<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:20:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318152" ref_strand="+" ref_description="SGN-U318152        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT3G03980.1 | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, similar to short-chain type dehydrogenase/reductase SP:Q08632 (Picea abies) | chr3:1031749-1033214 FORWARD | Aliases: T11I18.9, T11I18_9 (evalue: 9e-90, score=326) genbank/nr: short(evalue: 1e-119, score=432)">
      <seq>tagcaattagtgtgttttctcttcagcaatggcagcagaaaacgtagcccaatcaaccttcccactccaagatcgtgtggccattgttaccggttcttctcgcggaatcggcaaagcaattgcacttcatttggcctcacttggtgctaaactcgtcatcaactattcctccaactccactcaagctgacgacgtcgtatcccagatcaattccacctccggttacccacgtgccattgcggtcaaggccaatatctcagatccagatcaagtgaaatccctctttgacgctgctgaatcggcttttcaatcgccggtcaacatcctggtaaactccgccggggtactcgacggaaaatacccgtcaatcctaaacacaaccctagaggatttcgacaggacttttgatgtgaacgctcgtggagctttcgtatgctgcaaggaaggtgctaagagaatcaaacacggtggaggagggaggattatatgcttatcgacgtccttagcagcggcgtttagacctggatacggagcgtacatcgcttcaaaagcggccgtggaagcaatggtgaagatactggcgaaggaactgaaagggacaggaataacggtgaattgtgtggcgccgggacccatagcgacggaattgttctacgaagggaaaacagaggccatgataaagagggtgattgatgattgtccacatggaagacttggcctgccggaggatatcgcgccggtggttgggtttttggccggcgacacttctgaatgggttaatggacagatcattcgtgtcaatggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1468" stop="2874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1768" g_stop="2574" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-U318152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1768" e_stop="2574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGG</genome_strand>
        <mrna_strand>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318153" ref_strand="+" ref_description="SGN-U318153        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G03980.1 | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, similar to short-chain type dehydrogenase/reductase SP:Q08632 (Picea abies) | chr3:1031749-1033214 FORWARD | Aliases: T11I18.9, T11I18_9 (evalue: 1e-90, score=330) genbank/nr: short(evalue: 2e-132, score=474)">
      <seq>cacttttcgtttgtttatccacaaaattccattttctagcaatttcagtgcttttcttcagtgatcatggcggaaacaaacgtagcccaaggccaaagcctcgggaatcgtgtagccattgttaccggctcttctcgcggaatcggcaaagcaattgctcttcacttggcctctctcggagctaaactcgtcatcaactacacttccaactctactcaagctgacgacgtcgtatcccaaatcaattccacctccgattccccacgcgcaatcgccgtcaaagccaatgtctccgatccaaatcaagtcaaatccctcttcgacgctgcagaatcagcctttcaatcgccggtcaacatcctcgtcaattgcgccggcgtactcgacgggaaatacccgtcgatcctaaacacaaccctagaggatttcgacaggactttcgatgtgaacgtgcgtggagctttcatatgctgcaaagaaggcgctaatagaatcaagcgcggaggaggcggaaggattatatgcttaacgtcgtcgatggcggtggcgttgaggcccggattcggggcgtacgcggcgtcaaaggcggccgtggaagcaatggtgaaaatactggcgaaagaactgaaagggacagggataacggtgaattgtgcggcgccgggacccattgcaacggatatgttttacgaagggaaaacggaggagatgattaagaaggcgattgatgagtgtccacatggaaggcttggactgccggaggatgtggcgccggtggttgggtttttagccggcgatgcttctgaatgggttaatggacagattattcgtgtcaatggcggttatatttgatactagtatatgttcgttttatttcgttttttatttggcatttcctttgaaatattgttataatcaatatttttaacctgaaataaggtaaaaatttaataatacaattcaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4833" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5133" g_stop="6110" g_length="978"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="978" r_length="978" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-U318153" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5133" e_stop="6110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTAAATAATACAGTTCAATTTGAAGTCTAAAT</genome_strand>
        <mrna_strand>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTTAATAATACAATTCAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334516" ref_strand="-" ref_description="SGN-U334516        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: AHA11 | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to P-type H(+)-transporting ATPase from Nicotiana plumbaginifolia (SP:Q08435, SP:Q08436), Lycopersicon esculentum (GI:5901757, SP:P22180), Solanum tuberosum (GI:435003); contains InterPro accession IPR001757: ATPase, E1-E2 type | chr5:25176456-25183574 FORWARD | Aliases: MRG21.9, MRG21_9, AHA11(evalue: 3e-85, score=312) genbank/nr: gi|9789539|gb|AAF98344.1| plasma membrane H+-ATPase [Lycopersicon esculentum] >gi|5901757|gb|AAD55399.1| plasma membrane H+-ATPase isoform LHA2 [Lycopersicon esculentum] (evalue: 8e-91, score=337)">
      <seq>attgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcgatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctttggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaaatcttggttcatctttcctgctttcatgtcttgactacattatatatgttacaattgaccaagaatgaatattaagctataacagcattcattatctatattctcaagagtttttatttcatggtttagcagcatctgatttttgtactgcttcaatcggattcattgattaaagaagtttggctttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12809" stop="11047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12589" g_stop="12578" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12497" g_stop="12315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="195" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12230" g_stop="12052" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="374" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11792" g_stop="11346" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="821" r_length="447" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="837"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-U334516" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334516" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12589" e_stop="12578"/>
          <exon e_start="12497" e_stop="12315"/>
          <exon e_start="12230" e_stop="12052"/>
          <exon e_start="11792" e_stop="11346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTC-TATTCATTGATTAAAGAAGTTTGGCTTTTTT</genome_strand>
        <mrna_strand>ATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCGATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTTTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAAATCTTGGTTCATC-TTTCCTGCTTTCATGTCTTGACTACATTATATATGTTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGATTTTTGTACTGCTTCAATCGGATTCATTGATTAAAGAAGTTTGGCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313650" ref_strand="+" ref_description="SGN-U313650        Tomato 200607 #1 [47 ESTs aligned] arabidopsis/peptide: | Symbol: AHA11 | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to P-type H(+)-transporting ATPase from Nicotiana plumbaginifolia (SP:Q08435, SP:Q08436), Lycopersicon esculentum (GI:5901757, SP:P22180), Solanum tuberosum (GI:435003); contains InterPro accession IPR001757: ATPase, E1-E2 type | chr5:25176456-25183574 FORWARD | Aliases: MRG21.9, MRG21_9, AHA11(evalue: 0, score=1566) genbank/nr: gi|9789539|gb|AAF98344.1| plasma membrane H+-ATPase [Lycopersicon esculentum] >gi|5901757|gb|AAD55399.1| plasma membrane H+-ATPase isoform LHA2 [Lycopersicon esculentum] (evalue: 0, score=1673)">
      <seq>ctgaggtgttagatgctgtattaaaggagactgtggatttggagaatatacccattgaagaagtttttgaaaatttgagatgtaccaaagagggtcttactggtacagctgcccaagaaaggttggcaatttttgggtacaacaaactagaggagaagaaggagagcaaattcttgaaatttctggggtttatgtggaaccccctctcatgggttatggaagctgctgctattatggcaattgctcttgcaaatggaggaggaaagcctccggattggcaagattttgtgggtattattaccttgctagtgattaactcaacaattagttttattgaggagaataatgctggcaatgcagcagctgctctcatggctcgtctcgctcctaaagccaaggttcttcgagatggaaaatggaatgaagaagatgctgctgttcttgttcctggggacattatcagtattaaactgggagatattattcctgcagatgctcgtcttcttgaaggtgatcccctgaaaattgaccagtctgctttgactggtgaatctcttcctgtaactaaaggtcctggagatggtgtctactctggttctacctgtaagcagggagagatagaagctgtcgtcatcgccactggggttcataccttttttgggaaggctgcacaccttgttgacagtacaaatcaagtgggacacttccaaaaggttttgactgctattggaaacttctgcatctgttctattgcagtggggatgataatagagatcattgtgatgtaccctatccaacaccgcaaatatcgccctgggattgacaatcttcttgtccttctcattggtggaattccaattgccatgccaacggttctttcagtcacgatggcaattggatctcatcggctcgctcaacagggtgctattacgaaaagaatgacagctattgaggagatggctggtatggacgtgctttgtagtgacaagacagggacccttacactaaacaagcttactgttgacaaaaaccttgttgaggtttttgccaaaggtgttgacgcagatactgtcgttctgatggcagctcgagcgtctcgtacagagaaccaggatgccattgacactgctattgttgggatgttgtctgacccgaaggaggctcgtgctggcattcgtgaaatacactttcttcctttcaatccaactgacaagcgtacagcgcttacttatcttgatggtgaaggaaaaatgcacagggtcagcaaaggggcaccagagcagatcctaaatcttgcacacaacaagtcagacatagaacgtagagttcatgcggtgattgataagtttgctgagaggggtttgcgctcacttggtgtggcctaccaggaagttccagagggaaggaaggagagttccggaggaccatggcaattcattggtctcctgcctttgtttgatcctccaagacacgacagtgctgagactataaggagggctttgaatcttggagtgaatgttaaaatgatcacaggggatcaactggctataggaaaagaaacagggcgtcgtctgggaatgggaaccaacatgtatccttcatctgctctgttggggcagactaaggatgaatcaattgcttctttaccaattgatgaactgatagaaaaggctgatggttttgctggagtattccctgagcacaaatatgagattgtaaaacgcttgcaagctaggaagcatatctgtggaatgactggagatggagtcaatgacgctcctgctttaaagaaggctgatattgggatagctgttgatgatgccactgatgctgctcgtagtgcttctgacattgttcttactgaacctggtctcagtgtcatcattagtgctgttctgactagtcgagcaatctttcaaaggatgaaaaactatacgatatatgctgtttccatcacaatccgtattgtgcttggttttatgcttctggcccttatctggaagtttgactttccacctttcatggtgcttatcattgcaatcctcaatgacggtaccattatgacaatatcaaaggatagggtcaaaccatctcctctgcctgatagttggaagctggctgagattttcactactggggttgttcttggtggctacttggcaatgatgacagtcattttcttttgggcagcatatgagacagatttcttcccgcgtgtatttggggtatcaacacttcagaggacagcaactgatgacttcaggaaacttgcatcagcaatttaccttcaagtgagcactatcagtcaggccctgatatttgtcacaagatctcgaagttggtcgtttgttgagcgtcctggtttgttgcttgtggttgcttttctgattgctcaactggttgccaccttgattgctgtttatgcaagttggagctttgctgcaatcgaaggaattggctggggttgggcaggagtgatctggctctacaatttagtattctacttcccgcttgatatcatcaagttcttaatcagatatgctctcagtggaagggcctgggatcttgttcttgagcaaaggattgctttcaccaggaagaaggatttcggaaaagaacaacgtgagcttcaatgggcccacgcacagaggacccttcatgggctgcaagttcctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtttaaaagtgccttatatattttatacatttttttgctttgaattcttggttcatcttttcctgctttcatgtcttgactacattatatatattacaattgaccaagaatgaatattaagctataacagcattcattatctaaaaaaaaaaaaaaaaaaaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18795" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
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          <gDNA_exon_boundary g_start="18495" g_stop="18455" g_length="41"/>
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            <donor d_prob="0.283" d_score="1.00"/>
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          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18239" i_stop="17871" i_length="369">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17870" g_stop="17772" g_length="99"/>
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        <intron i_serial="3">
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            <donor d_prob="0.984" d_score="1.00"/>
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        </intron>
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          <gDNA_exon_boundary g_start="17685" g_stop="17548" g_length="138"/>
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        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17547" i_stop="17402" i_length="146">
            <donor d_prob="0.995" d_score="1.00"/>
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            <donor d_prob="0.999" d_score="1.00"/>
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        </intron>
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          <gDNA_exon_boundary g_start="17176" g_stop="16997" g_length="180"/>
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        <intron i_serial="6">
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            <donor d_prob="1.000" d_score="1.00"/>
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            <donor d_prob="0.991" d_score="1.00"/>
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            <donor d_prob="0.983" d_score="1.00"/>
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            <donor d_prob="0.893" d_score="1.00"/>
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            <donor d_prob="0.993" d_score="1.00"/>
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            <donor d_prob="1.000" d_score="1.00"/>
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            <donor d_prob="0.972" d_score="1.00"/>
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          <gDNA_exon_boundary g_start="14607" g_stop="14369" g_length="239"/>
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        <intron i_serial="14">
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            <donor d_prob="0.848" d_score="1.00"/>
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          <gDNA_exon_boundary g_start="14182" g_stop="14150" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1938" r_stop="1970" r_length="33" r_score="1.000"/>
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        <intron i_serial="15">
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        <exon e_serial="16">
          <gDNA_exon_boundary g_start="14059" g_stop="13978" g_length="82"/>
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        <intron i_serial="16">
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            <donor d_prob="0.994" d_score="1.00"/>
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            <donor d_prob="0.991" d_score="1.00"/>
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        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3117" polyA_stop="3144"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-U313650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3116</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
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          <exon e_start="14182" e_stop="14150"/>
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          <exon e_start="11792" e_stop="11438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTGGTAATGGATCTGACTAAAAAGATCAAATTTTTGAACTTATATTTCGTTGGTTTTAATGGGTTTGTTTCCTTTTTTTGTTGGTGTTGTAATTGCAGGAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAGGTGTGGTGATGATTACTCTTTTTTTTTTTCCTTTTTGTAGAATTGTTCCTTTTCTTGTTTTTTTGATTCCCTTGCTGGTCCACTTTGAACTGAATCTCTGTATATTCTCTTCCTTTTTTGATTTGGTACTTTGATGGGTTAGTTTTCTTTTTTTTTTGTTGCTGAAATGTTTCCTCTTTTCTCCTTTTGTTTTCTTTGGATATCTTGTCTGTCTTGTTTGGACTTTGAATGGACTCTTTTTAGCTGAAAATTAGATGTCTTTAGTTGAACTAAGCTGAATTGATGGAGAATTTGATGCTTAAGTTTTTGACGTGAAAGTTAAAAGTGAACTGTTATCATTGTTGAGTGTTATTGTTTGCTGTGTTATAGGAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGAGTAAGTGCTAACAAGCTGATTTACCTTTATATTGGACAATATGCTGGTTCTTTTGACTTAAATTGAATATATGTCGAATTTTGTAGGGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAGGTTCTAGATTCACCAACCATCATTGTTATTCAATTGCTATTAGACAGCATGTGAAAGTTGTTAACTTTCATAATTTTGATGGGAAGTATGAGGTTGAGAAACTAATGGAAAGTTGTCTTAATTGTTTGCTCTTGTGATATATGCAGGTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAGGTGATTAAGTTTTTACGATTTAATAAGTGGTTGCTCACTGCATTCAATATTTTGTTTAACTGTGGCACTGATATTATCTATTACTTGCAGTCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAGGCAAGTTGAACTTGTATTGTCTTATTTGTTTTGAATATTAGTTGATAATCTCATTCTTTTAAATCTCACATTCAATGTTGTTGATGTCTCTATCAGGTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAGGTTTGTTAGTTAGCATCTTGATCTTAGGATGTGGTGTTTCAGCATGTCTTCAATCGTGAGTTATTGTAGTTCAACAGTTCTGATAAGCGATTGCATATTTCATCATTTTAACTATTCAGGGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAGGTGAGAATAAGAGTTCAGTCTTGTGTTTATTCCTTATTCCACACCGATTCTGATTTTCTTGTTTGTTCCTGCTAAATTATCAGGTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAGGTAACTTTAGAATTGCATGACTGTGTGATTGGTGTATCCATTTTAGCTAGAGAACTGTTCTAATGCTGCCATTAATGCAGGCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAGGTATGACTGTGATCATCTAAGTAGTCCTTCTTTGCTTGCTTTTACTTTCCGTGATTGCATTTTCTAACCAATCACTGCAATTTGGATTAGATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAGGTATTTTGCTTTCCTTTTATCATCTGTGGAACTCATCATGTCATATATAAATTGAAAGAATCAATTATCTTGCAGCTTAAGCATATAACCTATACTATTATAGTGGAGAGGAGGGATTAATTATCTCTGTCTCCAAGTTCTATCATTGTGTCGAAAAAATAGAGCTTTATTTCGCTTAATCACATATACCCTAACTTCCCATGCAGGAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAGGTATTTCTAATTTTTTCATTTTTTATGATCAATATATTGAAAAATTGTTGGCAAATAGACTGCATGCTATATTGGCAACTTGGTAGTAATGGCTACCCAACCCCTTAATAAAAGGAAGAGAGAAAGGAAAAATGTATCCAGTGAGTAGAGGTTTCCAAAATTATCACCAACTTGAGATGGTAATGCAGTCTGCTAGTAATTCTTTGTACACTGAGCTTGTTGGCTGTTGCATCAAAGACTACTTTTGATTCGTTCCGATATTGGGACTGTGCCTTTTTGTTTTTGATTTTTGGTGAGGACAATATTATAGTGGTACTGGGTTATGTCTCATTTTAGAGGCACCGCCTGGTCTTATTGACTTAAAGTGATGTCTCTGCCCGTCGCTTGGCATTTTCATTTATTGTGTTGATAAGGATTTCAGGCTTTCACAATTGAATTTTAAATACTATTACTTTGTGTTTGTCAACTTGTGTTTTACCAAGATATTGCTTTTTGATGTAAAAAGCTCAGATGTAATTTGGACATGTATCATCTTACTGGTACTGCGTCTTTTGCTACATCAAAGTTCGACATGTTTATGTGCCTGCTTAAATTTCTTGATGTCTGTTCTTTTGGCAGGGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTGGTATATCCCTCTCAGAAAATTCTTTTACTTCTCTACTTTTGGGTATTCAATAGGGTATTTGTTTATCGGAATGTTCGTCTTTACTGATACCTTGTCTTGCTCATTGCCTTAGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACGGTATATATTTTTCTTGTTGGGTTACTAGAGGCGTATATTTAAATCCTTATACATCCTACATTTTTGGTATATCATAGCAGCTGTTATTTTGAGGGTAGTGTATTCCTGAATGAGCTTAATGCACTTACAATCTGTCTCTGATGCACAATATTGATAATTTATCTGTCTTTTTTTTTTCATCGGCAGATATATGCTGTTTCCATCACAATCCGTATTGTGGTATGTTTTTTGGCTGCTGCTTCTTCTTTTCTCTTTAATTTTATGATTCTTAAATGATATTTTGACATTCTTCTTCTATTTTTGTTACAGCTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACGGTTGGTCCTTTTCACCAATAGTAACATAGACGATGTTTAGTTTCAACATTCCGTCATTTTAATAAACCACTAATTTTTCTGTAAGATGAAATTTGAGGGTATTGAAATGAAACATGCTTGTATTATACAAAATTAAAATTAAAAAGGGCTAGAAGTTCTCTATATTTTCTGATGGCTTATAAATCTCTGACATGAATAAAAGATCATAGAGAGTATAGGACCTAAAGTAAACATACTAACATGTGATATTTTTCCAATTAATTATTCCCCCATCCGGTTCATAGTAATTTATTATGTTGGGAATAACACCTACTCATGTGGTATAAGAAAAGTAAAAAACCTATTAAAGAAAAAATGATATTCTACAAAAGACATCCAATCTTTAATTCAAATCGGAACCCCATGGATGCACCAAAGAGAAATAGAAATAAGAGGCTACTCCTCACATGTACAAAATCATTTTTCATTTCATCAAAAGCTCTTCTATAAAGTTTAGTATGATCTGCCACTGCAGTGTTTAGTTAGTTCTCTTGCCGTTCTAGTGTCTTTTCTACGTCTCACTTCTAATGTTATGATCTCAGGTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCGGTGAGCATATGAGTTTCCTGTATAATATCAATAAATTTGTTCAGTTTTGACATGACAATGAACAGACACAATATTCACAAAAAAGATGCAGGTAGTTTGAGATGTAGCTGTTATGTATTATGTAATAAGAACTAATGAAGGAATGTTTAGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAATGTTTGGCCGCACAGACTGGTTATGTATTATATAATAAGAACTAATGAAAGAGTGTTTGGCCGCACAGACTGGTCATCTTTTATCTGTGAAAAACTATGGAGGACTTTCATCTTACCTGTGCAGCAGAACTTTGTTAATAGTGTTGTTATGATAACTAACTGTATATTAAACTAAATGATCTGTTGACTTTGCTGCTTGGATTGTTGAAAGTTGAACTGGCGTTAATTATGAACTGTTCTTAGTTTGTAATCTCACTCAGTTTGGTGATTGTCCAGCGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTGGTAAGCCATTTGCTCATTCATTCTGGCAAACTTTCCACAACTTGATCAATCTATAATGTTTGGTTGCTAATTTTAAACAGGTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGGGTATGTGATACAGTAGAGATATACATATATGATATATATTCATTCTCATGCTAACGGTATGTGACGGGTTTCTTTGTATTACAGATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</genome_strand>
        <mrna_strand>CTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG...............................................................................................GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA......................................................................................GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG..................................................................................................................................................GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG..........................................................................................TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG................................................................................................GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG.......................................................................................................................GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG...................................................................................GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG................................................................................GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG..........................................................................................ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG..............................................................................................................................................................................................................GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG................................................................................................................AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG..........................................................................................................................................................................................ATATATGCTGTTTCCATCACAATCCGTATTGTG..........................................................................................CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG................................................................................GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG....................................................................................ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334515" ref_strand="+" ref_description="SGN-U334515        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: AHA11 | ATPase, plasma membrane-type, putative / proton pump, putative, strong similarity to P-type H(+)-transporting ATPase from Nicotiana plumbaginifolia (SP:Q08435, SP:Q08436), Lycopersicon esculentum (GI:5901757, SP:P22180), Solanum tuberosum (GI:435003); contains InterPro accession IPR001757: ATPase, E1-E2 type | chr5:25176456-25183574 FORWARD | Aliases: MRG21.9, MRG21_9, AHA11(evalue: 3e-14, score=76.3) genbank/nr: gi|9789539|gb|AAF98344.1| plasma membrane H+-ATPase [Lycopersicon esculentum] >gi|5901757|gb|AAD55399.1| plasma membrane H+-ATPase isoform LHA2 [Lycopersicon esculentum] (evalue: 2e-16, score=89.7)">
      <seq>ctgacaccaaattgtttagtgaagctaccaatttcaatgagcttaatcagttagctgaggaagcaaagaggagagctgaaatcgctaggcaacgtgagctgcacacacttaaaggtcacgtggaatcagtggtgaagttgaagggtcttgacatagagacaattcagcagtcatacactgtttgatgtgggagcaagtatgactagtgctacttaactggtgagtgggtgatagaatgaagacataatgagtgtgtgagttacctctggagcgacaagttcatagtagtaacatcttcagcgtataaaatatatctagatattttatacattgttgtgctttgaattctgggttcatcttttcctgcttttatgtattgactacattatatatattacaatggaccaagaatgaatattaagctatatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="-" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12439" stop="11149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12052" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11792" g_stop="11449" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="432" r_length="344" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="-" ref_id="SGN-U334515" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12052"/>
          <exon e_start="11792" e_stop="11449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAGGTAAAGATTGTCATTTTGAATTTTTTTTATTTTTTTTGACAACAGAAGTACAGTAGTTTCTGCTTATGTTTCTAGTTGGGTGTGAAGTTGAACTTGTATTTGTGGGCATTTCATTCTTCTCCCTTTACTCATATGGCCATGCTACAACATCCCATATCCATTGCTTGCTTCACTTTATCTTTACTAAGCTTTCTTCAGCTAAACACATGTTGATTTTTCGTGACTTCTTGGAAATTGAACACTACATTTTTCATTGCAGGCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGC</genome_strand>
        <mrna_strand>CTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG...................................................................................................................................................................................................................................................................GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTATAAAATATATCTAGATATTTTATACATTGTTGTGCTTTGAATTCTGGGTTCATCTTTTCCTGCTTTTATGTATTGACTACATTATATATATTACAATGGACCAAGAATGAATATTAAGCTATATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313962" ref_strand="+" ref_description="SGN-U313962        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: AT5G62740.1 | Symbol: None | band 7 family protein, strong similarity to hypersensitive-induced response protein (Zea mays) GI:7716470; contains Pfam profile PF01145: SPFH domain / Band 7 family; supporting cDNA gi:17065547:gb:AY062850.1: | chr5:25218173-25219982 FORWARD | Aliases: MQB2.40, MQB2_40 (evalue: 5e-143, score=504) genbank/nr: gi|46452120|gb|AAS98165.1| hypersensitive-induced reaction protein [Capsicum annuum] (evalue: 6e-145, score=516)">
      <seq>tccattacaatttccacatactttcttcttcatcaagtctctttcctccatagacttatccccaaatatataaactcacccatcttaactatcgaaatacccatttcgattcttcactccttcgctagctttgttgcttcgagtatgggcaatctattgggctgtgtacaagttgatcaatccaccgtcgcaattacagagcagtttggcaagtatcaagatgtgcttcagccaggttgccactgcctgccttggtgcttcggattccagttagctggccatctctccctcagggtgcaacaattggatgttcgctgcgagacaaagacaaaggataatgtgtttgtcaatgttgtggcatcaattcagtaccgtgccctggcagacaaagcaaatgatgctttctacaaactaagcaacactaagggtcaaattcaggcctatgtttttgatgtcattagagcaagtgttccaaaactcaatcttgatgatgttttcgagcagaaaaatgaaattgccaaggctgtcgaggatgaacttgagaaggctatgtcggcttatggatatgaaattgttcaaacacttatagttgatatagaaccagatgagaatgtgaagagagctatgaatgaaatcaatgctgctgctcggctgagggtggctgctaatgagaaagcagaggcggagaagattttgcaaattaagagggctgaaggagaggcagaatcaaagtatctttcagggttaggtattgcacgacagcgtcaagcgattgtggatggtttgagagacagcgtgctcggattctcagtgaatgtgcctggaacctcagcaaaagatgtaatggacatggtccttttaacccagtactttgacaccatgaaagaaattggcgcttccagtaaatcatctgctgtcttccttcctcatgggcctggtgctgtaagagatgtggcaagccagatccgcgatggactccttcaagcttctgtgaaccattaaatgtttctactatatcagaaatgttaattgtgtttcacttgaagcagcctttttcattttgtgtttactttctgttagtgtggatatgtttggcgagtttgactttgtatttgtgaatgcctctagtatcttatattgtaaagaatttaatatcccagacctttgaagaattatatactattaatagatggatgtgatatttctcctcgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0125P18-HdU3Z/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0125P18.2" temp_strand="+" temp_description="C06HBa0125P18.2  AC211051.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0125P18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20513" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20953" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21689" g_stop="21880" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="333" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22054" g_stop="22174" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="454" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22274" g_stop="22365" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="546" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22457" g_stop="22553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="643" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22787" g_stop="23357" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="1214" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1215" polyA_stop="1242"/>
      <MATCH_line gen_id="C06HBa0125P18.2" gen_strand="+" ref_id="SGN-U313962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1214</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0125P18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20953"/>
          <exon e_start="21689" e_stop="21880"/>
          <exon e_start="22054" e_stop="22174"/>
          <exon e_start="22274" e_stop="22365"/>
          <exon e_start="22457" e_stop="22553"/>
          <exon e_start="22787" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCGGTATGTTTATGTACATATGCACATACTTTATACAATTTCAATTTTTCTATTTGTTCTTATAGTTTAATCGTTTTTGTGTTAAGACCTAATGTGTGAAGGAAGACTTGCTTGCTAGTTTGATCTAGGTCAACTCTGTATACTTTCAAATTAAAATTTTGATATTTCGAAAAATGTCACATGAATTGGGGAGGGGACAGTAGTTATAAGCAGAAAAGTGTTGTTCTAGTTTCTTTAATGCCATGAAATTTAGTTTATAGCCTTGTTGGATTGGGTGTTGGATTATGGGTTTGATAAGGTAAAGTGGGTTGAGAAATTTGACAGCAGAATTTAACTTTGCCTTTTATAGATGAATATTGAAAACAACAATTGAACTGGTGATATTGTCATTTAATCTTTTCTTAGTTAACTGGGAGAGTTTATTGCTGATGTTCAGTAACTTTGTAAAAGAAACTAGAGTAGCAGTTGCTCCCTAAAGTGTGACTTAACAGTTTGTAATCTTTAGTTCCAGGGAGAAGTTCGAGAATATTACCCTTTTTGGATTTGTGAACTTGAGGTGTCCCAAGTGTAATTTGTAAAGTGTAAACTAACTATTGTGTTCTTTTCGTTTTAGAATTTGTTACTCGTTTAAATTGCTCCTTTATAATGACAGGTTCTGATGGTGTAATATATCATTTTTTGAGTTTGTTTTATGGGTGACTTCTGTGAATAATCTTCCTTTTCATGCAATCGTTGCAGAGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAGGTCTATTCTTTATTCCGAAACAGTAATTCCATTGTTTTGACACAAGCTGTGTTGGTTCGCAGCCAAATCATCAAAGTCAACCACAATTTGCACTTTAACAAACATAACTAGGTGATGATTTTTCAGTATTTATGCATATTAATGACTTAATACATATTGCAACAAATGTGCAGGATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATGGTAGATATTTAATCTGTCTGTTTATATACTATTTCTGAGAATAAATTGATTTCAATGGGTAATGCTAACTTACACAAATCTATGTTTATATTTTGTCAGTCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAGGTAAGCCGATTCTTCAATGTTTTCTTAATTGATACAGGCAATTTGAATTTTTCATTGGATCTCATATGTATGTCATTATGATCCTTTATAGGCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTGGTATGGCTAAAATCTCATCTCTTTAGTTAAGCCTGATGCCTGCTGGTTCTCAACTGCTCTGACTAGTTAGTACTTTGTCCAAGAGGACTATATACATCAGTTGATGGAGGGGGCTACAGTGGGATTCGAACCCACCATCACTAGTGTGAAGGTGTGGGCAGCTCCCCAACTGAGCTACAAGCCACACTATAAAAGAGTATCTTTTCATGTCCTAATTGTTTTCAATTCTACAGCTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</genome_strand>
        <mrna_strand>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG.............................................................................................................................................................................GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG...................................................................................................TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG...........................................................................................GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG.........................................................................................................................................................................................................................................CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1768" PGL_stop="2574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1768" e_stop="2574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1768" e_stop="2574" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1768" stop="2574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCAATTAGTGTGTTTTCTCTTCAGCAATGGCAGCAGAAAACGTAGCCCAATCAACCTTCCCACTCCAAGATCGTGTGGCCATTGTTACCGGTTCTTCTCGCGGAATCGGCAAAGCAATTGCACTTCATTTGGCCTCACTTGGTGCTAAACTCGTCATCAACTATTCCTCCAACTCCACTCAAGCTGACGACGTCGTATCCCAGATCAATTCCACCTCCGGTTACCCACGTGCCATTGCGGTCAAGGCCAATATCTCAGATCCAGATCAAGTGAAATCCCTCTTTGACGCTGCTGAATCGGCTTTTCAATCGCCGGTCAACATCCTGGTAAACTCCGCCGGGGTACTCGACGGAAAATACCCGTCAATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTTGATGTGAACGCTCGTGGAGCTTTCGTATGCTGCAAGGAAGGTGCTAAGAGAATCAAACACGGTGGAGGAGGGAGGATTATATGCTTATCGACGTCCTTAGCAGCGGCGTTTAGACCTGGATACGGAGCGTACATCGCTTCAAAAGCGGCCGTGGAAGCAATGGTGAAGATACTGGCGAAGGAACTGAAAGGGACAGGAATAACGGTGAATTGTGTGGCGCCGGGACCCATAGCGACGGAATTGTTCTACGAAGGGAAAACAGAGGCCATGATAAAGAGGGTGATTGATGATTGTCCACATGGAAGACTTGGCCTGCCGGAGGATATCGCGCCGGTGGTTGGGTTTTTGGCCGGCGACACTTCTGAATGGGTTAATGGACAGATCATTCGTGTCAATGGCGG</gDNA_template>
            <first_frame> *  Q  L  V  C  F  L  F  S  N  G  S  R  K  R  S  P  I  N  L  P  T  P  R  S  C  G  H  C  Y  R  F  F  S  R  N  R  Q  S  N  C  T  S  F  G  L  T  W  C  *  T  R  H  Q  L  F  L  Q  L  H  S  S  *  R  R  R  I  P  D  Q  F  H  L  R  L  P  T  C  H  C  G  Q  G  Q  Y  L  R  S  R  S  S  E  I  P  L  *  R  C  *  I  G  F  S  I  A  G  Q  H  P  G  K  L  R  R  G  T  R  R  K  I  P  V  N  P  K  H  N  P  R  G  F  R  Q  D  F  *  C  E  R  S  W  S  F  R  M  L  Q  G  R  C  *  E  N  Q  T  R  W  R  R  E  D  Y  M  L  I  D  V  L  S  S  G  V  *  T  W  I  R  S  V  H  R  F  K  S  G  R  G  S  N  G  E  D  T  G  E  G  T  E  R  D  R  N  N  G  E  L  C  G  A  G  T  H  S  D  G  I  V  L  R  R  E  N  R  G  H  D  K  E  G  D  *  *  L  S  T  W  K  T  W  P  A  G  G  Y  R  A  G  G  W  V  F  G  R  R  H  F  *  M  G  *  W  T  D  H  S  C  Q  W  R </first_frame>
            <second_frame>  S  N  *  C  V  F  S  S  A  M  A  A  E  N  V  A  Q  S  T  F  P  L  Q  D  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  S  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  G  Y  P  R  A  I  A  V  K  A  N  I  S  D  P  D  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  S  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  A  R  G  A  F  V  C  C  K  E  G  A  K  R  I  K  H  G  G  G  G  R  I  I  C  L  S  T  S  L  A  A  A  F  R  P  G  Y  G  A  Y  I  A  S  K  A  A  V  E  A  M  V  K  I  L  A  K  E  L  K  G  T  G  I  T  V  N  C  V  A  P  G  P  I  A  T  E  L  F  Y  E  G  K  T  E  A  M  I  K  R  V  I  D  D  C  P  H  G  R  L  G  L  P  E  D  I  A  P  V  V  G  F  L  A  G  D  T  S  E  W  V  N  G  Q  I  I  R  V  N  G   </second_frame>
            <third_frame>   A  I  S  V  F  S  L  Q  Q  W  Q  Q  K  T  *  P  N  Q  P  S  H  S  K  I  V  W  P  L  L  P  V  L  L  A  E  S  A  K  Q  L  H  F  I  W  P  H  L  V  L  N  S  S  S  T  I  P  P  T  P  L  K  L  T  T  S  Y  P  R  S  I  P  P  P  V  T  H  V  P  L  R  S  R  P  I  S  Q  I  Q  I  K  *  N  P  S  L  T  L  L  N  R  L  F  N  R  R  S  T  S  W  *  T  P  P  G  Y  S  T  E  N  T  R  Q  S  *  T  Q  P  *  R  I  S  T  G  L  L  M  *  T  L  V  E  L  S  Y  A  A  R  K  V  L  R  E  S  N  T  V  E  E  G  G  L  Y  A  Y  R  R  P  *  Q  R  R  L  D  L  D  T  E  R  T  S  L  Q  K  R  P  W  K  Q  W  *  R  Y  W  R  R  N  *  K  G  Q  E  *  R  *  I  V  W  R  R  D  P  *  R  R  N  C  S  T  K  G  K  Q  R  P  *  *  R  G  *  L  M  I  V  H  M  E  D  L  A  C  R  R  I  S  R  R  W  L  G  F  W  P  A  T  L  L  N  G  L  M  D  R  S  F  V  S  M  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1778" stop="2572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVFSSAMAAENVAQSTFPLQDRVAIVTGSSRGIGKAIALHLASLGAKLVINYSSNSTQADDVVSQINSTSGYPRAIAVKANISDPDQVKSLFDAAESAFQSPVNILVNSAGVLDGKYPSILNTTLEDFDRTFDVNARGAFVCCKEGAKRIKHGGGGRIICLSTSLAAAFRPGYGAYIASKAAVEAMVKILAKELKGTGITVNCVAPGPIATELFYEGKTEAMIKRVIDDCPHGRLGLPEDIAPVVGFLAGDTSEWVNGQIIRVNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5133" PGL_stop="6110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5133" e_stop="6110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="5133" e_stop="6110" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5133" stop="6110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTTTCGTTTGTTTATCCACAAAATTCCATTTTCTAGCAATTTCAGTGCTTTTCTTCAGTGATCATGGCGGAAACAAACGTAGCCCAAGGCCAAAGCCTCGGGAATCGTGTAGCCATTGTTACCGGCTCTTCTCGCGGAATCGGCAAAGCAATTGCTCTTCACTTGGCCTCTCTCGGAGCTAAACTCGTCATCAACTACACTTCCAACTCTACTCAAGCTGACGACGTCGTATCCCAAATCAATTCCACCTCCGATTCCCCACGCGCAATCGCCGTCAAAGCCAATGTCTCCGATCCAAATCAAGTCAAATCCCTCTTCGACGCTGCAGAATCAGCCTTTCAATCGCCGGTCAACATCCTCGTCAATTGCGCCGGCGTACTCGACGGGAAATACCCGTCGATCCTAAACACAACCCTAGAGGATTTCGACAGGACTTTCGATGTGAACGTGCGTGGAGCTTTCATATGCTGCAAAGAAGGCGCTAATAGAATCAAGCGCGGAGGAGGCGGAAGGATTATATGCTTAACGTCGTCGATGGCGGTGGCGTTGAGGCCCGGATTCGGGGCGTACGCGGCGTCAAAGGCGGCCGTGGAAGCAATGGTGAAAATACTGGCGAAAGAACTGAAAGGGACAGGGATAACGGTGAATTGTGCGGCGCCGGGACCCATTGCAACGGATATGTTTTACGAAGGGAAAACGGAGGAGATGATTAAGAAGGCGATTGATGAGTGTCCACATGGAAGGCTTGGACTGCCGGAGGATGTGGCGCCGGTGGTTGGGTTTTTAGCCGGCGATGCTTCTGAATGGGTTAATGGACAGATTATTCGTGTCAATGGCGGTTATATTTGATACTAGTATATGTTCGTTTTATTTCGTTTTTTATTTGGCATTTCCTTTGAAATATTGTTATAATCAATATTTTTAACCTGAAATAAGGTAAAAATTAAATAATACAGTTCAATTTGAAGTCTAAAT</gDNA_template>
            <first_frame> H  F  S  F  V  Y  P  Q  N  S  I  F  *  Q  F  Q  C  F  S  S  V  I  M  A  E  T  N  V  A  Q  G  Q  S  L  G  N  R  V  A  I  V  T  G  S  S  R  G  I  G  K  A  I  A  L  H  L  A  S  L  G  A  K  L  V  I  N  Y  T  S  N  S  T  Q  A  D  D  V  V  S  Q  I  N  S  T  S  D  S  P  R  A  I  A  V  K  A  N  V  S  D  P  N  Q  V  K  S  L  F  D  A  A  E  S  A  F  Q  S  P  V  N  I  L  V  N  C  A  G  V  L  D  G  K  Y  P  S  I  L  N  T  T  L  E  D  F  D  R  T  F  D  V  N  V  R  G  A  F  I  C  C  K  E  G  A  N  R  I  K  R  G  G  G  G  R  I  I  C  L  T  S  S  M  A  V  A  L  R  P  G  F  G  A  Y  A  A  S  K  A  A  V  E  A  M  V  K  I  L  A  K  E  L  K  G  T  G  I  T  V  N  C  A  A  P  G  P  I  A  T  D  M  F  Y  E  G  K  T  E  E  M  I  K  K  A  I  D  E  C  P  H  G  R  L  G  L  P  E  D  V  A  P  V  V  G  F  L  A  G  D  A  S  E  W  V  N  G  Q  I  I  R  V  N  G  G  Y  I  *  Y  *  Y  M  F  V  L  F  R  F  L  F  G  I  S  F  E  I  L  L  *  S  I  F  L  T  *  N  K  V  K  I  K  *  Y  S  S  I  *  S  L  N </first_frame>
            <second_frame>  T  F  R  L  F  I  H  K  I  P  F  S  S  N  F  S  A  F  L  Q  *  S  W  R  K  Q  T  *  P  K  A  K  A  S  G  I  V  *  P  L  L  P  A  L  L  A  E  S  A  K  Q  L  L  F  T  W  P  L  S  E  L  N  S  S  S  T  T  L  P  T  L  L  K  L  T  T  S  Y  P  K  S  I  P  P  P  I  P  H  A  Q  S  P  S  K  P  M  S  P  I  Q  I  K  S  N  P  S  S  T  L  Q  N  Q  P  F  N  R  R  S  T  S  S  S  I  A  P  A  Y  S  T  G  N  T  R  R  S  *  T  Q  P  *  R  I  S  T  G  L  S  M  *  T  C  V  E  L  S  Y  A  A  K  K  A  L  I  E  S  S  A  E  E  A  E  G  L  Y  A  *  R  R  R  W  R  W  R  *  G  P  D  S  G  R  T  R  R  Q  R  R  P  W  K  Q  W  *  K  Y  W  R  K  N  *  K  G  Q  G  *  R  *  I  V  R  R  R  D  P  L  Q  R  I  C  F  T  K  G  K  R  R  R  *  L  R  R  R  L  M  S  V  H  M  E  G  L  D  C  R  R  M  W  R  R  W  L  G  F  *  P  A  M  L  L  N  G  L  M  D  R  L  F  V  S  M  A  V  I  F  D  T  S  I  C  S  F  Y  F  V  F  Y  L  A  F  P  L  K  Y  C  Y  N  Q  Y  F  *  P  E  I  R  *  K  L  N  N  T  V  Q  F  E  V  *   </second_frame>
            <third_frame>   L  F  V  C  L  S  T  K  F  H  F  L  A  I  S  V  L  F  F  S  D  H  G  G  N  K  R  S  P  R  P  K  P  R  E  S  C  S  H  C  Y  R  L  F  S  R  N  R  Q  S  N  C  S  S  L  G  L  S  R  S  *  T  R  H  Q  L  H  F  Q  L  Y  S  S  *  R  R  R  I  P  N  Q  F  H  L  R  F  P  T  R  N  R  R  Q  S  Q  C  L  R  S  K  S  S  Q  I  P  L  R  R  C  R  I  S  L  S  I  A  G  Q  H  P  R  Q  L  R  R  R  T  R  R  E  I  P  V  D  P  K  H  N  P  R  G  F  R  Q  D  F  R  C  E  R  A  W  S  F  H  M  L  Q  R  R  R  *  *  N  Q  A  R  R  R  R  K  D  Y  M  L  N  V  V  D  G  G  G  V  E  A  R  I  R  G  V  R  G  V  K  G  G  R  G  S  N  G  E  N  T  G  E  R  T  E  R  D  R  D  N  G  E  L  C  G  A  G  T  H  C  N  G  Y  V  L  R  R  E  N  G  G  D  D  *  E  G  D  *  *  V  S  T  W  K  A  W  T  A  G  G  C  G  A  G  G  W  V  F  S  R  R  C  F  *  M  G  *  W  T  D  Y  S  C  Q  W  R  L  Y  L  I  L  V  Y  V  R  F  I  S  F  F  I  W  H  F  L  *  N  I  V  I  I  N  I  F  N  L  K  *  G  K  N  *  I  I  Q  F  N  L  K  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5172" stop="5984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFQCFSSVIMAETNVAQGQSLGNRVAIVTGSSRGIGKAIALHLASLGAKLVINYTSNSTQADDVVSQINSTSDSPRAIAVKANVSDPNQVKSLFDAAESAFQSPVNILVNCAGVLDGKYPSILNTTLEDFDRTFDVNVRGAFICCKEGANRIKRGGGGRIICLTSSMAVALRPGFGAYAASKAAVEAMVKILAKELKGTGITVNCAAPGPIATDMFYEGKTEEMIKKAIDECPHGRLGLPEDVAPVVGFLAGDASEWVNGQIIRVNGGYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18495" PGL_stop="11346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18495" e_stop="18455"/>
            <exon e_start="18359" e_stop="18240"/>
            <exon e_start="17870" e_stop="17772"/>
            <exon e_start="17685" e_stop="17548"/>
            <exon e_start="17401" e_stop="17267"/>
            <exon e_start="17176" e_stop="16997"/>
            <exon e_start="16900" e_stop="16694"/>
            <exon e_start="16574" e_stop="16455"/>
            <exon e_start="16371" e_stop="16252"/>
            <exon e_start="16171" e_stop="16049"/>
            <exon e_start="15958" e_stop="15854"/>
            <exon e_start="15647" e_stop="15503"/>
            <exon e_start="14884" e_stop="14720"/>
            <exon e_start="14607" e_stop="14369"/>
            <exon e_start="14182" e_stop="14150"/>
            <exon e_start="14059" e_stop="13978"/>
            <exon e_start="13396" e_stop="13236"/>
            <exon e_start="12763" e_stop="12578"/>
            <exon e_start="12497" e_stop="12315"/>
            <exon e_start="12230" e_stop="12052"/>
            <exon e_start="11792" e_stop="11346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.283" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18495" e_stop="18455" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.283" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18454" i_stop="18360" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18359" e_stop="18240" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.983">
            <gDNA_intron_boundary i_start="18239" i_stop="17871" i_length="369"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17870" e_stop="17772" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.988">
            <gDNA_intron_boundary i_start="17771" i_stop="17686" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17685" e_stop="17548" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17547" i_stop="17402" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17401" e_stop="17267" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17266" i_stop="17177" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17176" e_stop="16997" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="16996" i_stop="16901" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16900" e_stop="16694" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16693" i_stop="16575" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16574" e_stop="16455" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16454" i_stop="16372" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16371" e_stop="16252" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.893" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16251" i_stop="16172" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16171" e_stop="16049" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.961">
            <gDNA_intron_boundary i_start="16048" i_stop="15959" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15958" e_stop="15854" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="15853" i_stop="15648" i_length="206"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15647" e_stop="15503" e_length="145"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15502" i_stop="14885" i_length="618"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14884" e_stop="14720" e_length="165"/>
          </exon>
          <intron i_serial="13" don_prob="0.972" acc_prob="0.879">
            <gDNA_intron_boundary i_start="14719" i_stop="14608" i_length="112"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="14607" e_stop="14369" e_length="239"/>
          </exon>
          <intron i_serial="14" don_prob="0.848" acc_prob="0.970">
            <gDNA_intron_boundary i_start="14368" i_stop="14183" i_length="186"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="14182" e_stop="14150" e_length="33"/>
          </exon>
          <intron i_serial="15" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14149" i_stop="14060" i_length="90"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="14059" e_stop="13978" e_length="82"/>
          </exon>
          <intron i_serial="16" don_prob="0.902" acc_prob="0.947">
            <gDNA_intron_boundary i_start="13977" i_stop="13397" i_length="581"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="13396" e_stop="13236" e_length="161"/>
          </exon>
          <intron i_serial="17" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13235" i_stop="12764" i_length="472"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="12763" e_stop="12578" e_length="186"/>
          </exon>
          <intron i_serial="18" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12577" i_stop="12498" i_length="80"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="12497" e_stop="12315" e_length="183"/>
          </exon>
          <intron i_serial="19" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12314" i_stop="12231" i_length="84"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="12230" e_stop="12052" e_length="179"/>
          </exon>
          <intron i_serial="20" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12051" i_stop="11793" i_length="259"/>
          </intron>
          <exon e_serial="21" e_score="0.975">
            <gDNA_exon_boundary e_start="11792" e_stop="11346" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18495" stop="18455"/>
              <exon start="18359" stop="18240"/>
              <exon start="17870" stop="17772"/>
              <exon start="17685" stop="17548"/>
              <exon start="17401" stop="17267"/>
              <exon start="17176" stop="16997"/>
              <exon start="16900" stop="16694"/>
              <exon start="16574" stop="16455"/>
              <exon start="16371" stop="16252"/>
              <exon start="16171" stop="16049"/>
              <exon start="15958" stop="15854"/>
              <exon start="15647" stop="15503"/>
              <exon start="14884" stop="14720"/>
              <exon start="14607" stop="14369"/>
              <exon start="14182" stop="14150"/>
              <exon start="14059" stop="13978"/>
              <exon start="13396" stop="13236"/>
              <exon start="12763" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12589" stop="12578"/>
              <exon start="12497" stop="12315"/>
              <exon start="12230" stop="12052"/>
              <exon start="11792" stop="11346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334516" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12052"/>
              <exon start="11792" stop="11449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGGTGTTAGATGCTGTATTAAAGGAGACTGTGGATTTG : GAGAATATACCCATTGAAGAAGTTTTTGAAAATTTGAGATGTACCAAAGAGGGTCTTACTGGTACAGCTGCCCAAGAAAGGTTGGCAATTTTTGGGTACAACAAACTAGAGGAGAAGAAG : GAGAGCAAATTCTTGAAATTTCTGGGGTTTATGTGGAACCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGAGGA : GGAAAGCCTCCGGATTGGCAAGATTTTGTGGGTATTATTACCTTGCTAGTGATTAACTCAACAATTAGTTTTATTGAGGAGAATAATGCTGGCAATGCAGCAGCTGCTCTCATGGCTCGTCTCGCTCCTAAAGCCAAG : GTTCTTCGAGATGGAAAATGGAATGAAGAAGATGCTGCTGTTCTTGTTCCTGGGGACATTATCAGTATTAAACTGGGAGATATTATTCCTGCAGATGCTCGTCTTCTTGAAGGTGATCCCCTGAAAATTGACCAG : TCTGCTTTGACTGGTGAATCTCTTCCTGTAACTAAAGGTCCTGGAGATGGTGTCTACTCTGGTTCTACCTGTAAGCAGGGAGAGATAGAAGCTGTCGTCATCGCCACTGGGGTTCATACCTTTTTTGGGAAGGCTGCACACCTTGTTGACAGTACAAATCAAGTGGGACACTTCCAAAAG : GTTTTGACTGCTATTGGAAACTTCTGCATCTGTTCTATTGCAGTGGGGATGATAATAGAGATCATTGTGATGTACCCTATCCAACACCGCAAATATCGCCCTGGGATTGACAATCTTCTTGTCCTTCTCATTGGTGGAATTCCAATTGCCATGCCAACGGTTCTTTCAGTCACGATGGCAATTGGATCTCATCGGCTCGCTCAACAG : GGTGCTATTACGAAAAGAATGACAGCTATTGAGGAGATGGCTGGTATGGACGTGCTTTGTAGTGACAAGACAGGGACCCTTACACTAAACAAGCTTACTGTTGACAAAAACCTTGTTGAG : GTTTTTGCCAAAGGTGTTGACGCAGATACTGTCGTTCTGATGGCAGCTCGAGCGTCTCGTACAGAGAACCAGGATGCCATTGACACTGCTATTGTTGGGATGTTGTCTGACCCGAAGGAG : GCTCGTGCTGGCATTCGTGAAATACACTTTCTTCCTTTCAATCCAACTGACAAGCGTACAGCGCTTACTTATCTTGATGGTGAAGGAAAAATGCACAGGGTCAGCAAAGGGGCACCAGAGCAG : ATCCTAAATCTTGCACACAACAAGTCAGACATAGAACGTAGAGTTCATGCGGTGATTGATAAGTTTGCTGAGAGGGGTTTGCGCTCACTTGGTGTGGCCTACCAG : GAAGTTCCAGAGGGAAGGAAGGAGAGTTCCGGAGGACCATGGCAATTCATTGGTCTCCTGCCTTTGTTTGATCCTCCAAGACACGACAGTGCTGAGACTATAAGGAGGGCTTTGAATCTTGGAGTGAATGTTAAAATGATCACAG : GGGATCAACTGGCTATAGGAAAAGAAACAGGGCGTCGTCTGGGAATGGGAACCAACATGTATCCTTCATCTGCTCTGTTGGGGCAGACTAAGGATGAATCAATTGCTTCTTTACCAATTGATGAACTGATAGAAAAGGCTGATGGTTTTGCTGGAGTATTCCCTG : AGCACAAATATGAGATTGTAAAACGCTTGCAAGCTAGGAAGCATATCTGTGGAATGACTGGAGATGGAGTCAATGACGCTCCTGCTTTAAAGAAGGCTGATATTGGGATAGCTGTTGATGATGCCACTGATGCTGCTCGTAGTGCTTCTGACATTGTTCTTACTGAACCTGGTCTCAGTGTCATCATTAGTGCTGTTCTGACTAGTCGAGCAATCTTTCAAAGGATGAAAAACTATACG : ATATATGCTGTTTCCATCACAATCCGTATTGTG : CTTGGTTTTATGCTTCTGGCCCTTATCTGGAAGTTTGACTTTCCACCTTTCATGGTGCTTATCATTGCAATCCTCAATGACG : GTACCATTATGACAATATCAAAGGATAGGGTCAAACCATCTCCTCTGCCTGATAGTTGGAAGCTGGCTGAGATTTTCACTACTGGGGTTGTTCTTGGTGGCTACTTGGCAATGATGACAGTCATTTTCTTTTGGGCAGCATATGAGACAGATTTCTTCCCG : CGTGTATTTGGGGTATCAACACTTCAGAGGACAGCAACTGATGACTTCAGGAAACTTGCATCAGCAATTTACCTTCAAGTGAGCACTATCAGTCAGGCCCTGATATTTGTCACAAGATCTCGAAGTTGGTCGTTTGTTGAGCGTCCTGGTTTGTTGCTTGTGGTTGCTTTTCTGATTGCTCAACTG : GTTGCCACCTTGATTGCTGTTTATGCAAGTTGGAGCTTTGCTGCAATCGAAGGAATTGGCTGGGGTTGGGCAGGAGTGATCTGGCTCTACAATTTAGTATTCTACTTCCCGCTTGATATCATCAAGTTCTTAATCAGATATGCTCTCAGTGGAAGGGCCTGGGATCTTGTTCTTGAGCAAAGG : ATTGCTTTCACCAGGAAGAAGGATTTCGGAAAAGAACAACGTGAGCTTCAATGGGCCCACGCACAGAGGACCCTTCATGGGCTGCAAGTTCCTGACACCAAATTGTTTAGTGAAGCTACCAATTTCAATGAGCTTAATCAGTTAGCTGAGGAAGCAAAGAGGAGAGCTGAAATCGCTAG : GCAACGTGAGCTGCACACACTTAAAGGTCACGTGGAATCAGTGGTGAAGTTGAAGGGTCTTGACATAGAGACAATTCAGCAGTCATACACTGTTTGATGTGGGAGCAAGTATGACTAGTGCTACTTAACTGGTGAGTGGGTGATAGAATGAAGACATAATGAGTGTGTGAGTTACCTCTGGAGCGACAAGTTCATAGTAGTAACATCTTCAGCGTTTAAAAGTGCCTTATATATTTTATACATTTTTTTGCTTTGAATTCTTGGTTCATCTTTTCCTGCTTTCATGTCTTGACTACATTATATATATTACAATTGACCAAGAATGAATATTAAGCTATAACAGCATTCATTATCTATATTCTCAAGAGTTTTTATTTCATGGTTTAGCAGCATCTGGTTTTTGTACTGCTTCTCTCTATTCATTGATTAAAGAAGTTTGGCTTTTTT</gDNA_template>
            <first_frame> L  R  C  *  M  L  Y  *  R  R  L  W  I  W :   R  I  Y  P  L  K  K  F  L  K  I  *  D  V  P  K  R  V  L  L  V  Q  L  P  K  K  G  W  Q  F  L  G  T  T  N  *  R  R  R  R :   R  A  N  S  *  N  F  W  G  L  C  G  T  P  S  H  G  L  W  K  L  L  L  L  W  Q  L  L  L  Q  M  E  E :   E  S  L  R  I  G  K  I  L  W  V  L  L  P  C  *  *  L  T  Q  Q  L  V  L  L  R  R  I  M  L  A  M  Q  Q  L  L  S  W  L  V  S  L  L  K  P  R :   F  F  E  M  E  N  G  M  K  K  M  L  L  F  L  F  L  G  T  L  S  V  L  N  W  E  I  L  F  L  Q  M  L  V  F  L  K  V  I  P  *  K  L  T  S :   L  L  *  L  V  N  L  F  L  *  L  K  V  L  E  M  V  S  T  L  V  L  P  V  S  R  E  R  *  K  L  S  S  S  P  L  G  F  I  P  F  L  G  R  L  H  T  L  L  T  V  Q  I  K  W  D  T  S  K  R :   F  *  L  L  L  E  T  S  A  S  V  L  L  Q  W  G  *  *  *  R  S  L  *  C  T  L  S  N  T  A  N  I  A  L  G  L  T  I  F  L  S  F  S  L  V  E  F  Q  L  P  C  Q  R  F  F  Q  S  R  W  Q  L  D  L  I  G  S  L  N  R :   V  L  L  R  K  E  *  Q  L  L  R  R  W  L  V  W  T  C  F  V  V  T  R  Q  G  P  L  H  *  T  S  L  L  L  T  K  T  L  L  R :   F  L  P  K  V  L  T  Q  I  L  S  F  *  W  Q  L  E  R  L  V  Q  R  T  R  M  P  L  T  L  L  L  L  G  C  C  L  T  R  R  R :   L  V  L  A  F  V  K  Y  T  F  F  L  S  I  Q  L  T  S  V  Q  R  L  L  I  L  M  V  K  E  K  C  T  G  S  A  K  G  H  Q  S  R :   S  *  I  L  H  T  T  S  Q  T  *  N  V  E  F  M  R  *  L  I  S  L  L  R  G  V  C  A  H  L  V  W  P  T  R :   K  F  Q  R  E  G  R  R  V  P  E  D  H  G  N  S  L  V  S  C  L  C  L  I  L  Q  D  T  T  V  L  R  L  *  G  G  L  *  I  L  E  *  M  L  K  *  S  Q  :  G  I  N  W  L  *  E  K  K  Q  G  V  V  W  E  W  E  P  T  C  I  L  H  L  L  C  W  G  R  L  R  M  N  Q  L  L  L  Y  Q  L  M  N  *  *  K  R  L  M  V  L  L  E  Y  S  L  :  S  T  N  M  R  L  *  N  A  C  K  L  G  S  I  S  V  E  *  L  E  M  E  S  M  T  L  L  L  *  R  R  L  I  L  G  *  L  L  M  M  P  L  M  L  L  V  V  L  L  T  L  F  L  L  N  L  V  S  V  S  S  L  V  L  F  *  L  V  E  Q  S  F  K  G  *  K  T  I  R :   Y  M  L  F  P  S  Q  S  V  L  C :   L  V  L  C  F  W  P  L  S  G  S  L  T  F  H  L  S  W  C  L  S  L  Q  S  S  M  T  :  V  P  L  *  Q  Y  Q  R  I  G  S  N  H  L  L  C  L  I  V  G  S  W  L  R  F  S  L  L  G  L  F  L  V  A  T  W  Q  *  *  Q  S  F  S  F  G  Q  H  M  R  Q  I  S  S  R :   V  Y  L  G  Y  Q  H  F  R  G  Q  Q  L  M  T  S  G  N  L  H  Q  Q  F  T  F  K  *  A  L  S  V  R  P  *  Y  L  S  Q  D  L  E  V  G  R  L  L  S  V  L  V  C  C  L  W  L  L  F  *  L  L  N  W :   L  P  P  *  L  L  F  M  Q  V  G  A  L  L  Q  S  K  E  L  A  G  V  G  Q  E  *  S  G  S  T  I  *  Y  S  T  S  R  L  I  S  S  S  S  *  S  D  M  L  S  V  E  G  P  G  I  L  F  L  S  K  G :   L  L  S  P  G  R  R  I  S  E  K  N  N  V  S  F  N  G  P  T  H  R  G  P  F  M  G  C  K  F  L  T  P  N  C  L  V  K  L  P  I  S  M  S  L  I  S  *  L  R  K  Q  R  G  E  L  K  S  L   : G  N  V  S  C  T  H  L  K  V  T  W  N  Q  W  *  S  *  R  V  L  T  *  R  Q  F  S  S  H  T  L  F  D  V  G  A  S  M  T  S  A  T  *  L  V  S  G  *  *  N  E  D  I  M  S  V  *  V  T  S  G  A  T  S  S  *  *  *  H  L  Q  R  L  K  V  P  Y  I  F  Y  T  F  F  C  F  E  F  L  V  H  L  F  L  L  S  C  L  D  Y  I  I  Y  I  T  I  D  Q  E  *  I  L  S  Y  N  S  I  H  Y  L  Y  S  Q  E  F  L  F  H  G  L  A  A  S  G  F  C  T  A  S  L  Y  S  L  I  K  E  V  W  L  F  </first_frame>
            <second_frame>  *  G  V  R  C  C  I  K  G  D  C  G  F   : G  E  Y  T  H  *  R  S  F  *  K  F  E  M  Y  Q  R  G  S  Y  W  Y  S  C  P  R  K  V  G  N  F  W  V  Q  Q  T  R  G  E  E   : G  E  Q  I  L  E  I  S  G  V  Y  V  E  P  P  L  M  G  Y  G  S  C  C  Y  Y  G  N  C  S  C  K  W  R   : R  K  A  S  G  L  A  R  F  C  G  Y  Y  Y  L  A  S  D  *  L  N  N  *  F  Y  *  G  E  *  C  W  Q  C  S  S  C  S  H  G  S  S  R  S  *  S  Q   : G  S  S  R  W  K  M  E  *  R  R  C  C  C  S  C  S  W  G  H  Y  Q  Y  *  T  G  R  Y  Y  S  C  R  C  S  S  S  *  R  *  S  P  E  N  *  P   : V  C  F  D  W  *  I  S  S  C  N  *  R  S  W  R  W  C  L  L  W  F  Y  L  *  A  G  R  D  R  S  C  R  H  R  H  W  G  S  Y  L  F  W  E  G  C  T  P  C  *  Q  Y  K  S  S  G  T  L  P  K   : G  F  D  C  Y  W  K  L  L  H  L  F  Y  C  S  G  D  D  N  R  D  H  C  D  V  P  Y  P  T  P  Q  I  S  P  W  D  *  Q  S  S  C  P  S  H  W  W  N  S  N  C  H  A  N  G  S  F  S  H  D  G  N  W  I  S  S  A  R  S  T   : G  C  Y  Y  E  K  N  D  S  Y  *  G  D  G  W  Y  G  R  A  L  *  *  Q  D  R  D  P  Y  T  K  Q  A  Y  C  *  Q  K  P  C  *   : G  F  C  Q  R  C  *  R  R  Y  C  R  S  D  G  S  S  S  V  S  Y  R  E  P  G  C  H  *  H  C  Y  C  W  D  V  V  *  P  E  G   : G  S  C  W  H  S  *  N  T  L  S  S  F  Q  S  N  *  Q  A  Y  S  A  Y  L  S  *  W  *  R  K  N  A  Q  G  Q  Q  R  G  T  R  A   : D  P  K  S  C  T  Q  Q  V  R  H  R  T  *  S  S  C  G  D  *  *  V  C  *  E  G  F  A  L  T  W  C  G  L  P   : G  S  S  R  G  K  E  G  E  F  R  R  T  M  A  I  H  W  S  P  A  F  V  *  S  S  K  T  R  Q  C  *  D  Y  K  E  G  F  E  S  W  S  E  C  *  N  D  H  R :   G  S  T  G  Y  R  K  R  N  R  A  S  S  G  N  G  N  Q  H  V  S  F  I  C  S  V  G  A  D  *  G  *  I  N  C  F  F  T  N  *  *  T  D  R  K  G  *  W  F  C  W  S  I  P  * :   A  Q  I  *  D  C  K  T  L  A  S  *  E  A  Y  L  W  N  D  W  R  W  S  Q  *  R  S  C  F  K  E  G  *  Y  W  D  S  C  *  *  C  H  *  C  C  S  *  C  F  *  H  C  S  Y  *  T  W  S  Q  C  H  H  *  C  C  S  D  *  S  S  N  L  S  K  D  E  K  L  Y   : D  I  C  C  F  H  H  N  P  Y  C   : A  W  F  Y  A  S  G  P  Y  L  E  V  *  L  S  T  F  H  G  A  Y  H  C  N  P  Q  *  R :   Y  H  Y  D  N  I  K  G  *  G  Q  T  I  S  S  A  *  *  L  E  A  G  *  D  F  H  Y  W  G  C  S  W  W  L  L  G  N  D  D  S  H  F  L  L  G  S  I  *  D  R  F  L  P   : A  C  I  W  G  I  N  T  S  E  D  S  N  *  *  L  Q  E  T  C  I  S  N  L  P  S  S  E  H  Y  Q  S  G  P  D  I  C  H  K  I  S  K  L  V  V  C  *  A  S  W  F  V  A  C  G  C  F  S  D  C  S  T   : G  C  H  L  D  C  C  L  C  K  L  E  L  C  C  N  R  R  N  W  L  G  L  G  R  S  D  L  A  L  Q  F  S  I  L  L  P  A  *  Y  H  Q  V  L  N  Q  I  C  S  Q  W  K  G  L  G  S  C  S  *  A  K   : D  C  F  H  Q  E  E  G  F  R  K  R  T  T  *  A  S  M  G  P  R  T  E  D  P  S  W  A  A  S  S  *  H  Q  I  V  *  *  S  Y  Q  F  Q  *  A  *  S  V  S  *  G  S  K  E  E  S  *  N  R  *  :  A  T  *  A  A  H  T  *  R  S  R  G  I  S  G  E  V  E  G  S  *  H  R  D  N  S  A  V  I  H  C  L  M  W  E  Q  V  *  L  V  L  L  N  W  *  V  G  D  R  M  K  T  *  *  V  C  E  L  P  L  E  R  Q  V  H  S  S  N  I  F  S  V  *  K  C  L  I  Y  F  I  H  F  F  A  L  N  S  W  F  I  F  S  C  F  H  V  L  T  T  L  Y  I  L  Q  L  T  K  N  E  Y  *  A  I  T  A  F  I  I  Y  I  L  K  S  F  Y  F  M  V  *  Q  H  L  V  F  V  L  L  L  S  I  H  *  L  K  K  F  G  F  F </second_frame>
            <third_frame>   E  V  L  D  A  V  L  K  E  T  V  D  L  :  E  N  I  P  I  E  E  V  F  E  N  L  R  C  T  K  E  G  L  T  G  T  A  A  Q  E  R  L  A  I  F  G  Y  N  K  L  E  E  K  K  :  E  S  K  F  L  K  F  L  G  F  M  W  N  P  L  S  W  V  M  E  A  A  A  I  M  A  I  A  L  A  N  G  G  :  G  K  P  P  D  W  Q  D  F  V  G  I  I  T  L  L  V  I  N  S  T  I  S  F  I  E  E  N  N  A  G  N  A  A  A  A  L  M  A  R  L  A  P  K  A  K  :  V  L  R  D  G  K  W  N  E  E  D  A  A  V  L  V  P  G  D  I  I  S  I  K  L  G  D  I  I  P  A  D  A  R  L  L  E  G  D  P  L  K  I  D  Q  :  S  A  L  T  G  E  S  L  P  V  T  K  G  P  G  D  G  V  Y  S  G  S  T  C  K  Q  G  E  I  E  A  V  V  I  A  T  G  V  H  T  F  F  G  K  A  A  H  L  V  D  S  T  N  Q  V  G  H  F  Q  K  :  V  L  T  A  I  G  N  F  C  I  C  S  I  A  V  G  M  I  I  E  I  I  V  M  Y  P  I  Q  H  R  K  Y  R  P  G  I  D  N  L  L  V  L  L  I  G  G  I  P  I  A  M  P  T  V  L  S  V  T  M  A  I  G  S  H  R  L  A  Q  Q  :  G  A  I  T  K  R  M  T  A  I  E  E  M  A  G  M  D  V  L  C  S  D  K  T  G  T  L  T  L  N  K  L  T  V  D  K  N  L  V  E  :  V  F  A  K  G  V  D  A  D  T  V  V  L  M  A  A  R  A  S  R  T  E  N  Q  D  A  I  D  T  A  I  V  G  M  L  S  D  P  K  E  :  A  R  A  G  I  R  E  I  H  F  L  P  F  N  P  T  D  K  R  T  A  L  T  Y  L  D  G  E  G  K  M  H  R  V  S  K  G  A  P  E  Q  :  I  L  N  L  A  H  N  K  S  D  I  E  R  R  V  H  A  V  I  D  K  F  A  E  R  G  L  R  S  L  G  V  A  Y  Q  :  E  V  P  E  G  R  K  E  S  S  G  G  P  W  Q  F  I  G  L  L  P  L  F  D  P  P  R  H  D  S  A  E  T  I  R  R  A  L  N  L  G  V  N  V  K  M  I  T   : G  D  Q  L  A  I  G  K  E  T  G  R  R  L  G  M  G  T  N  M  Y  P  S  S  A  L  L  G  Q  T  K  D  E  S  I  A  S  L  P  I  D  E  L  I  E  K  A  D  G  F  A  G  V  F  P   : E  H  K  Y  E  I  V  K  R  L  Q  A  R  K  H  I  C  G  M  T  G  D  G  V  N  D  A  P  A  L  K  K  A  D  I  G  I  A  V  D  D  A  T  D  A  A  R  S  A  S  D  I  V  L  T  E  P  G  L  S  V  I  I  S  A  V  L  T  S  R  A  I  F  Q  R  M  K  N  Y  T  :  I  Y  A  V  S  I  T  I  R  I  V  :  L  G  F  M  L  L  A  L  I  W  K  F  D  F  P  P  F  M  V  L  I  I  A  I  L  N  D   : G  T  I  M  T  I  S  K  D  R  V  K  P  S  P  L  P  D  S  W  K  L  A  E  I  F  T  T  G  V  V  L  G  G  Y  L  A  M  M  T  V  I  F  F  W  A  A  Y  E  T  D  F  F  P  :  R  V  F  G  V  S  T  L  Q  R  T  A  T  D  D  F  R  K  L  A  S  A  I  Y  L  Q  V  S  T  I  S  Q  A  L  I  F  V  T  R  S  R  S  W  S  F  V  E  R  P  G  L  L  L  V  V  A  F  L  I  A  Q  L  :  V  A  T  L  I  A  V  Y  A  S  W  S  F  A  A  I  E  G  I  G  W  G  W  A  G  V  I  W  L  Y  N  L  V  F  Y  F  P  L  D  I  I  K  F  L  I  R  Y  A  L  S  G  R  A  W  D  L  V  L  E  Q  R  :  I  A  F  T  R  K  K  D  F  G  K  E  Q  R  E  L  Q  W  A  H  A  Q  R  T  L  H  G  L  Q  V  P  D  T  K  L  F  S  E  A  T  N  F  N  E  L  N  Q  L  A  E  E  A  K  R  R  A  E  I  A  R :   Q  R  E  L  H  T  L  K  G  H  V  E  S  V  V  K  L  K  G  L  D  I  E  T  I  Q  Q  S  Y  T  V  *  C  G  S  K  Y  D  *  C  Y  L  T  G  E  W  V  I  E  *  R  H  N  E  C  V  S  Y  L  W  S  D  K  F  I  V  V  T  S  S  A  F  K  S  A  L  Y  I  L  Y  I  F  L  L  *  I  L  G  S  S  F  P  A  F  M  S  *  L  H  Y  I  Y  Y  N  *  P  R  M  N  I  K  L  *  Q  H  S  L  S  I  F  S  R  V  F  I  S  W  F  S  S  I  W  F  L  Y  C  F  S  L  F  I  D  *  R  S  L  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18493" stop="18455"/>
                    <exon start="18359" stop="18240"/>
                    <exon start="17870" stop="17772"/>
                    <exon start="17685" stop="17548"/>
                    <exon start="17401" stop="17267"/>
                    <exon start="17176" stop="16997"/>
                    <exon start="16900" stop="16694"/>
                    <exon start="16574" stop="16455"/>
                    <exon start="16371" stop="16252"/>
                    <exon start="16171" stop="16049"/>
                    <exon start="15958" stop="15854"/>
                    <exon start="15647" stop="15503"/>
                    <exon start="14884" stop="14720"/>
                    <exon start="14607" stop="14369"/>
                    <exon start="14182" stop="14150"/>
                    <exon start="14059" stop="13978"/>
                    <exon start="13396" stop="13236"/>
                    <exon start="12763" stop="12578"/>
                    <exon start="12497" stop="12315"/>
                    <exon start="12230" stop="12052"/>
                    <exon start="11792" stop="11696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2853</number_coding_nucleotides>
                  <number_encoded_amino_acids>951</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVLDAVLKETVDLENIPIEEVFENLRCTKEGLTGTAAQERLAIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWNEEDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDADTVVLMAARASRTENQDAIDTAIVGMLSDPKEARAGIREIHFLPFNPTDKRTALTYLDGEGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLGVAYQEVPEGRKESSGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQTKDESIASLPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETDFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFLIAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20813" PGL_stop="23357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20813" e_stop="20953"/>
            <exon e_start="21689" e_stop="21880"/>
            <exon e_start="22054" e_stop="22174"/>
            <exon e_start="22274" e_stop="22365"/>
            <exon e_start="22457" e_stop="22553"/>
            <exon e_start="22787" e_stop="23357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20813" e_stop="20953" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="20954" i_stop="21688" i_length="735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21689" e_stop="21880" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21881" i_stop="22053" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22054" e_stop="22174" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.824" acc_prob="0.950">
            <gDNA_intron_boundary i_start="22175" i_stop="22273" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22274" e_stop="22365" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="22366" i_stop="22456" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22457" e_stop="22553" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.788" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22554" i_stop="22786" i_length="233"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22787" e_stop="23357" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20953"/>
              <exon start="21689" stop="21880"/>
              <exon start="22054" stop="22174"/>
              <exon start="22274" stop="22365"/>
              <exon start="22457" stop="22553"/>
              <exon start="22787" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTACAATTTCCACATACTTTCTTCTTCATCAAGTCTCTTTCCTCCATAGACTTATCCCCAAATATATAAACTCACCCATCTTAACTATCGAAATACCCATTTCGATTCTTCACTCCTTCGCTAGCTTTGTTGCTTCG : AGTATGGGCAATCTATTGGGCTGTGTACAAGTTGATCAATCCACCGTCGCAATTACAGAGCAGTTTGGCAAGTATCAAGATGTGCTTCAGCCAGGTTGCCACTGCCTGCCTTGGTGCTTCGGATTCCAGTTAGCTGGCCATCTCTCCCTCAGGGTGCAACAATTGGATGTTCGCTGCGAGACAAAGACAAAG : GATAATGTGTTTGTCAATGTTGTGGCATCAATTCAGTACCGTGCCCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTAAGCAACACTAAGGGTCAAATTCAGGCCTATGTTTTTGATG : TCATTAGAGCAAGTGTTCCAAAACTCAATCTTGATGATGTTTTCGAGCAGAAAAATGAAATTGCCAAGGCTGTCGAGGATGAACTTGAGAAG : GCTATGTCGGCTTATGGATATGAAATTGTTCAAACACTTATAGTTGATATAGAACCAGATGAGAATGTGAAGAGAGCTATGAATGAAATCAATGCTG : CTGCTCGGCTGAGGGTGGCTGCTAATGAGAAAGCAGAGGCGGAGAAGATTTTGCAAATTAAGAGGGCTGAAGGAGAGGCAGAATCAAAGTATCTTTCAGGGTTAGGTATTGCACGACAGCGTCAAGCGATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCAGTGAATGTGCCTGGAACCTCAGCAAAAGATGTAATGGACATGGTCCTTTTAACCCAGTACTTTGACACCATGAAAGAAATTGGCGCTTCCAGTAAATCATCTGCTGTCTTCCTTCCTCATGGGCCTGGTGCTGTAAGAGATGTGGCAAGCCAGATCCGCGATGGACTCCTTCAAGCTTCTGTGAACCATTAAATGTTTCTACTATATCAGAAATGTTAATTGTGTTTCACTTGAAGCAGCCTTTTTCATTTTGTGTTTACTTTCTGTTAGTGTGGATATGTTTGGCGAGTTTGACTTTGTATTTGTGAATGCCTCTAGTATCTTATATTGTAAAGAATTTAATATCCCAGACCTTTGAAGAATTATATACTATTAATAGATGGATGTGATATTTCTCCTCGTTA</gDNA_template>
            <first_frame> S  I  T  I  S  T  Y  F  L  L  H  Q  V  S  F  L  H  R  L  I  P  K  Y  I  N  S  P  I  L  T  I  E  I  P  I  S  I  L  H  S  F  A  S  F  V  A  S  :  S  M  G  N  L  L  G  C  V  Q  V  D  Q  S  T  V  A  I  T  E  Q  F  G  K  Y  Q  D  V  L  Q  P  G  C  H  C  L  P  W  C  F  G  F  Q  L  A  G  H  L  S  L  R  V  Q  Q  L  D  V  R  C  E  T  K  T  K  :  D  N  V  F  V  N  V  V  A  S  I  Q  Y  R  A  L  A  D  K  A  N  D  A  F  Y  K  L  S  N  T  K  G  Q  I  Q  A  Y  V  F  D   : V  I  R  A  S  V  P  K  L  N  L  D  D  V  F  E  Q  K  N  E  I  A  K  A  V  E  D  E  L  E  K  :  A  M  S  A  Y  G  Y  E  I  V  Q  T  L  I  V  D  I  E  P  D  E  N  V  K  R  A  M  N  E  I  N  A   : A  A  R  L  R  V  A  A  N  E  K  A  E  A  E  K  I  L  Q  I  K  R  A  E  G  E  A  E  S  K  Y  L  S  G  L  G  I  A  R  Q  R  Q  A  I  V  D  G  L  R  D  S  V  L  G  F  S  V  N  V  P  G  T  S  A  K  D  V  M  D  M  V  L  L  T  Q  Y  F  D  T  M  K  E  I  G  A  S  S  K  S  S  A  V  F  L  P  H  G  P  G  A  V  R  D  V  A  S  Q  I  R  D  G  L  L  Q  A  S  V  N  H  *  M  F  L  L  Y  Q  K  C  *  L  C  F  T  *  S  S  L  F  H  F  V  F  T  F  C  *  C  G  Y  V  W  R  V  *  L  C  I  C  E  C  L  *  Y  L  I  L  *  R  I  *  Y  P  R  P  L  K  N  Y  I  L  L  I  D  G  C  D  I  S  P  R   </first_frame>
            <second_frame>  P  L  Q  F  P  H  T  F  F  F  I  K  S  L  S  S  I  D  L  S  P  N  I  *  T  H  P  S  *  L  S  K  Y  P  F  R  F  F  T  P  S  L  A  L  L  L  R :   V  W  A  I  Y  W  A  V  Y  K  L  I  N  P  P  S  Q  L  Q  S  S  L  A  S  I  K  M  C  F  S  Q  V  A  T  A  C  L  G  A  S  D  S  S  *  L  A  I  S  P  S  G  C  N  N  W  M  F  A  A  R  Q  R  Q  R :   I  M  C  L  S  M  L  W  H  Q  F  S  T  V  P  W  Q  T  K  Q  M  M  L  S  T  N  *  A  T  L  R  V  K  F  R  P  M  F  L  M  :  S  L  E  Q  V  F  Q  N  S  I  L  M  M  F  S  S  R  K  M  K  L  P  R  L  S  R  M  N  L  R  R :   L  C  R  L  M  D  M  K  L  F  K  H  L  *  L  I  *  N  Q  M  R  M  *  R  E  L  *  M  K  S  M  L  :  L  L  G  *  G  W  L  L  M  R  K  Q  R  R  R  R  F  C  K  L  R  G  L  K  E  R  Q  N  Q  S  I  F  Q  G  *  V  L  H  D  S  V  K  R  L  W  M  V  *  E  T  A  C  S  D  S  Q  *  M  C  L  E  P  Q  Q  K  M  *  W  T  W  S  F  *  P  S  T  L  T  P  *  K  K  L  A  L  P  V  N  H  L  L  S  S  F  L  M  G  L  V  L  *  E  M  W  Q  A  R  S  A  M  D  S  F  K  L  L  *  T  I  K  C  F  Y  Y  I  R  N  V  N  C  V  S  L  E  A  A  F  F  I  L  C  L  L  S  V  S  V  D  M  F  G  E  F  D  F  V  F  V  N  A  S  S  I  L  Y  C  K  E  F  N  I  P  D  L  *  R  I  I  Y  Y  *  *  M  D  V  I  F  L  L  V  </second_frame>
            <third_frame>   H  Y  N  F  H  I  L  S  S  S  S  S  L  F  P  P  *  T  Y  P  Q  I  Y  K  L  T  H  L  N  Y  R  N  T  H  F  D  S  S  L  L  R  *  L  C  C  F   : E  Y  G  Q  S  I  G  L  C  T  S  *  S  I  H  R  R  N  Y  R  A  V  W  Q  V  S  R  C  A  S  A  R  L  P  L  P  A  L  V  L  R  I  P  V  S  W  P  S  L  P  Q  G  A  T  I  G  C  S  L  R  D  K  D  K   : G  *  C  V  C  Q  C  C  G  I  N  S  V  P  C  P  G  R  Q  S  K  *  C  F  L  Q  T  K  Q  H  *  G  S  N  S  G  L  C  F  *  C :   H  *  S  K  C  S  K  T  Q  S  *  *  C  F  R  A  E  K  *  N  C  Q  G  C  R  G  *  T  *  E   : G  Y  V  G  L  W  I  *  N  C  S  N  T  Y  S  *  Y  R  T  R  *  E  C  E  E  S  Y  E  *  N  Q  C  C :   C  S  A  E  G  G  C  *  *  E  S  R  G  G  E  D  F  A  N  *  E  G  *  R  R  G  R  I  K  V  S  F  R  V  R  Y  C  T  T  A  S  S  D  C  G  W  F  E  R  Q  R  A  R  I  L  S  E  C  A  W  N  L  S  K  R  C  N  G  H  G  P  F  N  P  V  L  *  H  H  E  R  N  W  R  F  Q  *  I  I  C  C  L  P  S  S  W  A  W  C  C  K  R  C  G  K  P  D  P  R  W  T  P  S  S  F  C  E  P  L  N  V  S  T  I  S  E  M  L  I  V  F  H  L  K  Q  P  F  S  F  C  V  Y  F  L  L  V  W  I  C  L  A  S  L  T  L  Y  L  *  M  P  L  V  S  Y  I  V  K  N  L  I  S  Q  T  F  E  E  L  Y  T  I  N  R  W  M  *  Y  F  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0125P18.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20813" stop="20953"/>
                    <exon start="21689" stop="21880"/>
                    <exon start="22054" stop="22174"/>
                    <exon start="22274" stop="22365"/>
                    <exon start="22457" stop="22553"/>
                    <exon start="22787" stop="23145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITISTYFLLHQVSFLHRLIPKYINSPILTIEIPISILHSFASFVASSMGNLLGCVQVDQSTVAITEQFGKYQDVLQPGCHCLPWCFGFQLAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKGQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQASVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 12704 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2117 bytes was the average size of a spliced alignment
$ 9856 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2464 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:20:50
-->
