<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:18:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415824" ref_strand="-" ref_description="SGN-E415824 [STM-22-C11]">
      <seq>catataattttccctcccccgccgtgtttgattctcttagcaccttcttggcagcacacaaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctctagggttgtgtttaggattgacgggtattttccgtcgagtaccccggcggagttgaccaggatgttgaccggcgatttaaaagccgattctgctgcgtcgaagagggattttacttgatctggatcggagatattggctttgacggcaatggcgcgtggggaatcggaggtggaattgatctgggatacgacgtcatcggcttgagatgagttggaggaatagttgatgacgagtttagcaccaagtgaggccaaatgaagtgcaattgctttgccgattccgcgagaagagccggtaactatggctacacgatcttggagtgggaaagttgattgggctacgttttctgctgccattactgaagaaaaacactgaaattgctatggaagttttgtgatagacactgaagattgctggaatatatatgaagtttttgccatggaagccatggcgttgcaggtaggaaaatcacgtcactgctcaagtcactctgtatgtatattaatagagctctttagaaaatgtcttggaagttggaacaacaccactcagacctcatttttaaataaatgtactactcattcaggtgccaaaaaaaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2556" stop="1268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2256" g_stop="1572" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="714"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E415824" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415824" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2256" e_stop="1572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGACCGGCGATTGAAAAGCCGATTCAGCAGCGTCAAAGAGGGATTTCACTTGATCTGGATCTGAGATATTGGCCTTGACCGCAATGGCACGTGGGTAACCGGAGGTGGAATTGATCTGGGATACGACGTCGTCAGCTTGAGTGGAGTTGGAGGAATAGTTGATGACGAGTTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGATTCCGCGAGAAGAACCGGTAACAATGGCCACACGATCTTGGAGTGGGAAGGTTGATTGGGCTACGTTTTCTGCTGCCATTGCTGAAGAGAAAACACACTAATTGCTATGGAAGTTTTGTGAAAGACACTGCAAAATTGCTGAAATATATATGAAGTTTTTGCCACGGAAACCATGGCGTTGCAGGTAGGAAAATCACGTCACTGCTCAAGTCACTCTGTATG-GTATTAATAGAGTTCTTTTACTTCTTTTATAAAATATGTCTTGGAAGTTGGAACAACACCACTCACTCCTCATATTTAAAT</genome_strand>
        <mrna_strand>CATATAATTTTCCCTCCCCCGCCGTGTTTGATTCTCTTAGCACCTTCTTGGCAGCACACAAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTGACCAGGATGTTGACCGGCGATTTAAAAGCCGATTCTGCTGCGTCGAAGAGGGATTTTACTTGATCTGGATCGGAGATATTGGCTTTGACGGCAATGGCGCGTGGGGAATCGGAGGTGGAATTGATCTGGGATACGACGTCATCGGCTTGAGATGAGTTGGAGGAATAGTTGATGACGAGTTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGATTCCGCGAGAAGAGCCGGTAACTATGGCTACACGATCTTGGAGTGGGAAAGTTGATTGGGCTACGTTTTCTGCTGCCATTACTGAAGA-AAAACACTGAAATTGCTATGGAAGTTTTGTGATAGACACTG-AAGATTGCTGGAATATATATGAAGTTTTTGCCATGGAAGCCATGGCGTTGCAGGTAGGAAAATCACGTCACTGCTCAAGTCACTCTGTATGTATATTAATAGAG--------C-TC-TTTA-GAAA-ATGTCTTGGAAGTTGGAACAACACCACTCAGACCTCATTTTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415929" ref_strand="-" ref_description="SGN-E415929 [STM-22-O9]">
      <seq>atggcgcgtggggaatcggaggtggaattgatctgggatacgacgtcatcggcttgagatgagttggaggaatagttgatgacgagtttagcaccaagtgaggccaaatgaagtgcaattgctttgccgattccgcgagaagagccggtaactatggctacacgatcttggagtgggaaagttgattgggctacgttttctgctgccattactgaagaaaaacactgaaattgctatggaagttttgtgatagacactgaagattgctggaatatatatgaagtttttgccatggaagccatggcgttgcaggtaggaaaatcacgtcactgctcaagtcactctgtatgtatattaatagagctctttagaaaatgtcttggaagttggaacaacaccactcagacctcatttttaaataaatgtactactacttcaggtgccaaaaaaaaaaaaaaagaatnn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2304" stop="1268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2004" g_stop="1572" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="462"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E415929" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415929" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2004" e_stop="1572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCACGTGGGTAACCGGAGGTGGAATTGATCTGGGATACGACGTCGTCAGCTTGAGTGGAGTTGGAGGAATAGTTGATGACGAGTTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGATTCCGCGAGAAGAACCGGTAACAATGGCCACACGATCTTGGAGTGGGAAGGTTGATTGGGCTACGTTTTCTGCTGCCATTGCTGAAGAGAAAACACACTAATTGCTATGGAAGTTTTGTGAAAGACACTGCAAAATTGCTGAAATATATATGAAGTTTTTGCCACGGAAACCATGGCGTTGCAGGTAGGAAAATCACGTCACTGCTCAAGTCACTCTGTATG-GTATTAATAGAGTTCTTTTACTTCTTTTATAAAATATGTCTTGGAAGTTGGAACAACACCACTCACTCCTCATATTTAAAT</genome_strand>
        <mrna_strand>ATGGCGCGTGGGGAATCGGAGGTGGAATTGATCTGGGATACGACGTCATCGGCTTGAGATGAGTTGGAGGAATAGTTGATGACGAGTTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGATTCCGCGAGAAGAGCCGGTAACTATGGCTACACGATCTTGGAGTGGGAAAGTTGATTGGGCTACGTTTTCTGCTGCCATTACTGAAGA-AAAACACTGAAATTGCTATGGAAGTTTTGTGATAGACACTG-AAGATTGCTGGAATATATATGAAGTTTTTGCCATGGAAGCCATGGCGTTGCAGGTAGGAAAATCACGTCACTGCTCAAGTCACTCTGTATGTATATTAATAGAG--------C-TC-TTTA-GAAA-ATGTCTTGGAAGTTGGAACAACACCACTCAGACCTCATTTTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453752" ref_strand="+" ref_description="SGN-E453752 [cSTS-21-C5]">
      <seq>tcttcagtgtctctcacaaaacttccacagcaatttcagtgtttttcttcagtaatggcagcagaaaacgtagcccaatcaactttcccactccaagatcgtgtagccatagttaccggctcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactcctctcaagccgatgaacgtcgtatcccagatcaattccacctccgattccccacgcgccattgccgtcaaagccaatatctccgatccagaatcaagtaaaatccctcttcgacgcagcagaatcggcttttaaatcgccggtcaacatcctggtcaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagcttttgtgtgctgccaagaaggtgctaagagaatcaaacacggcgggggagggagaattatatgcctatcgacgtcgttagcagcggcgtttagacctggatacgggagcgtatatcgcttcaaaagcggccgtggaagcaatggtgaagatattggcgaaggaactgaaagggacaggaataacggtgaattctgtggcgccgggacccatagcgacggaaattgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1479" stop="2721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1741" g_stop="2421" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E453752" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1741" e_stop="2421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGTGTCTTTCACAAAACTTCCATAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACG-ACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAG-ATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATAC-GGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGG-AATTGTTCTA</genome_strand>
        <mrna_strand>TCTTCAGTGTCTCTCACAAAACTTCCACAGCAATTTCAGTGTTTT-TCTTCAGTAATGGCAGCAGAAAACGTAGCCCAATCAACTTTCCCACTCCAAGATCGTGTAGCCATAGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCTCTCAAGCCGATGAACGTCGTATCCCAGATCAATTCCACCTCCGATTCCCCACGCGCCATTGCCGTCAAAGCCAATATCTCCGATCCAGAATCAAGTAAAATCCCTCTTCGACGCAGCAGAATCGGCTTTTAAATCGCCGGTCAACATCCTGGTCAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTTGTGTGCTGCCAAGAAGGTGCTAAGAGAATCAAACACGGCGGGGGAGGGAGAATTATATGCCTATCGACGTCGTTAGCAGCGGCGTTTAGACCTGGATACGGGAGCGTATATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATATTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTCTGTGGCGCCGGGACCCATAGCGACGGAAATTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308266" ref_strand="+" ref_description="SGN-E308266 [cLEZ-6-K13]">
      <seq>tagcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1468" stop="2566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1768" g_stop="2266" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E308266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1768" e_stop="2266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</genome_strand>
        <mrna_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310038" ref_strand="+" ref_description="SGN-E310038 [cLEZ-8-I13]">
      <seq>tagcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1468" stop="2432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1768" g_stop="2132" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E310038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1768" e_stop="2132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGT</genome_strand>
        <mrna_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310993" ref_strand="+" ref_description="SGN-E310993 [cLEZ-17-I5]">
      <seq>gcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattgctgcaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctgagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgcttatagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1470" stop="2574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1770" g_stop="2274" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E310993" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1770" e_stop="2274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGC</genome_strand>
        <mrna_strand>GCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTGCTGCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTGAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTTATAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208591" ref_strand="+" ref_description="SGN-E208591 [cLEC-39-N8]">
      <seq>aattagtgtgttttctcttcagcaatggcagcagaaaacgtatcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1472" stop="2493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1772" g_stop="2193" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E208591" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1772" e_stop="2193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGC</genome_strand>
        <mrna_strand>AATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTATCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201289" ref_strand="+" ref_description="SGN-E201289 [cLEC-10-P17]">
      <seq>tgttttctcttcagcaatggcagcagagaacgtggcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacaccaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1480" stop="2450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1780" g_stop="2150" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E201289" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1780" e_stop="2150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACA-CAACCC</genome_strand>
        <mrna_strand>TGTTTTCTCTTCAGCAATGGCAGCAGAGAACGTGGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200725" ref_strand="+" ref_description="SGN-E200725 [cLEC-9-E7]">
      <seq>gttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcacatccagatcaagtgaaatccctctttgacgctgctgaatcggctatgcaatcgccggtcaacatgctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaatgtgctaagagaatcaaacacggtggaggatggaggattatatgcttatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1481" stop="2564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1781" g_stop="2264" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E200725" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1781" e_stop="2264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGA</genome_strand>
        <mrna_strand>GTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCACATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTATGCAATCGCCGGTCAACATGCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAATGTGCTAAGAGAATCAAACACGGTGGAGGATGGAGGATTATATGCTTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266190" ref_strand="+" ref_description="SGN-E266190 [cLEI-3-I19]">
      <seq>ttctcttcagcaatggcagcagaaaacgtagcccagtcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1484" stop="2606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1784" g_stop="2306" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E266190" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1784" e_stop="2306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACA</genome_strand>
        <mrna_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAGTCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266422" ref_strand="+" ref_description="SGN-E266422 [cLEI-3-L11]">
      <seq>ttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1484" stop="2590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1784" g_stop="2290" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E266422" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1784" e_stop="2290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCT</genome_strand>
        <mrna_strand>TTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268149" ref_strand="+" ref_description="SGN-E268149 [cLEI-15-K8]">
      <seq>tctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1485" stop="2613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1785" g_stop="2313" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E268149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1785" e_stop="2313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTC</genome_strand>
        <mrna_strand>TCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268147" ref_strand="+" ref_description="SGN-E268147 [cLEI-15-K4]">
      <seq>aatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcagcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtataccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactctacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1518" stop="2508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1818" g_stop="2208" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E268147" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1818" e_stop="2208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAA</genome_strand>
        <mrna_strand>AATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCAGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATACCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCTACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577538" ref_strand="+" ref_description="SGN-E577538 [60031]">
      <seq>atcgtgtagccatagttaccggctcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactcctctcaagccgatgacgtcgtatcccagatcaattccacctccgattccccacgcgccattgccgtcaaagccaatatctccgatccagatcaagtaaaatccctcttcgacgcagcagaatcggcttttaaatcgccggtcaacatcctggtcaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagcttttgtgtgctgccaagaaggtgctaagagaatcaaacacggcgggggagggagaattatatgcctatcgacgtcgttagcagcggcgtttagacctggatacggagcgtatatcgcttcaaaagcggccgtggaagcaatggtgaagatattggcgaaggaactgaaagggacaggaataacggtgaattctgtggcgccgggacccatagcgacggaattgttttacgaagggaaaacagaggcgatgataaagagggtgattgatgattgtccacatgggagacttggcctgccggaggatattgcgccggtggttgggtttttggccggcgacgcttctgaatgggttaatggacagattattcgtgtcaatggcggcttcatctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1539" stop="2886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1839" g_stop="2586" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E577538" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1839" e_stop="2586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATT</genome_strand>
        <mrna_strand>ATCGTGTAGCCATAGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCTCTCAAGCCGATGACGTCGTATCCCAGATCAATTCCACCTCCGATTCCCCACGCGCCATTGCCGTCAAAGCCAATATCTCCGATCCAGATCAAGTAAAATCCCTCTTCGACGCAGCAGAATCGGCTTTTAAATCGCCGGTCAACATCCTGGTCAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTTGTGTGCTGCCAAGAAGGTGCTAAGAGAATCAAACACGGCGGGGGAGGGAGAATTATATGCCTATCGACGTCGTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTATATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATATTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTCTGTGGCGCCGGGACCCATAGCGACGGAATTGTTTTACGAAGGGAAAACAGAGGCGATGATAAAGAGGGTGATTGATGATTGTCCACATGGGAGACTTGGCCTGCCGGAGGATATTGCGCCGGTGGTTGGGTTTTTGGCCGGCGACGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGCTTCATCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329119" ref_strand="+" ref_description="SGN-E329119 [cTOC-24-L14]">
      <seq>ggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttcaaaagcggccgtggaagcaatggtgaagatactggcgaaggaactgaaagggacaggaataacggtgaattgtgtggcgccgggacccatagcgacggaattgttctacgaagggaaaacagaggccatgataaagagggtgattgatgattgtccacatggaagacttggcctgccggaggatatcgcgccggtggttgggtttttggccggcgacacttctgaatggggttatggacagatcattcgtgtcaatggcggcttcatctaatttaattatttatttattttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1559" stop="2908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1859" g_stop="2608" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E329119" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1859" e_stop="2608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTATTTATTTATTTATTTTGCCA</genome_strand>
        <mrna_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGGTTATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTAATTATTTATTTATTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325725" ref_strand="+" ref_description="SGN-E325725 [cTOC-15-L1]">
      <seq>ggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1559" stop="2359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1859" g_stop="2059" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E325725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1859" e_stop="2059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCT</genome_strand>
        <mrna_strand>GGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482745" ref_strand="+" ref_description="SGN-E482745 [cSTE-5-O17]">
      <seq>aaaataattagatgaagccgccattgacacgaataatctgtccattaacccattcagaagcgtcgccggccaaaaacccaaccaccggcgcaatatcctccggcaggccaagtctcccatgtggacaatcatcaatcaccctctttatcatcgcctctgttttcccttcgtaaaacaattccgtcgctatgggtcccggcgccacagaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatatacgctccgtatccaggtctaaacgccgctgctaacgacgtcgataggcatataattttccctcccccgccgtgtttgattctcttagcaccttcttggcagcacacaaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctctagggttgtgtttaggattgacgggtattttccgtcgagtaccccggcggagttgaccaggatgttgaccggcgatttaaaagccgattctgctgcgtcgaagagggattttacttgatctggatcggagatattggctttgacggcaatggcgcgtggggaatcggaggtggaattgatctgggatacgacgtcatcggcttgagatgagttggaggaatagttgatgacgaagttagcaccaagtgaggccaaatgaagtgcaattgctttgccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2891" stop="1574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2591" g_stop="1874" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E482745" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2591" e_stop="1874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATTAGATGAAGCCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGAAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGACCGGCGATTGAAAAGCCGATTCAGCAGCGTCAAAGAGGGATTTCACTTGATCTGGATCTGAGATATTGGCCTTGACCGCAATGGCACGTGGGTAACCGGAGGTGGAATTGATCTGGGATACGACGTCGTCAGCTTGAGTGGAGTTGGAGGAATAGTTGATGACGAGTTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGAT</genome_strand>
        <mrna_strand>AAAATAATTAGATGAAGCCGCCATTGACACGAATAATCTGTCCATTAACCCATTCAGAAGCGTCGCCGGCCAAAAACCCAACCACCGGCGCAATATCCTCCGGCAGGCCAAGTCTCCCATGTGGACAATCATCAATCACCCTCTTTATCATCGCCTCTGTTTTCCCTTCGTAAAACAATTCCGTCGCTATGGGTCCCGGCGCCACAGAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATATACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAACGACGTCGATAGGCATATAATTTTCCCTCCCCCGCCGTGTTTGATTCTCTTAGCACCTTCTTGGCAGCACACAAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTGACCAGGATGTTGACCGGCGATTTAAAAGCCGATTCTGCTGCGTCGAAGAGGGATTTTACTTGATCTGGATCGGAGATATTGGCTTTGACGGCAATGGCGCGTGGGGAATCGGAGGTGGAATTGATCTGGGATACGACGTCATCGGCTTGAGATGAGTTGGAGGAATAGTTGATGACGAAGTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415928" ref_strand="+" ref_description="SGN-E415928 [STM-22-O9]">
      <seq>ggtaaaacaaaactcggcaaaaaaaataattagatgaagccgccattgacacgaataatctgtccattaacccattcagaagcgtcgccggccaaaaacccaaccaccggcgcaatatcctccggcaggccaagtctcccatgtggacaatcatcaatcaccctctttatcatcgcctctgttttcccttcgtaaaacaattccgtcgctatgggtcccggcgccacagaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatatacgctccgtatccaggtctaaacgccgctgctaacgacgtcgataggcatataattttccctcccccgccgtgtttgattctcttagcaccttcttggcagcacacaaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctctagggttgtgtttaggattgacgggtattttccgtcgagtaccccggcggagttaccaggatgttgaccggcgatttaaagccgattctgctgcgtcgaagagggattttacttgatctggatcggagatattggctttgacggcaatggcgcgtggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2898" stop="1690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2595" g_stop="1990" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="622" r_length="603" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E415928" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2595" e_stop="1990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATAAATTAGATGAAGCCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGAAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGACCGGCGATTGAAAAGCCGATTCAGCAGCGTCAAAGAGGGATTTCACTTGATCTGGATCTGAGATATTGGCCTTGACCGCAATGGCACGTGGGTAA</genome_strand>
        <mrna_strand>AAAAAAAT-AATTAGATGAAGCCGCCATTGACACGAATAATCTGTCCATTAACCCATTCAGAAGCGTCGCCGGCCAAAAACCCAACCACCGGCGCAATATCCTCCGGCAGGCCAAGTCTCCCATGTGGACAATCATCAATCACCCTCTTTATCATCGCCTCTGTTTTCCCTTCGTAAAACAATTCCGTCGCTATGGGTCCCGGCGCCACAGAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATATACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAACGACGTCGATAGGCATATAATTTTCCCTCCCCCGCCGTGTTTGATTCTCTTAGCACCTTCTTGGCAGCACACAAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAG-TTACCAGGATGTTGACCGGCGATT-TAAAGCCGATTCTGCTGCGTCGAAGAGGGATTTTACTTGATCTGGATCGGAGATATTGGCTTTGACGGCAATGGCGCGTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311729" ref_strand="+" ref_description="SGN-E311729 [cLEZ-9-G13]">
      <seq>tcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagcttacgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttcaaaagcggccgcggaagcaatggtgaagatactggcgaaggaactgaaagggacaggaataaccgtgaattgtgtggcgccgggacccatagcgacagaattgttctacgaagggaaaacagaggccatgataaagagggtgattgatgattgtccacatggaagacttggcctgccggaggatatcgcgccggtggttgggtttttggccggcgacacttctgaatgggttaatggacagatcattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1724" stop="2864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2024" g_stop="2564" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E311729" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2024" e_stop="2564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTG</genome_strand>
        <mrna_strand>TCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTACGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGCGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACCGTGAATTGTGTGGCGCCGGGACCCATAGCGACAGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415823" ref_strand="+" ref_description="SGN-E415823 [STM-22-C11]">
      <seq>ggtaaaacaaaactcggcaaaaaaaataattagatgaagccgccattgacacgaataatctgtccattaacccattcagaagcgtcgccggccaaaaacccaaccaccggcgcaatatcctccggcaggccaagtctcccatgtggacaatcatcaatcaccctctttatcatcgcctctgttttcccttcgtaaaacaattccgtcgctatgggtcccggcgccacagaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatatacgctccgtatccaggtctaaacgccgctgctaacgacgtcgataggcatataattttccctcccccgccgtgtttgattctcttagcaccttcttggcagcacacaaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctctagggttgtgtttaggattgacgggtattttccgtcgagtaccccggcggagttgaccaggatgttgaccggcgatttaaagccgattctgctgcgtcgaagaggattttacttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2898" stop="1732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2595" g_stop="2032" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="580" r_length="561" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E415823" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2595" e_stop="2032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATAAATTAGATGAAGCCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGAAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGACCGGCGATTGAAAAGCCGATTCAGCAGCGTCAAAGAGGGATTTCACTTGATCT</genome_strand>
        <mrna_strand>AAAAAAAT-AATTAGATGAAGCCGCCATTGACACGAATAATCTGTCCATTAACCCATTCAGAAGCGTCGCCGGCCAAAAACCCAACCACCGGCGCAATATCCTCCGGCAGGCCAAGTCTCCCATGTGGACAATCATCAATCACCCTCTTTATCATCGCCTCTGTTTTCCCTTCGTAAAACAATTCCGTCGCTATGGGTCCCGGCGCCACAGAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATATACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAACGACGTCGATAGGCATATAATTTTCCCTCCCCCGCCGTGTTTGATTCTCTTAGCACCTTCTTGGCAGCACACAAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTGACCAGGATGTTGACCGGCGATT-TAAAGCCGATTCTGCTGCGTCGAAGA-GGATTTTACTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336228" ref_strand="+" ref_description="SGN-E336228 [cTOE-10-L1]">
      <seq>aagtgtcgccggccaaaaacccaaccaccggcgcgatatcctccggcaggccaagtcttccatgtggacaatcatcaatcaccctctttatcatggcctctgttttcccttcgtagaacaattccgtcgctatgggtcccggcgccacacaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatgtacgctccgtatccaggtctaaacgccgctgctaaggacgtcgataagcatataatcctccctcctccaccgtgtttgattctcttagcaccttccttgcagcatacgaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctctagggttgtgtttaggattgacgggtattttccgtcgagtaccccggcggagtttaccaggatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2834" stop="1785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2534" g_stop="2085" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E336228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2534" e_stop="2085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGA</genome_strand>
        <mrna_strand>AAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437764" ref_strand="+" ref_description="SGN-E437764 [cSTA-4-P10]">
      <seq>ggtaaaacaaaactcggcaaaaaaaataattagatgaagccgccattgacgcgaataatctgtccattaacccattcagaagcgtcggcgggcaaaaacccaaccaccggcgcaatatcctccggcaggccaagtctcccatgtggacaatcatcaatcaccctctttatcatcgcctctgttttcccttcgtaaaacaattccgtcgctatgggtcccggcgccacagaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatatacgctccgtatccaggtctaaacgccgctgctaacgacgtcgataggcatataattttccctcccccgccgtgtttgattctcttagcaccttcttggcagcacacaaaagctccacgagcgttcacatcaaaagtcctgtcgaaatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2898" stop="1853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2595" g_stop="2153" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="461" r_length="442" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E437764" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2595" e_stop="2153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATAAATTAGATGAAGCCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGAAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTC</genome_strand>
        <mrna_strand>AAAAAAAT-AATTAGATGAAGCCGCCATTGACGCGAATAATCTGTCCATTAACCCATTCAGAAGCGTCGGCGGGCAAAAACCCAACCACCGGCGCAATATCCTCCGGCAGGCCAAGTCTCCCATGTGGACAATCATCAATCACCCTCTTTATCATCGCCTCTGTTTTCCCTTCGTAAAACAATTCCGTCGCTATGGGTCCCGGCGCCACAGAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATATACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAACGACGTCGATAGGCATATAATTTTCCCTCCCCCGCCGTGTTTGATTCTCTTAGCACCTTCTTGGCAGCACACAAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437965" ref_strand="+" ref_description="SGN-E437965 [cSTA-5-N11]">
      <seq>ggtaaaacaaaactcggcaaaaaaaataattagatgaagccgccattgacacgaataatctgtccattaacccattcagaagcgtcgccggccaaaaacccaaccaccggcgcaatatcctccggcaggccaagtctcccatgtggacaatcatcaatcaccctctttatcatcgcctctgttttcccttcgtaaaacaattccgtcgctatgggtcccggcgccacagaattcaccgttattcctgtccctttcagttccttcgccagtatcttcaccattgcttccacggccgcttttgaagcgatatacgctccgtatccaggtctaaacgccgctgctaacgacgtcgataggcatataattttccctcccccgccgtgtttgattctcttagcaccttcttggcagcacacaaaagctccacgagcgttcacatcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2898" stop="1869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2595" g_stop="2169" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="445" r_length="426" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E437965" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2595" e_stop="2169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATAAATTAGATGAAGCCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGAAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAG</genome_strand>
        <mrna_strand>AAAAAAAT-AATTAGATGAAGCCGCCATTGACACGAATAATCTGTCCATTAACCCATTCAGAAGCGTCGCCGGCCAAAAACCCAACCACCGGCGCAATATCCTCCGGCAGGCCAAGTCTCCCATGTGGACAATCATCAATCACCCTCTTTATCATCGCCTCTGTTTTCCCTTCGTAAAACAATTCCGTCGCTATGGGTCCCGGCGCCACAGAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATATACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAACGACGTCGATAGGCATATAATTTTCCCTCCCCCGCCGTGTTTGATTCTCTTAGCACCTTCTTGGCAGCACACAAAAGCTCCACGAGCGTTCACATCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623745" ref_strand="+" ref_description="SGN-E623745 [88841]">
      <seq>cttttgtgtgctgcaaggaaggtgctaagagaatcaaacacggcggagggagggagaattatatgcttatcgacgtcgttagcagcggcgtttagacctggatacggagcgtacatcgcttcaaaagcggcggtggaagcaatggtgaagatactggcgaaggaactgaaagggacaggaataacggtgaattctgtggcgccgggacccatagcgacggaattgttttacgaagggaaaacagaggcgatgataaagagggtgattgatgattgtccaaatgggagacttggcctgccggaggatattgcgccggtggttgggtttttggccggcgacgcttctgaatgggttaatggacagatcattcgtgtcaatggcggcttcatctaatttttttttttgccgagttttgttttacctgcagtttcgattgtgacatctatttgattttgtttcattttaccttattatataatataaaataataagtagtatacatatttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1893" stop="3006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2193" g_stop="2692" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="518"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E623745" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2193" e_stop="2692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGA-GGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTATTTATTTATTTATTTTGCCAAGAGTTTTGTTTTACCTGCAGTTTTCTATTGTGATATCTATTTGATTTTGTTTCATTTTCCCTTATTATATAATATAATATAAA</genome_strand>
        <mrna_strand>CTTTTGTGTGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGCGGAGGGAGGGAGAATTATATGCTTATCGACGTCGTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCGGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTCTGTGGCGCCGGGACCCATAGCGACGGAATTGTTTTACGAAGGGAAAACAGAGGCGATGATAAAGAGGGTGATTGATGATTGTCCAAATGGGAGACTTGGCCTGCCGGAGGATATTGCGCCGGTGGTTGGGTTTTTGGCCGGCGACGCTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCT-A---A--T-TTT-TTT-TTTTGCC--GAGTTTTGTTTTACCTGCAG-TTTCGATTGTGACATCTATTTGATTTTGTTTCATTTTACCTTATTATATAATATAAAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407526" ref_strand="+" ref_description="SGN-E407526 [PPI-7-J19]">
      <seq>cacaccagcacttttcggtgtctatccacaaaattccattttctagcaatttcagtgcttttcttcagtgataatggcggaagtaaacgtagctcaaggccaaaacctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctcttggagctaaactcgtcatcaactacacttccaactctactcaagccgacgacgtcgtatcccagatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtgtccgatccagatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccatcgatcctaaacacacccctggaggatttcgacaggactttcggtgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatccagcgcggaggaggggggaaggattatatgcttatcgtcgtcgatggcggtgggcgttgagccccgggttcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcaaaagaactgaaagggacaggaataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4825" stop="6076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5125" g_stop="5776" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E407526" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5125" e_stop="5776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCAGCACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGA-GGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGT-GGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAAC</genome_strand>
        <mrna_strand>CACACCAGCACTTTTCG-GTGTCTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATAATGGCGGAAGTAAACGTAGCTCAAGGCCAAAACCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTTGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCCGACGACGTCGTATCCCAGATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTGTCCGATCCAGATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCATCGATCCTAAACACACCCCTGGAGGATTTCGACAGGACTTTCGGTGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCCAGCGCGGAGGAGGGGGGAAGGATTATATGCTTATCGTCGTCGATGGCGGTGGGCGTTGAGCCCCGGGTTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCAAAAGAACTGAAAGGGACAGGAATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372805" ref_strand="+" ref_description="SGN-E372805 [TUS-32-B18]">
      <seq>cacttttcgtttgtttatccacaaaattccattttctagcaatttcagtgcttttcttcagtgatcatggcaggaaacaaacgtagcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4833" stop="6083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5133" g_stop="5783" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E372805" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5133" e_stop="5783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGC-GGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAAT</genome_strand>
        <mrna_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCAGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292414" ref_strand="+" ref_description="SGN-E292414 [cLET-1-N9]">
      <seq>cacttttcgtttgtttatccacaaaattccattttctagcaatttcagtgcttttcttcagtgatcatggcggaaacaaacgtagcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4833" stop="6070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5133" g_stop="5770" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E292414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5133" e_stop="5770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGG</genome_strand>
        <mrna_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407096" ref_strand="+" ref_description="SGN-E407096 [PPI-6-A7]">
      <seq>ccacaaaattccattttctagcaatttcagtgcttttcttcagtgataatggcggaagtaaacgtagctcaaggccaaaacctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctcttggagctaaactcgtcatcaactacacttccaactctactcaagccgacgacgtcgtatcccagatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtgtccgatccagatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccatcgatcctaaacacacccctggaggatttcgacaggactttcggtgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatccagcgcggaggagggggaaggattatatgcttatcgtcgtcgatggcggtggcgttgaggcccgggttcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcaaaagaactgaaagggacaggaataacggtgaattgtgcggcgccgggacccatagcgacggatatgttttacgaagggaaaacggangagatgataaagaaggcgattgatgaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4851" stop="6168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5151" g_stop="5868" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E407096" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5151" e_stop="5868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTC</genome_strand>
        <mrna_strand>CCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATAATGGCGGAAGTAAACGTAGCTCAAGGCCAAAACCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTTGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCCGACGACGTCGTATCCCAGATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTGTCCGATCCAGATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCATCGATCCTAAACACACCCCTGGAGGATTTCGACAGGACTTTCGGTGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCCAGCGCGGAGGAGGGGGAAGGATTATATGCTTATCGTCGTCGATGGCGGTGGCGTTGAGGCCCGGGTTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCAAAAGAACTGAAAGGGACAGGAATAACGGTGAATTGTGCGGCGCCGGGACCCATAGCGACGGATATGTTTTACGAAGGGAAAACGGANGAGATGATAAAGAAGGCGATTGATGAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422000" ref_strand="+" ref_description="SGN-E422000 [STM-33-N6]">
      <seq>ccacaaaattccattttctagcaatttcagtgcttttcttcagtgataatggcggaagtaaacgtagctcaaggccaaaacctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctcttggagctaaactcgtcatcaactacacttccaactctactcaagccgacgacgtcgtatcccagatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtgtccgatccagatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccatcgatcctaaacacacccctggaggatttcgacaggactttcggtgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatccagcgcggaggaaggggaaggattatatgcttatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4851" stop="5964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5151" g_stop="5664" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E422000" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5151" e_stop="5664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGT</genome_strand>
        <mrna_strand>CCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATAATGGCGGAAGTAAACGTAGCTCAAGGCCAAAACCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTTGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCCGACGACGTCGTATCCCAGATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTGTCCGATCCAGATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCATCGATCCTAAACACACCCCTGGAGGATTTCGACAGGACTTTCGGTGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCCAGCGCGGAGGAAGGGGAAGGATTATATGCTTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732033" ref_strand="+" ref_description="SGN-E732033 [LB01AD07]">
      <seq>gtatcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaattgtgcggcgccgggacccattgcaacggatatgttttacgaagggaaaacggaggagatgattaagaaggcgattgatgagtgtccacatggaaggcttggactgccggaggatgtggcgccggtggttgggtttttagccggcgatgcttctgaatggggtaatggacagattattcgtgtcaatggcggttatatttgatactagtatatgttcgttttatttcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4914" stop="6314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5214" g_stop="6014" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E732033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5214" e_stop="6014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTT</genome_strand>
        <mrna_strand>GTATCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGGTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614688" ref_strand="+" ref_description="SGN-E614688 [64478]">
      <seq>caattgctcttcacttggcctctcttggagctaaactcgtcatcaactacacttccaactcttctcaagccgacgacgtcgtatcccagatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctctttgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatccttaacacacccctggaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggagggggaaggattatatgcttatcgtcgtcgatggcggtggcgttgaggcccgggttcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaacaatactggcaaaagaactgaaagggacagggataacggtgaattgtgcggcgccgggacccatagcgacggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4984" stop="6116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5284" g_stop="5816" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E614688" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5284" e_stop="5816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAA-AATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATG</genome_strand>
        <mrna_strand>CAATTGCTCTTCACTTGGCCTCTCTTGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTTCTCAAGCCGACGACGTCGTATCCCAGATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTTGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTTAACACACCCCTGGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGGGGAAGGATTATATGCTTATCGTCGTCGATGGCGGTGGCGTTGAGGCCCGGGTTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAACAATACTGGCAAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATAGCGACGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372804" ref_strand="+" ref_description="SGN-E372804 [TUS-32-B18](-)">
      <seq>ccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaattgtgcggcgccgggacccattgcaacggatatgttttacgaagggaaaacggaggagatgattaagaaggcgattgatgagtgtccacatggaaggcttggactgccggaggatgtggcgccggtggttgggtttttagccggcgatgcttttgaatgggttaatggacagattattcgtgtcaatggcggttatatttgatactagtatatgttcgttttatttcgttttttatttggcatttcctttgaaatattgttataatcaatatttttaacctgaaataaggtaaaaatttaataatacaattcaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5125" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5425" g_stop="6110" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E372804" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5425" e_stop="6110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTAAATAATACAGTTCAATTTGAAGTCTAAAT</genome_strand>
        <mrna_strand>CCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTTTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTTAATAATACAATTCAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422001" ref_strand="+" ref_description="SGN-E422001 [STM-33-N6]">
      <seq>aaaaaaacaaaagtggtaaaccttatttcaggtataccacattgattataacaatatttcaaacgaaataccaaataaaaaacaaactaaatacgaaacaaaacgaacatatactagtatcaaatataaccgccattgacacgaatgatctgtccattaacccattcagacgtatcgccggctaaaaacccaaccaccggcgccacatcctccggcagtccaagccttccatgtggacattcatcaatcgccttctttatcatctcctccgttttcccttcgtaaaacatatccgtcgctatgggtcccggcgccgcacaattcaccgttattcctgtccctttcagttcttttgccagtattttcaccattgcttccacggccgcctttgacgccgcgtacgccccgaacccgggcctcaacgccaccgccatcgacgacgataagcatataatccttccccctcctccgcgctggattctattagcgccttctttgcagcatatgaaagctccacgcacgttcacaccgaaagtcctgtcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6321" stop="5257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6061" g_stop="5557" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="547" r_length="501" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E422001" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6061" e_stop="5557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAAATATTGATTATAACAATATTTCAAAGGAAATGCCAAATAAAAAACGAAATAAAACGAACATATACTAGTATCAAATATAACCGCCATTGACACGAATAATCTGTCCATTAACCCATTCAGAAGCATCGCCGGCTAAAAACCCAACCACCGGCGCCACATCCTCCGGCAGTCCAAGCCTTCCATGTGGACACTCATCAATCGCCTTCTTAATCATCTCCTCCGTTTTCCCTTCGTAAAACATATCCGTTGCAATGGGTCCCGGCGCCGCACAATTCACCGTTATCCCTGTCCCTTTCAGTTCTTTCGCCAGTATTTTCACCATTGCTTCCACGGCCGCCTTTGACGCCGCGTACGCCCCGAATCCGGGCCTCAACGCCACCGCCATCGACGACGTTAAGCATATAATCCTTCCGCCTCCTCCGCGCTTGATTCTATTAGCGCCTTCTTTGCAGCATATGAAAGCTCCACGCACGTTCACATCGAAAGTCCTGTCGAAAT</genome_strand>
        <mrna_strand>TATAACAATATT--TCA-AACGAAATACCAAATAAAA-AACAAACTAAATACGAAACAAAACGAACATATACTAGTATCAAATATAACCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGACGTATCGCCGGCTAAAAACCCAACCACCGGCGCCACATCCTCCGGCAGTCCAAGCCTTCCATGTGGACATTCATCAATCGCCTTCTTTATCATCTCCTCCGTTTTCCCTTCGTAAAACATATCCGTCGCTATGGGTCCCGGCGCCGCACAATTCACCGTTATTCCTGTCCCTTTCAGTTCTTTTGCCAGTATTTTCACCATTGCTTCCACGGCCGCCTTTGACGCCGCGTACGCCCCGAACCCGGGCCTCAACGCCACCGCCATCGACGACGATAAGCATATAATCCTTCCCCCTCCTCCGCGCTGGATTCTATTAGCGCCTTCTTTGCAGCATATGAAAGCTCCACGCACGTTCACACCGAAAGTCCTGTCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693835" ref_strand="+" ref_description="SGN-E693835 [LH_Ea02F17](-)">
      <seq>attgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcgatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctttggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaaatcttggttcatctttcctgctttcatgtcttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttcatggtttagcagcatctgatttttgtactgcttcaatcggattcattgattaaagaagtttggctttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12809" stop="11047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12589" g_stop="12578" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="195" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="374" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11346" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="821" r_length="447" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="837"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E693835" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12589" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTC-TATTCATTGATTAAAGAAGTTTGGCTTTTTT</genome_strand>
        <mrna_strand>ATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCGATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTTTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAAATCTTGGTTCATC-TTTCCTGCTTTCATGTCTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGATTTTTGTACTGCTTCAATCGGATTCATTGATTAAAGAAGTTTGGCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735341" ref_strand="+" ref_description="SGN-E735341 [LC01AE06]">
      <seq>cgagccctttttagttcccgcttgatatcatcaagttcttaatcacatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccacgaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12698" stop="11114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12408" g_stop="12315" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="271" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11410" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="654" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E735341" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12408" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGT</genome_strand>
        <mrna_strand>CGA-GCCCT-TTTTAGTTCCCGCTTGATATCATCAAGTTCTTAATCACATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCACGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739148" ref_strand="+" ref_description="SGN-E739148 [LC16BB12]">
      <seq>gctattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12700" stop="11114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12402" g_stop="12315" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="267" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11410" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="650" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E739148" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12402" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGT</genome_strand>
        <mrna_strand>GCTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740975" ref_strand="+" ref_description="SGN-E740975 [LC23CH03]">
      <seq>gtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12701" stop="11114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12401" g_stop="12315" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="266" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11410" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="649" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E740975" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12401" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGT</genome_strand>
        <mrna_strand>GTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747169" ref_strand="+" ref_description="SGN-E747169 [GI|9789538]">
      <seq>actctgttttggatttggtgggcgatttaccaatcttatttctggacccgagaaaaatcctatctttctttggaagagaggaaattgagcaagatgggggagaaacctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggagagcaaattcttgaaatttctggggtttatgtggaaccccctctcatgggttatggaagctgctgctattatggcaattgctcttgcaaatggaggaggaaagcctccggattggcaagattttgtgggtattattaccttgctagtgattaactcaacaattagttttattgaggagaataatgctggcaatgcagcagctgctctcatggctcgtctcgctcctaaagccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19029" stop="11116"/>
      </template>
    </gDNA_segment>
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      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E747169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
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      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747169" rDNA_strand="+"/>
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      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGTTTTGGATTTGGTGGGCGATTTACCAATCTTATTTCTGGACCCGAGAAAAATCCTATCTTTCTTTGGTGGGCAGTTGTTGCTTCTCTTCATACTCTTTTAACTCAGCTCAGTTATCTTGTTTTTTTCTTTAATGGGTGATTTTTTAGTAACTTATTGATATAATATAATAAAATTGTGTTGAATCTTGAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTT</genome_strand>
        <mrna_strand>ACTCTGTTTTGGATTTGGTGGGCGATTTACCAATCTTATTTCTGGACCCGAGAAAAATCCTATCTTTCTTTG................................................................................................................................GAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA......................................................................................GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616445" ref_strand="+" ref_description="SGN-E616445 [66255]">
      <seq>ctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctacttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtcttgactgccttatatatgttacaattgaccaagaatgaatattaagctatagcagcattcattatctataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12449" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12149" g_stop="12052" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11425" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="466" r_length="368" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E616445" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12149" e_stop="12052"/>
          <exon e_start="11792" e_stop="11425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAG</genome_strand>
        <mrna_strand>CTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTACTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTCTTGACTGCCTTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAGCAGCATTCATTATCTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714307" ref_strand="+" ref_description="SGN-E714307 [FB11AD02]">
      <seq>cagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcngttaaaagtgccttatatattttatacattttttttgctttgaattcttggntcatcttttcctgctttcatgtcttgactacattatatatattacaatttgaccagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13068" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="200" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="383" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="562" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11426" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="930" r_length="368" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E714307" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACA-TTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGA</genome_strand>
        <mrna_strand>CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCNGTTAAAAGTGCCTTATATATTTTATACATTTTTTTTGCTTTGAATTCTTGGNTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTTGACCAGAATGAATATTAAGCTATAACAGCATTCATTATCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734708" ref_strand="+" ref_description="SGN-E734708 [LB13BE09]">
      <seq>atcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcgtcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12677" stop="11126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12377" g_stop="12315" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="242" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11426" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="609" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="620"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E734708" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12377" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGA</genome_strand>
        <mrna_strand>ATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCGTCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605544" ref_strand="+" ref_description="SGN-E605544 [21467]">
      <seq>atctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctacttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtcttgactgccttatatatgttacaattgaccaagaatgaatattaagctatagcagcattcattatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12417" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12117" g_stop="12052" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11427" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="432" r_length="366" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E605544" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12117" e_stop="12052"/>
          <exon e_start="11792" e_stop="11427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAG</genome_strand>
        <mrna_strand>ATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTACTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTCTTGACTGCCTTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAGCAGCATTCATTATCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455164" ref_strand="+" ref_description="SGN-E455164 [cSTS-25-D13]">
      <seq>agttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaaacggagagctgaaattgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctatttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaatgtcttcagcgtttaaaagtgccttatatattntatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtgttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12770" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12470" g_stop="12315" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="335" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11430" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="698" r_length="363" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E455164" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12470" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTC</genome_strand>
        <mrna_strand>AGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAACGGAGAGCTGAAATTGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTATTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAATGTCTTCAGCGTTTAAAAGTGCCTTATATATTNTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTGTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572142" ref_strand="-" ref_description="SGN-E572142 [31248]">
      <seq>gagtgatctggctctacaaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctacttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtcttgactgcattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatctataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12724" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12424" g_stop="12315" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="290" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11432" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="651" r_length="361" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E572142" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572142" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12424" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATCTGGCTCTAC-AATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTC</genome_strand>
        <mrna_strand>GAGTGATCTGGCTCTACAAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTACTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTCTTGACTGCATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576384" ref_strand="-" ref_description="SGN-E576384 [59594]">
      <seq>cgtcttcgtacagagaacccaggatgccattgatactgctattgttgggatttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttccctttcaatccaactgacaagcgaacagcacttacgtatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagattctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggcttgcgctcacttggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctatttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaatgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtgttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatctataaggattttatttcatggtttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16619" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16319" g_stop="16252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="193" r_length="124" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15958" g_stop="15870" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="282" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15869" i_stop="11752" i_length="4118">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11751" g_stop="11436" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="598" r_length="316" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E576384" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576384" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16319" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15870"/>
          <exon e_start="11751" e_stop="11436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTC-TCGTACAGAGAA-CCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTT-CCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTAT</genome_strand>
        <mrna_strand>CGTCTTCGTACAGAGAACCCAGGATGCCATTGATACTGCTATTGTTGGGAT-TTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCCTTTCAATCCAACTGACAAGCGAACAGCACTTACGTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATTCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGCTTGCGCTCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTATTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAATGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTGTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464171" ref_strand="+" ref_description="SGN-E464171 [cPRO-17-O7]">
      <seq>gtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctatttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaatgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttgggttatcttttcctgctttcatggggtgactacattatatatgttaccattgacccagaatgaatatttagctattacagcattccttatctataaaggatttatttcctgggttccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12049" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11749" g_stop="11436" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E464171" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11749" e_stop="11436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTAT</genome_strand>
        <mrna_strand>GTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTATTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAATGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGGTTATCTTTTCCTGCTTTCATGGGGTGACTACATTATATATGTTACCATTGACCCAGAATGAATATTTAGCTATTACAGCATTCCTTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616852" ref_strand="+" ref_description="SGN-E616852 [90323]">
      <seq>ctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaaacggagagctgaaattgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctatttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaatgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtgttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12655" stop="11137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12355" g_stop="12315" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="220" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11437" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="576" r_length="356" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E616852" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12355" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTA</genome_strand>
        <mrna_strand>CTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAACGGAGAGCTGAAATTGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTATTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAATGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTGTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624129" ref_strand="+" ref_description="SGN-E624129 [GI|435002]">
      <seq>ctttggaagagaggaaattgagaaagatgggggagaaacctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggagagcaaattcttgaaatttctggggtttatgtggaatcctctctcatgggttatggaagctgctgctattatggcaattgctcttgcaaatggaggaggaaagcctccggattggcaagattttgtgggtattattaccttgcttgtgattaactcaacaattagttttattgaggagaacaatgctggcaatgcagcagctgctctcatggctcgtctcgctcctaaagccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacataatcagtattaaactgggagatattgttcctgcagatcgtcgtcttcttgaaggtgatccgctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaacaaaaggtcctggagatggtgtctactctggttccacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaaccaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttcaattgcagtggggatgataatagagattattgtgatgtaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacaatggcaattggttctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgataaaaaccttgttgaggtttttgccaaaggtgttgatgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgatactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgaacagcacttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagattctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggattgcgctcacttggtgtggcataccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctcctagacatgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtgttccctgagcacaaatatgagatagtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttaccgaacctggtcttagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttctcgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagaggcaagtttgactagtgctacttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtcttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatcggccgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18832" stop="11139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18662" g_stop="18658" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18657" i_stop="18530" i_length="128">
            <donor d_prob="0.506" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18529" g_stop="18455" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="80" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18454" i_stop="18360" i_length="95">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18359" g_stop="18240" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="200" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18239" i_stop="17871" i_length="369">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17870" g_stop="17772" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="299" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17771" i_stop="17686" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17685" g_stop="17548" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="437" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17547" i_stop="17402" i_length="146">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17401" g_stop="17267" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="572" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17266" i_stop="17177" i_length="90">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17176" g_stop="16997" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="752" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16996" i_stop="16901" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16900" g_stop="16694" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="959" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16574" g_stop="16455" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1079" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16454" i_stop="16372" i_length="83">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16371" g_stop="16252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1080" r_stop="1199" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1322" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1323" r_stop="1427" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1428" r_stop="1572" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1573" r_stop="1737" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1738" r_stop="1976" r_length="239" r_score="0.983"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1977" r_stop="2009" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="2010" r_stop="2091" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="2092" r_stop="2252" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="2253" r_stop="2438" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="2439" r_stop="2621" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="2622" r_stop="2800" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="21">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="22">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="2801" r_stop="3156" r_length="356" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E624129" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>3155</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18662" e_stop="18658"/>
          <exon e_start="18529" e_stop="18455"/>
          <exon e_start="18359" e_stop="18240"/>
          <exon e_start="17870" e_stop="17772"/>
          <exon e_start="17685" e_stop="17548"/>
          <exon e_start="17401" e_stop="17267"/>
          <exon e_start="17176" e_stop="16997"/>
          <exon e_start="16900" e_stop="16694"/>
          <exon e_start="16574" e_stop="16455"/>
          <exon e_start="16371" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTGGGCAGTTGTTGCTTCTCTTCATACTCTTTTAACTCAGCTCAGTTATCTTGTTTTTTTCTTTAATGGGTGATTTTTTAGTAACTTATTGATATAATATAATAAAATTGTGTTGAATCTTGAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGA-GCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTTTG................................................................................................................................GAAGAGAGGAAATTGAGAAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAATCCTCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA......................................................................................GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTTGTGATTAACTCAACAATTAGTTTTATTGAGGAGAACAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATAATCAGTATTAAACTGGGAGATATTGTTCCTGCAGATCGTCGTCTTCTTGAAGGTGATCCGCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACAAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCCACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAACCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCAATTGCAGTGGGGATGATAATAGAGATTATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACAATGGCAATTGGTTCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGATAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGATGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGATACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGAACAGCACTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATTCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGATTGCGCTCACTTGGTGTGGCATACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCTAGACATGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTGTTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACCGAACCTGGTCTTAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTCGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGGCAAGTTTGACTAGTGCTACTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366207" ref_strand="+" ref_description="SGN-E366207 [cLPT-1-K19](-)">
      <seq>agtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaattgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12702" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12402" g_stop="12315" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="267" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="620" r_length="353" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="639"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E366207" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12402" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>AGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATTGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGA--GTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740269" ref_strand="+" ref_description="SGN-E740269 [LC20DB01]">
      <seq>ctaccaatttcaatcgatttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12397" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12115" g_stop="12052" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E740269" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12115" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATCGATTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740297" ref_strand="+" ref_description="SGN-E740297 [LC20DD12]">
      <seq>ctaccaatttcaatgagtcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12415" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12115" g_stop="12052" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="420" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E740297" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12115" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAG-CTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGAGTCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740982" ref_strand="+" ref_description="SGN-E740982 [LC23DA01]">
      <seq>ctaccaatttcaatgatcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12415" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12115" g_stop="12052" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E740982" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12115" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGATCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737128" ref_strand="+" ref_description="SGN-E737128 [LC08CD02]">
      <seq>ctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12415" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12115" g_stop="12052" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E737128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12115" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738495" ref_strand="+" ref_description="SGN-E738495 [LC13DE04]">
      <seq>ctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12415" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12115" g_stop="12052" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11438" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="419" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E738495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12115" e_stop="12052"/>
          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417408" ref_strand="-" ref_description="SGN-E417408 [STM-25-K8]">
      <seq>gagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatgggagagcaagtttgactagtgctacttaaccggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaatgtcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggtttatcttttcctgctttcatgtcttgactgcattatatatgttacaattgaccaagaatgaatattaagcaataacagcattcatttctanaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12534" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12323" g_stop="12315" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="188" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11792" g_stop="11442" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="539" r_length="351" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E417408" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417408" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12323" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATT</genome_strand>
        <mrna_strand>GAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGGAGAGCAAGTTTGACTAGTGCTACTTAACCGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAATGTCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTTATCTTTTCCTGCTTTCATGTCTTGACTGCATTATATATGTTACAATTGACCAAGAATGAATATTAAGCAATAACAGCATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368178" ref_strand="+" ref_description="SGN-E368178 [TUS-22-M12]">
      <seq>ctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtataaaatatatctagatattttatacattgttgtgctttgaattctgggttcatcttttcctgcttttatgtattgactacattatatatattacaatggaccaagaatgaatattaagctatatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12439" stop="11149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12052" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11449" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="432" r_length="344" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E368178" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12052"/>
          <exon e_start="11792" e_stop="11449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGC</genome_strand>
        <mrna_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTATAAAATATATCTAGATATTTTATACATTGTTGTGCTTTGAATTCTGGGTTCATCTTTTCCTGCTTTTATGTATTGACTACATTATATATATTACAATGGACCAAGAATGAATATTAAGCTATATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614664" ref_strand="+" ref_description="SGN-E614664 [64454]">
      <seq>gctgttatagcttaatattcattcttggtcaattgtaacatatataatgtagtcaacacatgaaagcaggaaaagataaaccaagaattcaaagcaaaaaaatgtataaaatatataaggcacttttaaacgctgaagacattactactatgaacttgtcgctccagaggtaactcacacactcattatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11149" stop="11942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11449" g_stop="11642" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E614664" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11449" e_stop="11642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTATAGCTTAATATTCATTCTTGGTCAATTGTAATATATATAATGTAGTCAAGACATGAAAGCAGGAAAAGATGAACCAAGAATTCAAAGCAAAAAAATGTATAAAATATATAAGGCACTTTTAAACGCTGAAGATGTTACTACTATGAACTTGTCGCTCCAGAGGTAACTCACACACTCATTATGTCTT</genome_strand>
        <mrna_strand>GCTGTTATAGCTTAATATTCATTCTTGGTCAATTGTAACATATATAATGTAGTCAACACATGAAAGCAGGAAAAGATAAACCAAGAATTCAAAGCAAAAAAATGTATAAAATATATAAGGCACTTTTAAACGCTGAAGACATTACTACTATGAACTTGTCGCTCCAGAGGTAACTCACACACTCATTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734722" ref_strand="+" ref_description="SGN-E734722 [LB13BF11]">
      <seq>gcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgcttttgattcttggttcatcttttcctgctttcatgtcttgaatacattatatatattacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13030" stop="11179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12730" g_stop="12578" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="336" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="515" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11479" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="829" r_length="314" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E734722" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12730" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATT</genome_strand>
        <mrna_strand>GCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTTGATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGAATACATTATATATATTACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735041" ref_strand="+" ref_description="SGN-E735041 [LB14BB02]">
      <seq>cattacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatcatttttttgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13047" stop="11238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12747" g_stop="12578" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="353" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="532" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11538" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="786" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E735041" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12747" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTG</genome_strand>
        <mrna_strand>CATTACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTAT-CATTTTTTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240718" ref_strand="+" ref_description="SGN-E240718 [cLED-24-C11]">
      <seq>ctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12439" stop="11315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12052" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11615" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="266" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E240718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12052"/>
          <exon e_start="11792" e_stop="11615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTC</genome_strand>
        <mrna_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619942" ref_strand="+" ref_description="SGN-E619942 [70637]">
      <seq>gatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaaacggagagctgaaattgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttcgatgggagagcaagtttgactagtgctatttaaccggtgagtgggttgatagaatgacagacataatgaggtgtgtgagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13024" stop="11317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12724" g_stop="12578" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="330" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="509" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11617" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="689" r_length="180" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E619942" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12724" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTT-GATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGG-TGATAGAATGA-AGACATAATGA-GTGTGTGAGTTACC</genome_strand>
        <mrna_strand>GATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAACGGAGAGCTGAAATTGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTCGATGGGAGAGCAAGTTTGACTAGTGCTATTTAACCGGTGAGTGGGTTGATAGAATGACAGACATAATGAGGTGTGTGAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277360" ref_strand="+" ref_description="SGN-E277360 [cLER-3-O9]">
      <seq>gaaataggaagagaggaaattgagcaagatgggggagaaacctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18836" stop="11351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18536" g_stop="18455" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18454" i_stop="18360" i_length="95">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18359" g_stop="18240" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="202" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18239" i_stop="12210" i_length="6030">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12209" g_stop="12052" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="360" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11651" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="502" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E277360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18536" e_stop="18455"/>
          <exon e_start="18359" e_stop="18240"/>
          <exon e_start="12209" e_stop="12052"/>
          <exon e_start="11792" e_stop="11651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTG</genome_strand>
        <mrna_strand>GAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710758" ref_strand="+" ref_description="SGN-E710758 [FA56CE03]">
      <seq>cccctttgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggacagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggcgaagttgaagggtcttgacatagagacaattcaccagtcatacacctgtttgatgtgcgagcaactatgactactgctacttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12984" stop="11363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12690" g_stop="12578" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="296" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="475" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11663" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="606" r_length="131" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E710758" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12690" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACA-CTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACT</genome_strand>
        <mrna_strand>CCCCTTTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGACAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGCGAAGTTGAAGGGTCTTGACATAGAGACAATTCACCAGTCATACACCTGTTTGATGTGCGAGCAACTATGACTACTGCTACTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409796" ref_strand="+" ref_description="SGN-E409796 [PPI-15-G23]">
      <seq>cagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaaacggagagctgaaattgctaggcaacgtgagctgcacacacttaaaggtcacgtggaaatcagtggtgaagttgaagggtcttgacatagagacaattcagcaatcatacactgtttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13068" stop="11392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="200" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="383" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="562" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11692" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="664" r_length="102" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E409796" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGG-AATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTG</genome_strand>
        <mrna_strand>CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAACGGAGAGCTGAAATTGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAATCATACACTGTTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232831" ref_strand="+" ref_description="SGN-E232831 [cLED-8-G7]">
      <seq>tcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12971" stop="11392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12671" g_stop="12578" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="277" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="456" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11692" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="557" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E232831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12671" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTG</genome_strand>
        <mrna_strand>TCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455785" ref_strand="+" ref_description="SGN-E455785 [cSTS-27-G8]">
      <seq>gatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgggtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13584" stop="11454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13284" g_stop="13236" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="235" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="418" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="597" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11792" g_stop="11754" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="636" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E455785" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13284" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATC</genome_strand>
        <mrna_strand>GATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406337" ref_strand="+" ref_description="SGN-E406337 [PPI-3-B13]">
      <seq>ggattttcacctactggggttgttcttggtggccacttggcaatgacgacagtcattttcttttgggcagcatatgagaccagcttcttcccgcgggtacttggggtatcaacacttcagaggaacagcaacctgatgaccttcaggaaacttgcatcagcaatttaccttcaagtgagccaccatcagtcaggccctgatatttgtcacaagctctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13626" stop="11467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13327" g_stop="13236" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="283" r_length="190" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="466" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="645" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11792" g_stop="11767" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="671" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E406337" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13327" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCA-CTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGG-ACAGCAA-CTGATGA-CTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAG-CACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAG</genome_strand>
        <mrna_strand>GGATTTTCACCTACTGGGGTTGTTCTTGGTGGCCACTTGGCAATGACGACAGTCATTTTCTTTTGGGCAGCATATGAGACCAGCTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTACTTGGGGTATCAACACTTCAGAGGAACAGCAACCTGATGACCTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCCACCATCAGTCAGGCCCTGATATTTGTCACAAGCTCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407414" ref_strand="+" ref_description="SGN-E407414 [PPI-7-A22]">
      <seq>gtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgggtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaatctaccaatttcaatgagcttaatcagttagctgaggaaagcaagaggagagctgaaatcgctaggcaacgtgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13667" stop="11746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13367" g_stop="13236" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="318" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="501" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="680" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11792" g_stop="11780" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="693" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E407414" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13367" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTG</genome_strand>
        <mrna_strand>GTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAATCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAAGCAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208016" ref_strand="+" ref_description="SGN-E208016 [cLEC-34-I3]">
      <seq>ggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13590" stop="11792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13290" g_stop="13236" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="241" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="424" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12230" g_stop="12092" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="563" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E208016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13290" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATC</genome_strand>
        <mrna_strand>GGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242232" ref_strand="+" ref_description="SGN-E242232 [cLED-37-O18]">
      <seq>gccctgatatttgtcacaagatctacaagttggtcatttgttgagcgtcctgggttgttgcttgaggttgcttttctgattgctcaactgggtgccaccttgattgctgcttatgcaagctggagctttgctgcaatctaaggaattggctggggttgggcaggagtgatctggctctacaattcagtattttacttcccgcttgatatcatcaagttcttaatcagatatgctctcagaggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaacaatgatttcggaaaagaacaacgtgagcttcagtgggcccacgcacagaggacccttcatgggctgcaagttcctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12967" stop="11834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12667" g_stop="12578" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="273" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12134" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="370" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E242232" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12667" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACA</genome_strand>
        <mrna_strand>GCCCTGATATTTGTCACAAGATCTACAAGTTGGTCATTTGTTGAGCGTCCTGGGTTGTTGCTTGAGGTTGCTTTTCTGATTGCTCAACTG................................................................................GGTGCCACCTTGATTGCTGCTTATGCAAGCTGGAGCTTTGCTGCAATCTAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTCAGTATTTTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGAGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAACAATGATTTCGGAAAAGAACAACGTGAGCTTCAGTGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305015" ref_strand="+" ref_description="SGN-E305015 [cLEX-10-A14]">
      <seq>gtcattttctttcgggcagcatatgagacagatttcttcccgcgtgtattaggggtatcaacacttcagaggacagcaactgatgacttcaagaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaagccctgatatttgtcacaagatctcgaaattggtcgtttgttgagcgtcctggttagttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaagaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaacgattgctttcaccaggaagaaagatttcggaaaagaacaacgtgagctttaatgggccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13577" stop="11872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13277" g_stop="13236" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="228" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="411" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12230" g_stop="12172" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="470" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E305015" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13277" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCA</genome_strand>
        <mrna_strand>GTCATTTTCTTTCGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTAGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAAGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAAGCCCTGATATTTGTCACAAGATCTCGAAATTGGTCGTTTGTTGAGCGTCCTGGTTAGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAAGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAACG....................................................................................ATTGCTTTCACCAGGAAGAAAGATTTCGGAAAAGAACAACGTGAGCTTTAATGGGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589320" ref_strand="+" ref_description="SGN-E589320 [42892]">
      <seq>aaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgatggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgggtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatctggtncttgagcaaaggattgctttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14490" stop="12010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14380" g_stop="14369" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="45" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="127" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="288" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="474" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="657" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12230" g_stop="12219" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="669" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E589320" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14380" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACC</genome_strand>
        <mrna_strand>AAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTGGTNCTTGAGCAAAGG....................................................................................ATTGCTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248550" ref_strand="+" ref_description="SGN-E248550 [cLEF-59-H24]">
      <seq>tgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13703" stop="12010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="178" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="364" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="547" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12230" g_stop="12219" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="559" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E248550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACC</genome_strand>
        <mrna_strand>GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289247" ref_strand="+" ref_description="SGN-E289247 [cLES-18-C12]">
      <seq>tggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12917" stop="12010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12617" g_stop="12578" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="223" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12221" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="233" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E289247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12617" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCA</genome_strand>
        <mrna_strand>TGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331428" ref_strand="+" ref_description="SGN-E331428 [cTOD-9-B24]">
      <seq>aagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggccctggatcttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14329" stop="12025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14029" g_stop="13978" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="213" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="399" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12497" g_stop="12325" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="572" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E331428" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14029" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCT</genome_strand>
        <mrna_strand>AAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCCTGGATCTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564656" ref_strand="+" ref_description="SGN-E564656 [2905]">
      <seq>acctctgcctgatagttggaagctggctgagatttcactactggggttgttcttgggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaaagggcctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13655" stop="12033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13356" g_stop="13236" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="307" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12497" g_stop="12333" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="473" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E564656" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13356" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTT-GGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGG-AAGGGCCTGGGAT</genome_strand>
        <mrna_strand>ACCTCTGCCTGATAGTTGGAAGCTGGCTGAGA-TTTCACTACTGGGGTTGTTCTTGGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAAGGGCCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727294" ref_strand="+" ref_description="SGN-E727294 [LA14BB07]">
      <seq>tgtgatagctgttgatgatgccactgatgctgctcgaattgcttctgacattgatcttactgaacctggtctcactgtcatcattaatgctgttctgactactcgagcaatctttcaaaggatgaaaaactatacaatatatgctgtttccatcacaatccgaattgggcttggttatatgcttctggcccttatctggaaatttgactttccacctttcatggcgcttatcattgcaatcctcgatgacggtaccattatgacaatatcataggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacaatcattttcttttgggcagcatatgagacatatttcttcccacgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgaacactatcactcaggccctgatatttgtcacaaaatctcgaagttggtcatttgttgagcgtcctggtttgttgcttgcggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaagagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcacatatgctctcaatggaacggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14804" stop="12038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14504" g_stop="14369" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="169" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="251" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="412" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="598" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12497" g_stop="12338" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="758" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E727294" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14504" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCT</genome_strand>
        <mrna_strand>TGTGATAGCTGTTGATGATGCCACTGATGCTGCTCGAATTGCTTCTGACATTGATCTTACTGAACCTGGTCTCACTGTCATCATTAATGCTGTTCTGACTACTCGAGCAATCTTTCAAAGGATGAAAAACTATACA..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGAATTGGG..........................................................................................CTTGGTTATATGCTTCTGGCCCTTATCTGGAAATTTGACTTTCCACCTTTCATGGCGCTTATCATTGCAATCCTCGATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCATAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAATCATTTTCTTTTGGGCAGCATATGAGACATATTTCTTCCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAACACTATCACTCAGGCCCTGATATTTGTCACAAAATCTCGAAGTTGGTCATTTGTTGAGCGTCCTGGTTTGTTGCTTGCGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAAGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCACATATGCTCTCAATGGAACGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710392" ref_strand="+" ref_description="SGN-E710392 [FA55BB08]">
      <seq>ccattgctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14812" stop="12052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14517" g_stop="14369" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="182" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="264" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="425" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="611" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12497" g_stop="12352" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="757" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E710392" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14517" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCT</genome_strand>
        <mrna_strand>CCATTGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487639" ref_strand="+" ref_description="SGN-E487639 [cSTE-26-M7]">
      <seq>ttctgactagtcgagcaatctttcaaaggatgaaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgatggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctatttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacnatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14712" stop="12052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14412" g_stop="14369" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="77" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="159" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="320" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="506" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12497" g_stop="12352" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="652" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E487639" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14412" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCT</genome_strand>
        <mrna_strand>TTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTATTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACNATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689995" ref_strand="+" ref_description="SGN-E689995 [LH_Ea02F17]">
      <seq>cgcttgatctgactaatcgagcaatctttcaaaggatgaaaaactacacgatatatgactgtttccatcacaatccgtattgtgcttggatttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatccacaatgacggtaccattatgacaatatcaaaggatacggtcaaaccatctcctctgcctgataattggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcatcatatgacacacatttcttcccgcgtgaatgtggggtatcaacacttcaaagaacagcaactgatgacttcaagaaacttgcatcatcaattgaccttcaagtgagcactatcactcatgccctgatatttgtcacaacatctcgaagttggtcatttgttgagcgtcctggattgttgcttgaggatgcttttctgatagctcaactggttgccaccttcattgctgcttatgccagttggagctttgctgcgatctaacgaattgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14716" stop="12136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14417" g_stop="14369" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.88"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="84" r_length="34" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="166" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="327" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="513" r_length="186" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12497" g_stop="12436" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="575" r_length="62" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E689995" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14417" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCT-GTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATG-CTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTG</genome_strand>
        <mrna_strand>CGCTTGATCTGACTAATCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGACTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGATTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCACAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATACGGTCAAACCATCTCCTCTGCCTGATAATTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCATCATATGACACACATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAATGTGGGGTATCAACACTTCAAAGAACAGCAACTGATGACTTCAAGAAACTTGCATCATCAATTGACCTTCAAGTGAGCACTATCACTCATGCCCTGATATTTGTCACAACATCTCGAAGTTGGTCATTTGTTGAGCGTCCTGGATTGTTGCTTGAGGATGCTTTTCTGATAGCTCAACTG................................................................................GTTGCCACCTTCATTGCTGCTTATGCCAGTTGGAGCTTTGCTGCGATCTAACGAATTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593594" ref_strand="+" ref_description="SGN-E593594 [36828]">
      <seq>ctgacattgttcttaccgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgatggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14760" stop="12150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14460" g_stop="14369" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="125" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="207" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="368" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="554" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12497" g_stop="12450" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="602" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E593594" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14460" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATC</genome_strand>
        <mrna_strand>CTGACATTGTTCTTACCGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261445" ref_strand="+" ref_description="SGN-E261445 [cLEG-57-F4]">
      <seq>gctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttggtgagcgtcctggtttggtgctttgtggtgcttttctgatttgctcactggttgccacctgattgctgtttatgcaagttggagctttgctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15035" stop="12151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14735" g_stop="14720" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="255" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="370" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="531" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="717" r_length="186" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12497" g_stop="12451" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="763" r_length="46" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E261445" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14735" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGA-TTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAAT</genome_strand>
        <mrna_strand>GCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGGTGAGCGTCCTGGTTTGGTGCTTTGTGGTGCTTTTCTGATTTGCTC-ACTG................................................................................GTTGCCACC-TGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403883" ref_strand="+" ref_description="SGN-E403883 [PPC-12-C23]">
      <seq>ggagtattccctgagcacaaatatgagatagtaaaacgattgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttaccgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgatggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgggtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtgggtgcttttctgattgctcaactgggtgccacccttgattgctgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14917" stop="12173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="14720" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="252" r_length="239" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="285" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="367" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="528" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12763" g_stop="12578" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="714" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12497" g_stop="12473" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="740" r_length="26" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E403883" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12578"/>
          <exon e_start="12497" e_stop="12473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCA-CCTTGATTGCTGTTTATG</genome_strand>
        <mrna_strand>GGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAACGATTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACCGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGGTGCTTTTCTGATTGCTCAACTG................................................................................GGTGCCACCCTTGATTGCTGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602462" ref_strand="+" ref_description="SGN-E602462 [55526]">
      <seq>gggaatgggaaccaacatgtatccttcgtctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagatagtaaaacgattgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttaccgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgatggtaccattatgaccaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgggtatttggggtatcaaacacttcagaggacagcaacctgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcagggcctgatattgtcacaagatctcgaaagttggtcgtttgttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15144" stop="12321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14844" g_stop="14720" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="364" r_length="239" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="397" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="479" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="641" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12763" g_stop="12621" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="786" r_length="145" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E602462" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14844" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGA-CAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATC-AACACTTCAGAGGACAGCAA-CTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCG-AAGTTGGTCGTTTGTTGAGCG</genome_strand>
        <mrna_strand>GGGAATGGGAACCAACATGTATCCTTCGTCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAACGATTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACCGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACCAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTATTTGGGGTATCAAACACTTCAGAGGACAGCAACCTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGGCCTGATA-TTGTCACAAGATCTCGAAAGTTGGTCGTTTGTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202221" ref_strand="+" ref_description="SGN-E202221 [cLEC-7-L20]">
      <seq>ttccatcacaatccgtattgtgcttggatttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaaagtggtcgtttgttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14471" stop="12321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14171" g_stop="14150" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="104" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="265" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12763" g_stop="12621" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="408" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E202221" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14171" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCG</genome_strand>
        <mrna_strand>TTCCATCACAATCCGTATTGTG..........................................................................................CTTGGATTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAAGTGGTCGTTTGTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730038" ref_strand="+" ref_description="SGN-E730038 [LA22DE01]">
      <seq>gatgggtttgctggtgttttccctgagcacaaatatgagatagtaaagcgcttgcaagctaggaaacatatctgtggtatgactggtgatggagtcaatgatgctcctgctctaaagaaagctgatattggaattgctgttgacgatgcaactgatgcggctcgcagtgcttctgatattgtccttactgaacctggtcttagtgtcatcattagtgctgttttgaccagtcgagcaatctttcaaaggatgaaaaattacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggctctgatctggaagtttgactttccgcctttcatggtgcttatcattgcaattcttaatgatggtaccattatgacgatatcgaaggatagggtcaaaccatctcctctgcctgatagctggaaactggctgagatttttactactggagttgttcttggtggctacttggcaatgatgacggtcattttcttttgggccgcatacaaaacaaatttcttcccgcgaatatttggggtatcaacacttgagaaaacagcaactgattttaggaagctcgccctctgcgatataccttcaagtaaacactatcagtcaggccctgatattcgttacaagatctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14928" stop="12340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14744" g_stop="14720" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="264" r_length="239" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.92"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="297" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="379" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.92"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="540" r_length="161" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12763" g_stop="12640" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="662" r_length="122" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E730038" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14744" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTG-CATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAA</genome_strand>
        <mrna_strand>GATGGGTTTGCTGGTGTTTTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAGCGCTTGCAAGCTAGGAAACATATCTGTGGTATGACTGGTGATGGAGTCAATGATGCTCCTGCTCTAAAGAAAGCTGATATTGGAATTGCTGTTGACGATGCAACTGATGCGGCTCGCAGTGCTTCTGATATTGTCCTTACTGAACCTGGTCTTAGTGTCATCATTAGTGCTGTTTTGACCAGTCGAGCAATCTTTCAAAGGATGAAAAATTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCTCTGATCTGGAAGTTTGACTTTCCGCCTTTCATGGTGCTTATCATTGCAATTCTTAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACGATATCGAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGCTGGAAACTGGCTGAGATTTTTACTACTGGAGTTGTTCTTGGTGGCTACTTGGCAATGATGACGGTCATTTTCTTTTGGGCCGCATACAAAACAAATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATATTTGGGGTATCAACACTTGAGAAAACAGCAACTGAT---TTTAGGAAGCTCGCCCTCTGCGATATACCTTCAAGTAAACACTATCAGTCAGGCCCTGATATTCGTTACAAGATCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703859" ref_strand="+" ref_description="SGN-E703859 [FA22CF09]">
      <seq>aggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15168" stop="12350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14868" g_stop="14720" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="388" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="421" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="503" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="664" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12763" g_stop="12650" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="778" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E703859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14868" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACA</genome_strand>
        <mrna_strand>AGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739874" ref_strand="+" ref_description="SGN-E739874 [LC19AG10]">
      <seq>ccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15911" stop="12351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15611" g_stop="15503" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="274" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="513" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="546" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="628" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="789" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12763" g_stop="12651" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="902" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E739874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15611" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCAC</genome_strand>
        <mrna_strand>CCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701502" ref_strand="+" ref_description="SGN-E701502 [FA16AF05]">
      <seq>acaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcaacaatttaccttcaagtgagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15187" stop="12378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15094" g_stop="15082" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15081" i_stop="14885" i_length="197">
            <donor d_prob="0.160" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="178" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="417" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="450" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="532" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="693" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12763" g_stop="12678" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="779" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E701502" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15094" e_stop="15082"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCAC</genome_strand>
        <mrna_strand>ACAATGATCACAG.....................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAACAATTTACCTTCAAGTGAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336532" ref_strand="+" ref_description="SGN-E336532 [cTOE-4-N20]">
      <seq>tggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14849" stop="12388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14549" g_stop="14369" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="214" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="296" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="457" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12763" g_stop="12688" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="533" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E336532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14549" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTC</genome_strand>
        <mrna_strand>TGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735855" ref_strand="+" ref_description="SGN-E735855 [LC03BF03]">
      <seq>cgccttggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgaaagtcattttcttttgggcagcatatgaaaaacatttcttcccgcgtgtatttggggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15911" stop="12447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15613" g_stop="15503" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="276" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="515" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="548" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13396" g_stop="13236" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="791" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12763" g_stop="12747" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="808" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E735855" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15613" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13236"/>
          <exon e_start="12763" e_stop="12747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATC</genome_strand>
        <mrna_strand>CGCCTTGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGAAAGTCATTTTCTTTTGGGCAGCATATGAAAAACATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583459" ref_strand="+" ref_description="SGN-E583459 [9280]">
      <seq>gaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagatagtaaaacgattgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttaccgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactacacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgatggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttgggtggctacttgggccaatgatgacagtcattttccttttgggccagcatatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15089" stop="12950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14789" g_stop="14720" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="309" r_length="239" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="342" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="424" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13250" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="576" r_length="152" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E583459" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14789" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTT-GGTGGCTACTT-GG-CAATGATGACAGTCATTTT-CTTTTGGG-CAGCATATGAGA</genome_strand>
        <mrna_strand>GAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAACGATTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACCGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTACACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGGTGGCTACTTGGGCCAATGATGACAGTCATTTTCCTTTTGGGCCAGCATATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261526" ref_strand="+" ref_description="SGN-E261526 [cLEG-57-G4]">
      <seq>gctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatattcaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15035" stop="12953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14735" g_stop="14720" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="255" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="370" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13396" g_stop="13253" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="514" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E261526" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14735" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATG</genome_strand>
        <mrna_strand>GCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATTCAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721342" ref_strand="+" ref_description="SGN-E721342 [FC13CB10]">
      <seq>aagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16198" stop="13002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15898" g_stop="15854" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="190" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="355" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="594" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="627" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="709" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13396" g_stop="13302" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="804" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E721342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15898" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13978"/>
          <exon e_start="13396" e_stop="13302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTT</genome_strand>
        <mrna_strand>AAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312687" ref_strand="+" ref_description="SGN-E312687 [cTOA-8-A21]">
      <seq>aatcttggagtgaatgttaaaatgatcacaggggatcggactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggggcttatcattgcaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15833" stop="13686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15533" g_stop="15503" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="197" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="436" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="469" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14059" g_stop="13986" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="543" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E312687" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15533" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="13986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATC-AACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCT</genome_strand>
        <mrna_strand>AATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCGGACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGGGCTTATCATTGCAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738835" ref_strand="+" ref_description="SGN-E738835 [LC15AE09]">
      <seq>ctgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaaatcttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16586" stop="13733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16286" g_stop="16252" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="158" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="263" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="408" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="573" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="812" r_length="239" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="845" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14059" g_stop="14033" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="872" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E738835" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16286" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14369"/>
          <exon e_start="14182" e_stop="14150"/>
          <exon e_start="14059" e_stop="14033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATC</genome_strand>
        <mrna_strand>CTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAAATCTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417407" ref_strand="+" ref_description="SGN-E417407 [STM-25-K8]">
      <seq>cacttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggcttgcgctcacttggtgtggcataccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacatgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcgtctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagatagtaaaacgattgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctggtgatgatgccactgatgctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16410" stop="14170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="16049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="167" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="312" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="477" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14607" g_stop="14470" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="615" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E417407" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTC</genome_strand>
        <mrna_strand>CACTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGCTTGCGCTCACTTGGTGTGGCATACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACATGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCGTCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAACGATTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGGTGATGATGCCACTGATGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737668" ref_strand="+" ref_description="SGN-E737668 [LC10DB10]">
      <seq>atctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17015" stop="14247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16715" g_stop="16694" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16574" g_stop="16455" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="142" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16454" i_stop="16372" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16371" g_stop="16252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="262" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="385" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="490" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="635" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="800" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14607" g_stop="14547" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="861" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E737668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16715" e_stop="16694"/>
          <exon e_start="16574" e_stop="16455"/>
          <exon e_start="16371" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGG</genome_strand>
        <mrna_strand>ATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487988" ref_strand="+" ref_description="SGN-E487988 [cSTE-27-K23]">
      <seq>caaaggtgttgatgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgatactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgaacagcacttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggcttgcgctcacttggtgtggcataccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacatgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcgtctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatgggtttgctggagtattccctgagcacaaatatgagatagtaaaacgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16663" stop="14279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16363" g_stop="16252" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="235" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="340" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="485" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="650" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14607" g_stop="14579" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="679" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E487988" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16363" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
          <exon e_start="14607" e_stop="14579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTG</genome_strand>
        <mrna_strand>CAAAGGTGTTGATGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGATACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGAACAGCACTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGCTTGCGCTCACTTGGTGTGGCATACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACATGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCGTCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGGTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATAGTAAAACGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446101" ref_strand="+" ref_description="SGN-E446101 [cSTA-19-P20]">
      <seq>cacttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggcttgcgctcacttggtgtggcataccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacatgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcgtctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16410" stop="14420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="16049" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="167" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15647" g_stop="15503" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="312" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14884" g_stop="14720" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="477" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E446101" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15503"/>
          <exon e_start="14884" e_stop="14720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG</genome_strand>
        <mrna_strand>CACTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGCTTGCGCTCACTTGGTGTGGCATACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACATGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCGTCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334130" ref_strand="+" ref_description="SGN-E334130 [cTOD-21-M5]">
      <seq>ttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16655" stop="15227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16355" g_stop="16252" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="227" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="332" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15647" g_stop="15527" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="453" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E334130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16355" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTG</genome_strand>
        <mrna_strand>TTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202104" ref_strand="+" ref_description="SGN-E202104 [cLEC-7-I5]">
      <seq>tgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16855" stop="15291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16555" g_stop="16455" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16454" i_stop="16372" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16371" g_stop="16252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="221" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="344" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15958" g_stop="15854" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="449" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15647" g_stop="15591" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="506" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E202104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16555" e_stop="16455"/>
          <exon e_start="16371" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15854"/>
          <exon e_start="15647" e_stop="15591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTC</genome_strand>
        <mrna_strand>TGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366206" ref_strand="+" ref_description="SGN-E366206 [cLPT-1-K19]">
      <seq>gatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctatcgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggctccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcagtgattgataagtttgctgagaggggtttgcgctcacttggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17016" stop="15564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16716" g_stop="16694" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16574" g_stop="16455" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="143" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16454" i_stop="16372" i_length="83">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16371" g_stop="16252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="263" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16171" g_stop="16049" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="386" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15958" g_stop="15864" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="481" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E366206" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16716" e_stop="16694"/>
          <exon e_start="16574" e_stop="16455"/>
          <exon e_start="16371" e_stop="16252"/>
          <exon e_start="16171" e_stop="16049"/>
          <exon e_start="15958" e_stop="15864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGT</genome_strand>
        <mrna_strand>GATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATCGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCTCCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCAGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333723" ref_strand="+" ref_description="SGN-E333723 [cTOD-22-O9]">
      <seq>aatgtccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgngattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgangagatggctggtatggacgtgctttgtagtgancagacagggacccttacactaaacaagcttactgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17709" stop="16172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17556" g_stop="17548" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17547" i_stop="17402" i_length="146">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17401" g_stop="17267" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="145" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17266" i_stop="17177" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17176" g_stop="16997" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="325" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16996" i_stop="16901" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16900" g_stop="16694" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="532" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16574" g_stop="16472" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="635" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E333723" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17556" e_stop="17548"/>
          <exon e_start="17401" e_stop="17267"/>
          <exon e_start="17176" e_stop="16997"/>
          <exon e_start="16900" e_stop="16694"/>
          <exon e_start="16574" e_stop="16472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAG-CCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTG</genome_strand>
        <mrna_strand>AATGTCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGNGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGANGAGATGGCTGGTATGGACGTGCTTTGTAGTGANCAGACAGGGACCCTTACACTAAACAAGCTTACTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366278" ref_strand="+" ref_description="SGN-E366278 [cLPT-1-F14]">
      <seq>ctgcaaatgctcgtcttcttgaaggtgatccgctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggttctggagatggtgtctactttggttctacctgtaagcagggagagatagaaactgtcgtcatcaccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaaccatgtgggacacttacaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgatagtagatatcattgtgatgaaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttggccttctcattggtggaattacaattgccatgccaaccgttctttctgtcacaatggcaattggatctcatcggctcgctcaacaaggtgctattacgaaaagaatgacagctattgacgagatggctggtatggacatgctttgtattgacaagacagggacccttacactaaacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17613" stop="16181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17313" g_stop="17267" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17266" i_stop="17177" i_length="90">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17176" g_stop="16997" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="227" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16996" i_stop="16901" i_length="96">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16900" g_stop="16694" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="434" r_length="207" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16574" g_stop="16481" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="528" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E366278" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17313" e_stop="17267"/>
          <exon e_start="17176" e_stop="16997"/>
          <exon e_start="16900" e_stop="16694"/>
          <exon e_start="16574" e_stop="16481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGC</genome_strand>
        <mrna_strand>CTGCAAATGCTCGTCTTCTTGAAGGTGATCCGCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTTCTGGAGATGGTGTCTACTTTGGTTCTACCTGTAAGCAGGGAGAGATAGAAACTGTCGTCATCACCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAACCATGTGGGACACTTACAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAGTAGATATCATTGTGATGAACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGGCCTTCTCATTGGTGGAATTACAATTGCCATGCCAACCGTTCTTTCTGTCACAATGGCAATTGGATCTCATCGGCTCGCTCAACAA.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGACGAGATGGCTGGTATGGACATGCTTTGTATTGACAAGACAGGGACCCTTACACTAAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295451" ref_strand="+" ref_description="SGN-E295451 [cLET-23-L20]">
      <seq>aaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17632" stop="16249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17332" g_stop="17267" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17266" i_stop="17177" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17176" g_stop="16997" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="246" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16996" i_stop="16901" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16900" g_stop="16694" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="453" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16574" g_stop="16549" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="479" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E295451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17332" e_stop="17267"/>
          <exon e_start="17176" e_stop="16997"/>
          <exon e_start="16900" e_stop="16694"/>
          <exon e_start="16574" e_stop="16549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGC</genome_strand>
        <mrna_strand>AAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739751" ref_strand="+" ref_description="SGN-E739751 [LC18CH03]">
      <seq>cgatcctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggagagcaaattcttgaaatttctggggtttatgtggaaccccctctcatgggttatggaagctgctgctattatggcaattgctcttgcaaatggaggaggaaagcctccggattggcaagattttgtgggtattattaccttgctagtgattaactcaacaattagttttattgaggagaataatgctggcaatgcagcagctgctctcatggctcgtctcgctcctaaagccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18798" stop="16967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18500" g_stop="18455" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18454" i_stop="18360" i_length="95">
            <donor d_prob="0.283" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18359" g_stop="18240" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="166" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18239" i_stop="17871" i_length="369">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17870" g_stop="17772" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="265" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17771" i_stop="17686" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17685" g_stop="17548" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="403" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17547" i_stop="17402" i_length="146">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17401" g_stop="17267" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="538" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-E739751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18500" e_stop="18455"/>
          <exon e_start="18359" e_stop="18240"/>
          <exon e_start="17870" e_stop="17772"/>
          <exon e_start="17685" e_stop="17548"/>
          <exon e_start="17401" e_stop="17267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG</genome_strand>
        <mrna_strand>CGATCCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA......................................................................................GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483972" ref_strand="+" ref_description="SGN-E483972 [cSTE-11-J15]">
      <seq>tcccaacgtacggtgtgagatgacgatgggaacaagttgccaatgaaattaactttgaaatttccgaagtttcttctcctaataattaactccattacaatttccacatactttcttcctcatcaagtctctttcctccatagccatatccccaaatatataaactcacccatcttagctatcgaaatactcatttcgattcttcactcctttgctagctttgttgcttccctttagtatgggcaatttgttgggctgtgtacaagttgatcaatccaccgtcgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactgtctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtatttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcanatgatgctttctacaaactaagcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20488" stop="22441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20727" g_stop="20953" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="230" r_length="224" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21386" i_length="433">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.751" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21387" g_stop="21393" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="235" r_length="5" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21394" i_stop="21688" i_length="295">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="427" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22054" g_stop="22141" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="515" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E483972" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20727" e_stop="20953"/>
          <exon e_start="21387" e_stop="21393"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAATATGAGATGGCGATGGGAACGAGTAGCCAATCCAATTAA-TTTGATATTTACGAAGTATCTTCTCCTAATAATATTCGACTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACA</genome_strand>
        <mrna_strand>CGTACGGTGTGAGATGACGATGGGAACAAGTTGCCAATGAAATTAACTTTGAAATTTCCGAAGTTTCTTCTCCTAAT-A-ATT-AACTCCATTACAATTTCCACATACTTTCTTCCTCATCAAGTCTCTTTCCTCCATAGCCATATCCCCAAATATATAAACTCACCCATCTTAGCTATCGAAATACTCATTTCGATTCTTCACTCCTTTGCTAGCTTTGTTGCTTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................--CCTTT.......................................................................................................................................................................................................................................................................................................AGTATGGGCAATTTGTTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTATTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCANATGATGCTTTCTACAAACTAAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596692" ref_strand="+" ref_description="SGN-E596692 [40179]">
      <seq>gccaatgaaattaactttgaaatttccgaagtatcttatcctaataattaactccattacaatttccacatactttcttcctcatcaagtctctttcctccatagccatatccccaaatatataaactcatccatcttagctatcgaaatacccatttcgattcttcactcctttgctagctttgttgcttccctttgtaaagtatgggcaatttgttgtgctgtgtacaagttgatcaatccaccgttgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactttctgccttggtgcttcggattccagttagctggccatctctccctcagactgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaacttgtttcagacacttatagtggatatagaaccagatgagcatgtgaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20494" stop="22832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20759" g_stop="20953" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21386" i_length="433">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.751" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21387" g_stop="21397" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="201" r_length="9" r_score="0.727"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21398" i_stop="21688" i_length="291">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="393" r_length="192" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="514" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="606" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22457" g_stop="22532" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="684" r_length="78" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E596692" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20759" e_stop="20953"/>
          <exon e_start="21387" e_stop="21397"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATCCAATTAA-TTTGATATTTACGAAGTATCTTCTCCTAATAATATTCGACTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAA-TTG-TTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAG</genome_strand>
        <mrna_strand>GCCAATGAAATTAACTTTGAAATTTCCGAAGTATCTTATCCTAAT-A-ATT-AACTCCATTACAATTTCCACATACTTTCTTCCTCATCAAGTCTCTTTCCTCCATAGCCATATCCCCAAATATATAAACTCATCCATCTTAGCTATCGAAATACCCATTTCGATTCTTCACTCCTTTGCTAGCTTTGTTGCTTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................--CCTTTGTAA...................................................................................................................................................................................................................................................................................................AGTATGGGCAATTTGTTGTGCTGTGTACAAGTTGATCAATCCACCGTTGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTTTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGACTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAACTTGTTTCAGACACTTATAGTGGATATAGAACCAGATGAGCATGTGAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746565" ref_strand="+" ref_description="SGN-E746565 [GI|47104185]">
      <seq>ctccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20512" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20812" g_stop="20953" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="334" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="455" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="547" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="644" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22787" g_stop="23357" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="1215" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1231"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E746565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20812" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>CTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371198" ref_strand="+" ref_description="SGN-E371198 [TUS-28-F19]">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20513" stop="23142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20953" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="333" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="454" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="546" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="643" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22787" g_stop="22842" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="699" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E371198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAA</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370709" ref_strand="+" ref_description="SGN-E370709 [TUS-28-F20]">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20513" stop="22852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20953" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="333" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="454" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="546" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22552" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="642" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E370709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCT</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270759" ref_strand="+" ref_description="SGN-E270759 [cLEM-6-J8]">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttgctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20513" stop="22179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20953" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21879" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="332" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E270759" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20953"/>
          <exon e_start="21689" e_stop="21879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAA</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTGCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208936" ref_strand="+" ref_description="SGN-E208936 [cLEC-38-G17]">
      <seq>ttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20524" stop="22780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20824" g_stop="20953" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="322" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="443" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="535" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22480" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="559" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E208936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20824" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAA</genome_strand>
        <mrna_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208318" ref_strand="+" ref_description="SGN-E208318 [cLEC-37-E11]">
      <seq>ttccacatactttcttcttcatcaagtctctttcctgcatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctgtgttgcttcgagtatgggcaatctattgggctgggtacaagttgatcaatccaccgtcgcaattacagagcaggttggccagtgtcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcagattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgggagacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20524" stop="22175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20824" g_stop="20953" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21875" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="317" r_length="187" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E208318" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20824" e_stop="20953"/>
          <exon e_start="21689" e_stop="21875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGA</genome_strand>
        <mrna_strand>TTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTGCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTGTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGGGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGGTTGGCCAGTGTCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCAGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGGGAGACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205181" ref_strand="+" ref_description="SGN-E205181 [cLEC-16-N15]">
      <seq>agtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20548" stop="22796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20848" g_stop="20953" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="298" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="419" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="511" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22496" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="551" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E205181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20848" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTA</genome_strand>
        <mrna_strand>AGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271770" ref_strand="+" ref_description="SGN-E271770 [cLEM-8-G9]">
      <seq>ttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttgagtccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20568" stop="22855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20868" g_stop="20953" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="278" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="399" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="491" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="588" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22787" g_stop="22795" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="597" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E271770" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20868" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGC</genome_strand>
        <mrna_strand>TTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTGAGTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567337" ref_strand="+" ref_description="SGN-E567337 [11447]">
      <seq>caaatatataaactcacccatcttagctatcgaaatactcatattcgattgcttacactccgtttgctagctttgttgcttccctttagtatgggcaaatttgttgggctgtgtacaagttgatcaatccaccgtcgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactgtctgccttggtgcttcggattccaggttagctggccatctctccctcaggggtgcaacaacttggatgttcgctgcgagacaaagacaaaggataatgtatttgtcaatgttgtggcatcaattcagtaccgtgccctgggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgttctttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaagggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagcatgtgaagagagctatgaatgaaatcaatgcctgctgctcgggatgagggtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20575" stop="22855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20875" g_stop="20953" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21386" i_length="433">
            <donor d_prob="0.996" d_score="0.76"/>
            <acceptor a_prob="0.751" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21387" g_stop="21393" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="87" r_length="5" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21394" i_stop="21688" i_length="295">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="283" r_length="196" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="406" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="499" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="597" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22787" g_stop="22805" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="617" r_length="20" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E567337" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20875" e_stop="20953"/>
          <exon e_start="21387" e_stop="21393"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATATAAACTCACCCATCTTAACTATCGAAATACCCAT-TTCGATT-CTT-CACTCC-TTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGC-AATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCA-GTTAGCTGGCCATCTCTCCCTCA-GGGTGCAACAA-TTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCT-GGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTT-TTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAA-GGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATG-CTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTC-GGCTGAGGGTGGC</genome_strand>
        <mrna_strand>CAAATATATAAACTCACCCATCTTAGCTATCGAAATACTCATATTCGATTGCTTACACTCCGTTTGCTAGCTTTGTTGCTTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................--CCTTT.......................................................................................................................................................................................................................................................................................................AGTATGGGCAAATTTGTTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGTCTGCCTTGGTGCTTCGGATTCCAGGTTAGCTGGCCATCTCTCCCTCAGGGGTGCAACAACTTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTATTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTCTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCCTG.........................................................................................................................................................................................................................................CTGCTCGGGATGAGGGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566918" ref_strand="+" ref_description="SGN-E566918 [10963]">
      <seq>caaatatataaactcacccatcttagctatcgaaatactcatttcgattcttcactcctttgctagctttgttgcttccctttatatgggcaatttgttgggctgtgtacaagttgatcaatccaccgtcgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactgtctgccttggtgcttcggattccagttagctggccatctctccctcaggggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtatttgtcaactgttgtggcatcaattcagtaccgtgccctgggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaacaaatgaaattgccaaggctgtcgaggatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20575" stop="22658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20875" g_stop="20953" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21386" i_length="433">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.751" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21387" g_stop="21393" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="83" r_length="5" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21394" i_stop="21688" i_length="295">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="275" r_length="192" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="398" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22274" g_stop="22358" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="484" r_length="86" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E566918" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20875" e_stop="20953"/>
          <exon e_start="21387" e_stop="21393"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCA-GGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAA-TGTTGTGGCATCAATTCAGTACCGTGCCCT-GGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAA-AAATGAAATTGCCAAGGCTGTCGAGGATGAACT</genome_strand>
        <mrna_strand>CAAATATATAAACTCACCCATCTTAGCTATCGAAATACTCATTTCGATTCTTCACTCCTTTGCTAGCTTTGTTGCTTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................--CCTTT.......................................................................................................................................................................................................................................................................................................A-TATGGGCAATTTGTTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTATTTGTCAACTGTTGTGGCATCAATTCAGTACCGTGCCCTGGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAACAAATGAAATTGCCAAGGCTGTCGAGGATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205611" ref_strand="+" ref_description="SGN-E205611 [cLEC-21-F9]">
      <seq>ctcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20587" stop="22425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20887" g_stop="20953" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="259" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22125" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="331" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E205611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20887" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTC</genome_strand>
        <mrna_strand>CTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290060" ref_strand="+" ref_description="SGN-E290060 [cLET-5-G12]">
      <seq>cactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20627" stop="22459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20927" g_stop="20953" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="219" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22160" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="326" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E290060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20927" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGC</genome_strand>
        <mrna_strand>CACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407934" ref_strand="+" ref_description="SGN-E407934 [PPI-9-G6]">
      <seq>ctcctttgctagctttgttgcttccctttagtatgggcaatttgttgtgctgtgtacaagttgatcaatccaccgttgcaattaatgaacagtttggcaagtatcaagatgtgcttcatccaggttgccactttctgccttggtgcttcggattccagttagctggccatctctccctcagactgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggatgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaacagggctgaaggagaggcagaatcaaagtatctctcaggcttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaggatgtaatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20629" stop="23293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20929" g_stop="20953" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21563" i_length="610">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.045" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21564" g_stop="21568" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="29" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21688" i_length="120">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="221" r_length="192" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="342" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="434" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="531" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22787" g_stop="22993" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="738" r_length="207" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E407934" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20929" e_stop="20953"/>
          <exon e_start="21564" e_stop="21568"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACA</genome_strand>
        <mrna_strand>CTCCTTTGCTAGCTTTGTTGCTTC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTT........................................................................................................................AGTATGGGCAATTTGTTGTGCTGTGTACAAGTTGATCAATCCACCGTTGCAATTAATGAACAGTTTGGCAAGTATCAAGATGTGCTTCATCCAGGTTGCCACTTTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGACTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGATGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAACAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTCTCAGGCTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAGGATGTAATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207374" ref_strand="+" ref_description="SGN-E207374 [cLEC-36-C22]">
      <seq>tccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20630" stop="22853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20930" g_stop="20953" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="216" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="337" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="429" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="526" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E207374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20930" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG</genome_strand>
        <mrna_strand>TCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404151" ref_strand="+" ref_description="SGN-E404151 [PPC-12-H2]">
      <seq>ctttgctagctttgttgcttccctttagtatgggcaatttgttgtgctgtgtacaagttgatcaatccaccgttgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactttctgccttggtgcttcggattccagttagctggccatctctccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20632" stop="22138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20932" g_stop="20953" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21563" i_length="610">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.045" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21564" g_stop="21568" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="26" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21688" i_length="120">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21838" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="176" r_length="150" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E404151" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20932" e_stop="20953"/>
          <exon e_start="21564" e_stop="21568"/>
          <exon e_start="21689" e_stop="21838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTC</genome_strand>
        <mrna_strand>CTTTGCTAGCTTTGTTGCTTC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTT........................................................................................................................AGTATGGGCAATTTGTTGTGCTGTGTACAAGTTGATCAATCCACCGTTGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTTTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433693" ref_strand="+" ref_description="SGN-E433693 [STM-58-J10]">
      <seq>ttttgctagctttgttgcttccctttagtatgggcaatttgttgtgctgtgtacaagttgatcaatccaccgttgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactttctgccttggtgcttcggattccagttagctggccatctctccctcagactgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggatgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaaaagggctgaaggagaggcagaatcaaagtatctctcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaggatgtaatggacatggtcctctttaaccagtactttgacaccatgaaagaaattggcgcttccagcaaatcatctgccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20633" stop="23360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="218" r_length="192" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="339" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="431" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="528" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22787" g_stop="23060" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="802" r_length="274" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E433693" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGT</genome_strand>
        <mrna_strand>AGTATGGGCAATTTGTTGTGCTGTGTACAAGTTGATCAATCCACCGTTGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTTTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGACTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGATGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAAAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTCTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAGGATGTAATGGACATGGTCCTCTTTAACCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGCAAATCATCTGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212055" ref_strand="+" ref_description="SGN-E212055 [cLEC-75-A1]">
      <seq>tgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaaagaattggcgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21383" stop="23342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="199" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="320" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="412" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="509" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22787" g_stop="23042" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="765" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E212055" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTC</genome_strand>
        <mrna_strand>AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAAGAATTGGCGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463058" ref_strand="+" ref_description="SGN-E463058 [cPRO-13-B9]">
      <seq>gttgcttccctttgtaaagtatgggcaatttgttgtgctgtgtacaagttgatcaatccaccgttgcaattaaggaacagtttggcaagtatcaagatgtgcttcagccaggttgccactttctgccttggtgcttcggattccagttagctggccatctctccctcagactgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggatgagggtggctgcntatgagaaagcagaagcggagaagattttgcaaattaaaagggctgaaggagangcagaatcaaagtatctctcagggttaggtattgcacgacagcgtcaagcgattgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21381" stop="23222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="209" r_length="192" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="330" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="422" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="519" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22787" g_stop="22922" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="655" r_length="136" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E463058" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGA</genome_strand>
        <mrna_strand>AGTATGGGCAATTTGTTGTGCTGTGTACAAGTTGATCAATCCACCGTTGCAATTAAGGAACAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTTTCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGACTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGATGAGGGTGGCTGCNTATGAGAAAGCAGAAGCGGAGAAGATTTTGCAAATTAAAAGGGCTGAAGGAGANGCAGAATCAAAGTATCTCTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728362" ref_strand="+" ref_description="SGN-E728362 [LA17CD02]">
      <seq>gcaatctattgggctgtgtacaagttgatcaatccaccgtcgcacttacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgttcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21396" stop="23388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21696" g_stop="21880" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="306" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="398" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="495" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22787" g_stop="23088" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="797" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E728362" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21696" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTA</genome_strand>
        <mrna_strand>GCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCACTTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGTTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274295" ref_strand="+" ref_description="SGN-E274295 [cLEN-15-P14]">
      <seq>gtcaatgttgtcgcatcaattcagtatcgtgccattgccgacaaagcaaatgaagctttctacaagctaagtaacactaagggtcagattcaggcatatgtttttgatgtcataagagctagtgttcctaaactcattcttgatgatgtgtttgagcaaaaaaatgaaattgccaaggctggtgaggaggaacttgagaaagctatgtcagcttatggatatgaaattgttcagacactcatcgttgatatagtaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaggcagaggccgagaagatcttgcaaattaagagggctgaaggagaggccgagtctaagtatctgtcaggattaggtattgcacgacaacgtcaagcaattgtggatggtctgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21949" stop="23232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22066" g_stop="22174" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="201" r_length="92" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="298" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22787" g_stop="22932" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="444" r_length="146" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E274295" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22066" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGA</genome_strand>
        <mrna_strand>GTCAATGTTGTCGCATCAATTCAGTATCGTGCCATTGCCGACAAAGCAAATGAAGCTTTCTACAAGCTAAGTAACACTAAGGGTCAGATTCAGGCATATGTTTTTGATG...................................................................................................TCATAAGAGCTAGTGTTCCTAAACTCATTCTTGATGATGTGTTTGAGCAAAAAAATGAAATTGCCAAGGCTGGTGAGGAGGAACTTGAGAAA...........................................................................................GCTATGTCAGCTTATGGATATGAAATTGTTCAGACACTCATCGTTGATATAGTACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAGGCAGAGGCCGAGAAGATCTTGCAAATTAAGAGGGCTGAAGGAGAGGCCGAGTCTAAGTATCTGTCAGGATTAGGTATTGCACGACAACGTCAAGCAATTGTGGATGGTCTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410197" ref_strand="+" ref_description="SGN-E410197 [PPI-16-G12]">
      <seq>atcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggatgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaaaagggctgaaggagaggcagaatcaaagtatctctcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaggatgtaatggacatggtcctcttaacccagtactttgacaccatgaaagaaattggcgcttccagcaaatcatctgccgtcttccttcctcatggacctggtgctgtaagagatgtggcaagccagattcgcgatggactcctcccagcttctgtggaccattaaatgttctactatatcagaaatgtcaaatgattttcacttgaagcagcctttttcattttgtgtttactttctgtaagtgtggatatgtttggtgagtttgactttgtatttgtgaatgcctctagtacctgtatatggtaaaaaaaatactatcctcgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21780" stop="23600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22080" g_stop="22174" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="187" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="284" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22787" g_stop="23289" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="787" r_length="503" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E410197" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22080" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCT-TATATTGTAAAGA</genome_strand>
        <mrna_strand>ATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGATGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAAAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTCTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAGGATGTAATGGACATGGTCCTCTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGCAAATCATCTGCCGTCTTCCTTCCTCATGGACCTGGTGCTGTAAGAGATGTGGCAAGCCAGATTCGCGATGGACTCCTCCCAGCTTCTGTGGACCATTAAATG-TTCTACTATATCAGAAATGTCAAATGATTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTAAGTGTGGATATGTTTGGTGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTACCTGTATATGGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462405" ref_strand="+" ref_description="SGN-E462405 [cPRO-11-H1]">
      <seq>atcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagcatgtgaagagagctatgaatgaaatcaatgctgctgctcggatgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaaaagggctgaaggagaggcagaatcaaagtatctctcanggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaggatgtaatggacatggtcctcttaacccagtactttgacaccatgaaagaaattggcgcttccagcaaatcatctgccgtcttccttcctcatggacctggtgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21780" stop="23387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22080" g_stop="22174" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="187" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="284" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22787" g_stop="23087" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="585" r_length="301" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E462405" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22080" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGT</genome_strand>
        <mrna_strand>ATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGCATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGATGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAAAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTCTCANGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAGGATGTAATGGACATGGTCCTCTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGCAAATCATCTGCCGTCTTCCTTCCTCATGGACCTGGTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244180" ref_strand="+" ref_description="SGN-E244180 [cLEE-1-D2]">
      <seq>cagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21803" stop="23297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22103" g_stop="22174" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="164" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="261" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22787" g_stop="22997" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="472" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E244180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22103" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="22997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGT</genome_strand>
        <mrna_strand>CAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371197" ref_strand="+" ref_description="SGN-E371197 [TUS-28-F19](-)">
      <seq>gggtcaaattcaggcctaatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21846" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22146" g_stop="22174" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="122" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="219" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22787" g_stop="23364" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="797" r_length="578" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E371197" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22146" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAAATTCAGGCCT-ATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTAC</genome_strand>
        <mrna_strand>GGGTCAAATTCAGGCCTAATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352178" ref_strand="+" ref_description="SGN-E352178 [cTOS-13-I6]">
      <seq>tttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21966" stop="23461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22166" g_stop="22174" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="101" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="198" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22787" g_stop="23161" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="573" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E352178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22166" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATC</genome_strand>
        <mrna_strand>TTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370708" ref_strand="+" ref_description="SGN-E370708 [TUS-28-F20](-)">
      <seq>aggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22155" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22455" g_stop="22553" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22787" g_stop="23364" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="677" r_length="578" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E370708" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22455" e_stop="22553"/>
          <exon e_start="22787" e_stop="23364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTAC</genome_strand>
        <mrna_strand>AGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353158" ref_strand="+" ref_description="SGN-E353158 [cTOS-14-M1]">
      <seq>aattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtnaagaattaatatccccagaccttgaagaattatatactattaatagatggatgtgatantttctccctcgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22180" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22480" g_stop="22553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22787" g_stop="23367" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="656" r_length="582" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E353158" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22480" e_stop="22553"/>
          <exon e_start="22787" e_stop="23367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATAT-CCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATA-TTTCT-CCTCGTTAATTGTACCTG</genome_strand>
        <mrna_strand>AATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTNAAGAA-TTAATATCCCCAGACC-TTGAAGAATTATATACTATTAATAGATGGATGTGATANTTTCTCCCTCGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406738" ref_strand="+" ref_description="SGN-E406738 [PPI-4-F16]">
      <seq>aaatcaatgctgctgctcggaatgaagggtggctgctaatgaaaaagcagaaggcggagaaaaattttgcaaattaaaagggcttgaaggagaggcagaatcaaagtatctcttcaggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaggatgtaatggacatggtcctcttaacccagtactttgacaccatgaaagaaattggcgcttccagcaaatcatctgccgtcttccttcctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22482" stop="23373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22542" g_stop="22553" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22787" g_stop="23073" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="304" r_length="292" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E406738" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22542" e_stop="22553"/>
          <exon e_start="22787" e_stop="23073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGG-CTG-AGGGTGGCTGCTAATGAGAAAGCAG-AGGCGGAG-AAGATTTTGCAAATTAAGAGGGC-TGAAGGAGAGGCAGAATCAAAGTATCT-TTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCAT</genome_strand>
        <mrna_strand>AAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGAATGAAGGGTGGCTGCTAATGAAAAAGCAGAAGGCGGAGAAAAATTTTGCAAATTAAAAGGGCTTGAAGGAGAGGCAGAATCAAAGTATCTCTTCA-GGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAGGATGTAATGGACATGGTCCTCTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGCAAATCATCTGCCGTCTTCCTTCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343357" ref_strand="+" ref_description="SGN-E343357 [cTOF-19-G11]">
      <seq>ctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatattttctcctcgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22487" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22787" g_stop="23366" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E343357" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22787" e_stop="23366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATA-TTTCTCCTCGTTAATTGTACCT</genome_strand>
        <mrna_strand>CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTTCTCCTCGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349761" ref_strand="-" ref_description="SGN-E349761 [cTOS-3-K18]">
      <seq>gagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22513" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22813" g_stop="23357" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="565"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E349761" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349761" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22813" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351943" ref_strand="-" ref_description="SGN-E351943 [cTOS-8-J14]">
      <seq>gagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22513" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22813" g_stop="23357" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="565"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E351943" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22813" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>GAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355309" ref_strand="+" ref_description="SGN-E355309 [cTOS-18-O3]">
      <seq>agaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22560" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22860" g_stop="23357" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="510"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E355309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22860" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>AGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278994" ref_strand="-" ref_description="SGN-E278994 [cLER-2-B22]">
      <seq>atggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22622" stop="23652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22922" g_stop="23353" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="450"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-E278994" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278994" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22922" e_stop="23353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTC</genome_strand>
        <mrna_strand>ATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>142</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2595" PGL_stop="1572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2595" e_stop="1572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="2595" e_stop="1572" e_length="1024"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2595" stop="1990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2595" stop="2032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2595" stop="2153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2595" stop="2169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2591" stop="1874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2534" stop="2085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2256" stop="1572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415824" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2004" stop="1572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415929" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAATAAATTAGATGAAGCCGCCATTGACACGAATGATCTGTCCATTAACCCATTCAGAAGTGTCGCCGGCCAAAAACCCAACCACCGGCGCGATATCCTCCGGCAGGCCAAGTCTTCCATGTGGACAATCATCAATCACCCTCTTTATCATGGCCTCTGTTTTCCCTTCGTAGAACAATTCCGTCGCTATGGGTCCCGGCGCCACACAATTCACCGTTATTCCTGTCCCTTTCAGTTCCTTCGCCAGTATCTTCACCATTGCTTCCACGGCCGCTTTTGAAGCGATGTACGCTCCGTATCCAGGTCTAAACGCCGCTGCTAAGGACGTCGATAAGCATATAATCCTCCCTCCTCCACCGTGTTTGATTCTCTTAGCACCTTCCTTGCAGCATACGAAAGCTCCACGAGCGTTCACATCAAAAGTCCTGTCGAAATCCTCTAGGGTTGTGTTTAGGATTGACGGGTATTTTCCGTCGAGTACCCCGGCGGAGTTTACCAGGATGTTGACCGGCGATTGAAAAGCCGATTCAGCAGCGTCAAAGAGGGATTTCACTTGATCTGGATCTGAGATATTGGCCTTGACCGCAATGGCACGTGGGTAACCGGAGGTGGAATTGATCTGGGATACGACGTCGTCAGCTTGAGTGGAGTTGGAGGAATAGTTGATGACGAGTTTAGCACCAAGTGAGGCCAAATGAAGTGCAATTGCTTTGCCGATTCCGCGAGAAGAACCGGTAACAATGGCCACACGATCTTGGAGTGGGAAGGTTGATTGGGCTACGTTTTCTGCTGCCATTGCTGAAGAGAAAACACACTAATTGCTATGGAAGTTTTGTGAAAGACACTGCAAAATTGCTGAAATATATATGAAGTTTTTGCCACGGAAACCATGGCGTTGCAGGTAGGAAAATCACGTCACTGCTCAAGTCACTCTGTATGGTATTAATAGAGTTCTTTTACTTCTTTTATAAAATATGTCTTGGAAGTTGGAACAACACCACTCACTCCTCATATTTAAAT</gDNA_template>
            <first_frame> K  *  I  N  *  M  K  P  P  L  T  R  M  I  C  P  L  T  H  S  E  V  S  P  A  K  N  P  T  T  G  A  I  S  S  G  R  P  S  L  P  C  G  Q  S  S  I  T  L  F  I  M  A  S  V  F  P  S  *  N  N  S  V  A  M  G  P  G  A  T  Q  F  T  V  I  P  V  P  F  S  S  F  A  S  I  F  T  I  A  S  T  A  A  F  E  A  M  Y  A  P  Y  P  G  L  N  A  A  A  K  D  V  D  K  H  I  I  L  P  P  P  P  C  L  I  L  L  A  P  S  L  Q  H  T  K  A  P  R  A  F  T  S  K  V  L  S  K  S  S  R  V  V  F  R  I  D  G  Y  F  P  S  S  T  P  A  E  F  T  R  M  L  T  G  D  *  K  A  D  S  A  A  S  K  R  D  F  T  *  S  G  S  E  I  L  A  L  T  A  M  A  R  G  *  P  E  V  E  L  I  W  D  T  T  S  S  A  *  V  E  L  E  E  *  L  M  T  S  L  A  P  S  E  A  K  *  S  A  I  A  L  P  I  P  R  E  E  P  V  T  M  A  T  R  S  W  S  G  K  V  D  W  A  T  F  S  A  A  I  A  E  E  K  T  H  *  L  L  W  K  F  C  E  R  H  C  K  I  A  E  I  Y  M  K  F  L  P  R  K  P  W  R  C  R  *  E  N  H  V  T  A  Q  V  T  L  Y  G  I  N  R  V  L  L  L  L  L  *  N  M  S  W  K  L  E  Q  H  H  S  L  L  I  F  K  </first_frame>
            <second_frame>  N  K  *  I  R  *  S  R  H  *  H  E  *  S  V  H  *  P  I  Q  K  C  R  R  P  K  T  Q  P  P  A  R  Y  P  P  A  G  Q  V  F  H  V  D  N  H  Q  S  P  S  L  S  W  P  L  F  S  L  R  R  T  I  P  S  L  W  V  P  A  P  H  N  S  P  L  F  L  S  L  S  V  P  S  P  V  S  S  P  L  L  P  R  P  L  L  K  R  C  T  L  R  I  Q  V  *  T  P  L  L  R  T  S  I  S  I  *  S  S  L  L  H  R  V  *  F  S  *  H  L  P  C  S  I  R  K  L  H  E  R  S  H  Q  K  S  C  R  N  P  L  G  L  C  L  G  L  T  G  I  F  R  R  V  P  R  R  S  L  P  G  C  *  P  A  I  E  K  P  I  Q  Q  R  Q  R  G  I  S  L  D  L  D  L  R  Y  W  P  *  P  Q  W  H  V  G  N  R  R  W  N  *  S  G  I  R  R  R  Q  L  E  W  S  W  R  N  S  *  *  R  V  *  H  Q  V  R  P  N  E  V  Q  L  L  C  R  F  R  E  K  N  R  *  Q  W  P  H  D  L  G  V  G  R  L  I  G  L  R  F  L  L  P  L  L  K  R  K  H  T  N  C  Y  G  S  F  V  K  D  T  A  K  L  L  K  Y  I  *  S  F  C  H  G  N  H  G  V  A  G  R  K  I  T  S  L  L  K  S  L  C  M  V  L  I  E  F  F  Y  F  F  Y  K  I  C  L  G  S  W  N  N  T  T  H  S  S  Y  L  N </second_frame>
            <third_frame>   I  N  K  L  D  E  A  A  I  D  T  N  D  L  S  I  N  P  F  R  S  V  A  G  Q  K  P  N  H  R  R  D  I  L  R  Q  A  K  S  S  M  W  T  I  I  N  H  P  L  Y  H  G  L  C  F  P  F  V  E  Q  F  R  R  Y  G  S  R  R  H  T  I  H  R  Y  S  C  P  F  Q  F  L  R  Q  Y  L  H  H  C  F  H  G  R  F  *  S  D  V  R  S  V  S  R  S  K  R  R  C  *  G  R  R  *  A  Y  N  P  P  S  S  T  V  F  D  S  L  S  T  F  L  A  A  Y  E  S  S  T  S  V  H  I  K  S  P  V  E  I  L  *  G  C  V  *  D  *  R  V  F  S  V  E  Y  P  G  G  V  Y  Q  D  V  D  R  R  L  K  S  R  F  S  S  V  K  E  G  F  H  L  I  W  I  *  D  I  G  L  D  R  N  G  T  W  V  T  G  G  G  I  D  L  G  Y  D  V  V  S  L  S  G  V  G  G  I  V  D  D  E  F  S  T  K  *  G  Q  M  K  C  N  C  F  A  D  S  A  R  R  T  G  N  N  G  H  T  I  L  E  W  E  G  *  L  G  Y  V  F  C  C  H  C  *  R  E  N  T  L  I  A  M  E  V  L  *  K  T  L  Q  N  C  *  N  I  Y  E  V  F  A  T  E  T  M  A  L  Q  V  G  K  S  R  H  C  S  S  H  S  V  W  Y  *  *  S  S  F  T  S  F  I  K  Y  V  L  E  V  G  T  T  P  L  T  P  H  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2418" stop="2074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNSVAMGPGATQFTVIPVPFSSFASIFTIASTAAFEAMYAPYPGLNAAAKDVDKHIILPPPPCLILLAPSLQHTKAPRAFTSKVLSKSSRVVFRIDGYFPSSTPAEFTRMLTGD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2593" stop="2312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKLDEAAIDTNDLSINPFRSVAGQKPNHRRDILRQAKSSMWTIINHPLYHGLCFPFVEQFRRYGSRRHTIHRYSCPFQFLRQYLHHCFHGRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2543" stop="2283"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIQKCRRPKTQPPARYPPAGQVFHVDNHQSPSLSWPLFSLRRTIPSLWVPAPHNSPLFLSLSVPSPVSSPLLPRPLLKRCTLRIQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1741" PGL_stop="2692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1741" e_stop="2692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="1741" e_stop="2692" e_length="952"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1741" stop="2421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1768" stop="2266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1768" stop="2132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1770" stop="2274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1772" stop="2193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1780" stop="2150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1781" stop="2264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1784" stop="2306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1784" stop="2290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1785" stop="2313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1818" stop="2208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1839" stop="2586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1859" stop="2608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1859" stop="2059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2024" stop="2564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2193" stop="2692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGTGTCTTTCACAAAACTTCCATAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGGCTTCATCTAATTTATTTATTTATTTATTTTGCCAAGAGTTTTGTTTTACCTGCAGTTTTCTATTGTGATATCTATTTGATTTTGTTTCATTTTCCCTTATTATATAATATAATATAAA</gDNA_template>
            <first_frame> F  A  V  S  F  T  K  L  P  *  Q  L  V  C  F  L  F  S  N  G  S  R  K  R  S  P  I  N  L  P  T  P  R  S  C  G  H  C  Y  R  F  F  S  R  N  R  Q  S  N  C  T  S  F  G  L  T  W  C  *  T  R  H  Q  L  F  L  Q  L  H  S  S  *  R  R  R  I  P  D  Q  F  H  L  R  L  P  T  C  H  C  G  Q  G  Q  Y  L  R  S  R  S  S  E  I  P  L  *  R  C  *  I  G  F  S  I  A  G  Q  H  P  G  K  L  R  R  G  T  R  R  K  I  P  V  N  P  K  H  N  P  R  G  F  R  Q  D  F  *  C  E  R  S  W  S  F  R  M  L  Q  G  R  C  *  E  N  Q  T  R  W  R  R  E  D  Y  M  L  I  D  V  L  S  S  G  V  *  T  W  I  R  S  V  H  R  F  K  S  G  R  G  S  N  G  E  D  T  G  E  G  T  E  R  D  R  N  N  G  E  L  C  G  A  G  T  H  S  D  G  I  V  L  R  R  E  N  R  G  H  D  K  E  G  D  *  *  L  S  T  W  K  T  W  P  A  G  G  Y  R  A  G  G  W  V  F  G  R  R  H  F  *  M  G  *  W  T  D  H  S  C  Q  W  R  L  H  L  I  Y  L  F  I  Y  F  A  K  S  F  V  L  P  A  V  F  Y  C  D  I  Y  L  I  L  F  H  F  P  L  L  Y  N  I  I  *  </first_frame>
            <second_frame>  L  Q  C  L  S  Q  N  F  H  S  N  *  C  V  F  S  S  A  M  A  A  E  N  V  A  Q  S  T  F  P  L  Q  D  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  S  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  G  Y  P  R  A  I  A  V  K  A  N  I  S  D  P  D  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  S  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  A  R  G  A  F  V  C  C  K  E  G  A  K  R  I  K  H  G  G  G  G  R  I  I  C  L  S  T  S  L  A  A  A  F  R  P  G  Y  G  A  Y  I  A  S  K  A  A  V  E  A  M  V  K  I  L  A  K  E  L  K  G  T  G  I  T  V  N  C  V  A  P  G  P  I  A  T  E  L  F  Y  E  G  K  T  E  A  M  I  K  R  V  I  D  D  C  P  H  G  R  L  G  L  P  E  D  I  A  P  V  V  G  F  L  A  G  D  T  S  E  W  V  N  G  Q  I  I  R  V  N  G  G  F  I  *  F  I  Y  L  F  I  L  P  R  V  L  F  Y  L  Q  F  S  I  V  I  S  I  *  F  C  F  I  F  P  Y  Y  I  I  *  Y  K </second_frame>
            <third_frame>   C  S  V  F  H  K  T  S  I  A  I  S  V  F  S  L  Q  Q  W  Q  Q  K  T  *  P  N  Q  P  S  H  S  K  I  V  W  P  L  L  P  V  L  L  A  E  S  A  K  Q  L  H  F  I  W  P  H  L  V  L  N  S  S  S  T  I  P  P  T  P  L  K  L  T  T  S  Y  P  R  S  I  P  P  P  V  T  H  V  P  L  R  S  R  P  I  S  Q  I  Q  I  K  *  N  P  S  L  T  L  L  N  R  L  F  N  R  R  S  T  S  W  *  T  P  P  G  Y  S  T  E  N  T  R  Q  S  *  T  Q  P  *  R  I  S  T  G  L  L  M  *  T  L  V  E  L  S  Y  A  A  R  K  V  L  R  E  S  N  T  V  E  E  G  G  L  Y  A  Y  R  R  P  *  Q  R  R  L  D  L  D  T  E  R  T  S  L  Q  K  R  P  W  K  Q  W  *  R  Y  W  R  R  N  *  K  G  Q  E  *  R  *  I  V  W  R  R  D  P  *  R  R  N  C  S  T  K  G  K  Q  R  P  *  *  R  G  *  L  M  I  V  H  M  E  D  L  A  C  R  R  I  S  R  R  W  L  G  F  W  P  A  T  L  L  N  G  L  M  D  R  S  F  V  S  M  A  A  S  S  N  L  F  I  Y  L  F  C  Q  E  F  C  F  T  C  S  F  L  L  *  Y  L  F  D  F  V  S  F  S  L  I  I  *  Y  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1778" stop="2584"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVFSSAMAAENVAQSTFPLQDRVAIVTGSSRGIGKAIALHLASLGAKLVINYSSNSTQADDVVSQINSTSGYPRAIAVKANISDPDQVKSLFDAAESAFQSPVNILVNSAGVLDGKYPSILNTTLEDFDRTFDVNARGAFVCCKEGAKRIKHGGGGRIICLSTSLAAAFRPGYGAYIASKAAVEAMVKILAKELKGTGITVNCVAPGPIATELFYEGKTEAMIKRVIDDCPHGRLGLPEDIAPVVGFLAGDTSEWVNGQIIRVNGGFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5125" PGL_stop="6110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5125" e_stop="6110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="5125" e_stop="6110" e_length="986"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5125" stop="5776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5133" stop="5783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5133" stop="5770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5151" stop="5868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5151" stop="5664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5214" stop="6014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5284" stop="5816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5425" stop="6110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACACCAGCACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTAAATAATACAGTTCAATTTGAAGTCTAAAT</gDNA_template>
            <first_frame> H  T  S  T  F  R  L  F  I  H  K  I  P  F  S  S  N  F  S  A  F  L  Q  *  S  W  R  K  Q  T  *  P  K  A  K  A  S  G  I  V  *  P  L  L  P  A  L  L  A  E  S  A  K  Q  L  L  F  T  W  P  L  S  E  L  N  S  S  S  T  T  L  P  T  L  L  K  L  T  T  S  Y  P  K  S  I  P  P  P  I  P  H  A  Q  S  P  S  K  P  M  S  P  I  Q  I  K  S  N  P  S  S  T  L  Q  N  Q  P  F  N  R  R  S  T  S  S  S  I  A  P  A  Y  S  T  G  N  T  R  R  S  *  T  Q  P  *  R  I  S  T  G  L  S  M  *  T  C  V  E  L  S  Y  A  A  K  K  A  L  I  E  S  S  A  E  E  A  E  G  L  Y  A  *  R  R  R  W  R  W  R  *  G  P  D  S  G  R  T  R  R  Q  R  R  P  W  K  Q  W  *  K  Y  W  R  K  N  *  K  G  Q  G  *  R  *  I  V  R  R  R  D  P  L  Q  R  I  C  F  T  K  G  K  R  R  R  *  L  R  R  R  L  M  S  V  H  M  E  G  L  D  C  R  R  M  W  R  R  W  L  G  F  *  P  A  M  L  L  N  G  L  M  D  R  L  F  V  S  M  A  V  I  F  D  T  S  I  C  S  F  Y  F  V  F  Y  L  A  F  P  L  K  Y  C  Y  N  Q  Y  F  *  P  E  I  R  *  K  L  N  N  T  V  Q  F  E  V  *   </first_frame>
            <second_frame>  T  P  A  L  F  V  C  L  S  T  K  F  H  F  L  A  I  S  V  L  F  F  S  D  H  G  G  N  K  R  S  P  R  P  K  P  R  E  S  C  S  H  C  Y  R  L  F  S  R  N  R  Q  S  N  C  S  S  L  G  L  S  R  S  *  T  R  H  Q  L  H  F  Q  L  Y  S  S  *  R  R  R  I  P  N  Q  F  H  L  R  F  P  T  R  N  R  R  Q  S  Q  C  L  R  S  K  S  S  Q  I  P  L  R  R  C  R  I  S  L  S  I  A  G  Q  H  P  R  Q  L  R  R  R  T  R  R  E  I  P  V  D  P  K  H  N  P  R  G  F  R  Q  D  F  R  C  E  R  A  W  S  F  H  M  L  Q  R  R  R  *  *  N  Q  A  R  R  R  R  K  D  Y  M  L  N  V  V  D  G  G  G  V  E  A  R  I  R  G  V  R  G  V  K  G  G  R  G  S  N  G  E  N  T  G  E  R  T  E  R  D  R  D  N  G  E  L  C  G  A  G  T  H  C  N  G  Y  V  L  R  R  E  N  G  G  D  D  *  E  G  D  *  *  V  S  T  W  K  A  W  T  A  G  G  C  G  A  G  G  W  V  F  S  R  R  C  F  *  M  G  *  W  T  D  Y  S  C  Q  W  R  L  Y  L  I  L  V  Y  V  R  F  I  S  F  F  I  W  H  F  L  *  N  I  V  I  I  N  I  F  N  L  K  *  G  K  N  *  I  I  Q  F  N  L  K  S  K  </second_frame>
            <third_frame>   H  Q  H  F  S  F  V  Y  P  Q  N  S  I  F  *  Q  F  Q  C  F  S  S  V  I  M  A  E  T  N  V  A  Q  G  Q  S  L  G  N  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  T  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  D  S  P  R  A  I  A  V  K  A  N  V  S  D  P  N  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  C  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  V  R  G  A  F  I  C  C  K  E  G  A  N  R  I  K  R  G  G  G  G  R  I  I  C  L  T  S  S  M  A  V  A  L  R  P  G  F  G  A  Y  A  A  S  K  A  A  V  E  A  M  V  K  I  L  A  K  E  L  K  G  T  G  I  T  V  N  C  A  A  P  G  P  I  A  T  D  M  F  Y  E  G  K  T  E  E  M  I  K  K  A  I  D  E  C  P  H  G  R  L  G  L  P  E  D  V  A  P  V  V  G  F  L  A  G  D  A  S  E  W  V  N  G  Q  I  I  R  V  N  G  G  Y  I  *  Y  *  Y  M  F  V  L  F  R  F  L  F  G  I  S  F  E  I  L  L  *  S  I  F  L  T  *  N  K  V  K  I  K  *  Y  S  S  I  *  S  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5172" stop="5984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFQCFSSVIMAETNVAQGQSLGNRVAIVTGSSRGIGKAIALHLASLGAKLVINYTSNSTQADDVVSQINSTSDSPRAIAVKANVSDPNQVKSLFDAAESAFQSPVNILVNCAGVLDGKYPSILNTTLEDFDRTFDVNVRGAFICCKEGANRIKRGGGGRIICLTSSMAVALRPGFGAYAASKAAVEAMVKILAKELKGTGITVNCAAPGPIATDMFYEGKTEEMIKKAIDECPHGRLGLPEDVAPVVGFLAGDASEWVNGQIIRVNGGYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="6061" PGL_stop="5557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6061" e_stop="5557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="6061" e_stop="5557" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6061" stop="5557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAAAAATATTGATTATAACAATATTTCAAAGGAAATGCCAAATAAAAAACGAAATAAAACGAACATATACTAGTATCAAATATAACCGCCATTGACACGAATAATCTGTCCATTAACCCATTCAGAAGCATCGCCGGCTAAAAACCCAACCACCGGCGCCACATCCTCCGGCAGTCCAAGCCTTCCATGTGGACACTCATCAATCGCCTTCTTAATCATCTCCTCCGTTTTCCCTTCGTAAAACATATCCGTTGCAATGGGTCCCGGCGCCGCACAATTCACCGTTATCCCTGTCCCTTTCAGTTCTTTCGCCAGTATTTTCACCATTGCTTCCACGGCCGCCTTTGACGCCGCGTACGCCCCGAATCCGGGCCTCAACGCCACCGCCATCGACGACGTTAAGCATATAATCCTTCCGCCTCCTCCGCGCTTGATTCTATTAGCGCCTTCTTTGCAGCATATGAAAGCTCCACGCACGTTCACATCGAAAGTCCTGTCGAAAT</gDNA_template>
            <first_frame> V  K  N  I  D  Y  N  N  I  S  K  E  M  P  N  K  K  R  N  K  T  N  I  Y  *  Y  Q  I  *  P  P  L  T  R  I  I  C  P  L  T  H  S  E  A  S  P  A  K  N  P  T  T  G  A  T  S  S  G  S  P  S  L  P  C  G  H  S  S  I  A  F  L  I  I  S  S  V  F  P  S  *  N  I  S  V  A  M  G  P  G  A  A  Q  F  T  V  I  P  V  P  F  S  S  F  A  S  I  F  T  I  A  S  T  A  A  F  D  A  A  Y  A  P  N  P  G  L  N  A  T  A  I  D  D  V  K  H  I  I  L  P  P  P  P  R  L  I  L  L  A  P  S  L  Q  H  M  K  A  P  R  T  F  T  S  K  V  L  S  K  </first_frame>
            <second_frame>  L  K  I  L  I  I  T  I  F  Q  R  K  C  Q  I  K  N  E  I  K  R  T  Y  T  S  I  K  Y  N  R  H  *  H  E  *  S  V  H  *  P  I  Q  K  H  R  R  L  K  T  Q  P  P  A  P  H  P  P  A  V  Q  A  F  H  V  D  T  H  Q  S  P  S  *  S  S  P  P  F  S  L  R  K  T  Y  P  L  Q  W  V  P  A  P  H  N  S  P  L  S  L  S  L  S  V  L  S  P  V  F  S  P  L  L  P  R  P  P  L  T  P  R  T  P  R  I  R  A  S  T  P  P  P  S  T  T  L  S  I  *  S  F  R  L  L  R  A  *  F  Y  *  R  L  L  C  S  I  *  K  L  H  A  R  S  H  R  K  S  C  R  N </second_frame>
            <third_frame>   *  K  Y  *  L  *  Q  Y  F  K  G  N  A  K  *  K  T  K  *  N  E  H  I  L  V  S  N  I  T  A  I  D  T  N  N  L  S  I  N  P  F  R  S  I  A  G  *  K  P  N  H  R  R  H  I  L  R  Q  S  K  P  S  M  W  T  L  I  N  R  L  L  N  H  L  L  R  F  P  F  V  K  H  I  R  C  N  G  S  R  R  R  T  I  H  R  Y  P  C  P  F  Q  F  F  R  Q  Y  F  H  H  C  F  H  G  R  L  *  R  R  V  R  P  E  S  G  P  Q  R  H  R  H  R  R  R  *  A  Y  N  P  S  A  S  S  A  L  D  S  I  S  A  F  F  A  A  Y  E  S  S  T  H  V  H  I  E  S  P  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5818" stop="5558"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISVAMGPGAAQFTVIPVPFSSFASIFTIASTAAFDAAYAPNPGLNATAIDDVKHIILPPPPRLILLAPSLQHMKAPRTFTSKVLSK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5918" stop="5712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNHRRHILRQSKPSMWTLINRLLNHLLRFPFVKHIRCNGSRRRTIHRYPCPFQFFRQYFHHCFHGRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5844" stop="5650"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPPFSLRKTYPLQWVPAPHNSPLSLSLSVLSPVFSPLLPRPPLTPRTPRIRASTPPPSTTLSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="18729" PGL_stop="11346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18729" e_stop="18658"/>
            <exon e_start="18529" e_stop="18455"/>
            <exon e_start="18359" e_stop="18240"/>
            <exon e_start="17870" e_stop="17772"/>
            <exon e_start="17685" e_stop="17548"/>
            <exon e_start="17401" e_stop="17267"/>
            <exon e_start="17176" e_stop="16997"/>
            <exon e_start="16900" e_stop="16694"/>
            <exon e_start="16574" e_stop="16455"/>
            <exon e_start="16371" e_stop="16252"/>
            <exon e_start="16171" e_stop="16049"/>
            <exon e_start="15958" e_stop="15854"/>
            <exon e_start="15647" e_stop="15503"/>
            <exon e_start="14884" e_stop="14720"/>
            <exon e_start="14607" e_stop="14369"/>
            <exon e_start="14182" e_stop="14150"/>
            <exon e_start="14059" e_stop="13978"/>
            <exon e_start="13396" e_stop="13236"/>
            <exon e_start="12763" e_stop="12578"/>
            <exon e_start="12497" e_stop="12315"/>
            <exon e_start="12230" e_stop="12052"/>
            <exon e_start="11792" e_stop="11346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.506" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.283" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18729" e_stop="18658" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.506" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18657" i_stop="18530" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18529" e_stop="18455" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.283" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18454" i_stop="18360" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18359" e_stop="18240" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.983">
            <gDNA_intron_boundary i_start="18239" i_stop="17871" i_length="369"/>
          </intron>
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              <exon start="13396" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13367" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13356" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13327" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13290" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13284" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13277" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12747" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12730" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12724" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12690" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12671" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12667" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12617" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12589" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12470" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12424" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12408" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12402" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12402" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12401" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12377" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12355" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12323" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417408" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12149" stop="12052"/>
              <exon start="11792" stop="11425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12052"/>
              <exon start="11792" stop="11449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12052"/>
              <exon start="11792" stop="11615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12117" stop="12052"/>
              <exon start="11792" stop="11427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11749" stop="11436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTGTTTTGGATTTGGTGGGCGATTTACCAATCTTATTTCTGGACCCGAGAAAAATCCTATCTTTCTTTG : GAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG : GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG : GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA : GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG : GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG : TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG : GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG : GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG : GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG : GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG : ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG : GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG : GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG : AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG : ATATATGCTGTTTCCATCACAATCCGTATTGTG : CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG : GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG : CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG : GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG : ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTCTATTCATTGATTAAAGAAGTTTGGCTTTTTT</gDNA_template>
            <first_frame> T  L  F  W  I  W  W  A  I  Y  Q  S  Y  F  W  T  R  E  K  S  Y  L  S  L  :  E  E  R  K  L  S  K  M  G  E  K  P  E  V  L  D  A  V  L  K  E  T  V  D  L  :  E  N  I  P  I  E  E  V  F  E  N  L  R  C  T  K  E  G  L  T  G  T  A  A  Q  E  R  L  A  I  F  G  Y  N  K  L  E  E  K  K  :  E  S  K  F  L  K  F  L  G  F  M  W  N  P  L  S  W  V  M  E  A  A  A  I  M  A  I  A  L  A  N  G  G  :  G  K  P  P  D  W  Q  D  F  V  G  I  I  T  L  L  V  I  N  S  T  I  S  F  I  E  E  N  N  A  G  N  A  A  A  A  L  M  A  R  L  A  P  K  A  K  :  V  L  R  D  G  K  W  N  E  E  D  A  A  V  L  V  P  G  D  I  I  S  I  K  L  G  D  I  I  P  A  D  A  R  L  L  E  G  D  P  L  K  I  D  Q  :  S  A  L  T  G  E  S  L  P  V  T  K  G  P  G  D  G  V  Y  S  G  S  T  C  K  Q  G  E  I  E  A  V  V  I  A  T  G  V  H  T  F  F  G  K  A  A  H  L  V  D  S  T  N  Q  V  G  H  F  Q  K  :  V  L  T  A  I  G  N  F  C  I  C  S  I  A  V  G  M  I  I  E  I  I  V  M  Y  P  I  Q  H  R  K  Y  R  P  G  I  D  N  L  L  V  L  L  I  G  G  I  P  I  A  M  P  T  V  L  S  V  T  M  A  I  G  S  H  R  L  A  Q  Q  :  G  A  I  T  K  R  M  T  A  I  E  E  M  A  G  M  D  V  L  C  S  D  K  T  G  T  L  T  L  N  K  L  T  V  D  K  N  L  V  E  :  V  F  A  K  G  V  D  A  D  T  V  V  L  M  A  A  R  A  S  R  T  E  N  Q  D  A  I  D  T  A  I  V  G  M  L  S  D  P  K  E  :  A  R  A  G  I  R  E  I  H  F  L  P  F  N  P  T  D  K  R  T  A  L  T  Y  L  D  G  E  G  K  M  H  R  V  S  K  G  A  P  E  Q  :  I  L  N  L  A  H  N  K  S  D  I  E  R  R  V  H  A  V  I  D  K  F  A  E  R  G  L  R  S  L  G  V  A  Y  Q  :  E  V  P  E  G  R  K  E  S  S  G  G  P  W  Q  F  I  G  L  L  P  L  F  D  P  P  R  H  D  S  A  E  T  I  R  R  A  L  N  L  G  V  N  V  K  M  I  T   : G  D  Q  L  A  I  G  K  E  T  G  R  R  L  G  M  G  T  N  M  Y  P  S  S  A  L  L  G  Q  T  K  D  E  S  I  A  S  L  P  I  D  E  L  I  E  K  A  D  G  F  A  G  V  F  P   : E  H  K  Y  E  I  V  K  R  L  Q  A  R  K  H  I  C  G  M  T  G  D  G  V  N  D  A  P  A  L  K  K  A  D  I  G  I  A  V  D  D  A  T  D  A  A  R  S  A  S  D  I  V  L  T  E  P  G  L  S  V  I  I  S  A  V  L  T  S  R  A  I  F  Q  R  M  K  N  Y  T  :  I  Y  A  V  S  I  T  I  R  I  V  :  L  G  F  M  L  L  A  L  I  W  K  F  D  F  P  P  F  M  V  L  I  I  A  I  L  N  D   : G  T  I  M  T  I  S  K  D  R  V  K  P  S  P  L  P  D  S  W  K  L  A  E  I  F  T  T  G  V  V  L  G  G  Y  L  A  M  M  T  V  I  F  F  W  A  A  Y  E  T  D  F  F  P  :  R  V  F  G  V  S  T  L  Q  R  T  A  T  D  D  F  R  K  L  A  S  A  I  Y  L  Q  V  S  T  I  S  Q  A  L  I  F  V  T  R  S  R  S  W  S  F  V  E  R  P  G  L  L  L  V  V  A  F  L  I  A  Q  L  :  V  A  T  L  I  A  V  Y  A  S  W  S  F  A  A  I  E  G  I  G  W  G  W  A  G  V  I  W  L  Y  N  L  V  F  Y  F  P  L  D  I  I  K  F  L  I  R  Y  A  L  S  G  R  A  W  D  L  V  L  E  Q  R  :  I  A  F  T  R  K  K  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S  I  F  S  R  V  F  I  S  W  F  S  S  I  W  F  L  Y  C  F  S  L  F  I  D  *  R  S  L  A  F   </first_frame>
            <second_frame>  L  C  F  G  F  G  G  R  F  T  N  L  I  S  G  P  E  K  N  P  I  F  L  W :   K  R  G  N  *  A  R  W  G  R  N  L  R  C  *  M  L  Y  *  R  R  L  W  I  W :   R  I  Y  P  L  K  K  F  L  K  I  *  D  V  P  K  R  V  L  L  V  Q  L  P  K  K  G  W  Q  F  L  G  T  T  N  *  R  R  R  R :   R  A  N  S  *  N  F  W  G  L  C  G  T  P  S  H  G  L  W  K  L  L  L  L  W  Q  L  L  L  Q  M  E  E :   E  S  L  R  I  G  K  I  L  W  V  L  L  P  C  *  *  L  T  Q  Q  L  V  L  L  R  R  I  M  L  A  M  Q  Q  L  L  S  W  L  V  S  L  L  K  P  R :   F  F  E  M  E  N  G  M  K  K  M  L  L  F  L  F  L  G  T  L  S  V  L  N  W  E  I  L  F  L  Q  M  L  V  F  L  K  V  I  P  *  K  L  T  S :   L  L  *  L  V  N  L  F  L  *  L  K  V  L  E  M  V  S  T  L  V  L  P  V  S  R  E  R  *  K  L  S  S  S  P  L  G  F  I  P  F  L  G  R  L  H  T  L  L  T  V  Q  I  K  W  D  T  S  K  R :   F  *  L  L  L  E  T  S  A  S  V  L  L  Q  W  G  *  *  *  R  S  L  *  C  T  L  S  N  T  A  N  I  A  L  G  L  T  I  F  L  S  F  S  L  V  E  F  Q  L  P  C  Q  R  F  F  Q  S  R  W  Q  L  D  L  I  G  S  L  N  R :   V  L  L  R  K  E  *  Q  L  L  R  R  W  L  V  W  T  C  F  V  V  T  R  Q  G  P  L  H  *  T  S  L  L  L  T  K  T  L  L  R :   F  L  P  K  V  L  T  Q  I  L  S  F  *  W  Q  L  E  R  L  V  Q  R  T  R  M  P  L  T  L  L  L  L  G  C  C  L  T  R  R  R :   L  V  L  A  F  V  K  Y  T  F  F  L  S  I  Q  L  T  S  V  Q  R  L  L  I  L  M  V  K  E  K  C  T  G  S  A  K  G  H  Q  S  R :   S  *  I  L  H  T  T  S  Q  T  *  N  V  E  F  M  R  *  L  I  S  L  L  R  G  V  C  A  H  L  V  W  P  T  R :   K  F  Q  R  E  G  R  R  V  P  E  D  H  G  N  S  L  V  S  C  L  C  L  I  L  Q  D  T  T  V  L  R  L  *  G  G  L  *  I  L  E  *  M  L  K  *  S  Q  :  G  I  N  W  L  *  E  K  K  Q  G  V  V  W  E  W  E  P  T  C  I  L  H  L  L  C  W  G  R  L  R  M  N  Q  L  L  L  Y  Q  L  M  N  *  *  K  R  L  M  V  L  L  E  Y  S  L  :  S  T  N  M  R  L  *  N  A  C  K  L  G  S  I  S  V  E  *  L  E  M  E  S  M  T  L  L  L  *  R  R  L  I  L  G  *  L  L  M  M  P  L  M  L  L  V  V  L  L  T  L  F  L  L  N  L  V  S  V  S  S  L  V  L  F  *  L  V  E  Q  S  F  K  G  *  K  T  I  R :   Y  M  L  F  P  S  Q  S  V  L  C :   L  V  L  C  F  W  P  L  S  G  S  L  T  F  H  L  S  W  C  L  S  L  Q  S  S  M  T  :  V  P  L  *  Q  Y  Q  R  I  G  S  N  H  L  L  C  L  I  V  G  S  W  L  R  F  S  L  L  G  L  F  L  V  A  T  W  Q  *  *  Q  S  F  S  F  G  Q  H  M  R  Q  I  S  S  R :   V  Y  L  G  Y  Q  H  F  R  G  Q  Q  L  M  T  S  G  N  L  H  Q  Q  F  T  F  K  *  A  L  S  V  R  P  *  Y  L  S  Q  D  L  E  V  G  R  L  L  S  V  L  V  C  C  L  W  L  L  F  *  L  L  N  W :   L  P  P  *  L  L  F  M  Q  V  G  A  L  L  Q  S  K  E  L  A  G  V  G  Q  E  *  S  G  S  T  I  *  Y  S  T  S  R  L  I  S  S  S  S  *  S  D  M  L  S  V  E  G  P  G  I  L  F  L  S  K  G :   L  L  S  P  G  R  R  I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  Y  S  Q  E  F  L  F  H  G  L  A  A  S  G  F  C  T  A  S  L  Y  S  L  I  K  E  V  W  L  F  </second_frame>
            <third_frame>   S  V  L  D  L  V  G  D  L  P  I  L  F  L  D  P  R  K  I  L  S  F  F   : G  R  E  E  I  E  Q  D  G  G  E  T  *  G  V  R  C  C  I  K  G  D  C  G  F   : G  E  Y  T  H  *  R  S  F  *  K  F  E  M  Y  Q  R  G  S  Y  W  Y  S  C  P  R  K  V  G  N  F  W  V  Q  Q  T  R  G  E  E   : G  E  Q  I  L  E  I  S  G  V  Y  V  E  P  P  L  M  G  Y  G  S  C  C  Y  Y  G  N  C  S  C  K  W  R   : R  K  A  S  G  L  A  R  F  C  G  Y  Y  Y  L  A  S  D  *  L  N  N  *  F  Y  *  G  E  *  C  W  Q  C  S  S  C  S  H  G  S  S  R  S  *  S  Q   : G  S  S  R  W  K  M  E  *  R  R  C  C  C  S  C  S  W  G  H  Y  Q  Y  *  T  G  R  Y  Y  S  C  R  C  S  S  S  *  R  *  S  P  E  N  *  P   : V  C  F  D  W  *  I  S  S  C  N  *  R  S  W  R  W  C  L  L  W  F  Y  L  *  A  G  R  D  R  S  C  R  H  R  H  W  G  S  Y  L  F  W  E  G  C  T  P  C  *  Q  Y  K  S  S  G  T  L  P  K   : G  F  D  C  Y  W  K  L  L  H  L  F  Y  C  S  G  D  D  N  R  D  H  C  D  V  P  Y  P  T  P  Q  I  S  P  W  D  *  Q  S  S  C  P  S  H  W  W  N  S  N  C  H  A  N  G  S  F  S  H  D  G  N  W  I  S  S  A  R  S  T   : G  C  Y  Y  E  K  N  D  S  Y  *  G  D  G  W  Y  G  R  A  L  *  *  Q  D  R  D  P  Y  T  K  Q  A  Y  C  *  Q  K  P  C  *   : G  F  C  Q  R  C  *  R  R  Y  C  R  S  D  G  S  S  S  V  S  Y  R  E  P  G  C  H  *  H  C  Y  C  W  D  V  V  *  P  E  G   : G  S  C  W  H  S  *  N  T  L  S  S  F  Q  S  N  *  Q  A  Y  S  A  Y  L  S  *  W  *  R  K  N  A  Q  G  Q  Q  R  G  T  R  A   : D  P  K  S  C  T  Q  Q  V  R  H  R  T  *  S  S  C  G  D  *  *  V  C  *  E  G  F  A  L  T  W  C  G  L  P   : G  S  S  R  G  K  E  G  E  F  R  R  T  M  A  I  H  W  S  P  A  F  V  *  S  S  K  T  R  Q  C  *  D  Y  K  E  G  F  E  S  W  S  E  C  *  N  D  H  R :   G  S  T  G  Y  R  K  R  N  R  A  S  S  G  N  G  N  Q  H  V  S  F  I  C  S  V  G  A  D  *  G  *  I  N  C  F  F  T  N  *  *  T  D  R  K  G  *  W  F  C  W  S  I  P  * :   A  Q  I  *  D  C  K  T  L  A  S  *  E  A  Y  L  W  N  D  W  R  W  S  Q  *  R  S  C  F  K  E  G  *  Y  W  D  S  C  *  *  C  H  *  C  C  S  *  C  F  *  H  C  S  Y  *  T  W  S  Q  C  H  H  *  C  C  S  D  *  S  S  N  L  S  K  D  E  K  L  Y   : D  I  C  C  F  H  H  N  P  Y  C   : A  W  F  Y  A  S  G  P  Y  L  E  V  *  L  S  T  F  H  G  A  Y  H  C  N  P  Q  *  R :   Y  H  Y  D  N  I  K  G  *  G  Q  T  I  S  S  A  *  *  L  E  A  G  *  D  F  H  Y  W  G  C  S  W  W  L  L  G  N  D  D  S  H  F  L  L  G  S  I  *  D  R  F  L  P   : A  C  I  W  G  I  N  T  S  E  D  S  N  *  *  L  Q  E  T  C  I  S  N  L  P  S  S  E  H  Y  Q  S  G  P  D  I  C  H  K  I  S  K  L  V  V  C  *  A  S  W  F  V  A  C  G  C  F  S  D  C  S  T   : G  C  H  L  D  C  C  L  C  K  L  E  L  C  C  N  R  R  N  W  L  G  L  G  R  S  D  L  A  L  Q  F  S  I  L  L  P  A  *  Y  H  Q  V  L  N  Q  I  C  S  Q  W  K  G  L  G  S  C  S  *  A  K   : D  C  F  H  Q  E  E  G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y  I  L  K  S  F  Y  F  M  V  *  Q  H  L  V  F  V  L  L  L  S  I  H  *  L  K  K  F  G  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18729" stop="18658"/>
                    <exon start="18529" stop="18455"/>
                    <exon start="18359" stop="18240"/>
                    <exon start="17870" stop="17772"/>
                    <exon start="17685" stop="17548"/>
                    <exon start="17401" stop="17267"/>
                    <exon start="17176" stop="16997"/>
                    <exon start="16900" stop="16694"/>
                    <exon start="16574" stop="16455"/>
                    <exon start="16371" stop="16252"/>
                    <exon start="16171" stop="16049"/>
                    <exon start="15958" stop="15854"/>
                    <exon start="15647" stop="15503"/>
                    <exon start="14884" stop="14720"/>
                    <exon start="14607" stop="14369"/>
                    <exon start="14182" stop="14150"/>
                    <exon start="14059" stop="13978"/>
                    <exon start="13396" stop="13236"/>
                    <exon start="12763" stop="12578"/>
                    <exon start="12497" stop="12315"/>
                    <exon start="12230" stop="12052"/>
                    <exon start="11792" stop="11696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2961</number_coding_nucleotides>
                  <number_encoded_amino_acids>987</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLFWIWWAIYQSYFWTREKSYLSLEERKLSKMGEKPEVLDAVLKETVDLENIPIEEVFENLRCTKEGLTGTAAQERLAIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWNEEDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDADTVVLMAARASRTENQDAIDTAIVGMLSDPKEARAGIREIHFLPFNPTDKRTALTYLDGEGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLGVAYQEVPEGRKESSGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQTKDESIASLPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETDFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFLIAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15094" e_stop="15082"/>
            <exon e_start="14884" e_stop="14720"/>
            <exon e_start="14607" e_stop="14369"/>
            <exon e_start="14182" e_stop="14150"/>
            <exon e_start="14059" e_stop="13978"/>
            <exon e_start="13396" e_stop="13236"/>
            <exon e_start="12763" e_stop="12578"/>
            <exon e_start="12497" e_stop="12315"/>
            <exon e_start="12230" e_stop="12052"/>
            <exon e_start="11792" e_stop="11346"/>
          </exon_coordinates>
        </AGS_line>
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            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11749" stop="11436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAGGATTTCAG : GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG : AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG : ATATATGCTGTTTCCATCACAATCCGTATTGTG : CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG : GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG : CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG : GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG : ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTCTATTCATTGATTAAAGAAGTTTGGCTTTTTT</gDNA_template>
            <first_frame> I  R  I  S   : G  D  Q  L  A  I  G  K  E  T  G  R  R  L  G  M  G  T  N  M  Y  P  S  S  A  L  L  G  Q  T  K  D  E  S  I  A  S  L  P  I  D  E  L  I  E  K  A  D  G  F  A  G  V  F  P   : E  H  K  Y  E  I  V  K  R  L  Q  A  R  K  H  I  C  G  M  T  G  D  G  V  N  D  A  P  A  L  K  K  A  D  I  G  I  A  V  D  D  A  T  D  A  A  R  S  A  S  D  I  V  L  T  E  P  G  L  S  V  I  I  S  A  V  L  T  S  R  A  I  F  Q  R  M  K  N  Y  T  :  I  Y  A  V  S  I  T  I  R  I  V  :  L  G  F  M  L  L  A  L  I  W  K  F  D  F  P  P  F  M  V  L  I  I  A  I  L  N  D   : G  T  I  M  T  I  S  K  D  R  V  K  P  S  P  L  P  D  S  W  K  L  A  E  I  F  T  T  G  V  V  L  G  G  Y  L  A  M  M  T  V  I  F  F  W  A  A  Y  E  T  D  F  F  P  :  R  V  F  G  V  S  T  L  Q  R  T  A  T  D  D  F  R  K  L  A  S  A  I  Y  L  Q  V  S  T  I  S  Q  A  L  I  F  V  T  R  S  R  S  W  S  F  V  E  R  P  G  L  L  L  V  V  A  F  L  I  A  Q  L  :  V  A  T  L  I  A  V  Y  A  S  W  S  F  A  A  I  E  G  I  G  W  G  W  A  G  V  I  W  L  Y  N  L  V  F  Y  F  P  L  D  I  I  K  F  L  I  R  Y  A  L  S  G  R  A  W  D  L  V  L  E  Q  R  :  I  A  F  T  R  K  K  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S  I  F  S  R  V  F  I  S  W  F  S  S  I  W  F  L  Y  C  F  S  L  F  I  D  *  R  S  L  A  F   </first_frame>
            <second_frame>  *  G  F  Q  :  G  I  N  W  L  *  E  K  K  Q  G  V  V  W  E  W  E  P  T  C  I  L  H  L  L  C  W  G  R  L  R  M  N  Q  L  L  L  Y  Q  L  M  N  *  *  K  R  L  M  V  L  L  E  Y  S  L  :  S  T  N  M  R  L  *  N  A  C  K  L  G  S  I  S  V  E  *  L  E  M  E  S  M  T  L  L  L  *  R  R  L  I  L  G  *  L  L  M  M  P  L  M  L  L  V  V  L  L  T  L  F  L  L  N  L  V  S  V  S  S  L  V  L  F  *  L  V  E  Q  S  F  K  G  *  K  T  I  R :   Y  M  L  F  P  S  Q  S  V  L  C :   L  V  L  C  F  W  P  L  S  G  S  L  T  F  H  L  S  W  C  L  S  L  Q  S  S  M  T  :  V  P  L  *  Q  Y  Q  R  I  G  S  N  H  L  L  C  L  I  V  G  S  W  L  R  F  S  L  L  G  L  F  L  V  A  T  W  Q  *  *  Q  S  F  S  F  G  Q  H  M  R  Q  I  S  S  R :   V  Y  L  G  Y  Q  H  F  R  G  Q  Q  L  M  T  S  G  N  L  H  Q  Q  F  T  F  K  *  A  L  S  V  R  P  *  Y  L  S  Q  D  L  E  V  G  R  L  L  S  V  L  V  C  C  L  W  L  L  F  *  L  L  N  W :   L  P  P  *  L  L  F  M  Q  V  G  A  L  L  Q  S  K  E  L  A  G  V  G  Q  E  *  S  G  S  T  I  *  Y  S  T  S  R  L  I  S  S  S  S  *  S  D  M  L  S  V  E  G  P  G  I  L  F  L  S  K  G :   L  L  S  P  G  R  R  I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  Y  S  Q  E  F  L  F  H  G  L  A  A  S  G  F  C  T  A  S  L  Y  S  L  I  K  E  V  W  L  F  </second_frame>
            <third_frame>   K  D  F  R :   G  S  T  G  Y  R  K  R  N  R  A  S  S  G  N  G  N  Q  H  V  S  F  I  C  S  V  G  A  D  *  G  *  I  N  C  F  F  T  N  *  *  T  D  R  K  G  *  W  F  C  W  S  I  P  * :   A  Q  I  *  D  C  K  T  L  A  S  *  E  A  Y  L  W  N  D  W  R  W  S  Q  *  R  S  C  F  K  E  G  *  Y  W  D  S  C  *  *  C  H  *  C  C  S  *  C  F  *  H  C  S  Y  *  T  W  S  Q  C  H  H  *  C  C  S  D  *  S  S  N  L  S  K  D  E  K  L  Y   : D  I  C  C  F  H  H  N  P  Y  C   : A  W  F  Y  A  S  G  P  Y  L  E  V  *  L  S  T  F  H  G  A  Y  H  C  N  P  Q  *  R :   Y  H  Y  D  N  I  K  G  *  G  Q  T  I  S  S  A  *  *  L  E  A  G  *  D  F  H  Y  W  G  C  S  W  W  L  L  G  N  D  D  S  H  F  L  L  G  S  I  *  D  R  F  L  P   : A  C  I  W  G  I  N  T  S  E  D  S  N  *  *  L  Q  E  T  C  I  S  N  L  P  S  S  E  H  Y  Q  S  G  P  D  I  C  H  K  I  S  K  L  V  V  C  *  A  S  W  F  V  A  C  G  C  F  S  D  C  S  T   : G  C  H  L  D  C  C  L  C  K  L  E  L  C  C  N  R  R  N  W  L  G  L  G  R  S  D  L  A  L  Q  F  S  I  L  L  P  A  *  Y  H  Q  V  L  N  Q  I  C  S  Q  W  K  G  L  G  S  C  S  *  A  K   : D  C  F  H  Q  E  E  G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y  I  L  K  S  F  Y  F  M  V  *  Q  H  L  V  F  V  L  L  L  S  I  H  *  L  K  K  F  G  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15094" stop="15082"/>
                    <exon start="14884" stop="14720"/>
                    <exon start="14607" stop="14369"/>
                    <exon start="14182" stop="14150"/>
                    <exon start="14059" stop="13978"/>
                    <exon start="13396" stop="13236"/>
                    <exon start="12763" stop="12578"/>
                    <exon start="12497" stop="12315"/>
                    <exon start="12230" stop="12052"/>
                    <exon start="11792" stop="11696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1335</number_coding_nucleotides>
                  <number_encoded_amino_acids>445</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRISGDQLAIGKETGRRLGMGTNMYPSSALLGQTKDESIASLPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETDFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFLIAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18536" e_stop="18455"/>
            <exon e_start="18359" e_stop="18240"/>
            <exon e_start="12209" e_stop="12052"/>
            <exon e_start="11792" e_stop="11425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.283" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18536" e_stop="18455" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.283" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18454" i_stop="18360" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18359" e_stop="18240" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18239" i_stop="12210" i_length="6030"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12209" e_stop="12052" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11792" e_stop="11425" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18536" stop="18455"/>
              <exon start="18359" stop="18240"/>
              <exon start="12209" stop="12052"/>
              <exon start="11792" stop="11651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12149" stop="12052"/>
              <exon start="11792" stop="11425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12052"/>
              <exon start="11792" stop="11449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12052"/>
              <exon start="11792" stop="11615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12117" stop="12052"/>
              <exon start="11792" stop="11427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12115" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11749" stop="11436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATAGGAAGAGAGGAAATTGAGCAAGATGGGGGAGAAACCTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG : GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG : GATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAG</gDNA_template>
            <first_frame> E  I  G  R  E  E  I  E  Q  D  G  G  E  T  *  G  V  R  C  C  I  K  G  D  C  G  F   : G  E  Y  T  H  *  R  S  F  *  K  F  E  M  Y  Q  R  G  S  Y  W  Y  S  C  P  R  K  V  G  N  F  W  V  Q  Q  T  R  G  E  E   : G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y  I  L  K   </first_frame>
            <second_frame>  K  *  E  E  R  K  L  S  K  M  G  E  K  P  E  V  L  D  A  V  L  K  E  T  V  D  L  :  E  N  I  P  I  E  E  V  F  E  N  L  R  C  T  K  E  G  L  T  G  T  A  A  Q  E  R  L  A  I  F  G  Y  N  K  L  E  E  K  K  :  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S  I  F  S  R  </second_frame>
            <third_frame>   N  R  K  R  G  N  *  A  R  W  G  R  N  L  R  C  *  M  L  Y  *  R  R  L  W  I  W :   R  I  Y  P  L  K  K  F  L  K  I  *  D  V  P  K  R  V  L  L  V  Q  L  P  K  K  G  W  Q  F  L  G  T  T  N  *  R  R  R  R :   I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  Y  S  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18529" stop="18455"/>
                    <exon start="18359" stop="18240"/>
                    <exon start="12209" stop="12052"/>
                    <exon start="11792" stop="11696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERKLSKMGEKPEVLDAVLKETVDLENIPIEEVFENLRCTKEGLTGTAAQERLAIFGYNKLEEKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="16319" e_stop="16252"/>
            <exon e_start="16171" e_stop="16049"/>
            <exon e_start="15958" e_stop="15870"/>
            <exon e_start="11751" e_stop="11436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.893" acc_prob="0.998" e_score="0.912"/>
          <exon-intron don_prob="0.993" acc_prob="0.961" e_score="0.959"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="16319" e_stop="16252" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.893" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="16171" e_stop="16049" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.961">
            <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="15958" e_stop="15870" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15869" i_stop="11752" i_length="4118"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="11751" e_stop="11436" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16319" stop="16252"/>
              <exon start="16171" stop="16049"/>
              <exon start="15958" stop="15870"/>
              <exon start="11751" stop="11436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576384" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11749" stop="11436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG : GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG : ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACT : TGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTAT</gDNA_template>
            <first_frame> R  L  V  Q  R  T  R  M  P  L  T  L  L  L  L  G  C  C  L  T  R  R  R :   L  V  L  A  F  V  K  Y  T  F  F  L  S  I  Q  L  T  S  V  Q  R  L  L  I  L  M  V  K  E  K  C  T  G  S  A  K  G  H  Q  S  R :   S  *  I  L  H  T  T  S  Q  T  *  N  V  E  F  M  R  *  L  I  S  L  L  R  G  V  C  A  H   : L  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S   </first_frame>
            <second_frame>  V  S  Y  R  E  P  G  C  H  *  H  C  Y  C  W  D  V  V  *  P  E  G   : G  S  C  W  H  S  *  N  T  L  S  S  F  Q  S  N  *  Q  A  Y  S  A  Y  L  S  *  W  *  R  K  N  A  Q  G  Q  Q  R  G  T  R  A   : D  P  K  S  C  T  Q  Q  V  R  H  R  T  *  S  S  C  G  D  *  *  V  C  *  E  G  F  A  L  T  :  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  </second_frame>
            <third_frame>   S  R  T  E  N  Q  D  A  I  D  T  A  I  V  G  M  L  S  D  P  K  E  :  A  R  A  G  I  R  E  I  H  F  L  P  F  N  P  T  D  K  R  T  A  L  T  Y  L  D  G  E  G  K  M  H  R  V  S  K  G  A  P  E  Q  :  I  L  N  L  A  H  N  K  S  D  I  E  R  R  V  H  A  V  I  D  K  F  A  E  R  G  L  R  S  L :   G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16317" stop="16252"/>
                    <exon start="16171" stop="16049"/>
                    <exon start="15958" stop="15870"/>
                    <exon start="11751" stop="11730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRTENQDAIDTAIVGMLSDPKEARAGIREIHFLPFNPTDKRTALTYLDGEGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLGEVEGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="11449" PGL_stop="11642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11449" e_stop="11642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="11449" e_stop="11642" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11449" stop="11642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTTATAGCTTAATATTCATTCTTGGTCAATTGTAATATATATAATGTAGTCAAGACATGAAAGCAGGAAAAGATGAACCAAGAATTCAAAGCAAAAAAATGTATAAAATATATAAGGCACTTTTAAACGCTGAAGATGTTACTACTATGAACTTGTCGCTCCAGAGGTAACTCACACACTCATTATGTCTT</gDNA_template>
            <first_frame> A  V  I  A  *  Y  S  F  L  V  N  C  N  I  Y  N  V  V  K  T  *  K  Q  E  K  M  N  Q  E  F  K  A  K  K  C  I  K  Y  I  R  H  F  *  T  L  K  M  L  L  L  *  T  C  R  S  R  G  N  S  H  T  H  Y  V   </first_frame>
            <second_frame>  L  L  *  L  N  I  H  S  W  S  I  V  I  Y  I  M  *  S  R  H  E  S  R  K  R  *  T  K  N  S  K  Q  K  N  V  *  N  I  *  G  T  F  K  R  *  R  C  Y  Y  Y  E  L  V  A  P  E  V  T  H  T  L  I  M  S  </second_frame>
            <third_frame>   C  Y  S  L  I  F  I  L  G  Q  L  *  Y  I  *  C  S  Q  D  M  K  A  G  K  D  E  P  R  I  Q  S  K  K  M  Y  K  I  Y  K  A  L  L  N  A  E  D  V  T  T  M  N  L  S  L  Q  R  *  L  T  H  S  L  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0125P18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="20727" PGL_stop="23367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20812" e_stop="20953"/>
            <exon e_start="21689" e_stop="21880"/>
            <exon e_start="22054" e_stop="22174"/>
            <exon e_start="22274" e_stop="22365"/>
            <exon e_start="22457" e_stop="22553"/>
            <exon e_start="22787" e_stop="23367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20812" e_stop="20953" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21689" e_stop="21880" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22054" e_stop="22174" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.824" acc_prob="0.950">
            <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22274" e_stop="22365" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22457" e_stop="22553" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22787" e_stop="23367" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20812" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20953"/>
              <exon start="21689" stop="21879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20824" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20824" stop="20953"/>
              <exon start="21689" stop="21875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20848" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20868" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20887" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20927" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20930" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21696" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22066" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22103" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22146" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22166" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22480" stop="22553"/>
              <exon start="22787" stop="23367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22542" stop="22553"/>
              <exon start="22787" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22787" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22860" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22922" stop="23353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG : AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG : GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG : TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG : GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> L  H  Y  N  F  H  I  L  S  S  S  S  S  L  F  P  P  *  T  Y  P  Q  I  Y  K  L  T  H  L  N  Y  R  N  T  H  F  D  S  S  L  L  R  *  L  C  C  F   : E  Y  G  Q  S  I  G  L  C  T  S  *  S  I  H  R  R  N  Y  R  A  V  W  Q  V  S  R  C  A  S  A  R  L  P  L  P  A  L  V  L  R  I  P  V  S  W  P  S  L  P  Q  G  A  T  I  G  C  S  L  R  D  K  D  K   : G  *  C  V  C  Q  C  C  G  I  N  S  V  P  C  P  G  R  Q  S  K  *  C  F  L  Q  T  K  Q  H  *  G  S  N  S  G  L  C  F  *  C :   H  *  S  K  C  S  K  T  Q  S  *  *  C  F  R  A  E  K  *  N  C  Q  G  C  R  G  *  T  *  E   : G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </first_frame>
            <second_frame>  S  I  T  I  S  T  Y  F  L  L  H  Q  V  S  F  L  H  R  L  I  P  K  Y  I  N  S  P  I  L  T  I  E  I  P  I  S  I  L  H  S  F  A  S  F  V  A  S  :  S  M  G  N  L  L  G  C  V  Q  V  D  Q  S  T  V  A  I  T  E  Q  F  G  K  Y  Q  D  V  L  Q  P  G  C  H  C  L  P  W  C  F  G  F  Q  L  A  G  H  L  S  L  R  V  Q  Q  L  D  V  R  C  E  T  K  T  K  :  D  N  V  F  V  N  V  V  A  S  I  Q  Y  R  A  L  A  D  K  A  N  D  A  F  Y  K  L  S  N  T  K  G  Q  I  Q  A  Y  V  F  D   : V  I  R  A  S  V  P  K  L  N  L  D  D  V  F  E  Q  K  N  E  I  A  K  A  V  E  D  E  L  E  K  :  A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </second_frame>
            <third_frame>   P  L  Q  F  P  H  T  F  F  F  I  K  S  L  S  S  I  D  L  S  P  N  I  *  T  H  P  S  *  L  S  K  Y  P  F  R  F  F  T  P  S  L  A  L  L  L  R :   V  W  A  I  Y  W  A  V  Y  K  L  I  N  P  P  S  Q  L  Q  S  S  L  A  S  I  K  M  C  F  S  Q  V  A  T  A  C  L  G  A  S  D  S  S  *  L  A  I  S  P  S  G  C  N  N  W  M  F  A  A  R  Q  R  Q  R :   I  M  C  L  S  M  L  W  H  Q  F  S  T  V  P  W  Q  T  K  Q  M  M  L  S  T  N  *  A  T  L  R  V  K  F  R  P  M  F  L  M  :  S  L  E  Q  V  F  Q  N  S  I  L  M  M  F  S  S  R  K  M  K  L  P  R  L  S  R  M  N  L  R  R :   L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20813" stop="20953"/>
                    <exon start="21689" stop="21880"/>
                    <exon start="22054" stop="22174"/>
                    <exon start="22274" stop="22365"/>
                    <exon start="22457" stop="22553"/>
                    <exon start="22787" stop="23145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITISTYFLLHQVSFLHRLIPKYINSPILTIEIPISILHSFASFVASSMGNLLGCVQVDQSTVAITEQFGKYQDVLQPGCHCLPWCFGFQLAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKGQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20727" e_stop="20953"/>
            <exon e_start="21387" e_stop="21393"/>
            <exon e_start="21689" e_stop="21880"/>
            <exon e_start="22054" e_stop="22174"/>
            <exon e_start="22274" e_stop="22365"/>
            <exon e_start="22457" e_stop="22553"/>
            <exon e_start="22787" e_stop="23367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.751" e_score="0.885"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.571"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="20727" e_stop="20953" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.751">
            <gDNA_intron_boundary i_start="20954" i_stop="21386" i_length="433"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="21387" e_stop="21393" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21394" i_stop="21688" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21689" e_stop="21880" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22054" e_stop="22174" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.824" acc_prob="0.950">
            <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22274" e_stop="22365" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22457" e_stop="22553" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="22787" e_stop="23367" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20727" stop="20953"/>
              <exon start="21387" stop="21393"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20875" stop="20953"/>
              <exon start="21387" stop="21393"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20875" stop="20953"/>
              <exon start="21387" stop="21393"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21696" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22066" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22103" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22146" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22166" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22480" stop="22553"/>
              <exon start="22787" stop="23367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22542" stop="22553"/>
              <exon start="22787" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22787" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22860" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22922" stop="23353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAAATATGAGATGGCGATGGGAACGAGTAGCCAATCCAATTAATTTGATATTTACGAAGTATCTTCTCCTAATAATATTCGACTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG : TAACTTT : AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG : GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG : TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG : GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> L  K  I  *  D  G  D  G  N  E  *  P  I  Q  L  I  *  Y  L  R  S  I  F  S  *  *  Y  S  T  P  L  Q  F  P  H  T  F  F  F  I  K  S  L  S  S  I  D  L  S  P  N  I  *  T  H  P  S  *  L  S  K  Y  P  F  R  F  F  T  P  S  L  A  L  L  L  R :   N  F  :  S  M  G  N  L  L  G  C  V  Q  V  D  Q  S  T  V  A  I  T  E  Q  F  G  K  Y  Q  D  V  L  Q  P  G  C  H  C  L  P  W  C  F  G  F  Q  L  A  G  H  L  S  L  R  V  Q  Q  L  D  V  R  C  E  T  K  T  K  :  D  N  V  F  V  N  V  V  A  S  I  Q  Y  R  A  L  A  D  K  A  N  D  A  F  Y  K  L  S  N  T  K  G  Q  I  Q  A  Y  V  F  D   : V  I  R  A  S  V  P  K  L  N  L  D  D  V  F  E  Q  K  N  E  I  A  K  A  V  E  D  E  L  E  K  :  A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </first_frame>
            <second_frame>  L  K  Y  E  M  A  M  G  T  S  S  Q  S  N  *  F  D  I  Y  E  V  S  S  P  N  N  I  R  L  H  Y  N  F  H  I  L  S  S  S  S  S  L  F  P  P  *  T  Y  P  Q  I  Y  K  L  T  H  L  N  Y  R  N  T  H  F  D  S  S  L  L  R  *  L  C  C  F   : V  T  L :   V  W  A  I  Y  W  A  V  Y  K  L  I  N  P  P  S  Q  L  Q  S  S  L  A  S  I  K  M  C  F  S  Q  V  A  T  A  C  L  G  A  S  D  S  S  *  L  A  I  S  P  S  G  C  N  N  W  M  F  A  A  R  Q  R  Q  R :   I  M  C  L  S  M  L  W  H  Q  F  S  T  V  P  W  Q  T  K  Q  M  M  L  S  T  N  *  A  T  L  R  V  K  F  R  P  M  F  L  M  :  S  L  E  Q  V  F  Q  N  S  I  L  M  M  F  S  S  R  K  M  K  L  P  R  L  S  R  M  N  L  R  R :   L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </second_frame>
            <third_frame>   *  N  M  R  W  R  W  E  R  V  A  N  P  I  N  L  I  F  T  K  Y  L  L  L  I  I  F  D  S  I  T  I  S  T  Y  F  L  L  H  Q  V  S  F  L  H  R  L  I  P  K  Y  I  N  S  P  I  L  T  I  E  I  P  I  S  I  L  H  S  F  A  S  F  V  A  S  :  *  L   : *  Y  G  Q  S  I  G  L  C  T  S  *  S  I  H  R  R  N  Y  R  A  V  W  Q  V  S  R  C  A  S  A  R  L  P  L  P  A  L  V  L  R  I  P  V  S  W  P  S  L  P  Q  G  A  T  I  G  C  S  L  R  D  K  D  K   : G  *  C  V  C  Q  C  C  G  I  N  S  V  P  C  P  G  R  Q  S  K  *  C  F  L  Q  T  K  Q  H  *  G  S  N  S  G  L  C  F  *  C :   H  *  S  K  C  S  K  T  Q  S  *  *  C  F  R  A  E  K  *  N  C  Q  G  C  R  G  *  T  *  E   : G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20901" stop="20953"/>
                    <exon start="21387" stop="21393"/>
                    <exon start="21689" stop="21880"/>
                    <exon start="22054" stop="22174"/>
                    <exon start="22274" stop="22365"/>
                    <exon start="22457" stop="22553"/>
                    <exon start="22787" stop="23145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKYPFRFFTPSLALLLRNFSMGNLLGCVQVDQSTVAITEQFGKYQDVLQPGCHCLPWCFGFQLAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKGQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20929" e_stop="20953"/>
            <exon e_start="21564" e_stop="21568"/>
            <exon e_start="21689" e_stop="21880"/>
            <exon e_start="22054" e_stop="22174"/>
            <exon e_start="22274" e_stop="22365"/>
            <exon e_start="22457" e_stop="22553"/>
            <exon e_start="22787" e_stop="23367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.045" e_score="0.920"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.600"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="20929" e_stop="20953" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.045">
            <gDNA_intron_boundary i_start="20954" i_stop="21563" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="21564" e_stop="21568" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21569" i_stop="21688" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21689" e_stop="21880" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22054" e_stop="22174" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.824" acc_prob="0.950">
            <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22274" e_stop="22365" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22457" e_stop="22553" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="22787" e_stop="23367" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20929" stop="20953"/>
              <exon start="21564" stop="21568"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20932" stop="20953"/>
              <exon start="21564" stop="21568"/>
              <exon start="21689" stop="21838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21696" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22066" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22103" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22146" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22166" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22480" stop="22553"/>
              <exon start="22787" stop="23367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22542" stop="22553"/>
              <exon start="22787" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22787" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22860" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22922" stop="23353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTTCGCTAGCTTTGTTGCTTCG : AATTT : AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG : GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG : TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG : GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> L  L  R  *  L  C  C  F   : E  F  :  S  M  G  N  L  L  G  C  V  Q  V  D  Q  S  T  V  A  I  T  E  Q  F  G  K  Y  Q  D  V  L  Q  P  G  C  H  C  L  P  W  C  F  G  F  Q  L  A  G  H  L  S  L  R  V  Q  Q  L  D  V  R  C  E  T  K  T  K  :  D  N  V  F  V  N  V  V  A  S  I  Q  Y  R  A  L  A  D  K  A  N  D  A  F  Y  K  L  S  N  T  K  G  Q  I  Q  A  Y  V  F  D   : V  I  R  A  S  V  P  K  L  N  L  D  D  V  F  E  Q  K  N  E  I  A  K  A  V  E  D  E  L  E  K  :  A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </first_frame>
            <second_frame>  S  F  A  S  F  V  A  S  :  N  L :   V  W  A  I  Y  W  A  V  Y  K  L  I  N  P  P  S  Q  L  Q  S  S  L  A  S  I  K  M  C  F  S  Q  V  A  T  A  C  L  G  A  S  D  S  S  *  L  A  I  S  P  S  G  C  N  N  W  M  F  A  A  R  Q  R  Q  R :   I  M  C  L  S  M  L  W  H  Q  F  S  T  V  P  W  Q  T  K  Q  M  M  L  S  T  N  *  A  T  L  R  V  K  F  R  P  M  F  L  M  :  S  L  E  Q  V  F  Q  N  S  I  L  M  M  F  S  S  R  K  M  K  L  P  R  L  S  R  M  N  L  R  R :   L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </second_frame>
            <third_frame>   P  S  L  A  L  L  L  R :   I   : *  Y  G  Q  S  I  G  L  C  T  S  *  S  I  H  R  R  N  Y  R  A  V  W  Q  V  S  R  C  A  S  A  R  L  P  L  P  A  L  V  L  R  I  P  V  S  W  P  S  L  P  Q  G  A  T  I  G  C  S  L  R  D  K  D  K   : G  *  C  V  C  Q  C  C  G  I  N  S  V  P  C  P  G  R  Q  S  K  *  C  F  L  Q  T  K  Q  H  *  G  S  N  S  G  L  C  F  *  C :   H  *  S  K  C  S  K  T  Q  S  *  *  C  F  R  A  E  K  *  N  C  Q  G  C  R  G  *  T  *  E   : G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20941" stop="20953"/>
                    <exon start="21564" stop="21568"/>
                    <exon start="21689" stop="21880"/>
                    <exon start="22054" stop="22174"/>
                    <exon start="22274" stop="22365"/>
                    <exon start="22457" stop="22553"/>
                    <exon start="22787" stop="23145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCCFEFSMGNLLGCVQVDQSTVAITEQFGKYQDVLQPGCHCLPWCFGFQLAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKGQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="20759" e_stop="20953"/>
            <exon e_start="21387" e_stop="21397"/>
            <exon e_start="21689" e_stop="21880"/>
            <exon e_start="22054" e_stop="22174"/>
            <exon e_start="22274" e_stop="22365"/>
            <exon e_start="22457" e_stop="22553"/>
            <exon e_start="22787" e_stop="23367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.751" e_score="0.908"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.727"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="20759" e_stop="20953" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.751">
            <gDNA_intron_boundary i_start="20954" i_stop="21386" i_length="433"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="21387" e_stop="21397" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21398" i_stop="21688" i_length="291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21689" e_stop="21880" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22054" e_stop="22174" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.824" acc_prob="0.950">
            <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22274" e_stop="22365" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22457" e_stop="22553" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="22787" e_stop="23367" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20759" stop="20953"/>
              <exon start="21387" stop="21397"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21696" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22066" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22080" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22103" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="22997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22146" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22166" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22480" stop="22553"/>
              <exon start="22787" stop="23367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22542" stop="22553"/>
              <exon start="22787" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22787" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22860" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22922" stop="23353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATCCAATTAATTTGATATTTACGAAGTATCTTCTCCTAATAATATTCGACTCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG : TAACTTTGTAA : AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG : GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG : TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG : GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> A  N  P  I  N  L  I  F  T  K  Y  L  L  L  I  I  F  D  S  I  T  I  S  T  Y  F  L  L  H  Q  V  S  F  L  H  R  L  I  P  K  Y  I  N  S  P  I  L  T  I  E  I  P  I  S  I  L  H  S  F  A  S  F  V  A  S  :  *  L  C  K :   V  W  A  I  Y  W  A  V  Y  K  L  I  N  P  P  S  Q  L  Q  S  S  L  A  S  I  K  M  C  F  S  Q  V  A  T  A  C  L  G  A  S  D  S  S  *  L  A  I  S  P  S  G  C  N  N  W  M  F  A  A  R  Q  R  Q  R :   I  M  C  L  S  M  L  W  H  Q  F  S  T  V  P  W  Q  T  K  Q  M  M  L  S  T  N  *  A  T  L  R  V  K  F  R  P  M  F  L  M  :  S  L  E  Q  V  F  Q  N  S  I  L  M  M  F  S  S  R  K  M  K  L  P  R  L  S  R  M  N  L  R  R :   L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </first_frame>
            <second_frame>  P  I  Q  L  I  *  Y  L  R  S  I  F  S  *  *  Y  S  T  P  L  Q  F  P  H  T  F  F  F  I  K  S  L  S  S  I  D  L  S  P  N  I  *  T  H  P  S  *  L  S  K  Y  P  F  R  F  F  T  P  S  L  A  L  L  L  R :   N  F  V   : K  Y  G  Q  S  I  G  L  C  T  S  *  S  I  H  R  R  N  Y  R  A  V  W  Q  V  S  R  C  A  S  A  R  L  P  L  P  A  L  V  L  R  I  P  V  S  W  P  S  L  P  Q  G  A  T  I  G  C  S  L  R  D  K  D  K   : G  *  C  V  C  Q  C  C  G  I  N  S  V  P  C  P  G  R  Q  S  K  *  C  F  L  Q  T  K  Q  H  *  G  S  N  S  G  L  C  F  *  C :   H  *  S  K  C  S  K  T  Q  S  *  *  C  F  R  A  E  K  *  N  C  Q  G  C  R  G  *  T  *  E   : G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </second_frame>
            <third_frame>   Q  S  N  *  F  D  I  Y  E  V  S  S  P  N  N  I  R  L  H  Y  N  F  H  I  L  S  S  S  S  S  L  F  P  P  *  T  Y  P  Q  I  Y  K  L  T  H  L  N  Y  R  N  T  H  F  D  S  S  L  L  R  *  L  C  C  F   : V  T  L  *  :  S  M  G  N  L  L  G  C  V  Q  V  D  Q  S  T  V  A  I  T  E  Q  F  G  K  Y  Q  D  V  L  Q  P  G  C  H  C  L  P  W  C  F  G  F  Q  L  A  G  H  L  S  L  R  V  Q  Q  L  D  V  R  C  E  T  K  T  K  :  D  N  V  F  V  N  V  V  A  S  I  Q  Y  R  A  L  A  D  K  A  N  D  A  F  Y  K  L  S  N  T  K  G  Q  I  Q  A  Y  V  F  D   : V  I  R  A  S  V  P  K  L  N  L  D  D  V  F  E  Q  K  N  E  I  A  K  A  V  E  D  E  L  E  K  :  A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21689" stop="21880"/>
                    <exon start="22054" stop="22174"/>
                    <exon start="22274" stop="22365"/>
                    <exon start="22457" stop="22553"/>
                    <exon start="22787" stop="23145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGNLLGCVQVDQSTVAITEQFGKYQDVLQPGCHCLPWCFGFQLAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKGQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20759" stop="20953"/>
                    <exon start="21387" stop="21389"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANPINLIFTKYLLLIIFDSITISTYFLLHQVSFLHRLIPKYINSPILTIEIPISILHSFASFVAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="22455" e_stop="22553"/>
            <exon e_start="22787" e_stop="23367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22455" e_stop="22553" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="22787" e_stop="23367" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22455" stop="22553"/>
              <exon start="22787" stop="23364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22480" stop="22553"/>
              <exon start="22787" stop="23367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22542" stop="22553"/>
              <exon start="22787" stop="23073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22787" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22813" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22860" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22922" stop="23353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278994" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTAATTGTACCTG</gDNA_template>
            <first_frame> R  L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  N  C  T   </first_frame>
            <second_frame>  G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L  I  V  P  </second_frame>
            <third_frame>   A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R  *  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22457" stop="22553"/>
                    <exon start="22787" stop="23145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 221 chains have been computed
$ 
$ memory statistics:
$ 300080 bytes spliced alignments in total
$ 142 spliced alignments have been stored
$ 2113 bytes was the average size of a spliced alignment
$ 17488 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2498 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 235 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:20:25
-->
