E  G  N  N  Q  T  N  C  A  T  L  D  L  L  E  N  I  E  L  L  K  K  D  L  K  H  V  Y  L  K  A  P  D  S  S  Q  C  C  F  P  M  S  D  G  P  L  F  M  H  L  L  H  M  H  L  N  D  L  L  D  S  N  A  Y  S  I  A  L  I  K  E  Q  I  E  L  V  K  Q  D  L  E  F  I  R  S  F  F  V  D  A  E  Q  G  L  Y  K  D  I  W  A  R  V  L  D  V  A  Y  E  A  K  D  V  I  D  S  I  I  V  R  D  N  G  L  L  H  L  I  F  S  L  P  I  T  I  K  K  I  K  L  I  K  E  E  I  S  A  L  D  E  N  I  P  K  D  R  G  L  I  V  V  N  S  P  K  K  P  V  E  R  K  S  L  T  T  D  K  I  I  V  G  F  E  E  E  T  N  L  I  L  R  K  L  T  S  G  P  A  D  L  D  V  I  S  I  T  G  M  P  G  S  G  K  T  T  L  A  Y  K  V  Y  N  D  K  S  V  S  S  H  F  D  L  R  A  W  C  T  V  D  Q  G  C  D  D  K  K  L  L  D  T  I  F  S  Q  V  S  D  S  D  S  K  L  S  E  N  I  D  V  P  D  K  L  R  K  Q  L  Y  G  K  R  Y  L  I  V  L  D  D  V  W  D  T  T  T  W  D  E  L  T  R  P  F  P  E  A  K  K  G  S  R  I  I  L  T  T  R  E  K  E  V  A  L  H  G  K  L  N  T  D  P  L  D  L  R  L  L  R  S  D  E  S  W  E  L  L  E  K  R  A  F  G  D  E  S  C  P  D  E  L  L  D  V  G  K  E  I  A  E  N  C  K  G  L  P  L  V  A  D  L  I  A  G  V  I  A  G  R  E  K  K  R  S  V  W  L  E  V  Q  S  S  L  S  S  F  I  L  N  S  E  V  E  V  M  K  V  I  E  L  S  Y  D  H  L  L  H  H  L  K  P  C  L  L  Y  F  A  S  F  P  K  D  T  S  L  T  I  Y  E  L  S  I  Y  L  G  A  E  G  F  V  G  N  T  E  M  K  S  M  E  E  V  V  K  I  Y  M  D  D  L  I  S  S  S  L  V  I  C  F  N  E  I  G  D  A  L  N  F  Q  I  H  D  L  V  H  D  F  C  L  I  K  A  R  K  E  K  L  F  D  R  I  Q  S  S  T  P  S  D  L  L  P  R  Q  I  N  F  V  F  D  K  S  Q  N  D  Q  E  H  F  G  L  N  F  D  L  F  S  S  N  K  E  R  H  F  G  K  H  I  Y  S  L  K  I  N  E  D  Q  L  D  D  S  L  F  D  T  F  H  L  R  H  L  R  L  L  R  V  L  F  L  T  L  S  F  I  M  V  N  D  S  L  L  N  E  I  C  M  L  N  H  L  R  Y  L  R  I  G  T  Q  V  K  Y  L  P  L  S  L  S  N  L  W  N  L  E  F  L  W  L  E  N  K  E  S  T  L  I  L  L  P  R  I  W  D  L  V  K  L  R  V  L  S  V  D  A  C  S  F  F  D  M  D  A  D  E  S  I  L  I  A  E  D  T  K  L  E  N  L  R  M  L  G  E  L  F  I  F  Y  S  E  D  T  E  D  V  F  T  R  F  P  N  L  Q  V  L  S  F  E  I  E  E  S  W  D  Y  S  T  E  Q  Y  W  F  P  K  L  D  C  L  I  E  L  E  K  L  S  V  S  F  G  S  S  N  T  N  H  S  G  S  S  V  A  T  N  Q  P  W  D  F  H  F  P  S  N  L  K  Q  L  L  L  C  D  F  P  L  T  S  D  S  L  S  T  I  A  R  L  P  N  L  E  E  L  S  L  Y  D  V  I  I  Q  G  E  E  W  N  M  G  E  E  D  T  F  E  N  L  K  F  L  N  L  R  L  P  T  L  S  K  W  E  V  G  E  E  S  F  P  N  L  E  K  L  K  L  R  G  C  G  E  L  E  E  I  P  P  S  F  G  D  I  Y  S  L  K  F  I  K  I  V  K  S  P  Q  L  E  D  S  A  L  K  I  K  E  Y  A  E  E  M  R  G  G  G  E  L  Q  I  L  G  Q  K  N  I  P  L  F  K  *  H  Y   </second_frame>
            <third_frame>   :  M  D  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   S  *  E  K  V  E  S  W  K  N  E  K  I  M  K  K  Q  T  T  H  W :   C  Y  F  L  L  L  A  R  T  L  P  M  F  W  F  S  *  R  M  R  K  I  K  N  L  L  T  K  M  K  L  K  I  *  N  *  K  W  H  L  F  V  H  M  F  S  F  L  I  P  I  L  S  S  L  K  I  *  *  R  E  K  D  N  R  L  R  I  C  F  N  H  F  W  M  M  M  S  L  L  A  S  P  V  I  W  M  T  V  S  A  C  I  I  V  L  I  N  Q  M  P  S  *  W  M  S  N  W  T  S  S  S  *  I  C  I  I  Y  P  S  I  T  L  K  R  Y  F  L  E  *  L  N  M  K  F  F  R  M  Y  V  A  T  *  E  I  S  M  G  *  *  *  M  V  A  L  S  M  R  W  L  R  M  S  Y  L  C  F  N  *  W  L  K  E  *  D  T  S  F  G  R  I  R  L  M  K  T  R  M  R  M  I  R  M  I  E  T  L  D  S  S  S  *  H  I  Y  S  *  R  L  F  Q  L  N  W  R :   L  C  T  Y  V  I  Q  T  *  K  L  Q  L  Q  Q  K  L  D  A  S  L  R  S  S  W  K  P  H  R  I  F  S  E  N  I  S  F  N  Y  K  S  I  *  *  L  L  F  T  L  A  L  Q  G  L  E  T  F  M  S  *  W  S  S  Y  Y  L  F  F  L  I  C  P  R  T  L  F  I  M  T  N  F  L  I  S  W  L  M  S  E  Y  L  P  G  R  Y  Q  L  L  Y  V  T  W  K  R  N  *  G  I  K  R  V  I  T  K  Q  I  A  Q  P  *  T  C  W  K  I  L  N  S  S  R  K  I  S  N  M  F  I  *  K  P  Q  I  H  L  N  V  A  S  P  *  V  M  D  H  S  S  C  I  F  Y  T  C  T  *  M  I  C  *  I  L  M  L  I  Q  L  L  *  *  R  N  K  S  S  W  *  S  K  T  W  N  S  *  D  H  S  L  W  M  L  S  K  D  C  I  K  I  S  G  H  V  F  *  M  W  L  M  R  Q  K  M  S  *  I  Q  L  L  F  E  I  M  V  S  Y  I  L  F  S  H  F  P  L  P  *  R  R  L  N  L  S  K  K  R  S  L  L  *  M  R  T  F  P  R  T  E  V  *  S  L  *  T  L  P  R  N  Q  L  R  E  S  H  *  Q  L  I  R  *  L  *  V  L  R  R  R  Q  T  *  Y  L  E  S  S  P  V  D  R  Q  I  *  M  S  F  R  S  L  V  C  R  V  Q  V  K  L  L  W  H  T  K  Y  T  M  I  S  Q  F  L  A  I  S  T  F  V  H  G  A  R  S  I  K  D  V  T  T  R  S  C  W  I  Q  F  S  V  K  L  V  T  Q  I  Q  N  *  V  R  I  L  M  F  L  I  S  Y  G  N  N  C  M  E  R  G  I  L  L  S  *  M  T  C  G  I  L  L  H  G  M  S  *  Q  D  L  F  L  K  L  R  K  E  V  G  L  F  *  Q  L  E  K  R  K  W  L  C  M  E  S  *  T  L  I  L  L  T  F  D  C  *  D  Q  M  K  V  G  N  Y  *  R  K  G  H  L  G  T  R  V  A  L  M  N  Y  *  M  S  V  K  K  *  P  K  I  V  K  G  F  L  W  W  L  I  *  L  L  E  S  L  L  G  G  K  R  K  G  V  C  G  L  K  F  K  V  V  *  V  L  L  F  *  T  V  K  W  K  *  *  K  L  *  N  *  V  M  T  I  Y  Y  I  T  S  S  H  A  C  C  I  L  Q  V  F  R  R  T  L  H  *  Q  S  M  S  *  V  F  I  W  V  L  K  D  L  W  E  I  R  R  *  R  V  W  K  K  W  *  R  F  I  W  M  I  *  F  P  V  A  W  *  F  V  S  M  R  *  V  M  H  *  I  S  K  F  M  I  L  C  M  T  F  V  *  *  K  Q  E  R  K  S  C  L  I  G  Y  N  Q  V  L  H  Q  I  Y  C  H  V  K  L  I  L  S  L  I  K  A  R  M  I  R  S  T  L  G  L  I  L  T  C  L  V  Q  I  R  K  D  I  L  V  N  T  S  I  L  *  K  *  M  K  T  S  W  M  T  V  F  L  I  H  F  T  *  D  T  *  G  F  L  E  C  C  S  *  L  S  L  L  S  W  *  T  I  L  C  *  M  K  Y  A  C  *  I  I  *  G  T  *  E  L  G  H  K  L  N  I  C  L  C  L  C  Q  T  S  G  I  *  N  S  C  G  L  K  T  K  N  Q  P  *  Y  Y  Y  R  E  F  G  I  L  *  S  C  E  C  C  P  W  M  L  V  L  S  L  I  W  M  Q  M  N  Q  Y  *  *  Q  R  T  Q  S  *  R  T  *  E  C  *  G  N  C  L  F  S  I  R  K  I  Q  R  M  F  S  Q  G  F  P  I  F  K  C  F  H  L  K  S  R  S  H  G  I  I  Q  Q  S  N  I  G  S  R  N  W  I  A  *  L  N  *  K  N  S  V  *  V  L  E  V  Q  T  Q  T  T  V  G  P  L  *  R  Q  I  S  R  G  I  F  T  S  L  Q  I  *  N  N  C  C  C  V  T  F  L  *  H  P  I  H  Y  Q  Q  *  L  D  C  P  T  L  K  S  C  P  F  M  M  *  S  S  R  E  K  N  G  T  W  G  R  K  T  P  L  R  I  S  N  F  *  T  C  V  Y  R  L  F  P  S  G  R  L  E  R  N  P  S  P  I  L  R  N  *  N  C  G  D  V  V  S  L  R  R  F  H  L  V  L  E  I  F  I  H  *  N  L  S  K  L  *  R  V  L  N  L  K  I  L  L  S  R  L  R  N  T  L  K  R  *  E  E  G  A  S  F  R  S  L  A  R  R  I  S  P  Y  L  S  S  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0112G05.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55369" stop="54662"/>
                    <exon start="54101" stop="54039"/>
                    <exon start="53963" stop="53319"/>
                    <exon start="48094" stop="45017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3846</number_coding_nucleotides>
                  <number_encoded_amino_acids>1282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGLFFFFFFFFFFFFFFFFFFVLRKSRIMEKRKDNEEANNSLVLFSALSKDIADVLVFLENEENQKSLDKDEVENLKLKMAFICTYVQLSYSDFEQFEDIMTRKRQQVENLLQSLLDDDVLTSLTSNMDDCISLYHRSYKSDAIMMDEQLDFLLLNLYHLSKHHAEKIFPGVTQYEVLQNVCGNLRDFHGLIVNGCIKHEMVENVLPLFQLMAERVGHFLWEDKTDEDSDEDDQNDRDSRLFQLTHLLLKIVPTELEVMHICYTNLKASTSAEVGRFIKKLLETSPDILREYIIQLQEHMITVIHPSTSGARNIHVMMEFLLLILSDMPKDFIHHDKLFDLLAHVGVLTREVSTLVRDLEEKLRNKEGNNQTNCATLDLLENIELLKKDLKHVYLKAPDSSQCCFPMSDGPLFMHLLHMHLNDLLDSNAYSIALIKEQIELVKQDLEFIRSFFVDAEQGLYKDIWARVLDVAYEAKDVIDSIIVRDNGLLHLIFSLPITIKKIKLIKEEISALDENIPKDRGLIVVNSPKKPVERKSLTTDKIIVGFEEETNLILRKLTSGPADLDVISITGMPGSGKTTLAYKVYNDKSVSSHFDLRAWCTVDQGCDDKKLLDTIFSQVSDSDSKLSENIDVPDKLRKQLYGKRYLIVLDDVWDTTTWDELTRPFPEAKKGSRIILTTREKEVALHGKLNTDPLDLRLLRSDESWELLEKRAFGDESCPDELLDVGKEIAENCKGLPLVADLIAGVIAGREKKRSVWLEVQSSLSSFILNSEVEVMKVIELSYDHLLHHLKPCLLYFASFPKDTSLTIYELSIYLGAEGFVGNTEMKSMEEVVKIYMDDLISSSLVICFNEIGDALNFQIHDLVHDFCLIKARKEKLFDRIQSSTPSDLLPRQINFVFDKSQNDQEHFGLNFDLFSSNKERHFGKHIYSLKINEDQLDDSLFDTFHLRHLRLLRVLFLTLSFIMVNDSLLNEICMLNHLRYLRIGTQVKYLPLSLSNLWNLEFLWLENKESTLILLPRIWDLVKLRVLSVDACSFFDMDADESILIAEDTKLENLRMLGELFIFYSEDTEDVFTRFPNLQVLSFEIEESWDYSTEQYWFPKLDCLIELEKLSVSFGSSNTNHSGSSVATNQPWDFHFPSNLKQLLLCDFPLTSDSLSTIARLPNLEELSLYDVIIQGEEWNMGEEDTFENLKFLNLRLPTLSKWEVGEESFPNLEKLKLRGCGELEEIPPSFGDIYSLKFIKIVKSPQLEDSALKIKEYAEEMRGGGELQILGQKNIPLFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="89333" PGL_stop="88909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89333" e_stop="88909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="89333" e_stop="88909" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89333" stop="88909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATCCATGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTTTTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAATCTTGAGAAATTAAAACTGCAGGAATGTGGTAAGTTTGAGGAGATTCCACCTAGTTTTGGAGATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCTCTCAAGATTAAGGAATACGCTGAAGAAATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGCCAGAAGAATATCCCCTTATTTAAGTAGCATTATGGTTGAAAAGTAGATTGTACTTTGCAGGGTACATTGTATATGATTAAGAAAACTTTGTTGCAGTTATGAAATATTTTTGTGGATTTCTCAAA</gDNA_template>
            <first_frame> I  I  H  G  E  E  W  N  M  G  E  E  D  T  F  E  N  L  K  F  L  N  L  R  L  P  T  L  S  K  W  E  V  G  E  E  S  F  P  N  L  E  K  L  K  L  Q  E  C  G  K  F  E  E  I  P  P  S  F  G  D  I  Y  S  L  K  F  I  K  I  V  K  S  P  Q  L  E  D  S  A  L  K  I  K  E  Y  A  E  E  M  R  G  G  S  E  L  Q  I  L  G  Q  K  N  I  P  L  F  K  *  H  Y  G  *  K  V  D  C  T  L  Q  G  T  L  Y  M  I  K  K  T  L  L  Q  L  *  N  I  F  V  D  F  S   </first_frame>
            <second_frame>  S  S  M  E  K  N  G  T  W  G  R  K  T  P  L  R  I  S  N  F  *  T  C  V  Y  R  L  F  P  S  G  R  L  E  R  N  P  S  P  I  L  R  N  *  N  C  R  N  V  V  S  L  R  R  F  H  L  V  L  E  I  F  I  H  *  N  L  S  K  L  *  R  V  L  N  L  K  I  L  L  S  R  L  R  N  T  L  K  K  *  E  E  G  A  S  F  R  S  L  A  R  R  I  S  P  Y  L  S  S  I  M  V  E  K  *  I  V  L  C  R  V  H  C  I  *  L  R  K  L  C  C  S  Y  E  I  F  L  W  I  S  Q  </second_frame>
            <third_frame>   H  P  W  R  R  M  E  H  G  G  G  R  H  L  *  E  S  Q  I  F  E  L  A  S  T  D  S  F  Q  V  G  G  W  R  G  I  L  P  Q  S  *  E  I  K  T  A  G  M  W  *  V  *  G  D  S  T  *  F  W  R  Y  L  F  I  E  I  Y  Q  N  C  K  E  S  S  T  *  R  F  C  S  Q  D  *  G  I  R  *  R  N  E  R  R  E  R  A  S  D  P  W  P  E  E  Y  P  L  I  *  V  A  L  W  L  K  S  R  L  Y  F  A  G  Y  I  V  Y  D  *  E  N  F  V  A  V  M  K  Y  F  C  G  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0112G05.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89333" stop="89007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIHGEEWNMGEEDTFENLKFLNLRLPTLSKWEVGEESFPNLEKLKLQECGKFEEIPPSFGDIYSLKFIKIVKSPQLEDSALKIKEYAEEMRGGSELQILGQKNIPLFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 54456 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 7779 bytes was the average size of a spliced alignment
$ 12712 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1816 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:28:01
-->
